|
Volume 271, Number 22,
Issue of May 31, 1996
pp. 12744-12748
©1996 by The American Society for Biochemistry and Molecular Biology, Inc.
Different Architecture of the Combining Site of the Two Chicken
Galectins Revealed by Chemical Mapping Studies with Synthetic Ligand
Derivatives*
(Received for publication, January 16, 1996, and in revised form, February 29, 1996)
Dolores
Solís
§,
Antonio
Romero
,
Herbert
Kaltner
¶,
Hans-Joachim
Gabius
¶ and
Teresa
Díaz-Mauriño
From the Instituto de Química Física
Rocasolano, Consejo Superior de Investigaciones
Científicas, Serrano 119, E-28006 Madrid, Spain and the
¶ Institut für Physiologische Chemie, Tierärztliche
Fakultät, Ludwig-Maximilians-Universität,
Veterinärstrasse 13, D-80539 München, Federal Republic of
Germany
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
FOOTNOTES
Acknowledgments
REFERENCES
ABSTRACT
The detailed comparison of the
carbohydrate-binding properties of related galectins from one organism
can be facilitated by the application of an array of deliberately
tailored methyl -lactoside derivatives. Focusing on chicken due to
its expression of two galectins as a model for this approach, the
combining-site architecture of the lectin from adult liver (CL-16) is
apparently homologous to that previously observed for bovine galectin-1
(Solís, D., Jiménez-Barbero, J., Martín-Lomas,
M., and Díaz-Mauriño, T. (1994) Eur. J. Biochem.
223, 107-114). Besides preservation of the key interactions and
minor differences, the lectin from adult intestine (CL-14) is able to
accommodate an axial HO-3 at the glucose moiety. Homology-based
modeling enabled us to tentatively attribute the observed differences
to a slightly different orientation of pivotal side chains in the
binding pocket due to distinct substitutions of amino acid residues in
the variable region within the carbohydrate-recognition domain. Thus,
the results suggest overlapping but distinct ranges of potential
ligands for the two chicken lectins and provide new information on
their relationship to mammalian galectins. The described approach is
suggested to be of relevance to design pharmaceuticals with enhanced
selectivity to a certain member within a family of related lectins.
INTRODUCTION
Galectins are a growing family of metal ion-independent
-galactoside-binding lectins that are widely distributed in animal
tissues, their divergence extending even in one organism to expression
of several members of this family (1, 2). Their presumed involvement in
cell-cell and cell-matrix interactions has already led to initial
attempts to design clinically effective glycoinhibitors for galectins
(3, 4). However, their application can be hampered by the fact that the
target selectivity is not high enough to reduce undesired
cross-reactivity to related agglutinins of this family. Since the
molecular features of protein-carbohydrate interaction for the
individual lectins of this family are presently not precisely defined,
we herein exemplify a systematic approach to address this issue,
applicable also to other groups of pharmaceutically interesting lectins
such as selectins.
In the chicken only two different galectins have been identified (5).
Although they have been called CL-14 and CL-16 on the basis of their
electrophoretic mobilities under denaturing conditions, both have
subunits of about 15 kDa, as calculated from their amino acid sequences
(6, 7) and confirmed by electrospray mass spectrometry (8). The two
lectins are 48% identical in sequence, which is a similar degree of
identity to what each lectin shows with the well characterized
mammalian galectin-1 and -2 (about 50 and 38%, respectively).
Interestingly, the quaternary structure of the two lectins is different
since at physiological ionic strength CL-14 is a monomer whereas CL-16
is mostly present as a homodimer (5, 9). Thus, in spite of being
isolectins supposedly derived from gene duplication at the time of
divergence of birds and mammals (7), CL-14 and CL-16 are not so similar
as emphasized, for example, by differential binding to homologous
lymphocyte populations and independent tissue-specific regulation
throughout development (8, 10). In adult chicken, CL-14 is abundantly
present in intestine, whereas CL-16 is found in liver and retina nearly
exclusively (5, 9, 10). As similarly acknowledged in the case of the
several human galectins, for example, the precise function(s) of this
regulation remains to be elucidated. Obviously, histochemically
monitoring ligand expression, as initiated recently (11), can provide
potentially valuable information. At any rate, the restriction of
expression to two galectins in chicken presents a useful model to
illustrate the potency of our approach.
