|
Volume 271, Number 25,
Issue of June 21, 1996
pp. 14672-14675
©1996 by The American Society for Biochemistry and Molecular Biology, Inc.
COMMUNICATION:
Mapping the Binding Site Pocket of the Serotonin
5-Hydroxytryptamine2A Receptor
Ser3.36(159) PROVIDES A SECOND INTERACTION
SITE FOR THE PROTONATED AMINE OF SEROTONIN BUT NOT OF LYSERGIC ACID
DIETHYLAMIDE OR BUFOTENIN*
(Received for publication, April 17, 1996)
Niva
Almaula
,
Barbara J.
Ebersole
§¶,
Daqun
Zhang
,
Harel
Weinstein
¶ and
Stuart C.
Sealfon
''
From the Fishberg Research Center in Neurobiology,
Departments of § Anesthesiology, Physiology and
Biophysics, ¶ Pharmacology, and '' Neurology, Mount Sinai School of
Medicine, New York, New York 10029
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS AND DISCUSSION
FOOTNOTES
Acknowledgments
REFERENCES
ABSTRACT
Like other amine neurotransmitters that activate
G-protein-coupled receptors, 5-hydroxytryptamine (5-HT) binds to the
5-HT2A receptor through the interaction of its cationic
primary amino group with the conserved Asp3.32(155) in
transmembrane helix 3. Computational experiments with a
5-HT2A receptor model suggest that the same functional
group of 5-hydroxytryptamine also forms a hydrogen bond with the side
chain of Ser3.36(159), which is adjacent in space to
Asp3.32(155). However, other 5-HT2A receptor
ligands like lysergic acid diethylamide (LSD), in which the amine
nitrogen is embedded in a heterocycle, or N,N-dimethyl
5-HT, in which the side chain is a tertiary amine, are found in the
computational simulations to interact with the aspartate but not with
the serine, due mainly to steric hindrance. The predicted difference in
the interaction of various ligands in the same receptor binding pocket
was tested with site-directed mutagenesis of Ser3.36(159)
Ala and Ser3.36(159) Cys. The alanine substitution
led to an 18-fold reduction in 5-HT affinity and the cysteine
substitution to an intermediate 5-fold decrease. LSD affinity, in
contrast, was unaffected by either mutation. N,N-Dimethyl
5-HT affinity was unaffected by the cysteine mutation and had a
comparatively small 3-fold decrease in affinity for the alanine mutant.
These findings identify a mode of ligand-receptor complexation that
involves two receptor side chains interacting with the same functional
group of specific serotonergic ligands. This interaction serves to
orient the ligands in the binding pocket and may influence the degree
of receptor activation.
INTRODUCTION
One goal of structure-activity studies of G-protein-coupled
receptors (GPCR)1 is to develop an
understanding of the nature and consequences of ligand-receptor
interactions at a molecular level. The serotonin 5-HT2A
receptor is a member of the GPCR superfamily for which such studies
have identified key interactions in the ligand-receptor complexes
(1, 2, 3, 4, 5, 6, 7, 8, 9). One notable group of ligands for this receptor are the
serotonergic hallucinogens, such as LSD (lysergic acid diethylamide)
and N,N-dimethyl 5-HT (bufotenin), which have high affinity
for the 5-HT2A receptor. Studying the receptor's binding
pocket and identifying the molecular mechanisms that determine ligand
affinity, specificity, and coupling efficiency may help elucidate the
basis for the special biological effects of these chemicals.
The principal binding determinants of neurotransmitter GPCRs have been
most fully elucidated in the adrenergic receptors (for review see Refs.
10 and 11), where they are located within the helical transmembrane
domains. The 5-HT2A receptor, like the other receptors for
biogenic amines, including the adrenergic, dopaminergic, and muscarinic
receptors, has an aspartate residue at a homologous location in the
putative third transmembrane helix (TMH) domain (Ref. 12; see Fig.
1). Site-directed mutagenesis studies with these
receptors indicate that, for most ligands, an interaction between the
basic nitrogen of the ligand and the carboxyl side chain of the TMH 3 aspartate stabilizes ligand binding (5, 13, 14, 15, 16, 17).
Fig. 1.
