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Volume 271, Number 30, Issue of July 26, 1996 pp. 18203-18210
©1996 by The American Society for Biochemistry and Molecular Biology, Inc.

CCAAT Displacement Protein Competes with Multiple Transcriptional Activators for Binding to Four Sites in the Proximal gp91phox Promoter*

(Received for publication, February 1, 1996, and in revised form, May 13, 1996)

Wen Luo and David G. Skalnik Dagger

From the Herman B Wells Center for Pediatric Research, Section of Pediatric Hematology/Oncology and the Departments of Pediatrics and Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, Indiana 46202-5225

ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
FOOTNOTES
Acknowledgments
REFERENCES


ABSTRACT

CCAAT displacement protein (CDP) competes with transcriptional activating proteins for binding to each of four elements within the myeloid-specific gp91phox promoter. CDP exhibits the strongest affinity for a site centered at -110 base pairs (bp) of the promoter and progressively weaker affinities for three more distal binding sites. CDP binding to each site is down-regulated during terminal phagocytic differentiation, coincident with induction of gp91phox expression. Deletion of the high affinity CDP-binding site at -110 bp leads to inappropriate gp91phox promoter activity in HeLa, K562, and HEL cells. An overlapping binding site for the CCAAT box-binding factor CP1 is required for derepressed promoter activity in HeLa and K562 cells, but is dispensable in HEL cells, indicating that different cell types require distinct cis-elements for gp91phox promoter activity. Derepressed gp91phox promoter activity is further increased upon removal of a second CDP-binding site centered at -150 bp, revealing that CDP represses gp91phox expression via multiple cis-elements. We present a model in which restriction of gp91phox expression to mature myeloid cells involves competition between transcriptional activators and repressors for binding to multiple sites within the promoter.


INTRODUCTION

The gp91phox gene encodes a component of the NADPH oxidase complex that is responsible for the generation of a respiratory burst in mature phagocytic blood cells (1). Absence of oxidase activity results in chronic granulomatous disease, an inherited disorder of phagocyte function, and may be due to disruption in the expression of any of several oxidase components, including gp91phox (1), p47phox (2), p67phox (3), or p22phox (4). The gp91phox gene is expressed nearly exclusively in terminally differentiating myelomonocytic cells (1), thereby providing a model system for studying the regulation of tissue- and stage-specific gene expression within the myelomonocytic lineage.

The proximal gp91phox promoter (-450 to +12 bp)1 is sufficient, and cis-acting elements between -138 and -450 bp are required, to direct appropriate expression of linked reporter genes in a subset of monocytes/macrophages when introduced into transgenic mice (5). The proximal gp91phox promoter also appropriately directs reporter gene expression in stably transfected myeloid cells following stimulation by interferon-gamma (IFN-gamma ) (6).

The binding of transcriptional activating factors to several sites in the gp91phox promoter is required for normal promoter function. Mutations that ablate a binding site for a factor denoted HAF-1 (<UNL>h</UNL>ematopoietic <UNL>a</UNL>ssociated <UNL>f</UNL>actor) have been identified in the gp91phox promoter of chronic granulomatous disease patients who exhibit abnormal gp91phox transcription (7). Ablation of the HAF-1-binding site also prevents IFN-gamma induction of gp91phox promoter activity in transfected myeloid cell lines (6). Additional transcriptional activating factors, denoted BIDs (<UNL>b</UNL>inding <UNL>i</UNL>ncreased during <UNL>d</UNL>ifferentiation), bind to three sites in the gp91phox promoter and are also required for an IFN-gamma response.2 The middle BID-binding site conforms to an IFN-stimulated response element and additionally serves as a binding site for IFN regulatory factor (IRF)-1 and -2.2

The gp91phox promoter is additionally under the control of transcriptional repression. Previously, we demonstrated that deletion of the region between -133 and -100 bp leads to inappropriate gp91phox promoter activity in transiently transfected cells that do not normally express the gp91phox gene (8). A ubiquitous CCAAT box-binding factor interacts with this promoter region when nuclear extracts derived from mature myeloid cells are analyzed. When using nuclear extracts isolated from nonexpressing cells, however, binding of the CCAAT box-binding factor is blocked by binding of the transcriptional repressor CCAAT displacement protein (CDP). The DNA binding activity of CDP is down-regulated during terminal differentiation of phagocytic cells (8). In addition, overexpression of cloned CDP in myeloid cell lines prevents induction of the gp91phox gene upon terminal phagocytic differentiation (9). Therefore, the stage-specific regulation of CDP is one important step in restricting gp91phox expression to mature phagocytic cells.

