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(Received for publication, February 14, 1996, and in revised form, May 16, 1996)
,From the Department of Radiation Oncology, University of Pittsburgh Medical Center and University of Pittsburgh Cancer Institute, Pittsburgh, Pennsylvania 15213
The expression of the von Willebrand factor (vWf)
gene is restricted to endothelial cells and megakaryocytes. We have
previously reported the identification of a region of the vWf gene that
regulates its cell-type-specific expression in cell culture. This
region (spanning nucleotides
487 to +247) consists of a core promoter
(spanning nucleotides
90 to +22), a positive regulatory region
(spanning nucleotides +155 to +247), and a negative regulatory region
spanning nucleotides
312 to
487. To identify the trans-acting
factor(s) that interacts with the negative regulatory region, we
carried out gel mobility and DNase1 footprint analyses of sequences
312 to
487. These analyses demonstrated that an NF1-like protein
interacts with DNA sequences spanning
440 to
470 nucleotides in the
negative regulatory region of the vWf promoter. Base substitution
mutations of the NF1 binding site abolished the NF1-DNA interaction.
Furthermore, mutation of the NF1 binding site in the promoter fragment
(
487 to +155) that contained the core and the negative regulatory
region resulted in activation of the mutant promoter in both
endothelial and nonendothelial cells. The wild type promoter fragment
(
487 to +155) was not activated in either cell type. These results
demonstrate that an NF1-like protein functions as a repressor of vWf
promoter activity. In contrast, the mutation of the same NF1 binding
site, but now in the context of the larger 734-base pair endothelial
cell-specific promoter fragment (
487 to +247), did not result in
promoter activation in nonendothelial cells. The data indicate that
there are additional repressor elements within the vWf promoter region
suppressing its activity specifically, in nonendothelial cells, and
suggest that there is a secondary repressor element(s) that is located
in the terminal region of the first exon of this gene.
Endothelial cells are known to have a fundamental role in a variety of physiological and pathophysiological processes including tissue homeostasis, blood tissue exchange, thrombosis, angiogenesis, and cancer metastasis (1, 2, 3, 4, 5, 6). Therefore, defining the basic molecular determinants of the endothelial cell phenotype is important to a variety of clinical and basic science disciplines (6). The molecular mechanism that controls the lineage specificity of endothelial cells is not well understood. One approach toward understanding the lineage specificity of endothelial cells is through investigation of the mechanism that regulates transcription of endothelial cell-specific genes, such as the gene that codes for von Willebrand factor (vWf).1
The protein vWf is a glycosylated protein that circulates in blood plasma as multimers of up to 100 subunits (7). The vWf gene is located on chromosome 12, spans ~178-kilobase pairs, and is interrupted by 51 introns (8). The biosynthesis and secretion of vWf have been extensively studied (7, 9, 10). Expression of the vWf is highly restricted to endothelial cells and megakaryocytes and is most often used as a marker for endothelial cell-specific differentiation (11). In addition, vWf has a central role in at least two major aspects of hemostasis, mediation of platelet interaction with damaged endothelial surfaces and stabilization of factor VIII in the circulation (7, 12). Investigation of the mechanism of endothelial cell-specific regulation of the vWf gene may also provide insight into the nature of the molecular defects that result in vWf quantitative deficiencies in patients with von Willebrand disease.
The lineage specificity of differentiated cells has been proposed to depend upon the cell-type-specific distribution of various transcription factors (13). Through interactions with cis-acting DNA elements located in the promoter or enhancer regions of a cell-specific gene, such transcription factors regulate the expression of genes that are specific to that particular lineage. This molecular regulatory system is best exemplified by GATA transcription factors in erythroid specific hematopoiesis (14). Until recently most emphasis has been on the factors that positively regulate gene expression. There is increasing evidence to suggest that trans-acting factors that negatively regulate gene expression are also important in determining cell lineage specificity (15, 16). The presence of negative regulatory elements and repressors has been reported in many genes including those for yeast mating type (17), chicken lysozyme (18), rat growth hormone (19), and others (15, 16). In addition it has been shown that trans-acting factors such as hormone receptors can function both as repressors and activators depending on the sequence context of the promoters (16, 20). Direct evidence for the role of repressors in regulating cell-type-specific gene expression was provided by the recent report of Chong et al. (21) that describes a repressor protein REST. The REST protein is expressed in all cell types except those of neuronal origin and inhibits the expression of the sodium channel gene in all cells, except those of neuronal origin (21).