Helical net representation of TMH 3 of the
5-HT2A receptor showing the position of the conserved
aspartate in neurotransmitter GPCRs, Asp3.32(155), and of
Ser3.36(159).
Simulations of ligand-receptor complexes of the 5-HT2A
receptor using a three-dimensional computational model (6, 7) suggest a
complex array of interactions connecting TMH 3 side chains and specific
ligands. The same charged amino group of 5-hydroxytryptamine that
interacts with the TMH 3 aspartate is predicted to form a hydrogen bond
with the side chain of a second TMH 3 locus, Ser3.36(159).
In the molecular model of the receptor, this residue is positioned on
the same face of the helix as Asp3.32(155). It forms a
hydrogen bond to the backbone carbonyl of the residue at position
i 4 from it, as expected (17). The simulations show
a very favorable positioning of the cationic amine group of 5-HT for
hydrogen bonding both the aspartate and the serine. However, some other
serotonergic ligands, such as LSD and N,N-dimethyl 5-HT, are
found to be unable to hydrogen bond that serine because of the steric
hindrance introduced by the groups surrounding the amine in the ligand.
Extensive simulations show that the ligands in which the amino group is
ring-embedded or dimethyl-substituted would interact only with the
aspartate side chain.2 Because these
predictions, if validated, provide a fine resolution mapping of this
component of the binding pocket that may explain why ligands vary in
their capacity to activate the receptor, this hypothesis was tested by
mutating Ser3.36(159) Ala and Ser3.36(159)
Cys. The results from ligand binding experiments with the mutant
receptors were analyzed with respect to the inferences from molecular
dynamic simulations of the receptor-ligand complexes.
MATERIALS AND METHODS
Chemicals
LSD and N,N-dimethyl 5-HT were
obtained from NIDA, National Institutes of Health. All other unlabeled
ligands were from Sigma or Research Biochemicals
International (Natick, MA).
Receptor Numbering Scheme
Residues are numbered according
to a consensus numbering scheme described in detail elsewhere (18). The
TMH 3 residues are numbered in reference to the most conserved residue
in this helix, which is the arginine at the bottom of the helix. This
most conserved locus is designated 3.50; adjacent residues are 3.49 and
3.51. The residue number in parentheses indicates the amino acid
identity using standard amino-terminal based numbering. Thus the TMH 3 aspartate conserved among neurotransmitters is designated
Asp3.32(155) in the 5-HT2A receptor, and the
serine studied here is Ser3.36(159).
DNA Constructs and Transfection
The cDNA clone encoding
the human 5-HT2A receptor was graciously provided by Dr.
Alan Saltzman (19). Mutations were introduced as described previously
(9). The expression vectors, pcDNA-Amp (binding assays) or
pcDNA-3 (functional assays; Invitrogen, San Diego, CA) were used to
transfect COS-1 cells (ATCC, Rockville, MD) using Lipofectamine (Life
Technologies, Inc.).
Coupling and Ligand Binding Assays
Hydrolysis of
[3H]phosphatidylinositol was assayed as described
previously (9). Saturation and competition assays using
[3H]ketanserin (DuPont NEN) were carried out as described
previously (9). Nonspecific binding was defined with 10 µM methysergide. For competition studies, the
concentration of [3H]ketanserin was 0.7-1.2
nM. Protein content was determined by the method of Lowry
(20). Each binding assay tube contained 30-60 µg of membrane
protein.
Data Analysis
Curve-fitting for data from saturation,
competition, and phosphatidylinositol assays was carried out with the
graphics software Kaleidagraph (Synergy Software, Reading, PA) as
described previously (9).
Molecular Modeling of 5-HT2A Receptor Mutants and
Computational Simulations of Interactions with Ligands
The model
of the transmembrane helix bundle of the 5-HT2A receptor
and its development have been reported previously (7, 22). A primary
objective in the early development of this model was to reflect the
pharmacological data on the structure-activity relations of
5-HT2A receptor ligands. The close agreement between the
results from computational simulations of the effects of ligand binding
with this receptor model and quantitative pharmacological data (6, 7, 8, 9)
supports its use to explore the role of Ser3.36(159) in the
interaction with specific ligands.