Molecular cloning of CDP revealed it to be a 180-kDa protein related to the Drosophila homeobox protein Cut (10, 11, 12, 13, 14). Cut is involved in determining cell fates in several Drosophila tissues including sensory organs and malpighian tubules (15, 16, 17, 18, 19, 20). Cut expression is also detected in muscle, central nervous system, and ovarian follicle cells (21). However, the target genes and mechanism of action for Cut in Drosophila have not been reported.

We postulated that additional repressor elements reside upstream of the previously described CDP-binding site in the gp91phox promoter (8). This report describes the identification and functional characterization of three additional CDP-binding sites within the gp91phox promoter and illustrates the importance of transcriptional repression in the complex regulation of gp91phox expression.


EXPERIMENTAL PROCEDURES

Construction of Plasmids

Plasmids containing the regions from -450 to +12 bp, -324 to +12 bp, -212 to +12 bp, and -100 to +12 bp of the human gp91phox promoter and mutated promoters lacking ~30 bp surrounding the previously reported CDP-binding site (CDP-alpha ) have been described (8). Human growth hormone reporter gene constructs were previously used to investigate gp91phox promoter function (8). The parental growth hormone reporter plasmid exhibits a significant background activity, presumably due to cryptic promoter activity in the vector backbone (6, 8). Consequently, promoter fragments described above were liberated from growth hormone reporter constructs by digestion with SalI and BamHI and cloned into SalI/BglII-digested pXP2 (22), a luciferase reporter gene vector (the generous gift of Yu Chung Yang). The luciferase reporter gene utilized in this report has the advantage of being extremely sensitive and also exhibiting a low level of background expression.

Specific ablation of the CDP-alpha element (8) was performed by polymerase chain reaction mutagenesis (23) using complementary oligonucleotides that contain 30 bp of wild-type sequence at their 5'-end and 40 bp of mutated sequence, including a CCAAT box derived from the alpha -globin promoter and 10 bp of unrelated sequence, and an XhoI site at their 3'-end. The resultant gp91phox promoter lacks the CDP-alpha site, but retains a CCAAT box in an unaltered position relative to the transcription initiation site. The entire nucleotide sequence of each mutagenized promoter fragment was determined using the Sequenase system (U. S. Biochemical Corp.). The -138 to +12 bp gp91phox promoter/luciferase constructs were generated by digesting the corresponding -450 to +12 bp constructs with HindIII, followed by intramolecular ligation.

Cell Culture and Transfections

The human cervical carcinoma cell line HeLa (24), the human erythroleukemia cell line HEL (25), the human chronic myelogenous leukemia cell line K562 (26), and the murine fibroblast cell line 3T3 (27) were obtained from the American Type Culture Collection (Rockville, MD). The human myelomonoblastic cell line PLB985 (28) was the generous gift of Thomas Rado. Cells were grown in RPMI 1640 medium supplemented with 10% fetal calf serum, 0.2 mM glutamate, 50 units/ml penicillin, and 50 µg/ml streptomycin. HeLa and 3T3 cells were grown in similarly supplemented Dulbecco's modified Eagle's medium. Differentiation of PLB985 cells along the monocyte/macrophage lineage was induced by treatment with 0.1 mM phorbol 12-myristate 13-acetate for 48 h.

Hematopoietic cell lines (K562 and HEL) were transfected by electroporation. For each transfection, 107 cells were resuspended in 0.3 ml of serum-free medium and mixed with 5 µg of gp91phox promoter/luciferase plasmid and 0.5 µg of cytomegalovirus promoter-enhancer/beta -galactosidase plasmid at room temperature. The mixture was electroporated at 220 V and 960 microfarads, and the transfected cells were grown in 10 ml of complete medium at 37 °C under 5% CO2. HeLa cells were transfected using the calcium phosphate coprecipitation method described by Chen and Okayama (29). After 10 h of incubation, cells were harvested and washed twice with 1 × phosphate-buffered saline, and cell pellets were collected and resuspended in 100 µl of 1 × lysis buffer (Promega). After incubation at room temperature for 10-15 min, cell extracts were collected, and 20 µl were used to assay luciferase activity using a Promega luciferase kit and a Lumat 9210 luminometer. 30 µl of the extracts were used to assay beta -galactosidase activities as described (30). These values were used to standardize luciferase levels to compensate for variability in transfection efficiency between samples.