One direct method to identify both positive and negative factors that
may regulate the endothelial cell-type-specific expression of the vWf
gene would be to identify the cis-acting elements that regulate gene
expression. Such cis-acting regulatory elements may then be used to
identify and characterize the trans-acting factors that bind to them.
We have identified a region of the vWf gene spanning sequences
487 to
+247 bp that mediates the endothelial cell-specific expression of a
heterologous reporter gene in cell culture (22). This region consists
of a core promoter spanning
90 to +22 bp (+1 being the transcription
start site) which is not cell-type-specific, a negative regulatory
region located within
312 to
487 bp, and a positive regulatory
region located in the 100-bp terminal sequences of the first exon (+150
to +247). We have shown that the negative regulatory region inhibits
transcription in all cell types studied. The positive regulatory region
is required to overcome the inhibitory negative regulator in
endothelial cells. Furthermore, an intact GATA binding site in the
positive regulatory region is necessary for endothelial cell-specific
activation of the promoter (22).
We now report that an NF1-like protein (23) interacts with its cognate cis-acting element in the negative regulatory region of the vWf promoter and through this interaction inhibits promoter activity in both endothelial and nonendothelial cells. We also report that there are additional negative regulatory element(s), located in the terminal region of the first exon, that inhibit vWf promoter activity in nonendothelial cells.
Generation of the plasmids HGH-1,
HGH-B, and HGH-K are previously described (22). To generate plasmids
HGH-Brm3 and HGH-Krm3, appropriate fragments of the vWf gene (
487 to
+155 for HGH-Brm3 and
487 to +247 for HGH-Krm3) were amplified using
PCR with 49- and 39-mer oligonucleotides as primers. These
oligonucleotides contained 40 and 30 bases that were complementary to
the region of interest, and the remaining 9 bases at the 5
end of each
oligonucleotide contained a SalI restriction site.
Oligonucleotides complementary to
487 to
447 containing the 3-bp
substitution at positions
452,
453, and
454 were used in
combination with oligonucleotide complementary to +125 to +155 to
generate Brm3 fragment and +217 to +247 to generate Krm3 fragment. The
resulting fragments were cloned into the unique SalI site
upstream of the growth hormone structural gene in plasmid p
HGH
(obtained from Nichols Institute Diagnostics). The resulting HGH-Brm3
and HGH-Krm3 plasmids were sequenced using the Promega Sequenase kit
that confirmed the presence of the required three-base substitutions,
with no other mutations in the vWf fragments.
Primary bovine aorta endothelial (BAE) cells and bovine
smooth muscle (BSM) cells were maintained as described previously (22).
Primary cells, between passages 7 and 12, were used for transfection at
50-70% confluency. Transfections were carried out by the calcium
phosphate coprecipitation method (24). The precipitates were left on
BAE cells for 6 h and on BSM cells for 16 h. Cells were
transfected with 25 µg of the various vWf-HGH plasmids. To determine
transfection efficiency, 5 µg of plasmid
SVHP
WT (which contains
human
-globin structural gene and promoter (25)) was cotransfected
with each test plasmid. The media of the transfected cells were assayed
for the presence of growth hormone 72 h after removal of the
calcium phosphate coprecipitate. The growth hormone assays were
performed as described by Allegro (Nichols Institute
Diagnostics).
Total RNA was isolated from cells
by the guanidinium isothiocyanate method as described previously (26).
Single-stranded vWf antisense RNA complementary to the 5
-untranslated
and flanking region of vWf gene was used as the probe. For synthesis of
the probe, a fragment covering the PvuII (+155) to
EcoRI (
2182) sites was cloned into the SmaI
site of vector pGEM2 with the PvuII end closest to the T7
promoter to generate the plasmid pPT2. The antisense RNA probe was
generated by linearization of this plasmid at the unique
KpnI site (
620 in the vWf fragment) and transcription with
T7 polymerase as described by Promega Biotec. Single-stranded RNA probe
complementary to globin mRNA was generated from EcoRI
digestion and SP6 polymerase transcription of a template plasmid, made
by insertion of the 5
fragment of the
-globin gene (
128 to +351)
into the SP6-PL1 vector (27). Total RNA (25 µg for vWf and 10 µg
for globin RNA) and 100,000 cpm of antisense RNA probe (specific
activity, 108 cpm/µg) were resuspended in 80% formamide,
40 m PIPES (pH 6.7), 0.4 NaCl, 1 m EDTA and allowed to hybridize at 50 °C for 16 h.