The molecular models were energy-optimized, and molecular dynamics runs
were carried out with the CHARMM program (23), using the same protocol
as described previously (7). 5-HT, N,N-dimethyl 5-HT, and
LSD were positioned in the binding site in the same manner as
described, to preserve the equivalence of their initial positioning in
the binding pocket (7). The same parameters for molecular dynamic
simulations were used as reported previously (7). Simulation of the
ligand/receptor complexes were carried out for >200 ps, and the
equilibrated structures of the ligand/receptor complex were obtained
from the energy-minimized average over the final period of the
simulation covering the last 100 ps, as described (7).
RESULTS AND DISCUSSION
Affinities of Wild-type and Mutant Receptors
The
hypothesis that ligands differ in their interaction with
Ser3.36(159) was tested by mutating this residue to
cysteine and to alanine and by characterizing the wild-type and mutated
receptors when expressed in COS-1 cells. The receptor mutants had
comparable affinities for ketanserin, as determined by saturation
binding (Table I).
Table I.
Binding affinities of the wild-type and Ser3.36(159) mutant
receptors
Kd values for ketanserin and Bmax
values were obtained from saturation binding experiments (mean ± S.E. from 3-4 experiments). Ki values for 5-HT,
N,N-dimethyl 5-HT, and LSD were obtained from competition
binding experiments with [3H]ketanserin. Results are mean
±S.E. from 4 experiments.
| Receptor
construct |
Bmax |
Kd for
ketanserin |
Ki
|
| 5-HT |
N,N-dimethyl 5-HT |
LSD
|
|
|
fmol/mg |
nM |
nM
|
| Ser3.36(159) |
1009
± 170 |
0.84 ± 0.14 |
396 ± 107 |
162 ± 14 |
0.38
± 0.05 |
Ser3.36(159) Ala |
506 ± 86 |
1.1
± 0.14 |
6960 ± 1592 |
645 ± 88 |
0.54 ± 0.13
|
Ser3.36(159) Cys |
921 ± 157 |
0.66
± 0.04 |
1947 ± 528 |
224 ± 44 |
0.33 ± 0.04 |
|
The effects of the mutations studied on agonist affinity correlated
fully with the expectations from the computational modeling of the
wild-type and the alanine mutant complexes with the various
ligands.2 The affinity of 5-HT was greatly affected by the
alanine substitution (18-fold decrease), and the presence of cysteine
at this position caused an intermediate 5-fold decrease in affinity
(Fig. 2A). In contrast, the affinity of
the N,N-dimethyl congener of 5-HT, bufotenin, showed no
significant change with the cysteine mutation and a comparatively small
4-fold decrease in affinity with the alanine substitution (Fig.
2B). LSD affinity was not significantly affected by either
mutation (Fig. 2C).
Fig. 2.
Competition binding curves for
Ser3.36(159) mutant receptors. The structural formulas
for the compounds studied are shown, and the amine that interacts in
its cationic form with the TMH 3 acidic group is indicated by an
arrow. Results are representative of 4 independent
experiments. A, 5-HT competition; B,
N,N-dimethyl 5-HT competition; C, LSD
competition.
The affinity of the ligands for the mutant constructs is consistent
with the inference from the studies of many neurotransmitter receptors,
including the 5-HT2A receptor (5), that the interaction
with Asp3.32 provides a major component of the binding
affinity. The large decrease in the affinity of 5-HT found with
mutation of Ser3.36(159) is consonant with the effect of
elimination of a hydrogen bond-type interaction between the amino group
of serotonin and the serine side chain. Because the
Ser3.36(159) Cys mutant constructs were not subjected
to a complete dynamic modeling, the exact mechanism for the
intermediate affinity changes is less clear. Notably, the cysteine side
chain is a less favorable hydrogen bond acceptor than is that of serine
(24), so that the moderate effect on 5-HT affinity seen with the
cysteine mutation may reflect a weaker interaction between the mutant
side chain and the cationic amine group of 5-HT. In contrast, the
cationic amine of LSD is embedded in a ring, as shown in Fig.
2C, and is not available for the secondary hydrogen bonding.