Oligonucleotides

Complementary oligonucleotides corresponding to the following regions of the gp91phox promoter (8) were synthesized on an Applied Biosystems Model 394 synthesizer: CDP-alpha (-137 to -76 bp), 5'-gctttttcagttgaccaatgattattagccaatttcgataaaagaaaaggaaaccgattgc-3'; mutated CDP-alpha , 5'-gcttccgcgccagccaatgagcgccgccactcgaggtcgccggtcgcgtaaaaccgattgcg-3'; CDP-beta (-182 to -112 bp), 5'-tttgtagttgttgaggtttaaagatttaagtttgttatggatgcaagcttttcagttgaccaatgattat-3'; Delta -CDP-beta (-182 to -124 bp), 5'-tttgtagttgttgaggtttaaagatttaagtttgttatggatgcaagcttttcagtt-3'; 5'-CDP-beta (-182 to -137 bp), 5'-tttgtagttgttgaggtttaaagatttaagtttgttatggatgca-3'; 3'-CDP-beta (-138 to -112 bp), 5'-agcttttcagttgaccaatgattat-3'; CDP-gamma (-241 to -192 bp), 5'-agaaattggtttcattttccactatgtttaattgtgactggatcattat-3'; CDP-gamma ' (-261 to -211 bp), 5'-gttatttatctcttagttgtagaaattggtttcattttccactatgttta-3'; CDP-delta (-382 to -331 bp), 5'-tctagttgagtggctaaaaattgtgatcaaatagctggttagttaaaaa-3'; and Mbo (-39 to -1 bp), 5'-gaagcatagtatagaagaaaggcaaacacaacacattca-3'. Additional oligonucleotides used in this study were as follows: E36 (31), 5'-cggatccgaattcatcgataatcgattat-3'; alpha -globin (32), 5'-ggcggcgctcattggctggcgcggagcccg-3'; and IRF-1 (33), 5'-acggatccggcatattcaaaaccgaaaccaagtccctcgagac-3'.

In Vitro DNA-binding Protein Assays

Nuclear extracts were prepared as described (34). Double-stranded oligonucleotides were subcloned into the pUC19 plasmid, released by restriction enzyme digestion, and labeled by T4 polynucleotide kinase using [gamma -32P]ATP or with Klenow enzyme using [alpha -32P]dCTP. Radiolabeled probes were resolved by polyacrylamide gel electrophoresis and eluted by the crush and soak method (30). Electrophoretic mobility shift assays (EMSAs) were performed as described previously (8) with slight modification. Briefly, 3-6 µg of nuclear extract were mixed with 0.5 µg of poly[d(I·C)] and competitor double-stranded oligonucleotides, where indicated, in a 20-µl reaction volume. The mixture was incubated on ice for 15 min prior to the addition of 15,000 cpm of probe. After another 15-min incubation on ice, samples were loaded onto a 0.5 × Tris borate/EDTA, 3.5% nondenaturing polyacrylamide gel (except where otherwise indicated), and electrophoresis was carried out at 4 °C and 25 mA for 90 min. Antiserum raised against CDP (11), NF-Y (35), or preimmune serum was added to the binding reactions 10 min prior to the probe where indicated. NF-Y antiserum was the generous gift of Diane Mathis.


RESULTS

Identification of Three Additional CDP-binding Sites within the Proximal gp91phox Promoter

Previously, we demonstrated that CDP binding to the gp91phox promoter (-132 to -86 bp) is necessary to repress promoter function in the erythroid cell line HEL and in the undifferentiated myeloid cell line PLB985 (8). We hypothesized that additional repressor sites were located upstream of -138 bp because a progressively greater degree of derepression was observed when constructs lacking the CDP-binding site were analyzed in the context of -1542 bp, -212 bp, or -138 bp of gp91phox promoter (8). Experiments were conducted to further characterize the gp91phox promoter region between -450 and -138 bp.

EMSA performed with nuclear extracts isolated from HeLa cells identifies three upstream gp91phox promoter fragments (CDP-beta , -182 to -112 bp; CDP-gamma , -241 to -192 bp; and CDP-delta , -382 to -313 bp) (Fig. 1A), each of which forms a complex that exhibits a mobility identical to that previously described for the CDP complex formed with the CDP-alpha probe (-137 to -76 bp) (Fig. 1B, - lanes). Similar complexes are also observed using nuclear extracts isolated from K562 and HEL cells (data not shown). Each of the four complexes is specifically disrupted by antiserum raised against CDP (Fig. 1B, CDP-ab lanes), but not by preimmune serum (preimmune lanes). Furthermore, each of these complexes is absent when EMSA is performed with nuclear extracts isolated from terminally differentiated PLB985 myeloid cells that lack CDP DNA binding activity (8) and express the endogenous gp91phox gene (Fig. 1C, Macrophage lanes). We conclude that four CDP-binding sites reside within the -382 to -76 bp region of the gp91phox promoter.


