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(Received for publication, February 1, 1996, and in revised form, May 13, 1996)

From the Herman B Wells Center for Pediatric Research, Section of Pediatric Hematology/Oncology and the Departments of Pediatrics and Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, Indiana 46202-5225
CCAAT displacement protein (CDP) competes with
transcriptional activating proteins for binding to each of four
elements within the myeloid-specific gp91phox promoter. CDP
exhibits the strongest affinity for a site centered at
110 base pairs
(bp) of the promoter and progressively weaker affinities for three more
distal binding sites. CDP binding to each site is down-regulated during
terminal phagocytic differentiation, coincident with induction of
gp91phox expression. Deletion of the high affinity CDP-binding
site at
110 bp leads to inappropriate gp91phox promoter
activity in HeLa, K562, and HEL cells. An overlapping binding site for
the CCAAT box-binding factor CP1 is required for derepressed promoter
activity in HeLa and K562 cells, but is dispensable in HEL cells,
indicating that different cell types require distinct
cis-elements for gp91phox promoter activity.
Derepressed gp91phox promoter activity is further increased
upon removal of a second CDP-binding site centered at
150 bp,
revealing that CDP represses gp91phox expression via multiple
cis-elements. We present a model in which restriction of
gp91phox expression to mature myeloid cells involves
competition between transcriptional activators and repressors for
binding to multiple sites within the promoter.
The gp91phox gene encodes a component of the NADPH oxidase complex that is responsible for the generation of a respiratory burst in mature phagocytic blood cells (1). Absence of oxidase activity results in chronic granulomatous disease, an inherited disorder of phagocyte function, and may be due to disruption in the expression of any of several oxidase components, including gp91phox (1), p47phox (2), p67phox (3), or p22phox (4). The gp91phox gene is expressed nearly exclusively in terminally differentiating myelomonocytic cells (1), thereby providing a model system for studying the regulation of tissue- and stage-specific gene expression within the myelomonocytic lineage.
The proximal gp91phox promoter (
450 to +12
bp)1 is sufficient, and
cis-acting elements between
138 and
450 bp are required,
to direct appropriate expression of linked reporter genes in a subset
of monocytes/macrophages when introduced into transgenic mice (5). The
proximal gp91phox promoter also appropriately directs reporter
gene expression in stably transfected myeloid cells following
stimulation by interferon-
(IFN-
) (6).
The binding of transcriptional activating factors to several sites in
the gp91phox promoter is required for normal promoter function.
Mutations that ablate a binding site for a factor denoted HAF-1
(
ematopoietic
ssociated
actor)
have been identified in the gp91phox promoter of chronic
granulomatous disease patients who exhibit abnormal gp91phox
transcription (7). Ablation of the HAF-1-binding site also prevents
IFN-
induction of gp91phox promoter activity in transfected
myeloid cell lines (6). Additional transcriptional activating factors,
denoted BIDs (
inding
ncreased during
ifferentiation), bind to three sites in the
gp91phox promoter and are also required for an IFN-
response.2 The middle BID-binding site
conforms to an IFN-stimulated response element and additionally serves
as a binding site for IFN regulatory factor (IRF)-1 and
-2.2
The gp91phox promoter is additionally under the control of
transcriptional repression. Previously, we demonstrated that deletion
of the region between
133 and
100 bp leads to inappropriate
gp91phox promoter activity in transiently transfected cells
that do not normally express the gp91phox gene (8). A
ubiquitous CCAAT box-binding factor interacts with this promoter region
when nuclear extracts derived from mature myeloid cells are analyzed.
When using nuclear extracts isolated from nonexpressing cells, however,
binding of the CCAAT box-binding factor is blocked by binding of the
transcriptional repressor CCAAT displacement protein (CDP). The DNA
binding activity of CDP is down-regulated during terminal
differentiation of phagocytic cells (8). In addition, overexpression of
cloned CDP in myeloid cell lines prevents induction of the
gp91phox gene upon terminal phagocytic differentiation (9).
Therefore, the stage-specific regulation of CDP is one important step
in restricting gp91phox expression to mature phagocytic
cells.
Molecular cloning of CDP revealed it to be a 180-kDa protein related to the Drosophila homeobox protein Cut (10, 11, 12, 13, 14). Cut is involved in determining cell fates in several Drosophila tissues including sensory organs and malpighian tubules (15, 16, 17, 18, 19, 20). Cut expression is also detected in muscle, central nervous system, and ovarian follicle cells (21). However, the target genes and mechanism of action for Cut in Drosophila have not been reported.