RNase digestion was carried out in the presence of a mixture of 40 µg
of pancreatic RNase A per ml, 2 µg of RNase T per ml, 10 m Tris-HCl (pH 7.5), 5 m EDTA, and 400 m NaCl at 30 °C for 1 h. The reaction was
terminated by addition of 20 µl of 10% sodium dodecyl sulfate and 50 µg of proteinase K, followed by phenol extraction and ethanol
precipitation. Samples were then electrophoresed on a denaturing 6%
polyacrylamide gels.
Nuclear extracts
from BAE and BSM cells were prepared by the method of Schreiber
et al. (28). DNase1 footprint analysis was carried by
incubating 30 µg of nuclear extract with 5
end-labeled probe
spanning nucleotide
550 to
300 sequences. The probe was generated
using PCR and primers that corresponded to
300 to
330 and
550 to
520. The primer corresponding to
300 to
330 was radioactively
labeled using polynucleotide kinase and
-32P. The
end-labeled probe (10,000 cpm) and nuclear extracts were incubated on
ice for 30 min in the presence of 2.5 m CaCl2,
5 m MgCl2, and 2 µg of poly(dI-dC).
Following incubation samples were treated with 0, 10, 20, and 50 µg/ml DNase1 for 2 min at room temperature. The DNase1 digestion was
terminated by addition of 2 µl of 0.5 EDTA, and DNA was
purified by phenol/chloroform extraction and ethanol precipitation.
Purified DNA was analyzed on 8% polyacrylamide sequencing gel. A
sequencing reaction of the same labeled DNA fragment was run in
parallel on the same gel. For gel mobility experiments the
double-stranded oligonucleotides used as probes corresponded to
470
to
500,
410 to
440, and wild type or mutated (3-bp substitution)
440 to
470 sequences. Oligonucleotides corresponding to wild type
and mutated NF1 binding site of the adenovirus replication of origin
were as described (23, 29). The sequence of the wild type and mutant
adenovirus NF1-containing oligonucleotide was as shown. The consensus
recognition sequence is underlined. The bold letters in the mutant
oligonucleotide represent the base substitutions. A, wild type,
CCTTATTT
TTGAA
TATGATAATG; mA mutant,
CCTTATTATCGATTGAAGCTTATATGATAATG.
Binding reactions were carried out in the presence (100 ×) or absence
of competitors (wild type or mutant oligonucleotides). The 5
end-labeled probes (5000 cpm, approximately 3 × 105
cpm/ng) were incubated with 3 µg of nuclear extract, 1 µg of
poly(dI-dC), 0.5 m dithiothreitol in a buffer containing
(final concentration) 10 m HEPES (pH 7.8), 50 m KCl, 5 m MgCl2, 1 m EDTA, and 5% glycerol. The reaction mixture, in a final
volume of 20 µl, was incubated on ice for 20 min, and DNA-protein
complex was separated from unbound probe on a 5% polyacrylamide gel
run in 0.5 × TBE (90 m Tris borate (pH 8.2), 2.5 m EDTA) at 4 °C.
We have
previously reported that the region of the vWf gene spanning
nucleotides
90 to +155 can function as a promoter and drive the
expression of a heterologous growth hormone gene in bovine endothelial
cells, bovine smooth muscle cells, and HeLa cells (22). The activity of
this nonspecific promoter was inhibited by sequences spanning
312 to
487 nucleotides in all three cell types studied (22). We hypothesized
that this inhibition was accomplished through binding of a repressor
protein(s) that recognizes a specific cis-acting DNA element(s) located
somewhere within this approximately 200-bp region.