Fig. 1. CDP binds to four elements in the proximal gp91phox promoter. A, shown is an illustration of the relative positions of oligonucleotide probes (CDP-alpha , -beta , -gamma , and -delta ) derived from the gp91phox promoter and utilized in EMSA. B, CDP binds to each of four elements derived from the gp91phox promoter. EMSA was performed as described under ``Experimental Procedures.'' Probes were incubated with 3 µg of nuclear extract isolated from HeLa cells following preincubation with CDP antibody (CDP-ab) or preimmune serum as indicated. The CDP-gamma probe used in this experiment corresponds to a dimer of the -241 to -192 bp gp91phox promoter, which explains the slightly higher position of the free probe and CDP complex. The position of the CDP complexes is indicated with an arrow. C, CDP binding to four gp91phox promoter elements is down-regulated during myeloid differentiation. Probes were incubated with 3 µg of nuclear extract isolated from PLB985 cells induced by phorbol 12-myristate 13-acetate treatment to differentiate along the macrophage lineage or nuclear extract isolated from HeLa cells. The position of the CDP complexes is indicated with an arrow.
[View Larger Version of this Image (75K GIF file)]

EMSA competition assays were performed to examine the sequence specificity and relative binding affinity of CDP for each of the four binding sites within the gp91phox promoter (Fig. 2). Each CDP complex is disrupted by the addition to the binding reaction of a molar excess of homologous double-stranded oligonucleotide competitor, but not by the addition of a heterologous oligonucleotide competitor (a CCAAT box element derived from the alpha -globin promoter). Cross-competition studies using the four CDP-binding sites as competitors reveal that CDP exhibits a range of affinities for the four binding sites within the gp91phox promoter. For example, the CDP-alpha site efficiently disrupts each of the four CDP complexes, while the CDP-delta site efficiently disrupts only the CDP-delta complex and partially disrupts the CDP-alpha complex at high competitor concentration. Overall, the affinity of CDP for each site correlates with the distance from the site of transcription initiation. CDP exhibits the greatest affinity for the CDP-alpha site and the weakest affinity for the CDP-delta site (Fig. 2).


Fig. 2. Binding specificity and affinity of CDP for four binding sites within the gp91phox promoter. EMSA was performed as described under ``Experimental Procedures'' using CDP-binding site probes, nuclear extract isolated from HeLa cells, and the indicated amount of nonradioactive oligonucleotides. 2 ng of competitor oligonucleotide correspond to an ~50-fold molar excess over the probe. The alpha -globin CCAAT box competition for the CDP-alpha probe is not shown since it has been previously reported to not affect the CDP complex (8). ND, not determined.
[View Larger Version of this Image (61K GIF file)]

The CDP-alpha and CDP-beta oligonucleotides overlap by 25 bp. This region includes a portion of the DNase I footprint (-132 to -86 bp) produced by CDP binding to the CDP-alpha element (8). Additional studies were performed with oligonucleotides corresponding to truncated portions of CDP-beta (Fig. 3A) to determine if CDP binding to the CDP-beta oligonucleotide is due to the overlapping CDP-alpha sequence. An oligonucleotide competitor lacking the 3'-half of the overlapping region (Delta -CDP-beta ) exhibits a significantly reduced ability to disrupt the CDP complex formed with the full-length CDP-beta -binding site probe (Fig. 3B, first triplet of lanes). However, a probe lacking the entire overlapping region (5'-CDP-beta ) and the Delta -CDP-beta probe both produce CDP complexes in EMSA, although of weaker intensity compared with the full-length CDP-beta -binding site probe (Fig. 3B, middle two triplets of lanes). Each of these CDP complexes is disrupted by competition with the full-length CDP-beta oligonucleotide. However, a probe restricted to the overlapping region (3'-CDP-beta ) fails to form a CDP complex when used as a probe (Fig. 3B, last triplet of lanes). We conclude that the CDP-beta element contains an independent CDP-binding site, but sequence that overlaps with CDP-alpha appears necessary for full binding affinity of CDP for the CDP-beta site.


Fig. 3.

Localization of the CDP-binding site within the CDP-beta oligonucleotide. A, shown is an illustration of oligonucleotides corresponding to regions of the gp91phox promoter that were used in EMSA: CDP-alpha , -137 to -76 bp; CDP-beta , -182 to -112 bp; Delta -CDP-beta , truncated CDP-beta lacking one-half of the overlapping region between the CDP-alpha and CDP-beta oligonucleotides (-182 to -124 bp); 5'-CDP-beta , truncated CDP-beta lacking the overlapping region between the CDP-alpha and CDP-beta oligonucleotides (-182 to -137 bp); and 3'-CDP-beta , containing the region common to the CDP-alpha and CDP-beta oligonucleotides (-138 to -112 bp). B, sequence upstream of CDP-alpha is required for binding of CDP to the CDP-beta element. EMSA was performed as described under ``Experimental Procedures'' using 3 µg of nuclear extract isolated from HeLa cells. A competitor oligonucleotide containing the CP1-binding site of the alpha -globin promoter was used to identify the CP1 complex. The positions of the CDP and CP1 complexes are indicated by arrows. C, the CCAAT box-binding factor that binds to the CDP-alpha probe is recognized by NF-Y (CP1) antiserum. EMSA was performed with the CDP-alpha probe and nuclear extract isolated from 3T3 cells. 20 ng of alpha -globin competitor were added where indicated. NS, normal serum. The positions of the NF-Y (CP1) and supershifted (SS) complexes are indicated by arrows. Ab, antibody.


