![]()
|
|
||||||||
(Received for publication, December 18, 1995, and in revised form, March 29, 1996)
From the As deduced from cDNA clones, the catalytic
domain of Bungarus fasciatus venom acetylcholinesterase
(AChE) is highly homologous to those of other AChEs. It is, however,
associated with a short hydrophilic carboxyl-terminal region,
containing no cysteine, that bears no resemblance to the alternative
COOH-terminal peptides of the GPI-anchored molecules (H) or of other
homomeric or heteromeric tailed molecules (T). Expression of complete
and truncated AChE in COS cells showed that active hydrophilic monomers
are produced and secreted in all cases, and that cleavage of a very
basic 8-residue carboxyl-terminal fragment occurs upon secretion. The
COS cells produced Bungarus AChE about 30 times more
efficiently than an equivalent secreted monomeric rat AChE. The
recombinant Bungarus AChE, like the natural venom enzyme,
showed a distinctive ladder pattern in nondenaturing electrophoresis,
probably reflecting a variation in the number of sialic acids.
By mutagenesis, we showed that two differences (methionine instead of
tyrosine at position 70; lysine instead of aspartate or glutamate at
position 285) explain the low sensitivity of Bungarus AChE
to peripheral site inhibitors, compared to the
Torpedo or mammalian AChEs. These results illustrate the
importance of both the aromatic and the charged residues, and the fact
that peripheral site ligands (propidium, gallamine,
D-tubocurarine, and fasciculin 2) interact with diverse
subsets of residues.
Acetylcholinesterase (AChE,1 EC) is a very efficient enzyme since it hydrolyzes acetylcholine
nearly as fast as allowed by diffusion (Quinn, 1987 In the AChE genes of vertebrates, Torpedo, and mammals, the
signal peptide and the catalytic domain are encoded by common exons,
followed by alternatively spliced sequences which encode distinct types
of short COOH-terminal regions, characterizing R (``read-through''),
H (``hydrophobic''), or T (``tailed'') subunits. These subunits
possess identical catalytic activity, but generate different molecular
forms. All forms of AChE described until now are oligomers of subunits
H and T (for a review, see Massoulié et al. (1993) In the venom of Bungarus fasciatus, as in other
Elapidae venoms, AChE is present as a soluble, hydrophilic
monomer.3 This type of AChE molecule has never been
described in significant proportion in other vertebrate tissues
in vivo.
Pharmacological studies have shown that AChE is inhibited by ligands
that do not bind at the active site, but at a ``peripheral site''
(Changeux et al., 1966; Taylor and Lappi, 1975). Extensive
studies of snake venom AChEs have shown that they differ widely in
their sensitivity to peripheral site ligands.2 Labeling and
mutagenesis experiments have shown that the peripheral site is located
at the mouth of the ``catalytic gorge'' (Sussman et al.,
1991 In this report, we describe cDNA clones encoding AChE from B. fasciatus venom. We show that the COOH-terminal region of this
enzyme is not homologous to either the H or the T peptides, and that it
undergoes a proteolytic processing. We analyzed the relationship
between these unusual features and the secretion of soluble monomers by
expressing the wild type venom AChE and modified COOH-terminal variants
in transfected COS cells. We also examined, by site-directed
mutagenesis, the role of two residues that differ between
Bungarus AChE and Torpedo or mammalian
AChEs, in the inhibition by peripheral site ligands.
B. fasciatus venom (batch 6) was from
the stock of Institut Pasteur. All salts and other reagents were from
Sigma (France), Merck (Darmstadt, Germany), or Prolabo (Paris, France).
PI-PLC from Bacillus thuringiensis was from Immunotech
(Marseilles, France); neuraminidase from Clostridium
perfringens was from Worthington (Coger, France), and
carboxypeptidase Y from yeast were from Boehringer (Mannheim, Germany).
Fasciculin 2 was a gift from Dr. Pierre Bougis (Marseilles, France).
The anti-FLAG M2 monoclonal antibody, recognizing the DYKDDDDK peptide,
was from Eastman Kodak (New Haven, CT). All oligonucleotides were from
Genset (Paris, France).
AChE from
B. fasciatus venom was purified by affinity chromatography
according to Massoulié and Bon (1976) B. fasciatus snakes were kindly
provided by Prof. Xiong Yu Liang and Dr. Zhang Yun (Kunming Institute
of Zoology, Academia Sinica, Kunming, Yunnan, China). The heads were
immediately frozen and stored in dry ice. The venom glands were
dissected, and total RNA was extracted using RNAsol (Bioprobe),
according to Chomczynski et al. (1987).
Polymerase chain reaction (PCR)
was performed using Taq polymerase (Life Technologies, Inc.
or Promega), and 10 pmol of each oligonucleotide in a final volume of
50 µl. The reaction tubes were overlaid with mineral oil (Sigma). We
used a PTC150 thermocycler (MJ Research). Alternatively, the
``hot-start'' method, in which Taq polymerase was added at
85 °C after a first denaturation step, was used for RT-PCR or RACE
experiments. If necessary, the PCR products were cloned with the pGEM-T
kit (Promega). Double strand sequencing was performed with the
Sequenase 2.0 kit (U. S. Biochemical Corp.), following the supplier's
protocol.
Degenerate oligonucleotides, deduced
from known partial peptidic sequences,3 were used in RT-PCR
experiments. Approximately 1 µg of total RNA was reverse-transcribed
using 200 units of Superscript-MMLV reverse transcriptase (Life
Technologies, Inc.). cDNA was then purified using the QIAquick-spin
PCR purification kit (Qiagen). The eluate was diluted to 100 µl with
water, and 1 µl was used for PCR, using a combination of degenerate
primers. For a second PCR, we used a second set of internal primers and
1 µl of a 1/20 dilution of the first PCR product.