There are notable differences in the oligosaccharide-binding
specificity of different galectins despite a common recognition of the
Gal (1,4)GlcNAc and Gal (1,3)GlcNAc backbone structures (12, 13, 14, 15).
They must be the consequence of a different architecture of the
combining sites and/or different atomic features of the recognition
process. X-ray crystallography has revealed a similar but not identical
carbohydrate-binding geometry for galectin-1 (16) and galectin-2 (17)
that involves key interactions of the hydroxyl groups at positions 4
and 6 of galactose and at position 3 of glucose in
N-acetyllactosamine. It is essential to emphasize that a
similar mode of binding has been observed in solution by chemical
mapping studies in which the interaction of different monodeoxy,
O-methyl and fluorodeoxy derivatives of methyl -lactoside
to galectin-1 was investigated (18). Therefore, it is reasonable to
suggest that such a deliberate chemical mapping study will prove very
informative for the analysis of protein-carbohydrate interactions in
solution (19, 20). In the absence of x-ray structures they are a
valuable source of information to identify the key interactions
stabilizing the complexes and to infer the ligand orientation with
respect to donors/acceptors of hydrogen bonding of amino acid side
chains in the combining site. In the present work, the molecular
recognition of the synthetic methyl -lactoside derivatives by CL-14
and CL-16 has been studied to probe the hydrogen-bonding and steric
requirements of the combining sites for recognition. The results reveal
some significant differences in the mode of binding for the two lectins
from one organism. They suggest overlapping but distinct ranges of
potential ligands, underscoring the relevance of this approach for
tailoring selective ligands within a family of related lectins.
EXPERIMENTAL PROCEDURES
Materials
Sources for saccharides were as indicated in
detail previously (18). The chicken -galactoside-specific lectins,
CL-14 from adult intestine and CL-16 from adult liver, were isolated by
successive steps of affinity and ion exchange chromatography (8).
Radioiodination of the lectins using IODO-GEN (Pierce Eurochemie) was
carried out under activity-preserving conditions in the presence of 0.1
M lactose as described for bovine galectin-1 (18). CL-14
was also radioiodinated in the presence of lactose using Bolton-Hunter
reagent (Amersham Int.) according to the manufacturer's
recommendations. Biotinylation of the lectins was carried out using an
N-hydroxysuccinimide-biotin ester (Amersham Int.) also as
instructed by the manufacturer. Streptavidin (Sigma) was iodinated
using IODO-GEN.
Quantitative Binding Studies
Binding of the
125I-labeled chicken lectins was assayed using asialofibrin
films on the surface of plastic microwells essentially as described
(18) except that the buffer used was 5 mM sodium phosphate
buffer, pH 7.2, containing 0.2 M NaCl, 2 mM
2-mercaptoethanol, and 1% bovine serum albumin. For binding assays
with biotinylated lectins, precoated wells were incubated with 50 µl
of 3 µg of lectin/ml solution for 2 h at 25 °C, and the extent of
bound lectin was monitored by measuring the amount of streptavidin
associated to the wells after incubation for 1 h at 25 °C with 50
µl (15000 cpm) of 125I-streptavidin solution in the same
buffer and thorough washing steps to remove unbound radioactive
material.
The affinity of the lectins for the different methyl -lactoside
analogues was estimated by determining the amount of
125I-lectin bound to 100 µg of asialofibrin films after
incubation with 50 µl of the 125I-lectin solution (15000
cpm, approximately 50 nM) containing different
concentrations of the sugar (from 0.1 to 8 mM; up to 80
mM for galactose) (18).
RESULTS
Labeling and Storage of the Lectins
The conditions required
for the labeling and storage of the lectins were first investigated by
testing the binding of the labeled lectins to asialofibrin films on the
surface of plastic microwells (18). Tyrosine iodination of CL-14 even
in the presence of lactose resulted in an inactive preparation showing
negligible binding to asialofibrin. Therefore, a different labeling
procedure, targeted to primary amino groups, was assayed.