[View Larger Version of this Image (28K GIF file)]

The 3'-CDP-beta probe forms a complex with a CCAAT box-binding factor that is disrupted by competition with an oligonucleotide containing the alpha -globin promoter CCAAT box (Fig. 3B, last triplet of lanes). This is consistent with previous findings that a CCAAT box within the CDP-alpha probe (-123 to -119 bp) is a binding site for a protein that exhibits a binding specificity similar to that of CP1 (8). Since the time of that report, antibodies directed against NF-Y, the murine homologue of CP1, have been described (35). An additional EMSA was performed with nuclear extracts isolated from murine 3T3 cells to determine if NF-Y antiserum affects the CCAAT box-binding factor complex produced with the CDP-alpha probe. The CDP-alpha probe generates a complex that is disrupted by the addition of a competitor derived from the alpha -globin CCAAT box region (Fig. 3C), consistent with the HeLa results presented in Fig. 3B. The addition of anti-NF-Y antiserum to the binding reaction alters the CCAAT box-binding complex and generates a supershifted band (Fig. 3C). This confirms that NF-Y, the murine homologue of CP1, binds to the CCAAT box at -123 to -119 bp of the gp91phox promoter. No effect is observed following the addition of normal serum to the reaction.

CDP Competes with Transcriptional Activating Factors for Binding to the gp91phox Promoter

CDP has been postulated to repress transcription by competing with transcriptional activating factors for overlapping promoter-binding sites (8, 36, 37). As illustrated in Fig. 4, we have previously demonstrated the presence of several binding sites for transcriptional activating proteins (CP1 and BID factors) that overlap the CDP-binding sites described in this report (8).2 This suggests a model in which interaction of the activators with the gp91phox promoter is prevented by the binding of CDP in non-phagocytic cells. EMSA experiments were carried out under conditions of limiting probe to directly assess whether the binding of CDP is mutually exclusive with the binding of these activating factors.


Fig. 4. Model for the regulation of the gp91phox promoter. The transcriptional repressor CDP competes with the binding of transcriptional activating factors at four elements. The DNA binding activity of CDP is down-regulated during terminal phagocyte development, thereby permitting the interaction of transcriptional activators with the gp91phox promoter. +1 indicates the site of transcription initiation. Lines above alpha , beta , gamma , and delta  indicate the positions of each of the four oligonucleotides used in this report as CDP-binding sites. Heavy bars above transcriptional activating factors denote corresponding DNase I footprints (8).2
[View Larger Version of this Image (14K GIF file)]

When nuclear extracts isolated from HeLa cells are used in EMSA, the CDP complex predominates for the CDP-alpha , -beta , -gamma ', and -delta gp91phox promoter probes (the CDP-gamma ' oligonucleotide is shifted 20 bp upstream relative to the CDP-gamma site)2 (Fig. 5A). However, the CP1 and BID complexes become more intense following disruption of the CDP complex by the addition of a high affinity CDP-binding site competitor oligonucleotide (E36) to the reaction (Fig. 5A, center lane for each probe), suggesting that CDP binds preferentially to each probe to the exclusion of BID and CP1. Similar results were obtained following preincubation of nuclear extract with anti-CDP antiserum (data not shown). An IRF-binding site is also found within the CDP-gamma ' site, although BID and IRF-2 comigrate on a 3.5% gel. A similar experiment analyzed on a 6% gel revealed that both BID and IRF-2 binding are similarly increased following disruption of the CDP complex by the addition of the E36-binding site competitor (data not shown).


Fig. 5. Mutually exclusive binding of CDP and transcriptional activating factors to elements of the gp91phox gene promoter. A, disruption of CDP binding results in increased intensity of BID and CP1 complexes. EMSA was performed as described under ``Experimental Procedures,'' except that 3500 cpm of each probe were incubated with 6 µg of nuclear extract isolated from HeLa cells. The CDP, CP1, IRF-2, and BID complexes are indicated by arrows. The E36 oligonucleotide is a high affinity CDP-binding site (31), and the Mbo oligonucleotide corresponds to the -39 to -1 bp region of the gp91phox promoter and serves as a nonspecific competitor. B, CDP fails to form a ternary complex with the DNA probe and transcriptional activators. EMSA was performed as described for A. The alpha -globin CCAAT box oligonucleotide in increasing amounts was used as a specific competitor for CP1 binding (32), and an IRF-binding site oligonucleotide was used as a competitor for BID and IRF-2 binding (33).
[View Larger Version of this Image (46K GIF file)]

Ternary complexes containing probe and both CDP and a transcriptional activating factor should not form if CDP binds DNA in a mutually exclusive manner. Complexes trapped in the gel wells appear to contain CDP as they are disrupted by the addition of the E36 CDP-binding site oligonucleotide (Fig. 5, A and B). However, they are not affected by competition with oligonucleotides known to disrupt BID, IRF-2 (IRF-1 oligonucleotide), or CP1 (alpha -globin oligonucleotide) complexes or by an unrelated oligonucleotide (Mbo) (Fig. 5B). Hence, no ternary complex is detected that contains probe and both CDP and CP1, IRF, or BID.