RACE experiments were done essentially as
described by Frohman et al. (1988) For 5 Poly(A)+ RNA was prepared from
total RNA with Oligotex-dT columns (Qiagen). 4 µg of these mRNAs
were used with the SuperScript plasmid system (Life Technologies, Inc.)
with some modifications: the oligonucleotide used for the ligation step
was an EcoRI adaptor (Pharmacia), and the cloning vector was
pT7T3D NotI/EcoRI/BAP (Pharmacia). The library
was then transformed into highly competent Escherichia coli
cells (XL1-blue-MRF 6 µg of total RNA from Bungarus
venom glands were loaded on a formaldehyde-agarose gel (1.5%) gel and
electrophoresed during 5 h under 100 V. The RNAs were transferred
overnight to a nylon membrane (Hybond, Amersham) using 10 × SSC buffer
and were fixed during 5 min by UV irradiation. The membranes were
prehybridized for 1 h at 42 °C in a medium containing 50%
formamide, 5 × SSC, 0.1% SDS, 2 × Denhardt's buffer. The probe was
prepared with 30 ng of purified PCR product, using the Hexaprime kit
(Boehringer, Mannheim, Germany) with 50 µCi of
[32P]dCTP (ICN), and purified in a S400 spin column
(Pharmacia). The denatured probe and salmon sperm DNA (100 µg/ml)
were added to the prehydridization solution and incubated overnight at
42 °C. The blots were first washed for 5 min in 4 × SSC at room
temperature, then once in 0.5 × SSC, 0.1% SDS at 65 °C and
autoradiographed overnight between two intensifying screens.
Modifications of the
COOH-terminal region were performed on the wild type SARA construction,
and point mutations in the catalytic domain were realized on the NAT
variant (see Fig. 5). Introduction of a stop codon for truncated
constructions, or insertion of a ``flag'' peptidic epitope at the
COOH terminus were performed with a reverse mutagenic oligonucleotide.
Two complementary mutagenic oligonucleotides were used for each point
mutation. We used the cDNA library clone as a template for PCR
reactions (Landt et al., 1990
For expression in COS
cells, the inserts were excised from the pT7T3D vector using
EcoRI and NotI (Pharmacia) and cloned in the
pCDNA3 vector (Invitrogen). Plasmidic DNA was prepared with the
Plasmid midi-kit (Qiagen). COS cells were generally transfected with
5-10 µg of DNA, using the DEAE-dextran method (Duval et
al., 1992 AChE was analyzed by
sedimentation in gradients containing 5% to 20% sucrose in 10 mM Tris-HCl, pH 7.0, 5 mM MgCl2,
either without detergent or in the presence of 1% Triton X-100 or
Brij-96. E. coli alkaline phosphatase (6.1 S) and E. coli Electrophoresis in nondenaturing conditions, in horizontal
10% polyacrylamide gels, was performed as described previously (Duval
et al., 1992 COS cells culture
medium containing about 5 × 10 For the kinetic
experiments, we used the culture medium containing the secreted AChE,
without further purification. As a control, we used PI-PLC-treated
dimeric AChE from Torpedo marmorata electric organs. AChE
activity was assayed in a reaction medium containing 50 mM
sodium phosphate, pH 7.4, 0.5 mM
5,5 The inhibition parameters were determined as above, after incubation of
the enzyme with the various inhibitors at 25 °C during 20-40 min
(the incubation time had no effect, since inhibition was very rapid).
For the determination of inhibition constants, Ki
and
For determination of the apparent first order rate constant
(kcat) by titration of active sites, we
incubated the enzyme overnight at 4 °C with various concentrations
of O-ethyl-S(2)-diisopropylaminoethyl
methylphosphonothionate (Vigny et al., 1978 We modeled the B. fasciatus venom
enzyme, using the first approach protocol proposed by Swiss-Model
(Peitsch, 1995 Primary Sequence of Bungarus Venom AChE
As will be
described in another report,3 we obtained partial peptidic
sequences from tryptic fragments of Bungarus venom AChE,
which could be unambiguously aligned with the sequence of
Torpedo AChE.4 Using RT-PCR
procedures with degenerate oligonucleotide probes based on these
sequences, we obtained a cDNA fragment of 520 bp. Using RACE
methods, from this fragment, we obtained the complete coding sequence,
as well as the 3
The catalytic domain of Bungarus
AChE shows more than 60% identity and 80% similarity with that of
Torpedo AChE (Fig. 2). It contains four potential
N-glycosylation sites, all of which correspond to
glycosylated positions in Torpedo or mammalian AChEs. The
six cysteines that form intramolecular disulfide loops in all
cholinesterases are conserved, and there is no other cysteine in the
sequence of the mature protein. The three residues that compose the
catalytic triad (Ser-200, Glu-327, and His-440, in Torpedo)
and the tryptophan residue that binds the quaternary ammonium group of
acetylcholine in the active site (Trp-84; Weise et al.,
1990 The Bungarus AChE is markedly less inhibited by peripheral
site ligands than Torpedo or mammalian AChEs.2
We therefore examined whether significant differences in aromatic or
charged residues would appear in the peripheral site. For this purpose,
we used a three-dimensional model of the Bungarus venom
enzyme, based on the structure determined for Torpedo by
Sussman et al. (1991)
In contrast with the catalytic domain,
the COOH-terminal sequence of Bungarus venom AChE shows no
homology with either the H or T COOH-terminal sequences of AChE from
Torpedo or other vertebrate species. In order to examine the
possible existence of other AChE transcripts in the Bungarus
venom gland, we hybridized Northern blots with a 600-bp probe located
in the catalytic domain, and with a 120-bp probe corresponding to the
3 The COOH-terminal region deduced from the coding sequence (Fig. 1) is a
short hydrophilic peptide of 15 residues containing two aspartic acids,
six arginines, and no cysteine.
The last three COOH-terminal residues of the mature protein purified
from Bungarus venom, RAD, are located near the middle of the
predicted COOH-terminal peptide. This shows that a highly charged
peptide of eight residues, including five arginines, is cleaved either
during biosynthesis in the venom gland, in the venom itself in
vivo, or during storage of the dry venom.
Expression in COS Cells: Production of Nonamphiphilic
Monomers
Several variants, differing in the length of the COOH-terminal
peptide, were produced in transfected COS cells. These variants are
named after their last COOH-terminal amino acids (Fig.
5). In SARA-flag, we introduced a ``flag'' epitope
after the SARA COOH terminus.
We determined the activity obtained in
cells that were maintained at 37 °C, and in cells that were
transferred to 27 °C after recovering from transfection (24 h at
37 °C), for the NAT, RAD, and SARA variants. For comparison, we
analyzed r-SAT, a rat equivalent of NAT that is limited to the
catalytic domain and produces a soluble monomeric form of rat
AChE.5 All constructions produced active
AChE. The activity was similar for NAT, RAD, and SARA: about 0.1 mg of
active enzyme/culture dish (106 cells), after 9 days at
37 °C; this activity was more than 30 times higher than for r-SAT.