We postulated that additional repressor elements reside upstream of the previously described CDP-binding site in the gp91phox promoter (8). This report describes the identification and functional characterization of three additional CDP-binding sites within the gp91phox promoter and illustrates the importance of transcriptional repression in the complex regulation of gp91phox expression.
Plasmids containing the regions
from
450 to +12 bp,
324 to +12 bp,
212 to +12 bp, and
100 to
+12 bp of the human gp91phox promoter and mutated promoters
lacking ~30 bp surrounding the previously reported CDP-binding site
(CDP-
) have been described (8). Human growth hormone reporter gene
constructs were previously used to investigate gp91phox
promoter function (8). The parental growth hormone reporter plasmid
exhibits a significant background activity, presumably due to cryptic
promoter activity in the vector backbone (6, 8). Consequently, promoter
fragments described above were liberated from growth hormone reporter
constructs by digestion with SalI and BamHI and
cloned into SalI/BglII-digested pXP2 (22), a
luciferase reporter gene vector (the generous gift of Yu Chung Yang).
The luciferase reporter gene utilized in this report has the advantage
of being extremely sensitive and also exhibiting a low level of
background expression.
Specific ablation of the CDP-
element (8) was performed by
polymerase chain reaction mutagenesis (23) using complementary
oligonucleotides that contain 30 bp of wild-type sequence at their
5
-end and 40 bp of mutated sequence, including a CCAAT box derived
from the
-globin promoter and 10 bp of unrelated sequence, and an
XhoI site at their 3
-end. The resultant gp91phox
promoter lacks the CDP-
site, but retains a CCAAT box in an
unaltered position relative to the transcription initiation site. The
entire nucleotide sequence of each mutagenized promoter fragment was
determined using the Sequenase system (U. S. Biochemical Corp.). The
138 to +12 bp gp91phox promoter/luciferase constructs were
generated by digesting the corresponding
450 to +12 bp constructs
with HindIII, followed by intramolecular ligation.
The human cervical carcinoma cell line HeLa (24), the human erythroleukemia cell line HEL (25), the human chronic myelogenous leukemia cell line K562 (26), and the murine fibroblast cell line 3T3 (27) were obtained from the American Type Culture Collection (Rockville, MD). The human myelomonoblastic cell line PLB985 (28) was the generous gift of Thomas Rado. Cells were grown in RPMI 1640 medium supplemented with 10% fetal calf serum, 0.2 mM glutamate, 50 units/ml penicillin, and 50 µg/ml streptomycin. HeLa and 3T3 cells were grown in similarly supplemented Dulbecco's modified Eagle's medium. Differentiation of PLB985 cells along the monocyte/macrophage lineage was induced by treatment with 0.1 mM phorbol 12-myristate 13-acetate for 48 h.
Hematopoietic cell lines (K562 and HEL) were transfected by
electroporation. For each transfection, 107 cells were
resuspended in 0.3 ml of serum-free medium and mixed with 5 µg of
gp91phox promoter/luciferase plasmid and 0.5 µg of
cytomegalovirus promoter-enhancer/
-galactosidase plasmid at room
temperature. The mixture was electroporated at 220 V and 960 microfarads, and the transfected cells were grown in 10 ml of complete
medium at 37 °C under 5% CO2. HeLa cells were
transfected using the calcium phosphate coprecipitation method
described by Chen and Okayama (29). After 10 h of incubation,
cells were harvested and washed twice with 1 × phosphate-buffered
saline, and cell pellets were collected and resuspended in 100 µl of
1 × lysis buffer (Promega). After incubation at room temperature
for 10-15 min, cell extracts were collected, and 20 µl were used to
assay luciferase activity using a Promega luciferase kit and a Lumat
9210 luminometer. 30 µl of the extracts were used to assay
-galactosidase activities as described (30). These values were used
to standardize luciferase levels to compensate for variability in
transfection efficiency between samples.