Functional Analysis of CDP-binding Sites

A series of luciferase reporter gene constructs were generated that contain variable lengths of the gp91phox promoter, and hence different numbers of CDP-binding sites, to assess the contribution of the four CDP-binding sites to the transcriptional regulation of the gp91phox promoter. All constructs also include the gp91phox 5'-untranslated region (up to +12 bp). The promoter activity of each of these constructs was determined following transient transfection into tissue culture cells.

The -450 to +12 bp gp91phox promoter/luciferase construct (wt450) produces a low level of reporter gene expression following transfection into cell lines that do not express the endogenous gp91phox gene, such as HEL, K562, and HeLa cells (Fig. 6). 5'-Promoter truncations that remove one or two of the upstream CDP-binding sites (wt324 and wt212) have little effect on promoter activity. However, a truncation that removes the three upstream CDP-binding sites (wt138) results in a statistically significant increase in reporter gene expression as compared with the wt450 construct in both K562 and HEL cells (2.6-fold increase, p < 0.01; and 1.8-fold increase, p < 0.05, respectively). Deletion of four CDP-binding sites, leaving only the -100 to +12 bp region of the proximal gp91phox promoter, results in a further increase of promoter activity in K562 and HEL cells (5.4- and 19.5-fold increases, respectively; p < 0.01). None of the truncated gp91phox promoter fragments direct a significantly increased level of reporter gene expression in HeLa cells, however. These results suggest that CDP binding is required for repression of gp91phox gene expression in at least some non-phagocytic cells and confirm the functional significance of both the CDP-alpha - and CDP-beta -binding sites in repressing gp91phox promoter activity in these cells.


Fig. 6. Functional analysis of CDP-binding sites on gp91phox promoter activity. Transient transfections of gp91phox promoter/luciferase constructs into HeLa cells, K562 cells, and HEL cells were performed as described under ``Experimental Procedures.'' The data are presented relative to the pXP2 luciferase vector, which is set at 1. The corresponding gp91phox promoter region of each construct is shown to the left. The number within each construct name indicates the length of gp91phox promoter upstream of the transcription initiation site. CDP-binding sites are represented by hatched rectangles; the CCAAT box of the gp91phox gene (within the CDP-alpha site) is shown as a filled circle; the CCAAT box derived from the alpha -globin gene promoter is represented by an open circle; and the CDP-alpha site deletion is shown as a Delta . Each data number represents the result of multiple transfections using multiple plasmid preparations.
[View Larger Version of this Image (27K GIF file)]

Additional experiments were performed to analyze in more detail the functional significance of the CDP-alpha -binding site. Specific deletion of the proximal CDP/CP1-binding site in the context of the -450 to +12 bp gp91phox promoter (del450) leads to derepression of luciferase expression in HEL cells (3.9-fold increase; p < 0.01), confirming the importance of the CDP-alpha -binding site in the repression of the gp91phox promoter (Fig. 6). Similar results using a human growth hormone reporter gene were previously reported in both PLB985 and HEL cells for this deletion construct (8). Derepressed expression in HEL cells is also observed with this deletion in the context of -324 to +12 bp (del324) or -212 to +12 bp (del212) of gp91phox promoter (3.9- and 4.0-fold increases, respectively, relative to the corresponding wild-type constructs; p < 0.01) (Fig. 6).

However, these internal deletion constructs fail to exhibit a similar derepression in HeLa and K562 cells. Because the promoter deletion is not specific for the CDP-binding site, but rather also removes an overlapping binding site for CP1, we reasoned that in HeLa and K562 cells, the binding of CP1 may be necessary for gp91phox promoter activity in the absence of CDP binding. To test this hypothesis, a construct was created that lacks the CDP-alpha CDP-binding site, but retains a CP1-binding site (see ``Experimental Procedures''). EMSA was performed with wild-type and mutated CDP-alpha site probes to determine the specificity of this mutation. An oligonucleotide competitor containing the CDP-specific mutation disrupts the CP1 complex, but not the CDP complex that forms with the wild-type probe (Fig. 7). When used as a probe, the oligonucleotide containing the CDP-specific mutation fails to generate a CDP complex, but forms a complex containing CP1 that is disrupted by a competitor oligonucleotide containing the CP1-binding site of the alpha -globin promoter.