Radioiodination using Bolton-Hunter reagent yielded an active product.
It bound to asialofibrin in a concentration-dependent
manner, and a similar behavior was observed also after biotinylation of
amino groups using N-hydroxysuccinimide-biotin ester (Fig.
1). About 8-10% of the radioiodinated CL-14
preparation bound to 100 µg asialofibrin films, and 80% of the
binding was inhibited by 0.1 M lactose. Because the
percentage of specifically bound radioactivity was rather low, the
possibility that the observed binding could be due to a contaminant,
which is not or only weakly reactive in silver staining during the
quality control after purification, was ruled out by elution of the
radioactivity bound to the films with SDS-polyacrylamide gel
electrophoresis sample buffer and subsequent analysis by
electrophoresis and autoradiography. The results unequivocally
demonstrated that the radioactive material bound to asialofibrin was
almost exclusively intact 125I-CL-14.
Fig. 1.
Binding of CL-14 and CL-16 to asialofibrin
films on the surface of plastic microwells. The lectins were
radioiodinated using Bolton-Hunter reagent for CL-14 ( ) and IODO-GEN
for CL-16 ( ), as described under ``Experimental Procedures.''
X axis refers to the total amount of asialofibrin clotted in
the well. Inset, binding of biotinylated CL-14 ( ) and
CL-16 ( ) to asialofibrin. Quantity of bound lectins was monitored by
measuring the binding of 125I-streptavidin to the
wells.
On the other hand, tyrosine-iodinated CL-16 bound rather readily to the
films in proportion to the amount of asialofibrin in the well, and a
similar behavior was observed for the biotinylated lectin (Fig. 1).
About 20% of 125I-CL-16 bound at 100 µg of
asialofibrin/well and, nonspecific binding in the presence of 0.1
M lactose was less than 2%.
Labeled CL-16 could be stored at 20 °C in aliquots for months
without significant loss of carbohydrate-binding activity. However,
freezing of the NH2-labeled CL-14 resulted in a dramatic
decrease of activity, the specific binding to 100 µg of asialofibrin
films then being only 1%. Thus, this lectin was pooled after labeling
(50 µg of lectin/ml of solution in 5 mM sodium phosphate
buffer, pH 7.2, containing 0.2 M NaCl and 2 mM
2-mercaptoethanol) and stored at 4 °C, where it remained stable for
at least 2 weeks.
Binding of Methyl -Lactoside Analogues to the
Lectins
Methyl -lactoside analogues were tested as inhibitors
of the binding of the 125I-lectins to 100 µg asialofibrin
films. For all the inhibitory glycoligands, the plot of the reciprocal
of the CL-14 fraction bound to the film versus the sugar
concentration gave a straight line with a mean correlation coefficient
of 0.988 ± 0.01, except for the 4 -deoxy and 6 -fluorodeoxy
derivatives which yielded correlation coefficients of 0.9. Concerning
CL-16, the plots also gave a straight line with a mean correlation
coefficient of 0.986 ± 0.01. A representative plot of the data
obtained with methyl -lactoside is shown in Fig. 2.
The apparent dissociation constants were calculated from the intercept
to the y axis and the slope of this line according to the
equation: Kd = (intercept 1)/slope (21). The
values obtained are summarized in Table I. For
comparative purposes, data previously obtained for bovine galectin-1
(18) are also included. Methyl -lactoside was also tested as
inhibitor of the binding of CL-16 to 3 µg asialofibrin films, where
the fraction of CL-16 bound to the well (about 10%) was similar to
that of CL-14 bound to 100 µg asialofibrin. A dissociation constant
of 0.81 ± 0.02 mM, equivalent to that shown in Table I,
was obtained. Thus, the calculated Kd values are not
dependent on the percentage of initially bound lectin, and, therefore,
the apparent dissociation constants for CL-14 and CL-16 in Table I are
perfectly comparable.
Fig. 2.
Inhibition of the binding of CL-14 and CL-16
to asialofibrin by methyl -lactoside. The extent of binding of
125I-CL-14 ( ) and 125I-CL-16 ( ) to 100
µg of asialofibrin films was measured in the presence of increasing
concentrations of the sugar.