Complementary oligonucleotides
corresponding to the following regions of the gp91phox promoter
(8) were synthesized on an Applied Biosystems Model 394 synthesizer:
CDP-
(
137 to
76 bp),
5
-gctttttcagttgaccaatgattattagccaatttcgataaaagaaaaggaaaccgattgc-3
;
mutated CDP-
,
5
-gcttccgcgccagccaatgagcgccgccactcgaggtcgccggtcgcgtaaaaccgattgcg-3
;
CDP-
(
182 to
112 bp),
5
-tttgtagttgttgaggtttaaagatttaagtttgttatggatgcaagcttttcagttgaccaatgattat-3
;
-CDP-
(
182 to
124 bp),
5
-tttgtagttgttgaggtttaaagatttaagtttgttatggatgcaagcttttcagtt-3
;
5
-CDP-
(
182 to
137 bp),
5
-tttgtagttgttgaggtttaaagatttaagtttgttatggatgca-3
; 3
-CDP-
(
138
to
112 bp), 5
-agcttttcagttgaccaatgattat-3
; CDP-
(
241 to
192
bp), 5
-agaaattggtttcattttccactatgtttaattgtgactggatcattat-3
;
CDP-
(
261 to
211 bp),
5
-gttatttatctcttagttgtagaaattggtttcattttccactatgttta-3
;
CDP-
(
382 to
331 bp),
5
-tctagttgagtggctaaaaattgtgatcaaatagctggttagttaaaaa-3
; and Mbo (
39
to
1 bp), 5
-gaagcatagtatagaagaaaggcaaacacaacacattca-3
. Additional
oligonucleotides used in this study were as follows: E36 (31),
5
-cggatccgaattcatcgataatcgattat-3
;
-globin (32),
5
-ggcggcgctcattggctggcgcggagcccg-3
; and IRF-1 (33),
5
-acggatccggcatattcaaaaccgaaaccaagtccctcgagac-3
.
Nuclear extracts were
prepared as described (34). Double-stranded oligonucleotides were
subcloned into the pUC19 plasmid, released by restriction enzyme
digestion, and labeled by T4 polynucleotide kinase using
[
-32P]ATP or with Klenow enzyme using
[
-32P]dCTP. Radiolabeled probes were resolved by
polyacrylamide gel electrophoresis and eluted by the crush and soak
method (30). Electrophoretic mobility shift assays (EMSAs) were
performed as described previously (8) with slight modification.
Briefly, 3-6 µg of nuclear extract were mixed with 0.5 µg of
poly[d(I·C)] and competitor double-stranded oligonucleotides, where
indicated, in a 20-µl reaction volume. The mixture was incubated on
ice for 15 min prior to the addition of 15,000 cpm of probe. After
another 15-min incubation on ice, samples were loaded onto a 0.5 × Tris borate/EDTA, 3.5% nondenaturing polyacrylamide gel (except
where otherwise indicated), and electrophoresis was carried out at
4 °C and 25 mA for 90 min. Antiserum raised against CDP (11), NF-Y
(35), or preimmune serum was added to the binding reactions 10 min
prior to the probe where indicated. NF-Y antiserum was the generous
gift of Diane Mathis.
Previously, we
demonstrated that CDP binding to the gp91phox promoter (
132
to
86 bp) is necessary to repress promoter function in the erythroid
cell line HEL and in the undifferentiated myeloid cell line PLB985 (8).
We hypothesized that additional repressor sites were located upstream
of
138 bp because a progressively greater degree of derepression was
observed when constructs lacking the CDP-binding site were analyzed in
the context of
1542 bp,
212 bp, or
138 bp of gp91phox
promoter (8). Experiments were conducted to further characterize the
gp91phox promoter region between
450 and
138 bp.
EMSA performed with nuclear extracts isolated from HeLa cells
identifies three upstream gp91phox promoter fragments (CDP-
,
182 to
112 bp; CDP-
,
241 to
192 bp; and CDP-
,
382 to
313 bp) (Fig. 1A), each of which forms a
complex that exhibits a mobility identical to that previously described
for the CDP complex formed with the CDP-
probe (
137 to
76 bp)
(Fig. 1B,
lanes). Similar complexes are also
observed using nuclear extracts isolated from K562 and HEL cells (data
not shown). Each of the four complexes is specifically disrupted by
antiserum raised against CDP (Fig. 1B, CDP-ab
lanes), but not by preimmune serum (preimmune lanes).
Furthermore, each of these complexes is absent when EMSA is performed
with nuclear extracts isolated from terminally differentiated PLB985
myeloid cells that lack CDP DNA binding activity (8) and express the
endogenous gp91phox gene (Fig. 1C, Macrophage
lanes). We conclude that four CDP-binding sites reside within the
382 to
76 bp region of the gp91phox promoter.