Fig. 7. Mutation of the CDP-alpha site specifically abolishes CDP binding. EMSA was performed as described under ``Experimental Procedures'' using nuclear extract isolated from HeLa cells and 40 ng of oligonucleotide competitors representing the wild-type (wt) CDP-alpha site, the mutated (mut) CDP-alpha site, or the CCAAT box from the alpha -globin promoter as indicated. Probes correspond to wild-type or mutated CDP-alpha sites (see ``Experimental Procedures'' for sequences). The positions of CDP and CP1 complexes are indicated by arrows.
[View Larger Version of this Image (58K GIF file)]

A luciferase reporter gene construct containing the CDP mutation within the CDP-alpha element (mut450) produces significant derepressed expression following transfection into HeLa cells (4.8-fold increase; p < 0.01), K562 cells (7.7-fold increase; p < 0.01), and HEL cells (3.9-fold increase; p < 0.01) (Fig. 6). Similarly derepressed promoter activity is observed when the CDP-specific mutation is analyzed in the context of -324 to +12 bp (mut324) or -212 to +12 bp (mut212) of proximal gp91phox promoter. However, a significantly greater level of gp91phox promoter activity is observed when the CDP-specific mutation is analyzed in the absence of the CDP-beta element (mut138) (HeLa cells, 7.1-fold increase; K562 cells, 16.4-fold increase; and HEL cells, 6.7-fold increase; p < 0.01). This confirms the importance of the CDP-alpha -binding site in gp91phox regulation as well as the requirement of CP1 binding for full promoter activity in HeLa and K562 cells. In addition, the difference in all three cell lines between the mut212 and mut138 promoter activities provides additional functional evidence that the CDP-beta -binding site also represses gp91phox expression.


DISCUSSION

CDP Is a Repressor of gp91phox Transcription

Transcriptional repressors play a crucial role in controlling gene expression during developmental processes (38, 39, 40, 41, 42). For example, neuron-specific silencer factor represses a wide range of neuron-specific genes and is down-regulated during neural differentiation (43). Hence, regulation of a repressor can act as a master regulatory switch, just as induction of transcriptional activators such as GATA-1 or MyoD has been postulated to serve as a global activator of specific developmental programs (44, 45).

This report examines four binding sites for the transcriptional repressor CDP within the proximal promoter region (-382 to -76 bp) of the myelomonocyte-specific gp91phox gene. Two of these CDP-binding sites repress gp91phox transcription in cells that do not express the endogenous gp91phox gene. Repression activity in transient transfection assays is not evident for the two distal CDP-binding sites. This may be because they appear to be the two weakest binding sites, and their effects may therefore be too subtle to detect in transient transfection assays. In addition, derepressed promoter activity following removal of upstream CDP-binding sites may require the retention of overlapping binding sites for transcriptional activators (Fig. 4), similar to the requirement for CP1 binding to the CDP-alpha site for expression in HeLa and K562 cells (Fig. 6). Efforts to specifically ablate the upstream CDP-binding sites have thus far been unsuccessful, but may be possible when the binding properties of the transcriptional activating protein(s) are fully characterized.

Significance of Multiple CDP-binding Sites in the gp91phox Promoter

The presence of four CDP-binding sites within the gp91phox promoter is the first example of multiple CDP-binding sites within a single promoter. However, a requirement for multiple binding sites has been reported for the activity for other transcriptional repressors, such as even-skipped, dorsal, and the Wilms' tumor suppressor, WT1 (46, 47, 48, 49). In addition, the binding of transcriptional repressors to multiple promoter sites can be cooperative. For example, binding of even-skipped to high affinity binding sites of the ultrabithorax gene promoter facilitates subsequent binding of even-skipped to low affinity sites that overlap the binding site for the transcriptional activator zeste (46). Exclusion of zeste binding appears to be at least one mechanism of transcriptional repression in this system. Similarly, dorsal binds cooperatively to multiple low affinity binding sites in the decapentalegic gene (48), and WT1 binds to both high and low affinity sites within the insulin-like growth factor II promoter (49). Interaction between CDP molecules bound to the gp91phox promoter may similarly stabilize their binding and enhance the ability of CDP to exclude transcriptional activators. Alternatively, a single CDP molecule, which contains multiple DNA-binding domains (12, 31, 50), may simultaneously interact with more than one binding site, hence causing DNA looping and affecting the ability of a transcription initiation complex to form. The gp91phox promoter therefore provides an attractive system with which to further study the mechanism of CDP-mediated transcriptional repression.