Both Bungarus and rat enzymes were secreted (about 95% of
the total), and the level of activity was more than 3 times higher at
37 °C than at 27 °C.
The cellular and secreted recombinant
NAT, RAD, and SARA enzymes, like natural venom AChE, sedimented at 4.5 S, as single homogeneous molecular species. This sedimentation was
identical without detergent or in the presence of Triton X-100 or
Brij-96 (Fig. 6), showing that these monomers are
nonamphiphilic.
The migration in nondenaturing polyacrylamide gels of
the different COOH-terminal variants was not affected by the neutral
detergent Triton X-100, or by the anionic detergent sodium deoxycholate
(results not shown), confirming their nonamphiphilic character.
As in the case of the venom AChE,3 the three recombinant
enzymes NAT, RAD, and SARA produced electrophoretic ladder patterns
with 5-6 distinct bands, although it was difficult to determine their
exact number because their intensity decreased from the center toward
the edges of the pattern. We observed such patterns both in the
cellular (Fig. 7A) and secreted fractions
(Fig. 7B). The SARA cellular extract presented an additional
slower band, which will be discussed in the next section. The distances
between NAT and RAD enzymes, which differ by one charge unit, and
between K285D and NAT, which differ by two charges, suggest that the
ladder pattern results from increments of a single charge.
Treatment with neuraminidase essentially reduced the pattern to the
slowest two bands (Fig. 8), indicating that the
multiplicity of bands may correspond to a variation in the number of
sialic acids. In addition, the secreted SARA enzyme showed a higher
proportion of the slower migrating components when the enzyme was
synthesized at 27 °C rather than at 37 °C (Fig. 8), probably
because sialylation is less efficient at a lower temperature.
The nonamphiphilic, monomeric form of rat AChE, r-SAT, does not show
such a ladder pattern, although its structure and macromolecular
properties are equivalent to those of the Bungarus NAT
enzyme.
In the case of NAT and RAD, the secreted
and cellular enzymes presented a similar migration (Fig. 7). The
secreted SARA enzyme migrated exactly like RAD (Fig. 7B),
while a fraction of the cellular enzyme migrated much more slowly than
NAT or RAD (Fig. 7A). The same observation was made after
treatment by neuraminidase (data not shown). The slowly migrating
component probably corresponds to the complete SARA protein, in which
the negative charge is reduced by the presence of five COOH-terminal
arginines. Cleavage of this peptide would then occur upon secretion,
generating an enzyme like the RAD variant or the natural venom
enzyme.
In COS cells, the SARA-flag construction yielded a similar level of
AChE activity to the other COOH-terminal variants. A fraction of the
cellular enzyme was recognized by the anti-flag M2 monoclonal antibody,
as shown by a sedimentation shift from 4.5 S to 7.8 S in sucrose
gradients (Fig. 9) and by retardation of the active
enzyme in nondenaturing electrophoresis (data not shown). The
sedimentation of the secreted enzyme recovered from the culture medium
was unaffected by the antibody, showing that it had lost the flag
sequence. Cleavage of the hydrophilic COOH-terminal peptide therefore
occurs before secretion, both in the COS cells and in the venom glands.
The Role of Residues 70 and 285 in the Peripheral Site
We constructed point mutants of the NAT variant of
Bungarus AChE, containing one or both of the
Torpedo residues: M70Y, K285D, and M70Y/K285D. The three
mutants yielded the same level of activity secreted in the culture
medium as the recombinant wild type enzyme. The wild type and mutated
enzymes showed a similar excess substrate inhibition (Fig.
10). The Km and
Kss values are reported in Table
I. Compared to the wild type enzyme,
Km was slightly increased in the case of M70Y and
slightly decreased in the case of K285D. The Kss
values were not markedly altered by the mutations: the largest
difference, observed in the case of the double mutant, was less than
30% (Table I). In addition, titration of the active sites showed that
the four enzymes possessed the same catalytic turnover number,
kcat (not shown).
Kinetic parameters
Volume 271, Number 25,
Issue of June 21, 1996
pp. 15099-15108
©1996 by The American Society for Biochemistry and Molecular Biology, Inc.
A NEW TYPE OF COOH-TERMINAL DOMAIN; INVOLVEMENT OF A POSITIVELY
CHARGED RESIDUE IN THE PERIPHERAL SITE*
§¶,
,

Unité des Venins, Institut Pasteur, 28 rue du Dr Roux, 75015 Paris, France and § Laboratoire de
Neurobiologie, CNRS URA 1857, 46 rue d'Ulm, 75005 Paris, France
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
FOOTNOTES
Acknowledgments
REFERENCES
). It plays a key
role in the cholinergic system by rapidly inactivating acetylcholine
after its release at the synapse. Cholinesterases are also present in
noncholinergic contexts. For example, AChE and butyrylcholinesterase
(BChE, EC) are expressed early during embryonic development, in
somites and in other parts of the developing organism, well before the
appearance of cholinergic synapses (Drews, 1975
; Layer et
al., 1985
). In this case, AChE and BChE could be involved in the
formation, or the regulation, of acetylcholine gradients that could
guide the growth of nerve cells (Layer et al., 1988
). AChE
is also present at the surface of the red cells of some vertebrates or
in soluble form in the plasma, together with BChE (Toutant and
Massoulié, 1988
). In blood, AChE and BChE would play a
detoxification role (Neville et al., 1990
). It is more
surprising that the venom of some snakes, belonging to the family of
Elapidae, contain a high level of AChE (Kumar and Elliott,
1973
).2 The role of AChE in such venoms is
not known, since it is neither toxic by itself nor acting in a
synergistic manner with the toxic components of the
venom.3
).