, -
, -
,
and -
) derived from the gp91phox promoter and utilized in
EMSA. B, CDP binds to each of four elements derived from the
gp91phox promoter. EMSA was performed as described under
``Experimental Procedures.'' Probes were incubated with 3 µg of
nuclear extract isolated from HeLa cells following preincubation with
CDP antibody (CDP-ab) or preimmune serum as indicated. The
CDP-
probe used in this experiment corresponds to a dimer of the
241 to
192 bp gp91phox promoter, which explains the
slightly higher position of the free probe and CDP complex. The
position of the CDP complexes is indicated with an arrow.
C, CDP binding to four gp91phox promoter elements is
down-regulated during myeloid differentiation. Probes were incubated
with 3 µg of nuclear extract isolated from PLB985 cells induced by
phorbol 12-myristate 13-acetate treatment to differentiate along the
macrophage lineage or nuclear extract isolated from HeLa cells. The
position of the CDP complexes is indicated with an
arrow.
EMSA competition assays were performed to examine the sequence
specificity and relative binding affinity of CDP for each of the four
binding sites within the gp91phox promoter (Fig.
2). Each CDP complex is disrupted by the addition to the
binding reaction of a molar excess of homologous double-stranded
oligonucleotide competitor, but not by the addition of a heterologous
oligonucleotide competitor (a CCAAT box element derived from the
-globin promoter). Cross-competition studies using the four
CDP-binding sites as competitors reveal that CDP exhibits a range of
affinities for the four binding sites within the gp91phox
promoter. For example, the CDP-
site efficiently disrupts each of
the four CDP complexes, while the CDP-
site efficiently disrupts
only the CDP-
complex and partially disrupts the CDP-
complex at
high competitor concentration. Overall, the affinity of CDP for each
site correlates with the distance from the site of transcription
initiation. CDP exhibits the greatest affinity for the CDP-
site and
the weakest affinity for the CDP-
site (Fig. 2).
-globin CCAAT box competition for the CDP-
probe is not shown since it has been previously reported to not affect
the CDP complex (8). ND, not determined.
The CDP-
and CDP-
oligonucleotides overlap by 25 bp. This region
includes a portion of the DNase I footprint (
132 to
86 bp) produced
by CDP binding to the CDP-
element (8). Additional studies were
performed with oligonucleotides corresponding to truncated portions of
CDP-
(Fig. 3A) to determine if CDP binding
to the CDP-
oligonucleotide is due to the overlapping CDP-
sequence. An oligonucleotide competitor lacking the 3
-half of the
overlapping region (
-CDP-
) exhibits a significantly reduced
ability to disrupt the CDP complex formed with the full-length
CDP-
-binding site probe (Fig. 3B, first triplet of
lanes). However, a probe lacking the entire overlapping region
(5
-CDP-
) and the
-CDP-
probe both produce CDP complexes in
EMSA, although of weaker intensity compared with the full-length
CDP-
-binding site probe (Fig. 3B, middle two
triplets of lanes). Each of these CDP complexes is disrupted by
competition with the full-length CDP-
oligonucleotide. However, a
probe restricted to the overlapping region (3
-CDP-
) fails to form a
CDP complex when used as a probe (Fig. 3B, last
triplet of lanes). We conclude that the CDP-
element contains
an independent CDP-binding site, but sequence that overlaps with
CDP-
appears necessary for full binding affinity of CDP for the
CDP-
site.
Localization of the CDP-binding site within
the CDP-
oligonucleotide. A, shown is an illustration of
oligonucleotides corresponding to regions of the gp91phox
promoter that were used in EMSA: CDP-
,
137 to
76 bp; CDP-
,
182 to
112 bp;
-CDP-
, truncated CDP-
lacking one-half of
the overlapping region between the CDP-
and CDP-
oligonucleotides
(
182 to
124 bp); 5
-CDP-
, truncated CDP-
lacking the
overlapping region between the CDP-
and CDP-
oligonucleotides
(
182 to
137 bp); and 3
-CDP-
, containing the region common to
the CDP-
and CDP-
oligonucleotides (
138 to
112 bp).