Transcriptional Regulation of the gp91phox Gene Is Complex

EMSA competition experiments support the hypothesis that CDP binding to the gp91phox promoter is mutually exclusive with that of transcriptional activating factors (Figs. 4 and 5). The down-regulation of CDP thus appears to contribute to the apparent induction of BID complexes observed in EMSA when utilizing nuclear extracts isolated from differentiated myeloid cells.2 In addition, binding of HAF-1 to a more proximal promoter element is also necessary for normal gp91phox expression (6, 7). Hence, the regulation of the gp91phox promoter is complex and requires regulated interactions of both transcriptional repressors and activators with multiple promoter elements.

No derepression occurs in HeLa and K562 cells if the CDP-binding site within the CDP-alpha element is deleted, a mutation that also removes a CP1-binding site. However, reporter gene expression is enhanced 5-10-fold in these cell lines after the CP1-binding site is specifically restored. These results indicate that CP1 functions as a transcriptional activator of the gp91phox gene promoter and is necessary for the derepressed promoter activity evident in HeLa and K562 cells. This suggests that CDP represses the gp91phox promoter, at least in part, by preventing the binding of the ubiquitous CCAAT box-binding factor CP1.

In contrast, the derepressed gp91phox promoter activity observed in HEL and PLB985 cells does not require the CP1-binding site within the CDP-alpha element (Fig. 6 and Ref. 8). The molecular basis for variable CP1 requirements between cell types is currently under investigation, but is presumably due to differences between cell types in the complement of transcriptional activating factors that interact with other elements within the gp91phox promoter. The general phenomenon of different cell types requiring distinct cis-elements to direct transcription from the gp91phox promoter has been previously described. For example, promoter mutations in chronic granulomatous disease patients lead to the absence of gp91phox expression in the majority of phagocytes, while normal gp91phox expression persists in 5-10% of phagocytes (7). Another variant chronic granulomatous disease patient has been found to express gp91phox specifically in eosinophils, but not in other phagocytes (51). The defect responsible for this unusual phenotype has not been reported. In addition, transgenic animals carrying the proximal gp91phox promoter linked to a reporter gene exhibit transgene expression in only a subset of myelomonocytic cells that express the endogenous gp91phox gene (5).

Significant progress has recently been made in the identification of transcriptional activating factors controlling myeloid-specific gene expression. Functional binding sites for the transcriptional activators CCAAT/Enhancer-binding protein-beta and PU.1 and the ubiquitous factor Sp1 have been identified in the promoters of many genes expressed in myeloid cells (52, 53, 54, 55, 56, 57, 58, 59, 60). However, these factors have not been detected binding to the gp91phox promoter. The model we present suggests an important role for the transcriptional repressor CDP in restricting expression of the gp91phox gene to mature myeloid cells. However, down-regulation of CDP DNA binding activity may not be sufficient to induce gp91phox expression, and the presence of additional lineage-restricted transcriptional activating factors may also be required for normal gp91phox promoter function. This might explain why the gp91phox gene is not induced in other cell types, such as myotubes, in which CDP has been reported to be down-regulated (10). The absence of activity for the wild-type -138 bp and -100 bp gp91phox promoter constructs in HeLa cells may reflect such a requirement for hematopoietic associated factors. Interestingly, HAF-1 binds at approximately -55 bp of the gp91phox promoter and is more abundant in K562 and HEL cells than in HeLa cells (6).

The -100 to +12 bp gp91phox promoter/luciferase construct directs significant derepressed expression in HEL, K562, and PLB985 cells (Fig. 6 and Ref. 8), suggesting that cis-elements within this proximal region are capable of directing transcription in some non-phagocytic cells in the absence of CDP-mediated transcriptional repression. This assay system provides a means to dissect the cis-elements and cognate DNA-binding proteins required for derepressed promoter activity in the absence of CDP binding. This should provide additional insight into the mechanisms involved in CDP-mediated transcriptional repression as well as permit the identification of proximal promoter elements possibly involved in normal gp91phox transcription in mature phagocytes.


FOOTNOTES

*   This work was supported in part by the Riley Memorial Association and by National Institutes of Health FIRST Award CA58947 and American Cancer Society Junior Faculty Award 421 (to D. G. S.). The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked ``advertisement'' in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
Dagger    To whom correspondence and reprint requests should be addressed: Wells Center for Pediatric Research, Riley Hospital for Children, Rm. 2600, 702 Barnhill Dr., Indianapolis, IN 46202-5225. Tel.: 317-274-8977; Fax: 317-274-8679.
1   The abbreviations used are: bp, base pairs; IFN, interferon; IRF, interferon regulatory factor; CDP, CCAAT displacement protein; EMSA, electrophoretic mobility shift assay.
2   E. Eklund, W. Luo, and D. Skalnik, submitted for publication.

Acknowledgments

We thank Stuart Orkin, in whose laboratory this study was initiated, for support and guidance. We thank Maureen Harrington for critically reading this manuscript. We also thank Diane Mathis for providing NF-Y antibodies and Riley Cancer Research for Children for supporting oligonucleotide production.


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