The COOH-terminal region of H subunit contains a
glycophosphatidylinositol (GPI) addition signal, preceded by one or two
cysteines. H subunits generate GPI-linked dimers (amphiphilic forms of
type I). These forms are expressed in Torpedo muscles and
electric organs (Massoulié et al., 1992b
), as well as
in embryonic mammalian muscle (Legay et al., 1995
) and in
hematopoietic cells of adult mammals, but seem to be lacking in birds
(Massoulié et al., 1993
). The T subunits terminate
with a highly conserved peptide, containing a cysteine near its COOH
terminus. T subunits form dimers and tetramers, and associate with
structural anchoring proteins, forming collagen-tailed or
hydrophobic-tailed molecules. Probably because the T peptide contains
an amphiphilic
-helix, the monomers and dimers of the T subunits
interact with detergent or phospholipid micelles (amphiphilic forms of
type II) (Bon et al., 1988a
, 1991
). T subunits are generally
expressed in muscles and in nervous tissue. Although the third type of
subunit, R, is predicted to exist from cDNA sequences, the
corresponding enzyme has not been identified in vivo. The R
regions of Torpedo and mammals do not show any homology
(Sikorav et al., 1988; Rachinsky et al., 1990
).
They represent a ``read-through'' of the 3
genomic region that
immediately follows the last common catalytic exon, and is normally
spliced as an intron during processing of H or T in mRNAs. In all cases
where they have been found, R transcripts represent only a small
proportion of AChE in mRNAs, e.g. in embryonic rat liver
(Legay et al., 1993
) or embryonic mouse diaphragm (Legay
et al., 1995
), and thus may result from a splicing defect
without physiological significance.
), about 20 Å away from the active site (Berman et al.,
1980
; Kreienkamp et al., 1991
; Harel et al.,
1993
). In particular, it has been proposed that binding of propidium to
Trp-279 and surrounding residues induces an allosteric conformational
change, mediated through the catalytic gorge by residues Tyr-70,
Asp-72, Tyr-121, Tyr-130, and Tyr-334, eventually resulting in a
displacement of Trp-84 (Ordentlich et al., 1993
,
1995
; Barak et al., 1994
), which is involved in the
positioning of the substrate in the active site (Harel et
al., 1993
). The peripheral site seems to be quite variable among
AChEs. For example, chicken AChE is insensitive to propidium, with less
than 10% inhibition at a concentration of 2.5 mM, while
IC50 is 13 µM for Torpedo AChE in
the same conditions (Eichler et al., 1994
). This is probably
related to the fact that two aromatic residues involved in the binding
of propidium to Torpedo AChE (Tyr-70 and Trp-279) are
replaced in chicken AChE by methionine and glycine, respectively
(Randall et al., 1994
). AChE from Naja naja
oxiana venom has also been reported to lack a peripheral site,
since propidium is a poor inhibitor, Ki being
10-fold higher than for Torpedo AChE and, moreover, acts in
a purely competitive manner (Kreienkamp et al., 1991
).
It was thus interesting to analyze the sensitivity of the
Bungarus venom enzyme to propidium and other peripheral site
inhibitors.
Materials
. A sample containing 0.44 mg of AChE (6.4 nmol) was dialyzed against 50 mM sodium
acetate, pH 6, then mixed with 2.5 nmol of norleucine, 0.03% SDS, and
4.4 µg of carboxypeptidase Y, in a total volume of 800 µl. The
mixture was incubated at 25 °C; aliquots (80 µl) were removed
after 0, 1, 2, 5, 10, 20, 60, and 90 min, and added to 40 µl of 1%
trifluoroacetic acid, at 0 °C. Each aliquot was centrifuged through
an Ultrafree-MC filter (Millipore) with a cut-off at 10 kDa; the filter
was rinsed and recentrifuged with 50 µl of 0.1% trifluoroacetic
acid. The filtrates were dried in a Speed-Vac. Amino acids were
derivatized to PTC according to the recommendations of Applied
Biosystems, and analyzed by high pressure liquid chromatography.
Residues Asp, Ala, and Arg were successively removed from the COOH
terminus.
. For 3
RACE, the reverse
transcription was performed as described above, using the
oligonucleotide (dT)17-Ri-Ro
(Frohman et al., 1988
). 1 µl of the eluate was used for
the following PCR, using a specific primer and Ro. For a
second PCR, we used nested specific and Ri primers and 1 µl of a 1/20 dilution of the first PCR product.
RACE, we used the single strand ligation method (Dumas et
al., 1991
). The single strand DNA was obtained as for 3
RACE,
except that a biotinylated specific primer was used for reverse
transcription. The product was purified with Dynabeads (Dynal) coated
with streptavidin. 2.5 pmol of an oligonucleotide, complementary to
Ri-Ro, which had been phosphorylated in 3
and
blocked in 5
by addition of a ddTTP with terminal transferase
(Pharmacia Biotech Inc.), was ligated to the DNA in T4 RNA ligase
buffer, 25% polyethylene glycol 8000, with 20 units of T4 RNA ligase
(New England Biolabs) in a final volume of 10 µl, incubated more than
20 h at 20-22 °C. The ligated DNA was purified using
Dynabeads. 2 µl of the eluate were used for PCR, as described
above.
, Stratagene). The transformed bacteria were then
fractionated in 17 pools, each containing 104 clones, which
were plated on LB-ampicillin plates and grown overnight. LB medium (5 ml) was poured on the plates, and bacteria were recovered. The pools
were screened by PCR between a primer located in the vector and a
primer located in the 5
region of the cDNA. Six pools were
positive, and we selected two of them that yielded the longest 5
amplified fragments. The corresponding clones were isolated by
screening sub-pools of about 200 clones and, finally, plating and
screening independent colonies.
). The PCR products were cloned
in pGEM-T and fully sequenced. The plasmid was digested with
appropriate restriction enzymes (EcoRI-BstXI for
the M70Y mutant, BstXI-NotI for the K285D mutant,
and BglII-NotI for the COOH terminus variants),
and the insert was reintroduced into the original plasmid.
Fig. 5.
COOH-terminal peptides of
Bungarus AChE. The different COOH-terminal peptides
are named after their last amino acids. SARA corresponds to the
sequence encoded by the venom gland cDNA; RAD corresponds to the
mature sequence of the venom enzyme; NAT corresponds to a truncated
construction limited to the catalytic domain. These sequences are
compared with the rat H and T sequences, as well as with a truncated
rat sequence (r-SAT), which is equivalent to NAT.
). Cells were grown at 37 °C. In some experiments, as
indicated, the cells were transferred to 27 °C after 24 h at
37 °C.