B, sequence upstream of CDP-
is required for binding of
CDP to the CDP-
element. EMSA was performed as described under
``Experimental Procedures'' using 3 µg of nuclear extract isolated
from HeLa cells. A competitor oligonucleotide containing the
CP1-binding site of the
-globin promoter was used to identify the
CP1 complex. The positions of the CDP and CP1 complexes are indicated
by arrows. C, the CCAAT box-binding factor that
binds to the CDP-
probe is recognized by NF-Y (CP1) antiserum. EMSA
was performed with the CDP-
probe and nuclear extract isolated from
3T3 cells. 20 ng of
-globin competitor were added where indicated. NS, normal serum. The
positions of the NF-Y (CP1) and supershifted (SS) complexes
are indicated by arrows. Ab, antibody.
The 3
-CDP-
probe forms a complex with a CCAAT box-binding factor
that is disrupted by competition with an oligonucleotide containing the
-globin promoter CCAAT box (Fig. 3B, last triplet
of lanes). This is consistent with previous findings that a CCAAT
box within the CDP-
probe (
123 to
119 bp) is a binding site for
a protein that exhibits a binding specificity similar to that of CP1
(8). Since the time of that report, antibodies directed against NF-Y,
the murine homologue of CP1, have been described (35). An additional
EMSA was performed with nuclear extracts isolated from murine 3T3 cells
to determine if NF-Y antiserum affects the CCAAT box-binding factor
complex produced with the CDP-
probe. The CDP-
probe generates a
complex that is disrupted by the addition of a competitor derived from
the
-globin CCAAT box region (Fig. 3C), consistent with
the HeLa results presented in Fig. 3B. The addition of
anti-NF-Y antiserum to the binding reaction alters the CCAAT
box-binding complex and generates a supershifted band (Fig.
3C). This confirms that NF-Y, the murine homologue of CP1,
binds to the CCAAT box at
123 to
119 bp of the gp91phox
promoter. No effect is observed following the addition of normal serum
to the reaction.
CDP has been postulated to
repress transcription by competing with transcriptional activating
factors for overlapping promoter-binding sites (8, 36, 37). As
illustrated in Fig. 4, we have previously demonstrated
the presence of several binding sites for transcriptional activating
proteins (CP1 and BID factors) that overlap the CDP-binding sites
described in this report (8).2 This suggests a model in
which interaction of the activators with the gp91phox promoter
is prevented by the binding of CDP in non-phagocytic cells. EMSA
experiments were carried out under conditions of limiting probe to
directly assess whether the binding of CDP is mutually exclusive with
the binding of these activating factors.
,
,
,
and
indicate the positions of each of the four
oligonucleotides used in this report as CDP-binding sites. Heavy
bars above transcriptional activating factors denote corresponding
DNase I footprints (8).2
When nuclear extracts isolated from HeLa cells are used in EMSA, the
CDP complex predominates for the CDP-
, -
, -
, and -
gp91phox promoter probes (the CDP-
oligonucleotide is
shifted 20 bp upstream relative to the CDP-
site)2 (Fig.
5A). However, the CP1 and BID complexes
become more intense following disruption of the CDP complex by the
addition of a high affinity CDP-binding site competitor oligonucleotide
(E36) to the reaction (Fig. 5A, center lane for
each probe), suggesting that CDP binds preferentially to each probe to
the exclusion of BID and CP1. Similar results were obtained following
preincubation of nuclear extract with anti-CDP antiserum (data not
shown). An IRF-binding site is also found within the CDP-
site,
although BID and IRF-2 comigrate on a 3.5% gel. A similar experiment
analyzed on a 6% gel revealed that both BID and IRF-2 binding are
similarly increased following disruption of the CDP complex by the
addition of the E36-binding site competitor (data not shown).
39 to
1 bp region of the gp91phox promoter and serves as a
nonspecific competitor. B, CDP fails to form a ternary
complex with the DNA probe and transcriptional activators. EMSA was
performed as described for A. The
-globin CCAAT box
oligonucleotide in increasing amounts was used as a specific competitor
for CP1 binding (32), and an IRF-binding site oligonucleotide was used
as a competitor for BID and IRF-2 binding (33).
Ternary complexes containing probe and both CDP and a transcriptional
activating factor should not form if CDP binds DNA in a mutually
exclusive manner. Complexes trapped in the gel wells appear to contain
CDP as they are disrupted by the addition of the E36 CDP-binding site
oligonucleotide (Fig. 5, A and B). However, they
are not affected by competition with oligonucleotides known to disrupt
BID, IRF-2 (IRF-1 oligonucleotide), or CP1 (
-globin oligonucleotide)
complexes or by an unrelated oligonucleotide (Mbo) (Fig.