The correspondence of the ring nitrogen of LSD to the alkyl nitrogen of
5-HT is consistent with known structure-activity data (25). The lack of
effect on LSD affinity of either substitution for the wild-type serine
indicates that there is no interaction between serine and LSD in the
wild-type receptor. The affinity of N,N-dimethyl 5-HT is
unaffected by the cysteine mutation, and a very small decrease in
affinity is observed with the alanine substitution. In view of the
large changes seen with the same mutations for 5-HT, the relatively
small decrease in N,N-dimethyl 5-HT affinity seen with one
of the mutations is likely to represent an indirect effect arising from
altered positioning of other side chains in the binding pocket of the
Ser Ala mutant. Because of its dimethyl substitution, the basic
nitrogen of this ligand could not hydrogen-bond to the serine and also
interact with the aspartate. The comparison of the results obtained
with 5-HT, N,N-dimethyl 5-HT, and LSD support the presence
of a direct interaction with the serine side chain only for 5-HT.
Molecular Dynamic Simulations of Ligand-Receptor
Complexes
The ligands studied in binding assays were also studied
in molecular dynamics simulations of ligand-receptor complexes. The
results of these simulations are shown in Fig. 3. In the
5-HT-complexed serotonin receptor model, the amino group is positioned
equidistant from the side chains of the aspartate and the serine (Fig.
3A). The distance from the serine, 1.8 Å, is an appropriate
distance for hydrogen bonding. In contrast, the corresponding amines
both in N,N-dimethyl 5-HT (Fig. 3B) and in LSD
(Fig. 3C) are located at nearly 5 Å from the serine side
chain, too great a distance for efficient hydrogen bond formation.
Thus, while all three agonists interact with the aspartate side chain,
only 5-HT interacts with the serine.
Fig. 3.
Position of ligands interacting with TMH 3 obtained from molecular dynamic simulations of ligand-receptor
complexes. Data were obtained from a full computational model of
the ligand-complexed 5-HT2A receptor. For clarity, only
part of TMH 3 with the side chains of Asp3.32(155) and
Ser3.36(159) is shown. Distances are the separation of the
functional groups in the energy-minimized average structure resulting
from the simulation with the wild-type 5-HT2A receptor model. A, 5-HT-receptor complex;
B, N,N-dimethyl 5-HT-receptor complex;
C, LSD-receptor complex. The distance between
Asp3.32(155) and the cationic amine of LSD is 2.8 Å.
Consequences of Interaction with Ser3.36(159)
The
presence or absence of a hydrogen bond with Ser3.36(159)
plays a definable role in the positioning of agonists in the binding
pocket. The ligands 5-HT and N,N-dimethyl 5-HT, for example,
differ only in the presence of the dimethyl substitution of the amine
nitrogen (Fig. 2, A and B). We demonstrate by
congruent results of mutagenesis and computational simulations that the
major effect of this substitution is to eliminate the hydrogen bond
with Ser3.36(159) and, thereby, to alter the orientation of
the ligand with respect to its dominant TMH 3 site of interaction,
Asp3.32(155).
The altered positioning of structurally similar ligands may provide an
explanation for their differing functional effects. Notably, both
N,N-dimethyl 5-HT and LSD are partial agonists for the
5-HT2A receptor. A variety of experiments suggest that TMH
3 provides a crucial anchor for neurotransmitter agonists and
that the precise positioning of a ligand with respect to TMH 3 can
determine its ability to activate the receptor. Strader et
al. found that altering the length of the TMH 3 acidic side chain
of the -adrenergic receptor, by mutating
Asp3.32(113) Glu, caused some antagonists to
develop partial agonist activity (21). This result shows that the
capacity of the ligand to activate the receptor relates to its
positioning between TMH 3 and other interaction sites. In molecular
dynamic simulations of ligand-receptor complexes, we have found that
partial agonists cause a smaller degree of helix rearrangement than do
full agonists, whether they are structurally related to 5-HT (7) or to
other families of 5-HT2A ligands (8). It is expected,
therefore, that the ability of a ligand to activate a receptor depends
on the geometrical arrangement of the ligand in the ligand-receptor
complex. As the presence or absence of an interaction with the second
TMH 3 site in the 5-HT2A receptor,
Ser3.36(159), alters this geometry, it can determine the
differing potential of closely related compounds to activate the
receptor.