-galactosidase (16 S) were mixed with the sample, as
standards of sedimentation coefficients. After centrifugation at 36,000 revolutions/minute for 18 h at 7 °C in a Beckman SW41 rotor,
about 45 fractions were collected from the bottom of the tubes and
assayed for the different enzymatic activities.
), and AChE activity was revealed by the method
of Karnovsky and Roots (1964)
.
3 Ellman units of
Bungarus AChE was diluted in 10 µl of 12.5 mM
sodium acetate buffer, pH 6.5, CaCl2 5 mM,
MgCl2 5 mM, containing 0.05 unit/ml
neuraminidase and incubated overnight at 37 °C. This incubation did
not modify the AChE activity. Treatment with PI-PLC was performed as
described previously (Duval et al., 1992
).
-dithiobis(2-nitrobenzoic acid), 0.01% bovine serum albumin, and
various concentrations of acetylthiocholine (0.01-10 mM),
at 25 °C. The reaction was monitored photometrically at 405 nm.
Km and Kss values were
determined using the Haldane equation. Alternatively,
Km was determined from Lineweaver-Burk plots, with
0.06-0.7 mM acetylthiocholine, and
Kss was determined by plotting of 1/V
as a function of substrate concentration (2-10 mM).
The equation fitting and graphic methods yielded the same results.
Ki, as defined in Scheme I, we used five
concentrations of acetylthiocholine (0.06-0.7 mM) and two
or three concentrations of inhibitor. For inhibition by fasciculin, we
first incubated approximately 10 pM AChE with fasciculin 2 overnight at 4 °C in a buffer containing 5 mM sodium
phosphate, pH 7.4, and 0.1% bovine serum albumin, in a final volume of
900 µl. The samples were then equilibrated at 25 °C for 30 min and
100 µl of a 10-fold concentrated Ellman assay medium was added, to a
final concentration of 50 mM sodium phosphate buffer, pH
7.4, 0.5 mM 5,5
-dithiobis(2-nitrobenzoic acid), and
acetylthiocholine (0.06-0.7 mM). The competitive
inhibition constant, Ki, was calculated by plotting
the relative slope defined by the Lineweaver-Burk representation (with
inhibitor versus without inhibitor) as a function of
inhibitor concentration; this yielded a straight line with a slope of
1/Ki. In a similar manner, the noncompetitive
inhibition constant,
Ki, was the inverse of the
slope obtained by replotting the relative intercept
(1/Vmax), from the Lineweaver-Burk
plots, as a function of inhibitor concentration.
Scheme I.
). The remaining
activity was then assayed as described above, with 0.8 mM
acetylthiocholine.
), with the structure of Torpedo californica
AChE as template (1ace.pdb; Sussman et al., 1991
). The
model obtained was then displayed using the RASMOL program.
-untranslated sequence and a short 5
noncoding
region. Because this sequence might contain errors introduced by
Taq polymerase during the PCR steps, we screened a cDNA
library for a complete clone. The two longest clones (2 kb) contained
the same complete coding sequence, and the same 3
-untranslated
sequence, as shown in Fig. 1. The open reading frame
containing the coding sequence is preceded by a 203-bp 5
-untranslated
region and followed by a 64-bp 3
-untranslated region, which contains a
polyadenylation site and terminates with a poly(A) tail. The cDNA
clones are incomplete in their 5
-untranslated region, as shown by the
size of mRNAs (see below; Fig. 4). The open reading frame starts
with two ATG codons, separated by 7 codons. Fig. 2 shows
an alignment of the coding region with that of T. marmorata.
The predicted primary sequence contains a signal peptide with two
potential cleavage consensus sites at positions 28-29 and 34-35, both
very close to the known NH2 termini of the mature
Torpedo, bovine, and human AChEs.
Fig. 1.
Nucleotide sequence of a cDNA clone
encoding B. fasciatus venom AChE and deduced primary
sequence of the protein. Two potential in-frame initiation ATG
codons are underlined, as well as a consensus polyadenylation site. The
elements of the catalytic triad are indicated by black dots,
the six cysteines are circled, and the four potential
N-glycosylation sites are boxed, as well as the
COOH-terminal peptide that diverges from either H or T sequences.
Fig. 4.
Northern blot of venom RNA. Total RNA
extracted from the venom gland was hybridized with a probe
corresponding to the catalytic domain of AChE (A) and a
probe corresponding to the diverging COOH-terminal SARA peptide
(S).
Fig. 2.
Alignment of B. fasciatus
and T. marmorata AChE sequences. The three amino
acids which constitute the catalytic triad are shown in shaded
boxes. The three internal disulfide bridges are indicated by
connected boxes. The aromatic residues that line the
catalytic gorge in Torpedo AChE are boxed. The
positions of residues 70 and 285, which differ in the peripheral sites
of Torpedo and Bungarus AChEs, are indicated by
black dots. The sequences of the alternative H and T
COOH-terminal regions of T. marmorata AChE are shown for
comparison.
) are all present. In addition, 13 of the 14 aromatic residues that
line the wall of the active gorge of Torpedo AChE (Sussman
et al., 1991
) are conserved in the Bungarus
enzyme. The only exception is tyrosine 70, which is replaced by a
methionine; Tyr-70 belongs to the peripheral anionic site, located at
the rim of the active site gorge, together with Asp-72, Tyr-121,
Tyr-130, Trp-279, and Tyr-334, which are all conserved.
. Fig. 3 shows that an
aspartic residue of Torpedo AChE, Asp-285, is replaced by a
lysine in Bungarus AChE. Thus, the peripheral site of
Bungarus AChE mostly differs from that of Torpedo
by the absence of an aromatic residue at position 70, and by the
replacement of Asp-285 by a positively charged residue.
Fig. 3.
Section of a three-dimensional model of
Bungarus AChE, through the catalytic gorge. The active
serine (Ser-200) is colored in yellow; the peripheral site
residues Trp-279, Tyr-121, and Asp-72 are colored from dark
to light blue. The peripheral site residues that differ in
Bungarus AChE, compared to Torpedo AChE, are
indicated in green (Met-70) and red
(Lys-285).
divergent region. Both probes hybridized with the same band, at 3.5 kb (Fig. 4). It thus appears that in the venom gland,
AChE transcripts are processed through a single splicing mode.
Fig. 6.