To determine whether there is a protein that interacts with DNA
sequences in the negative regulatory region, a footprint analysis was
carried out. The DNA probe for these analyses was a 5
end-labeled
fragment corresponding to
320 to
550 sequences. The PCR-generated
radioactive-labeled fragment was incubated with 30 µg of nuclear
extract prepared from BAE cells as described under ``Materials and
Methods.'' The DNA/protein mixtures were digested with various
concentrations of DNase1, and purified DNA was analyzed on an 8%
polyacrylamide sequencing gel. The results of these analyses indicated
the presence of a protected region covering
442 to
471 sequences
(Fig. 1). A protected region that covered sequences
500 to
530 was also observed; however, this was not further
analyzed since this region was not included in the promoter fragments
that we have studied. These data establish that the region spanning
sequences
440 to
470 of the vWf promoter interacted with a
protein(s).
-negative
regulatory region of the vWf promoter. The DNA probe fragment
corresponding to the
550 to
320 nucleotide sequences of the vWf
gene was generated by PCR. Primers used were a 5
end-labeled primer
that corresponded to sequences
320 to
350, and an unlabeled primer
that corresponded to nucleotide sequences
500 to
550. The DNA probe
(10,000 cpm) was incubated with nuclear extract (30 µg) from BAE
cells for 15 min on ice and digested with DNase1 enzyme: 0, lane
1; 10, lane 3; 20, lane 4; and 50, lane 5 units/ml. Lane 2 shows results with the
probe digested with 10 units/ml DNase1 in the absence of nuclear
extract. Lanes A, C, G, and T are the sequence
ladder of the same labeled DNA probe. The sequence to the
right of lane 5 represents the nucleotides of the
protected fragment.
To determine whether the observed footprint was the result of a
specific protein-DNA complex formation, we carried out gel mobility
experiments using a double-stranded oligonucleotide corresponding to
sequences
440 to
470. The oligonucleotide was labeled with
[32P]ATP (using the 5
end labeling technique) and
incubated with the nuclear extract from BAE cells. DNA-nuclear extract
complexes were analyzed by gel electrophoresis in a 5% nondenaturing
polyacrylamide gel. The results demonstrated that the oligonucleotide
corresponding to sequences
440 to
470 interacted with a nuclear
factor(s) (Fig. 2). This complex was shown to be
specifically abolished by the presence of a specific competitor (an
excess of unlabeled oligonucleotides corresponding to the same region).
Nonspecific competitors (an excess of unlabeled oligonucleotides
corresponding to the sequences
320 to
350 in the negative region)
did not abolish the formation of this complex (Fig. 2).
Oligonucleotides corresponding to other sequences of the 200 bp of the
negative regulatory region did not form a specific complex when used as
probes in gel mobility experiments (data not shown). These results were
consistent with the hypothesis that a cis-acting element in the
negative regulatory region interacts with a possible ``repressor''
protein. They also indicated that this element was located in the
region spanning nucleotides
470 to
440 of the vWf promoter.
end-labeled oligonucleotide probes (8000 cpm). Probes
corresponded to sequences
320 to
350 (probe P, left three
lanes), and sequences
440 to
470 (probe V, right three
lanes) of the vWf negative regulatory region. The arrow
shows the position of the specific complex. The free probes are shown
at the bottom of the gel. The competitors were a 100-fold
excess of unlabeled oligonucleotides (P(
350 to
320) or V(
470 to
440)). The incubation reactions were carried out as described under
``Materials and Methods,'' and samples were analyzed on a 5%
nondenaturing polyacrylamide gel.
Mutations in the DNA Sequence Spanning Nucleotides
440 to
470
of the Negative Regulatory Region of the vWf Promoter Abolish the
Formation of the DNA-Protein Complex
To determine the exact DNA
sequences in the
440 to
470 region that were involved in formation
of the DNA-protein complex, we carried out mutation analysis of this
region. A total of 10 double-stranded oligonucleotides were
synthesized, each containing three different bp substitutions, and were
used either as probes or competitors in gel mobility experiments.
Results of these analyses (4 of the 10 mutations shown) indicated that
none of the mutants were able to form the specific complex with the BAE
nuclear extract or compete for formation of the specific DNA-protein
complex when the wild type oligonucleotide was used as the probe (Fig.