The contribution of the interaction with Ser3.36(159) in
positioning the ligand and thereby determining efficacy is supported by
the concentration-response curves obtained with the wild-type and
Ser3.36(159) Ala mutant receptors. Whereas
N,N-dimethyl 5-HT is a partial agonist for the wild-type
receptor (Fig. 4A), the intrinsic activities
of 5-HT and N,N-dimethyl 5-HT are similar for the
Ser3.36(159) receptor mutant (Fig. 4B). The
intrinsic activity of N,N-dimethyl 5-HT relative to 5-HT was
0.73 ± 0.07 for the wild-type receptor and 0.96 ± 0.13 for the mutant
(n = 4, p < 0.05).
Fig. 4.
Concentration-response curves of
phosphatidylinositol hydrolysis with 5-HT and N,N-dimethyl
5-HT stimulation. A, wild-type receptor; B,
Ser3.36(159) Ala mutant receptor. Results shown are
representative of 4 independent experiments.
We find that the free amino group of 5-HT interacts with a second side
chain of TMH 3 of the serotonin 5-HT2A receptor. To our
knowledge, this is the first example of two side chains of a receptor
interacting specifically with the same functional group on the ligand.
The positioning of the ligands in the binding site relates to their
ability to form this second hydrogen bonding interaction and can
influence their capacity to activate the receptor. The results
illustrate how a detailed map of the binding site pocket of the
serotonin 5-HT2A receptor obtained through combined
mutagenesis and dynamic receptor modeling can lead to a fuller
understanding of the molecular basis for the effects of serotonergic
ligands.
FOOTNOTES
*
This work was supported by National Institutes of Health
Grants RO1 DA09088, RO1 DA09083, T32 DA07135, and KO5 DA00060. The costs of publication of this
article were defrayed in part by the
payment of page charges. The article
must therefore be hereby marked
``advertisement'' in
accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
1
The abbreviations used are: GPCR,
G-protein-coupled receptor; LSD, lysergic acid diethylamide; 5-HT,
5-hydroxytryptamine; TMH, transmembrane helix.
2
D. Zhang and H. Weinstein, manuscript in
preparation.
''
To whom correspondence should be addressed: Fishberg Center for
Neurobiology Research, Box 1065, Mount Sinai School of Medicine, One
Gustave Levy Pl., New York, NY 10029. Tel.: 212-241-7075; Fax:
212-996-9785.
Acknowledgments
We thank Dr. Saul Maayani for helpful
discussions and Irina Ivanova for superb technical assistance.
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J. A. Ballesteros, L. Shi, and J. A. Javitch
Structural Mimicry in G Protein-Coupled Receptors: Implications of the High-Resolution Structure of Rhodopsin for Structure-Function Analysis of Rhodopsin-Like Receptors
Mol. Pharmacol.,
July 1, 2001;
60(1):
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[Abstract]
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I. Visiers, S. A. Hassan, and H. Weinstein
Differences in conformational properties of the second intracellular loop (IL2) in 5HT2C receptors modified by RNA editing can account for G protein coupling efficiency
Protein Eng. Des. Sel.,
June 1, 2001;
14(6):
409 - 414.
[Abstract]
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M. C. Gershengorn and R. Osman
Minireview: Insights into G Protein-Coupled Receptor Function Using Molecular Models
Endocrinology,
January 1, 2001;
142(1):
2 - 10.
[Abstract]
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D. A. Shapiro, K. Kristiansen, W. K. Kroeze, and B. L. Roth
Differential Modes of Agonist Binding to 5-Hydroxytryptamine2A Serotonin Receptors Revealed by Mutation and Molecular Modeling of Conserved Residues in Transmembrane Region 5
Mol. Pharmacol.,
November 1, 2000;
58(5):
877 - 886.