Sedimentation of secreted recombinant
Bungarus AChE. Samples of culture medium from cells
expressing the SARA construction were analyzed in sucrose gradients
containing no detergent (
), 0.2% Triton X-100 (
), or 1% Brij-96
(
). The fractions were assayed for AChE activity and for the
internal sedimentation standards, alkaline phosphatase (6.1 S) and
-galactosidase (16 S). AChE activity is plotted as a function of the
sedimentation coefficients, in the order of collection from the bottom
of the tube. Identical results were obtained in the case of the NAT and
RAD constructions.
Fig. 7.
Nondenaturing electrophoresis of recombinant
Bungarus AChE. The different lanes correspond to the
rat r-SAT construction and to the Bungarus SARA, RAD, and
NAT variants, and K285D mutant as indicated. A, cell
extract; B, culture medium. In cellular extracts, the SARA
enzyme shows a slow component, which is absent in the secreted enzyme.
In the culture medium, the migration of SARA is identical to that of
RAD. The RAD and NAT enzymes present similar patterns, except that the
migration of the NAT enzyme, which differs from RAD by the removal of a
negative charge, appears to be displaced by one interval of the ladder
pattern. The K285D mutant migrates faster than the NAT enzyme, from
which it differs by two negative charges. The arrows
indicate the loading points.
Fig. 8.
Nondenaturing electrophoresis of secreted
SARA enzyme, obtained at 27 °C and 37 °C; effect of
neuraminidase. The electrophoretic pattern of the enzyme produced
at 37 °C shows a higher proportion of the fastest migrating
components than that of the enzyme produced at 27 °C. After
neuraminidase treatment, the two enzymes show identical patterns, which
are reduced to the slowest components. The arrows indicate
the loading points.
Fig. 9.
Effect of an anti-flag antibody on the
sedimentation of intracellular SARA-flag recombinant AChE. An
intracellular extract of SARA-flag recombinant AChE was analyzed in
sucrose gradients without (
) or with the anti-flag antibody, M2
(
). In the presence of the M2 antibody, a fraction of the AChE
activity was shifted from 4.5 S to 7.8 S.
Fig. 10.
Activity of Bungarus AChE and
its mutants (M70Y and K285D) as a function of substrate
concentration. The rate of hydrolysis is plotted as a function of
substrate concentration, on a logarithmic scale. The bell-shaped
curves show that all enzymes are subject to excess substrate
inhibition. The curves are fitted to the Haldane equation, yielding
Km and Kss values. Table II
reports the means of several values so obtained. The wild type
(WT) and mutant enzymes possessed the NAT COOH-terminal
sequence (see ``Experimental Procedures'').
Enzyme
Km
Kss
µM
mM
WT
78.8 ± 6.3
35.8 ± 3.7
M70Y
108.6 ± 4.5
29.3 ± 1.9
K285D
58.7
± 4.1
30.6 ± 3.2
M70Y/K285D
95.3 ± 5.9
25.5
± 0.7
Torpedo
81.2 ± 4.2
22.0
± 1.5
We analyzed the inhibition of these enzymes, in parallel with
Torpedo AChE, by the active site ligand edrophonium, by the
bis-quaternary ligands decamethonium and BW284C51, which bind at both
active and peripheral sites (Berman et al., 1980
), and by
the peripheral site ligands propidium (Taylor and Lappi, 1975),
gallamine, D-tubocurarine (Changeux, 1966
), and fasciculin
2, a toxin from the venom of an Elapidae snake,
Dendroaspis angusticeps (Cerveñansky et
al., 1991
). From Lineweaver-Burk representations (Fig.
11), we determined apparent competitive and
noncompetitive inhibition constants, Ki and
Ki, as defined in Scheme I (Table
II).
), 1 mM (
), 3 mM (
), 5 mM (
),
10 mM (
), 30 mM (
), 100 mM
(
). The pattern of propidium inhibition appears to be of the mixed
type for the NAT wild type (WT) and K285D enzymes, and
essentially noncompetitive for the M70Y and M70Y/K285D enzymes.
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Edrophonium acts as a competitive inhibitor, with similar Ki values for the wild type and modified Bungarus AChEs, as well as for Torpedo AChE.
The bis-quaternary inhibitors, decamethonium and BW284C51, led to a
mixed type of inhibition. The Bungarus enzyme was somewhat
less sensitive to decamethonium than Torpedo AChE and
slightly more sensitive to BW284C51. Both the M70Y and K285D mutations
increased the sensitivity of Bungarus AChE to these
inhibitors, and the two mutations had a cumulative effect, affecting
both Ki and
Ki.
The wild type Bungarus AChE was more sensitive than Torpedo AChE to D-tubocurarine. The M70Y mutation decreased the sensitivity, mimicking the situation observed in Torpedo AChE. The K285D mutation increased it, and its effect was predominant in the double mutant, M70Y/K285D.
The Bungarus enzyme was markedly less sensitive than Torpedo AChE to the other peripheral site ligands, propidium, gallamine, and fasciculin. The individual mutations, M70Y and K285D, increased its sensitivity to these inhibitors, and the double mutant was more sensitive than Torpedo AChE to propidium and gallamine, and approximately equally sensitive to fasciculin. The two mutants, however, did not display the same efficiency for the different ligands; while K285D had a much greater effect than M70Y in the case of gallamine, the reverse was observed in the case of propidium, and their effects were equivalent in the case of fasciculin. Also, inhibition was of the competitive type for gallamine, of the mixed type for D-tubocurarine, and noncompetitive for fasciculin. In the case of propidium, the wild type and K285D enzymes were inhibited in a mixed manner, while inhibitions of M70Y and M70Y/K285D were essentially noncompetitive (Fig. 11). Comparing the inhibitions of the wild type, M70Y, K285D, and M70Y/K285D enzymes by propidium, the noncompetitive pattern appeared correlated with a high affinity of the ligand for the peripheral site.
Primary Structure of the AChE from Bungarus Venom
The venom glands of the Elapidae snake B. fasciatus abundantly secrete a soluble, monomeric form of AChE.
From this tissue, we obtained several cDNA clones that possess the
same coding sequence and the same short 3
-untranslated region. The
venom glands contain a single type of mRNA encoding AChE, with a
length of about 3.5 kb.