3). The lower complexes observed with all these mutants
were nonspecific.
end-labeled probes and BAE nuclear extracts as described in legend to
Fig. 2. A, sequences of the wild type and each of four
mutant oligonucleotides are shown. The 3-bp substitutions in each
mutant oligonucleotide are indicated by bold letters. B, the
probe (V) used in all samples is the wild type oligonucleotide spanning
sequences in the region
470 to
440. The competitors used were a
100-fold excess of unlabeled oligonucleotides, corresponding to
440
to
470 (V),
320 to
350 (N), and the mutant
440 to
470
oligonucleotides (m1, m2, m3 and m4, respectively) (shown in
A). C, the gel mobility experiment was carried
out with wild type (V), and each mutant oligonucleotide (m1, m2, m3,
and m4) was used as probes. The arrow shows the position of
the specific complex.
A nonspecific complex migrating to the same position was also observed
with wild type probe. The higher intensity of this nonspecific complex
in the mutant probe may have been attributable to a greater
availability of the labeled probe, since it was not specifically bound
to NF1. An additional complex was also observed with the mutant m1 that
migrated faster than the NF1-DNA complex. Since this complex was only
observed with m1 mutant, we believe it to be the consequence of the
specific base changes in this oligonucleotide that generated a protein
binding site that was nonspecific. That this added band does not
represent binding of an authentic factor specifically to vWf sequences
in the absence of repressor protein is concluded because we did not
observe the same complex in any of the other mutants m2, m3, or m4.
Base changes corresponding to the m1 mutation were not used to generate
vWf promoter fragments containing mutation in the repressor binding
site. These mutation analyses establish that the entire intact
470 to
440 sequence was necessary for binding of the newly identified
protein(s) to this region.
440 to
470 of
the vWf Promoter Interacts with an NF1-like Protein
To determine
the identity of the protein(s) that interacted with the
440- to
470-bp region, we analyzed the nucleotide sequences in this region
and identified a DNA sequence that had homology with the binding site
for the NF1 (29). The consensus NF1 binding site and the corresponding
sequences in the
440- to
470-bp region of the vWf promoter are
shown in Fig. 3A. Gel mobility experiments were next carried
out with BAE nuclear extracts using the vWf
440- to
470-bp
oligonucleotide (V) as a probe. An oligonucleotide that corresponded to
NF1-binding sequences of the adenovirus origin of replication (A) (23,
29) was used as a competitor. Formation of a DNA-protein complex with
the probe V was abolished in the presence of a 100 × molar excess
of the unlabeled adenovirus NF1 binding oligonucleotide designated as
``A'' (Fig. 4A, lane 4). An adenovirus
oligonucleotide that contained a mutation in the NF1 binding site (mA)
did not abolish the formation of this complex (Fig. 4A, lane
5). When the adenovirus NF1 binding oligonucleotide (A) was used
as a probe, the specific NF1-DNA complex that formed migrated to the
same position as that observed with vWf sequences (Fig. 4A,
compare lanes 1 and 6). Furthermore, addition of
a 100 × molar excess of unlabeled
440 to
470 oligonucleotide
(V) as a competitor abolished the formation of the specific NF1-DNA
complex (Fig. 4A, lane 9, and Fig. 4B, lane 2).
Addition of a 100 × molar excess of unlabeled vWf oligonucleotide
(m3) that contained the mutation in the NF1 binding site did not
abolish the formation of this complex (Fig. 4B, lane 3).
These results establish that the protein(s) interacting with sequences
440 to
470 of the negative regulatory region of the vWf promoter
include an NF1-like protein.
440 to
470 to that of the adenovirus NF1 binding site. Gel mobility
assays were carried out as described in the legend to Fig. 2. The probe
(V) used in lanes 1-5 (A) was the wild type
oligonucleotide corresponding to sequences
470 to
440. The probe
(A) used in lanes 6-9 (A) and lanes 1-3
(B) was a 30-bp oligonucleotide that corresponded to
the NF1 binding site in the adenovirus origin of replication.
Competitors were a 100-fold excess of unlabeled wild type
oligonucleotides (same as probes V and A) and oligonucleotides
corresponding to the same sequences as V and A but containing mutations
in the NF1 binding sites (mV) and (mA), respectively. The
arrow shows the position of the specific NF1-DNA
complex.
An NF1-like Protein Functions as a Repressor of vWf Transcription in Endothelial Cells
Mutation analyses and transfection studies
were next carried out to determine whether the NF1-like factor that
interacted with the sequences
440 to
470 functioned as a repressor
of vWf promoter activity. Constructs of the vWf promoter containing
triple base substitutions in this region were fused to the growth
hormone structural gene (used as a reporter gene) for these analyses.