[Abstract]
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K. Kristiansen, W. K. Kroeze, D. L. Willins, E. I. Gelber, J. E. Savage, R. A. Glennon, and B. L. Roth
A Highly Conserved Aspartic Acid (Asp-155) Anchors the Terminal Amine Moiety of Tryptamines and Is Involved in Membrane Targeting of the 5-HT2A Serotonin Receptor But Does Not Participate in Activation via a "Salt-Bridge Disruption" Mechanism
J. Pharmacol. Exp. Ther.,
June 1, 2000;
293(3):
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[Abstract]
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S. Barroso, F. Richard, D. Nicolas-Etheve, J.-L. Reversat, J.-M. Bernassau, P. Kitabgi, and C. Labbe-Jullie
Identification of Residues Involved in Neurotensin Binding and Modeling of the Agonist Binding Site in Neurotensin Receptor 1
J. Biol. Chem.,
January 7, 2000;
275(1):
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[Abstract]
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J. Sanders, Y. Oda, S. Roberts, A. Kiddie, T. Richards, J. Bolton, V. McGrath, S. Walters, D. Jaskolski, J. Furmaniak, et al.
The Interaction of TSH Receptor Autoantibodies with 125I-Labelled TSH Receptor
J. Clin. Endocrinol. Metab.,
October 1, 1999;
84(10):
3797 - 3802.
[Abstract]
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B. L. Roth, D. L. Willins, K. Kristiansen, and W. K. Kroeze
Activation is Hallucinogenic and Antagonism is Therapeutic: Role of 5-HT2A Receptors in Atypical Antipsychotic Drug Actions
Neuroscientist,
July 1, 1999;
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254 - 262.
[Abstract]
[PDF]
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J. Ballesteros, S. Kitanovic, F. Guarnieri, P. Davies, B. J. Fromme, K. Konvicka, L. Chi, R. P. Millar, J. S. Davidson, H. Weinstein, et al.
Functional Microdomains in G-protein-coupled Receptors. THE CONSERVED ARGININE-CAGE MOTIF IN THE GONADOTROPIN-RELEASING HORMONE RECEPTOR
J. Biol. Chem.,
April 24, 1998;
273(17):
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[Abstract]
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M. Han, M. Groesbeek, T. P. Sakmar, and S. O. Smith
The C9 methyl group of retinal interacts with glycine-121 in rhodopsin
PNAS,
December 9, 1997;
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[Abstract]
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B. L. Roth, M. Shoham, M. S. Choudhary, and N. Khan
Identification of Conserved Aromatic Residues Essential for Agonist Binding and Second Messenger Production at 5-Hydroxytryptamine2A Receptors
Mol. Pharmacol.,
August 1, 1997;
52(2):
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[Abstract]
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S. C. Sealfon, H. Weinstein, and R. P. Millar
Molecular Mechanisms of Ligand Interaction with the Gonadotropin-Releasing Hormone Receptor
Endocr. Rev.,
April 1, 1997;
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[Abstract]
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M. Han, S. W. Lin, S. O. Smith, and T. P. Sakmar
The Effects of Amino Acid Replacements of Glycine 121on Transmembrane Helix 3of Rhodopsin
J. Biol. Chem.,
December 13, 1996;
271(50):
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[Abstract]
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M. Han, S. W. Lin, M. Minkova, S. O. Smith, and T. P. Sakmar
Functional Interaction of Transmembrane Helices 3and 6in Rhodopsin. REPLACEMENT OF PHENYLALANINE 261BY ALANINE CAUSES REVERSION OF PHENOTYPE OF A GLYCINE 121REPLACEMENT MUTANT
J. Biol. Chem.,
December 13, 1996;
271(50):
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[Abstract]
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Y.-M. Sun, C. A. Flanagan, N. Illing, T. R. Ott, R. Sellar, B. J. Fromme, J. Hapgood, P. Sharp, S. C. Sealfon, and R. P. Millar
A Chicken Gonadotropin-releasing Hormone Receptor That Confers Agonist Activity to Mammalian Antagonists. IDENTIFICATION OF D-LYS6 IN THE LIGAND AND EXTRACELLULAR LOOP TWO OF THE RECEPTOR AS DETERMINANTS
J. Biol. Chem.,
March 9, 2001;
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[Abstract]
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H. Frang, V. Cockcroft, T. Karskela, M. Scheinin, and A. Marjamaki
Phenoxybenzamine Binding Reveals the Helical Orientation of the Third Transmembrane Domain of Adrenergic Receptors
J. Biol. Chem.,
August 10, 2001;
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[Abstract]
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Copyright © 1996 by the American Society for Biochemistry and Molecular Biology.
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