The coding sequence possesses two in-frame methionine codons, separated by seven codons. The deduced primary sequence shows that the catalytic domain is entirely homologous to those of AChEs from other species. Conserved residues, in the active site, include the catalytic triad, Trp-84, as well as Phe-288 and Phe-290, which form an acyl pocket, defining the specificity of the enzyme for acetyl esters (Harel et al., 1992). The six cysteines that form disulfide loops in all cholinesterases are also conserved. While Torpedo AChE possesses a free cysteine (Cys-231), Bungarus AChE, like the mammalian enzymes, does not contain any additional cysteine in the catalytic domain. The Bungarus sequence contains four potential N-glycosylation sites, at positions that are glycosylated in Torpedo or in mammalian AChEs.
The cDNA sequence obtained from Bungarus venom glands clearly diverges from either H or T sequences, downstream from the common catalytic exons. The absence of hydrophobic elements and the lack of a cysteine that could form intersubunit disulfide bonds are entirely consistent with the fact that the venom enzyme is a soluble monomer.3
Processing and Secretion of Monomeric Bungarus AChE
Expression in Transfected COS Cells; Level of Expression Is Higher than for an Equivalent Rat EnzymeThe level of AChE activity was comparable for COOH-terminal variants of Bungarus AChE, NAT, RAD, and SARA (Fig. 5). In all cases, the transfected COS cells secreted hydrophilic monomers sedimenting as a monodisperse peak at 4.5 S. Whereas Torpedo AChE is obtained in an active form only if the cells are grown at a low temperature, e.g. 27 °C, Bungarus AChE was markedly more efficiently produced at 37 °C than at 27 °C. Bungarus AChE therefore folds into its active conformation at both temperatures, and secretion was not dramatically impaired at 27 °C.
The production of Bungarus AChE was more than 30-fold higher than that of an equivalent monomeric soluble rat enzyme, r-SAT, although the snake protein would appear more foreign to the mammalian COS cells. The reason for this large difference in biosynthetic rate might reflect intrinsic thermodynamic properties of the polypeptidic chains, since Bungarus AChE renatures more readily into its active conformation than Torpedo AChE.6
An Unusual Charge Heterogeneity, Revealed by Nondenaturing Electrophoresis, May Reflect Variable SialylationLike the venom AChE,3 the different COOH-terminal variants of Bungarus AChE that we expressed in COS cells presented a remarkable heterogeneity in nondenaturing electrophoresis, producing a ladder pattern of 5-6 equally spaced bands. Neuraminidase treatment reduced the electrophoretic mobility and the number of bands, indicating that sialic acids play an important role in this microheterogeneity. Hayes and Wellner (1969) observed a similar pattern in the case of another abundant enzyme of snake venom, L-amino acid oxidase, presumably resulting from variation in the carbohydrate content of the protein.
We did not observe such a ladder pattern in the case of a monomeric, secreted form of rat AChE, obtained by transfecting COS cells with a truncated subunit, r-SAT, which is equivalent to NAT and contains three N-glycosylation sites, two of which are conserved in the Bungarus sequence. Similarly, the natural monomeric G1 form, composed of a single T subunit, which is abundant in some mammalian tissues such as embryonic brain, was never found to produce a ladder pattern in nondenaturing electrophoresis. Therefore, this property appears to singularize the Bungarus enzyme. It might be related to the high level of expression of this enzyme, if the rates of translation, folding, and transport of the Bungarus protein influence the efficiency of sialylation, both in COS cells and in the venom glands.
Proteolytic Processing of the SARA COOH-terminal SequenceAnalysis of the COOH terminus of the purified venom
enzyme shows that it does not contain the complete SARA sequence, but
undergoes a proteolytic cleavage removing about half of this peptide.
This cleavage occurs upstream of a series of four consecutive
arginines, and thus resembles numerous proteolytic cleavages that
participate in the maturation of peptidic hormones and other proteins
(Cohen, 1987
).
Cells expressing the SARA construction contained a fraction of uncleaved enzyme, while the culture medium only contained cleaved molecules, identical to those obtained with the RAD construction (Fig. 7). In addition, an anti-flag antibody recognized a fraction of the intracellular active AChE produced by the SARA-flag construction, but did not recognize the secreted enzyme. Thus, the full-length SARA enzyme is already active and it is cleaved before secretion, in COS cells and probably also in the venom gland. The significance of the cleavable arginine-rich extension is not clear, since the complete or truncated enzymes produced comparable levels of secreted AChE activity, in COS cells.
The Peripheral Site of Bungarus AChE
Differences with AChEs from Other SpeciesThe peripheral site of Bungarus AChE presents two major differences with those of Torpedo and mammalian AChEs: the replacement of tyrosine 70 by a methionine and of an acidic residue at position 285 by a lysine.
Tyrosine 70 is located at the entrance of the gorge and would
participate in the binding of peripheral site ligands, and in the relay
between the peripheral site and the orientation of Trp-84 in the active
site (Taylor and Radi
, 1994
; Barak et al., 1994
;
Ordentlich et al., 1995
). This residue is replaced by a
methionine in chicken and a serine in Caenorhabditis
elegans, but while the chicken enzyme is insensitive to propidium,
C. elegans AChE is very well inhibited, with a
Ki of 1.3 µM (Arpagaus et
al., 1994
). The lack of inhibition of the chicken enzyme by
propidium, as well as gallamine, D-tubocurarine (Eichler
et al., 1994
), and fasciculin (Barrett and Harvey, 1979
), is
probably related to the absence of another aromatic residue of the
peripheral site, Trp-279.
Because propidium, gallamine, and D-tubocurarine possess
quaternary ammonium groups, and basic residues of fasciculin play a key
role in its binding (Cerveñansky et al., 1994
; 1995),
acidic residues are obviously important elements of the peripheral
site. Indeed, mutations modifying the charge of Asp-72 and Glu-278,
located at the rim of the gorge, considerably decreased the affinity of
propidium and fasciculin (Shafferman et al., 1992
;
Radi
et al., 1993
; 1994; Barak et al.,
1994
). Thus, the presence of a lysine at position 285 of
Bungarus AChE, instead of an aspartic or glutamic acid in
Torpedo and mammalian AChE sequences, appeared significant.
Although the role of this residue in the peripheral site has not been
discussed previously, it is replaced by neutral residues in enzymes
that present low sensitivity to some peripheral site ligands: glutamine
in chicken AChE and glycine in human BChE.