5B). Hence, no ternary complex is detected that contains
probe and both CDP and CP1, IRF, or BID.
A series of
luciferase reporter gene constructs were generated that contain
variable lengths of the gp91phox promoter, and hence different
numbers of CDP-binding sites, to assess the contribution of the four
CDP-binding sites to the transcriptional regulation of the
gp91phox promoter. All constructs also include the
gp91phox 5
-untranslated region (up to +12 bp). The promoter
activity of each of these constructs was determined following transient
transfection into tissue culture cells.
The
450 to +12 bp gp91phox promoter/luciferase construct
(wt450) produces a low level of reporter gene expression following
transfection into cell lines that do not express the endogenous
gp91phox gene, such as HEL, K562, and HeLa cells (Fig.
6). 5
-Promoter truncations that remove one or two of
the upstream CDP-binding sites (wt324 and wt212) have little effect on
promoter activity. However, a truncation that removes the three
upstream CDP-binding sites (wt138) results in a statistically
significant increase in reporter gene expression as compared with the
wt450 construct in both K562 and HEL cells (2.6-fold increase,
p < 0.01; and 1.8-fold increase, p < 0.05, respectively). Deletion of four CDP-binding sites, leaving only
the
100 to +12 bp region of the proximal gp91phox promoter,
results in a further increase of promoter activity in K562 and HEL
cells (5.4- and 19.5-fold increases, respectively; p < 0.01). None of the truncated gp91phox promoter fragments direct
a significantly increased level of reporter gene expression in HeLa
cells, however. These results suggest that CDP binding is required for
repression of gp91phox gene expression in at least some
non-phagocytic cells and confirm the functional significance of both
the CDP-
- and CDP-
-binding sites in repressing gp91phox
promoter activity in these cells.
site) is shown as a
filled circle; the CCAAT box derived from the
-globin
gene promoter is represented by an open circle; and the
CDP-
site deletion is shown as a
. Each data number represents
the result of multiple transfections using multiple plasmid
preparations.
Additional experiments were performed to analyze in more detail the
functional significance of the CDP-
-binding site. Specific deletion
of the proximal CDP/CP1-binding site in the context of the
450 to +12
bp gp91phox promoter (del450) leads to derepression of
luciferase expression in HEL cells (3.9-fold increase;
p < 0.01), confirming the importance of the
CDP-
-binding site in the repression of the gp91phox promoter
(Fig. 6). Similar results using a human growth hormone reporter gene
were previously reported in both PLB985 and HEL cells for this deletion
construct (8). Derepressed expression in HEL cells is also observed
with this deletion in the context of
324 to +12 bp (del324) or
212
to +12 bp (del212) of gp91phox promoter (3.9- and 4.0-fold
increases, respectively, relative to the corresponding wild-type
constructs; p < 0.01) (Fig. 6).
However, these internal deletion constructs fail to exhibit a similar
derepression in HeLa and K562 cells. Because the promoter deletion is
not specific for the CDP-binding site, but rather also removes an
overlapping binding site for CP1, we reasoned that in HeLa and K562
cells, the binding of CP1 may be necessary for gp91phox
promoter activity in the absence of CDP binding. To test this
hypothesis, a construct was created that lacks the CDP-
CDP-binding
site, but retains a CP1-binding site (see ``Experimental
Procedures''). EMSA was performed with wild-type and mutated CDP-
site probes to determine the specificity of this mutation. An
oligonucleotide competitor containing the CDP-specific mutation
disrupts the CP1 complex, but not the CDP complex that forms with the
wild-type probe (Fig. 7). When used as a probe, the
oligonucleotide containing the CDP-specific mutation fails to generate
a CDP complex, but forms a complex containing CP1 that is disrupted by
a competitor oligonucleotide containing the CP1-binding site of the
-globin promoter.
site specifically
abolishes CDP binding. EMSA was performed as described under
``Experimental Procedures'' using nuclear extract isolated from HeLa
cells and 40 ng of oligonucleotide competitors representing the
wild-type (wt) CDP-
site, the mutated (mut)
CDP-
site, or the CCAAT box from the
-globin promoter as
indicated. Probes correspond to wild-type or mutated CDP-
sites (see
``Experimental Procedures'' for sequences). The positions of CDP and
CP1 complexes are indicated by arrows.