In general, the binding of methyl -lactoside analogues to the
lectins resembled that observed for bovine galectin-1 (18), as could be
expected due to the remarkable sequence homology. The binding
affinities observed for the different derivatives at the
-D-galactopyranose unit indicated that the hydroxyl
groups at positions C-4 and C-6 are key groups in the interaction
with the chicken lectins; the hydroxyl group at C-3 participates in a
much smaller but still noticeable polar interaction whereas the
hydroxyl group at C-2 is apparently not involved in the recognition.
The key HO-4 and HO-6 act as donors of strong hydrogen bonds to the
protein, since there is a large loss in affinity upon deoxygenation at
these positions which is not restored by fluorination or
O-methylation. The slightly higher affinity observed for the
binding of the 6 -deoxy-6 -fluoro derivative to CL-14, as compared with
the deoxy compound, is in principle in accordance with an additional
involvement of the hydroxyl group at this position as an acceptor of a
hydrogen bond from the protein. However, the affinity of the lectins
for the derivatives at these two positions was too low to assess
definite differences in affinity between them and therefore to
comparatively evaluate quantitative aspects of the role of the hydroxyl
groups as hydrogen-bond acceptors.
The D-glucopyranose moiety of methyl -lactoside is also
involved in the recognition. Notably, the contribution to the binding
seems to be different for the two lectins. The key polar interaction
involves the hydroxyl group at position 3. However, the loss in
affinity upon deoxygenation or O-methylation at this
position is significantly smaller for CL-14 than for CL-16, suggesting
weaker interactions of HO-3 with the former lectin. In addition, CL-14,
but not CL-16, is able to accommodate an axial hydroxyl group at C-3
without a further significant reduction in affinity as compared with
the deoxy derivative. Furthermore, the hydroxyl group at C-2 is
involved in a minor polar interaction with CL-16. This group does not
contribute to the binding to CL-14 since the affinity is not affected
by deoxygenation at C-2, as in methyl 2-deoxy- -lactoside and lactal
which lacks the hydroxyl groups at C-1 and C-2. Therefore, the
N-acetyl NH group in N-acetyllactosamine
may be involved in hydrogen bonding to CL-16 but not to CL-14. The
higher affinity of both lectins for N-acetyllactosamine than
for lactose could be the result of other interactions, possibly van der
Waals interactions, between the N-acetyl group and protein
residues of the combining site, as it has been proposed for bovine
galectin-1 (18). Overall, the glucose moiety of methyl -lactoside
apparently interacts more strongly with CL-16 than with CL-14. Thus,
when the Kd values of galactose and lactose are
compared, the increase in affinity should be larger for CL-16 than for
CL-14. Indeed, this predicted difference is experimentally detected
(Table I).
Energetic Contribution of the Hydroxyl Groups to the
Binding
The free energy contributions of individual hydroxyl
groups (Table II) were estimated from the loss in
affinity for the deoxy derivatives compared with methyl -lactoside
using Equation 1
|
(Eq. 1)
|
When the affinity of the deoxy derivative was too low to assess
the Kd value, it was considered that the
contribution of the corresponding hydroxyl group should be higher than
the ( G0) value calculated on the basis of
the highest measurable Kd, i.e. higher
than 9 kJ/mol. Since it has been reported that deletion of hydrogen
bonds involving uncharged donor-acceptor pairs weakens binding by 2-6
kJ mol 1 and that hydrogen bonds involving neutral-charged
pairs can be responsible for greater G0
changes (22, 23), on the basis of the calculated
( G0) values it is possible to make
assumptions about the nature of the groups of a lectin involved in
hydrogen bonding. Although the ( G0) values
in Table II reflect the overall strength of hydrogen bonds donated and
accepted by a given hydroxyl, the role of the key HO-4 and HO-6
groups as hydrogen bond donors to charged groups of the lectins can be
stressed on the basis of the binding data obtained for the fluorodeoxy
analogues at these positions, as it has been previously discussed in
detail for bovine galectin-1 (18). On the other hand, the
( G0) values associated with the removal of
the other hydroxyl groups involved in the binding indicate the
participation of neutral groups of the protein with the possible
exception of the CL-16 partner for HO-3. In this case, the loss in
affinity can well be explained by the deletion of one strong hydrogen
bond with a charged group of the lectin or by the deletion of at least
two weaker hydrogen bonds involving neutral pairs.