We mutated residues Met-70 and Lys-285 of Bungarus AChE to Tyr and Asp, as found in Torpedo. Mutations M70Y and K285D had no effect on the catalytic turnover rate of the enzyme. In the case of M70Y, the observed increase in Km, suggests that the presence of an aromatic group at position 70, at the entrance of the narrow catalytic gorge, partially restricts the access of the substrate to the active site. On the contrary, Km was decreased for the K285D mutant. This appears consistent with the hypothesis that the peripheral site constitutes a primary zone of contact for positively charged substrates (Haas et al., 1992).
Bungarus AChE is inhibited by substrate concentrations above
1-2 mM. Mutations M70Y and K285D had little effect on this
phenomenon, although they had a considerable influence on peripheral
site ligands interactions, as discussed below. This observation argues
against the hypothesis that occupancy of the peripheral site is
responsible for excess substrate inhibition (Radi
et
al., 1991
); in fact Asp-72 seems to be the only residue of the
peripheral site implicated in this property of the enzyme (Radi
et al., 1993
).
Mutations of residues Met-70 and Lys-285
had no effect on the inhibition by a specific ligand of the active
site, edrophonium. In the case of bis-quaternary inhibitors, which
simultaneously bind to the active and peripheral sites (Berman et
al., 1980
; Harel et al., 1993
; Barak et al.,
1994
), each mutation decreased Ki less than 10-fold.
Mutations affecting Tyr-70 have already been shown to decrease
inhibition by bis-quaternary inhibitors (Radi
et al.,
1993
; Barak et al., 1994
). Both the crystal structure of the
AChE-decamethonium complex (Harel et al., 1993
) and the
model of the AChE-BW284C51 complex (Barak et al., 1994
)
suggest a direct interaction of Tyr-70 with these ligands. Our results
confirm the importance of Tyr-70 and suggest that the charge of residue
285 also affects this interaction.
The mutations of both Met-70 and Lys-285 had a pronounced
effect on inhibition by peripheral site ligands. Thus, the residue
located at position 285 has considerable influence on the binding of
peripheral site ligands, although it is rather distant (11 Å between
carbon
atoms) from Trp-279, which is considered as the core of the
peripheral site.
The wild type Bungarus AChE was found to be less sensitive to propidium, gallamine, and fasciculin than Torpedo AChE, but slightly more sensitive to D-tubocurarine. For D-tubocurarine, the M70Y mutation increased Ki, while K285D decreased it. The presence of a tyrosine at position 70 may cause a steric hindrance for the binding of this polycyclic, rigid ligand.
For propidium, gallamine, and fasciculin, each single mutation
increased the sensitivity of Bungarus AChE and these effects
were cumulated in the double mutant, which was at least as sensitive as
Torpedo AChE. However, the two mutations had distinct
effects; M70Y had a larger effect for propidium, K285D for gallamine,
and they were equivalent for fasciculin. Previous studies analyzed
mutations of Tyr-70 on the binding of propidium (Radi
et
al., 1993
; Barak et al., 1994
) and fasciculin
(Radi
et al., 1994
); Tyr-70 probably interacts
directly with these ligands, as indicated by modelization of the
AChE-propidium complex (Barak et al., 1994
) and the crystal
structure of the AChE-fasciculin 2 complex (Bourne et al.,
1995
; Harel et al., 1995
). In addition, we show that an
acidic residue at position 285 also plays an important role in the
binding of peripheral site inhibitors. The effect of the K285D mutation
on fasciculin 2 inhibition is in excellent agreement with the structure
of complexes between mouse or Torpedo AChE and fasciculin,
showing that the position 285 acidic residue interacts with His-29 of
the toxin (Bourne et al., 1995
; Harel et al.,
1995
). Our results suggest that Asp-285 of AChE and His-29 of
fasciculin also interact in the complex formed in solution. We found
that modification of the charged residue at position 285 has a similar
impact as the change of methionine to tyrosine at position 70 which was
shown to be directly involved in the binding. This suggests that the
stability of the complex also depends on electrostatic
interactions.
Thus, both the aromatic and the charged residues at positions 70 and 285 participate, to various extents, in the interactions of ligands with the peripheral site. The differences observed in the effects of the M70Y and K285D mutations on the peripheral site inhibitors illustrate the fact that each ligand interacts with a distinct subset of residues. In fact, it is likely that an inhibitor might occupy distinct positions on the peripheral sites of wild type and mutant enzymes. This also applies to enzymes from different species.
In conclusion, the monomeric soluble form of AChE from
Bungarus venom is a useful molecule for detailed analyses of
the catalytic mechanism, including the role of the peripheral site. The
monomeric structure should prove helpful studying the influence of the
electric dipole moment of the protein on the traffic of substrates and
products in the catalytic gorge, without any interference between
subunits (Pörschke et al., 1996
). The COOH-terminal
sequence of this enzyme is quite unusual, since it differs from both H
and T peptides and undergoes a distinctive proteolytic cleavage. This
enzyme presents a unique ladder-like pattern in nondenaturing
electrophoresis, probably related to its glycosylation. It is produced,
in transfected COS cells, at a much higher level than an equivalent
mammalian enzyme, the rat r-SAT secreted monomeric form. Whether this
efficiency of the mammalian cells in producing a foreign protein
resides in an intrinsic property of the protein itself is unknown, but
this feature should prove useful in obtaining large amounts of
recombinant AChE.
The nucleotide sequence(s) reported in this paper has been submitted to the GenBankTM/EMBL Data Bank with accession number(s) U54591[GenBank].
To whom correspondence should be addressed: Unité des
Venins, Institut Pasteur, 28 rue du Dr Roux, 75015 Paris, France. Tel.:
33-1-45-68-86-85; Fax: 33-1-40-61-30-57.
We thank Prof. Yuliang Xiong and Dr. Yun Zhang for the gift of the Bungarus biological samples and Dr. Pierre Bougis for the gift of fasciculin 2. We are indebted to Dr. Yun Zhang for fruitful discussions, Dr. Pascale Marchot for critical reading of the manuscript, Dr. Jacques d'Alayer for COOH-terminal sequencing, and Anne le Goff and Rizwana Nawaz for expert technical assistance.