A luciferase reporter gene construct containing the CDP mutation within
the CDP-
element (mut450) produces significant derepressed
expression following transfection into HeLa cells (4.8-fold increase;
p < 0.01), K562 cells (7.7-fold increase;
p < 0.01), and HEL cells (3.9-fold increase;
p < 0.01) (Fig. 6). Similarly derepressed promoter
activity is observed when the CDP-specific mutation is analyzed in the
context of
324 to +12 bp (mut324) or
212 to +12 bp (mut212) of
proximal gp91phox promoter. However, a significantly greater
level of gp91phox promoter activity is observed when the
CDP-specific mutation is analyzed in the absence of the CDP-
element
(mut138) (HeLa cells, 7.1-fold increase; K562 cells, 16.4-fold
increase; and HEL cells, 6.7-fold increase; p < 0.01).
This confirms the importance of the CDP-
-binding site in
gp91phox regulation as well as the requirement of CP1 binding
for full promoter activity in HeLa and K562 cells. In addition, the
difference in all three cell lines between the mut212 and mut138
promoter activities provides additional functional evidence that the
CDP-
-binding site also represses gp91phox expression.
Transcriptional repressors play a crucial role in controlling gene expression during developmental processes (38, 39, 40, 41, 42). For example, neuron-specific silencer factor represses a wide range of neuron-specific genes and is down-regulated during neural differentiation (43). Hence, regulation of a repressor can act as a master regulatory switch, just as induction of transcriptional activators such as GATA-1 or MyoD has been postulated to serve as a global activator of specific developmental programs (44, 45).
This report examines four binding sites for the transcriptional
repressor CDP within the proximal promoter region (
382 to
76 bp) of
the myelomonocyte-specific gp91phox gene. Two of these
CDP-binding sites repress gp91phox transcription in cells that
do not express the endogenous gp91phox gene. Repression
activity in transient transfection assays is not evident for the two
distal CDP-binding sites. This may be because they appear to be the two
weakest binding sites, and their effects may therefore be too subtle to
detect in transient transfection assays. In addition, derepressed
promoter activity following removal of upstream CDP-binding sites may
require the retention of overlapping binding sites for transcriptional
activators (Fig. 4), similar to the requirement for CP1 binding to the
CDP-
site for expression in HeLa and K562 cells (Fig. 6). Efforts to
specifically ablate the upstream CDP-binding sites have thus far been
unsuccessful, but may be possible when the binding properties of the
transcriptional activating protein(s) are fully characterized.
The presence of four CDP-binding sites within the gp91phox promoter is the first example of multiple CDP-binding sites within a single promoter. However, a requirement for multiple binding sites has been reported for the activity for other transcriptional repressors, such as even-skipped, dorsal, and the Wilms' tumor suppressor, WT1 (46, 47, 48, 49). In addition, the binding of transcriptional repressors to multiple promoter sites can be cooperative. For example, binding of even-skipped to high affinity binding sites of the ultrabithorax gene promoter facilitates subsequent binding of even-skipped to low affinity sites that overlap the binding site for the transcriptional activator zeste (46). Exclusion of zeste binding appears to be at least one mechanism of transcriptional repression in this system. Similarly, dorsal binds cooperatively to multiple low affinity binding sites in the decapentalegic gene (48), and WT1 binds to both high and low affinity sites within the insulin-like growth factor II promoter (49). Interaction between CDP molecules bound to the gp91phox promoter may similarly stabilize their binding and enhance the ability of CDP to exclude transcriptional activators. Alternatively, a single CDP molecule, which contains multiple DNA-binding domains (12, 31, 50), may simultaneously interact with more than one binding site, hence causing DNA looping and affecting the ability of a transcription initiation complex to form. The gp91phox promoter therefore provides an attractive system with which to further study the mechanism of CDP-mediated transcriptional repression.
Transcriptional Regulation of the gp91phox Gene Is ComplexEMSA competition experiments support the hypothesis that CDP binding to the gp91phox promoter is mutually exclusive with that of transcriptional activating factors (Figs. 4 and 5). The down-regulation of CDP thus appears to contribute to the apparent induction of BID complexes observed in EMSA when utilizing nuclear extracts isolated from differentiated myeloid cells.2 In addition, binding of HAF-1 to a more proximal promoter element is also necessary for normal gp91phox expression (6, 7). Hence, the regulation of the gp91phox promoter is complex and requires regulated interactions of both transcriptional repressors and activators with multiple promoter elements.