DISCUSSION
The salient conclusion derived from this study is that the
carbohydrate-binding properties of the two chicken lectins show a
number of so far unknown significant differences of possible biological
relevance besides substantial similarities. First, the binding
capability of the lectins is affected in a very different degree by the
protein labeling and storage conditions, CL-14 appearing much more
sensitive to potentially damaging conditions such as tyrosine
iodination under an oxidizing environment or freezing. Second, although
the main atomic features in the recognition of methyl -lactoside are
preserved, involving positions 4 and 6 of galactose and position 3 of
glucose, there are notable differences in the mode of binding that
suggest a different architecture of the combining site.
The mode of binding of methyl -lactoside to CL-16 is very similar to
that previously observed for bovine galectin-1 (18). The only
significant difference relates to the effect of the introduction of a
methyl group at position 2 of the galactose unit. For bovine
galectin-1 this results in an enhancement of the binding, suggesting
new favorable interactions generated by the methyl group that may come
into contact with hydrophobic residues at the periphery of the
combining site. However, this enhancement is not observed for the
chicken lectin. On the other hand, the contribution of the hydroxyl
group at position 3 of galactose seems to be slightly stronger for the
chicken lectin than for the bovine agglutinin. Both results suggest a
somehow different orientation of the bound sugar within the combining
site, but in general the hydrogen bonding and steric requirements for
recognition by CL-16 appear highly homologous to those exhibited by the
mammalian galectin-1.
The sequence homology between CL-16 and CL-14 does not translate into
identical features of ligand recognition. Explicitly, the mode of
binding observed for CL-14 shows a number of significant differences.
The first one is a clearly higher affinity of this lectin for the
binding of galactose as compared with CL-16 and the bovine lectin.
Surprisingly, polar interactions at the galactose unit in methyl
-lactoside are apparently only similar or even weaker and not
sufficient to account for this increased affinity. A possible
explanation could be a stronger interaction of nonpolar residues of the
combining site of CL-14 with the hydrophobic surface patches of this
sugar residue. The second difference is that the contribution to the
binding by the glucose unit, although still important, is significantly
decreased. Its hydroxyl group at C-2 in methyl -lactoside and, by
extrapolation, the N atom in N-acetyllactosamine are
not measurably involved in the binding. Moreover, the
contribution of hydrogen bonds at position 3 is smaller than for the
other two lectins. It is noteworthy with respect to discriminatory
characteristics that CL-14's binding site can accommodate an axial
hydroxyl group at this position, which is not possible for CL-16 or
bovine galectin-1.
Recently, it has been proposed (24) that the combining sites of
galectins can be classified into two types on the basis of the presence
of conserved and variable amino acid residues involved in the
recognition. According to the known fine carbohydrate-binding
specificity of several galectins, the type I or conserved
carbohydrate-recognition domain, found in galectin-1 from several types
of mammals, shows very strict requirements for the orientation of
substituents at position 3 of GlcNAc in Gal (1,4)GlcNAc (equivalent
to position 4 of GlcNAc in Gal (1,3)GlcNAc), whereas the type II or
variable positioning, found in galectin-2, -3, and -4 and in other
galectins from lower vertebrates and invertebrate species, is able to
accommodate an axial hydroxyl group at this position. Therefore, the
type II site is apparently able to bind Gal 1-3GalNAc, in which the
axial HO-4 of GalNAc takes the place of the axial HO-3 in the
3-epi-methyl -lactoside derivative. In the light of the sequence
identities from residues 44 to 73, which form the
carbohydrate-recognition domain, both chicken lectins have been
proposed to contain type I combining sites (24). According to our
results on the molecular recognition of methyl -lactoside analogues,
the mode of binding observed for CL-16 is in agreement with this
prediction. However, the ability of CL-14 to bind the 3-epi derivative
is, according to this classification scheme, evidently characteristic
of a type II carbohydrate-recognition domain. It is presently difficult
to precisely explain this particular behavior, since the residues
primarily involved in ligand recognition are invariant in the sequences
of bovine galectin-1 and the two chicken lectins (Fig.