No derepression occurs in HeLa and K562 cells if the CDP-binding site
within the CDP-
element is deleted, a mutation that also removes a
CP1-binding site. However, reporter gene expression is enhanced
5-10-fold in these cell lines after the CP1-binding site is
specifically restored. These results indicate that CP1 functions as a
transcriptional activator of the gp91phox gene promoter and is
necessary for the derepressed promoter activity evident in HeLa and
K562 cells. This suggests that CDP represses the gp91phox
promoter, at least in part, by preventing the binding of the ubiquitous
CCAAT box-binding factor CP1.
In contrast, the derepressed gp91phox promoter activity
observed in HEL and PLB985 cells does not require the CP1-binding site
within the CDP-
element (Fig. 6 and Ref. 8). The molecular basis for
variable CP1 requirements between cell types is currently under
investigation, but is presumably due to differences between cell types
in the complement of transcriptional activating factors that interact
with other elements within the gp91phox promoter. The general
phenomenon of different cell types requiring distinct
cis-elements to direct transcription from the
gp91phox promoter has been previously described. For example,
promoter mutations in chronic granulomatous disease patients lead to
the absence of gp91phox expression in the majority of
phagocytes, while normal gp91phox expression persists in
5-10% of phagocytes (7). Another variant chronic granulomatous
disease patient has been found to express gp91phox specifically
in eosinophils, but not in other phagocytes (51). The defect
responsible for this unusual phenotype has not been reported. In
addition, transgenic animals carrying the proximal gp91phox
promoter linked to a reporter gene exhibit transgene expression in only
a subset of myelomonocytic cells that express the endogenous
gp91phox gene (5).
Significant progress has recently been made in the identification of
transcriptional activating factors controlling myeloid-specific gene
expression. Functional binding sites for the transcriptional activators
CCAAT/Enhancer-binding protein-
and PU.1 and the ubiquitous factor
Sp1 have been identified in the promoters of many genes expressed in
myeloid cells (52, 53, 54, 55, 56, 57, 58, 59, 60). However, these factors have not been detected
binding to the gp91phox promoter. The model we present suggests
an important role for the transcriptional repressor CDP in restricting
expression of the gp91phox gene to mature myeloid cells.
However, down-regulation of CDP DNA binding activity may not be
sufficient to induce gp91phox expression, and the presence of
additional lineage-restricted transcriptional activating factors may
also be required for normal gp91phox promoter function. This
might explain why the gp91phox gene is not induced in other
cell types, such as myotubes, in which CDP has been reported to be
down-regulated (10). The absence of activity for the wild-type
138 bp
and
100 bp gp91phox promoter constructs in HeLa cells may
reflect such a requirement for hematopoietic associated factors.
Interestingly, HAF-1 binds at approximately
55 bp of the
gp91phox promoter and is more abundant in K562 and HEL cells
than in HeLa cells (6).
The
100 to +12 bp gp91phox promoter/luciferase construct
directs significant derepressed expression in HEL, K562, and PLB985
cells (Fig. 6 and Ref. 8), suggesting that cis-elements
within this proximal region are capable of directing transcription in
some non-phagocytic cells in the absence of CDP-mediated
transcriptional repression. This assay system provides a means to
dissect the cis-elements and cognate DNA-binding proteins
required for derepressed promoter activity in the absence of CDP
binding. This should provide additional insight into the mechanisms
involved in CDP-mediated transcriptional repression as well as permit
the identification of proximal promoter elements possibly involved in
normal gp91phox transcription in mature phagocytes.
To whom correspondence and reprint requests should be addressed:
Wells Center for Pediatric Research, Riley Hospital for Children, Rm.
2600, 702 Barnhill Dr., Indianapolis, IN 46202-5225. Tel.:
317-274-8977; Fax: 317-274-8679.
We thank Stuart Orkin, in whose laboratory this study was initiated, for support and guidance. We thank Maureen Harrington for critically reading this manuscript. We also thank Diane Mathis for providing NF-Y antibodies and Riley Cancer Research for Children for supporting oligonucleotide production.
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