3). However, there are variable residues within the
sequences that encompass the carbohydrate-recognition domains, the
presence of which could result in a slightly different spatial
disposition of side chains directly involved in the binding. For
instance, the common Thr-57 is substituted by Leu in CL-14. Molecular
dynamic simulations of the possible consequences of this substitution
in the combining site of bovine galectin-1 (Fig. 4)
reveal a slight but significant displacement of the lateral chain of
Arg-73, which is a key residue involved in interactions with the
hydroxyl group at position 3 of the glucose moiety and the
N-acetyl group of N-acetyllactosamine as well as
in a network of salt bridges which assures the optimal orientation of
other relevant amino acid residues (16).
Fig. 3.
Alignment of amino acid sequences of bovine
galectin-1, CL-14, and CL-16 between residues 44 and 73. The
residues of CL-14 and CL-16 that are identical to those of bovine
galectin-1 are omitted. Asterisks denote residues that are
directly in contact with the sugar in the crystal structure of the
galectin-1·N-acetyllactosamine complex (16). The
bars indicate residues in -strands. The sequences are
compiled on the basis of published information (6, 7, 25) for bovine
galectin-1, CL-14, and CL-16.
Fig. 4.
Stereo view of the carbohydrate-binding site
of bovine galectin-1 upon substitution of Thr-57 by Leu.
Coordinates for the structure of bovine galectin-1 in complex with
N-acetyllactosamine were taken from the Brookhaven Protein
Data Bank (Reference 1SLT). In subunit A, Thr-57 was replaced by Leu
using the TURBO-FRODO package, and a PDB file with these new
coordinates was used for molecular dynamics simulation using the X-PLOR
program (26). The resulting structure (bold lines) is shown
superimposed on the x-ray crystal structure (thin lines).
The arrow points out the displacement of the lateral chain
of Arg-73.
In aggregate, the observed mode of binding for the panel of synthetic
ligand derivatives provides information on the molecular basis of
oligosaccharide-binding specificity. Thus, both lectins will bind to
oligosaccharides containing the basic structure Gal (1,4)GlcNAc or
its isomer Gal (1,3)GlcNAc. Substitution of the backbone sequence at
positions 2 and 3 of the galactose moiety should not prevent binding
by the lectins. On the contrary, binding will be hampered by
substitutions at the key positions, namely positions 4 and 6 of
galactose and position 3 of N-acetylglucosamine in
Gal (1,4)GlcNAc (or position 4 in Gal (1,3)GlcNAc). Although these
general rules are valid for both CL-14 and CL-16, the observed
differences in the contribution to the binding of distinct hydroxyl
groups for the two lectins will most probably result in a different
range of affinities for various oligosaccharides. In particular, it can
be assumed that the structure Gal (1,3)GalNAc, which is
characteristic of many glycolipid antigens specifically expressed at
certain developmental stages (27), should be differentially recognized
by CL-14 and CL-16. Thus, the results suggest overlapping but distinct
ranges of endogenous ligands for the two lectins and in general terms
illustrate the potential usefulness of this chemical-mapping approach
for delineation of ligand-binding differences between homologous
lectins.
FOOTNOTES
*
This work was supported by Grants SAF 92-0497 and PB 93-0120
from the Dirección General de Investigación
Científica y Técnica, Grant 93/0317 from Fondo de
Investigaciones Sanitarias, and Grant Ga 349/7-1 from the Deutsche
Forschungsgemeinschaft. The costs of publication of this
article were defrayed in part by the
payment of page charges. The article
must therefore be hereby marked
``advertisement'' in
accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
§
To whom correspondence should be addressed. Tel.: 34-1-5619400;
Fax: 34-1-5642431.
Acknowledgments
We gratefully acknowledge Dr. Jesús
Jiménez-Barbero for kindly providing some synthetic derivatives
on request.
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