The triple base substitutions were the same as that in oligonucleotide
m3, which was shown to inhibit the DNA-protein interaction in gel
mobility experiments (Fig. 3). We incorporated this mutation in the
context of the promoter that included the core region and the negative
regulatory region (sequences
487 to +155) to generate plasmid
HGH-Brm3 (Fig. 5A). The plasmid containing
the wild type sequences was designated HGH-B (22). Each of the plasmids
was transfected into BAE cells, and the promoter activity of the
mutated vWf sequences (HGH-Brm3) was compared with that of the wild
type (HGH-B) and to that of the plasmid containing only the core
promoter region (HGH-1).
487 to +155 in
transfected BAE cells. Plasmids (25) containing wild type and
mutant
487 to +155 fragments of the vWf gene were fused to the human
growth hormone reporter gene (HGH-B and HGH-Brm3). These
were transfected into BAE cells. The plasmid HGH-1 that contained core
promoter sequences
90 to +155 was transfected as a positive control.
A, schematic representation of each of the plasmids are
shown on the left. The line represents the vWf
sequences, and the open box represents the human growth
hormone structural gene (HGH). The solid triangle
represents the mutation in the NF1 binding site. The quantity of growth
hormone secreted was determined using a human growth hormone
radioimmunoassay as described under ``Materials and Methods.'' The
bar graph on the right indicates the relative
activity expressed as percentage of the level of secreted growth
hormone produced by the HGH-1 plasmid (approximately 50-80 ng/ml
growth hormone) in each set of transfection experiments. The results
shown are the averages of results for four separate transfection
experiments with each plasmid. B, BAE cells were
cotransfected with the plasmid
SVHP
WT (containing the human
-globin gene) and the vWf-HGH plasmids described in A.
RNA was extracted from cotransfected cells, and vWf- and
globin-specific antisense RNA probes were used to detect each message.
RNase protection assays of the protected fragments were carried out on
6% polyacrylamide gels as described under ``Materials and Methods.''
The upper panel shows the autoradiograph of the vWf
antisense RNA probe hybridized to RNA (25 µg) from cells transfected
with HGH-1, lane 1; HGH-B, lane B; and
HGH-Brm3, lane Brm3. Human umbilical
cord vein endothelial cell RNA (5 µg) (lane EC) was used
as a positive control marker that indicated the protection of 155 bp of
the endogenous vWf RNA. Hybridization of RNA from cells transfected
with each vWf-HGH plasmid that contained up to +155 sequences of the
vWf gene resulted in the protection of a fragment that was 20 bp longer
(22). The lower panel represents the protected globin
message when 10 µg of the same RNA from each co-transfection was
hybridized to 100,000 cpm of the antisense globin-specific probe. As
previously reported (22), two protected globin bands were detected when
plasmid
SVHP
WT was expressed in cells of bovine origin.
The results of growth hormone production assays indicated that the promoter activity of the mutant HGH-Brm3 was similar to that of HGH-1 (Fig. 5A). The negative regulatory region of the unaltered vWf promoter inhibited the activity of the core promoter (Fig. 5, compare HGH-1 and HGH-B). These results indicated that the mutation in the NF1 binding sequence abolished its inhibitory effect in the negative regulatory region of the vWf gene promoter in BAE cells.
Previous results showed that the basal level of growth hormone
expressed from the plasmid HGH-B was not due to vWf promoter sequences
(22). The vWf promoter fragments used in generation of these plasmids
included the vWf transcription initiation site and 155 bp of the first
exon that codes for the 5
-untranslated region. Thus, an antisense
vWf-specific RNA probe was used to detect the vWf portion of the
chimeric transcripts and to identify the transcripts that initiate from
the correct start site (+1) in the vWf fragment. RNase protection
analysis demonstrated the absence of detectable vWf transcript from the
HGH-B plasmid (Fig. 5B).
To confirm that the increase in the level of growth hormone expression
in plasmid HGH-Brm3 correlated with an increase in transcription from
the correct initiation site, similar RNase protection analyses were
carried out with this plasmid. As a control for transfection
efficiency, plasmid
SVHP
WT (25) containing the human globin gene
was cotransfected with each of the vWf-HGH plasmids. Results of the
RNase protection experiments confirmed that there was no detectable vWf
transcript from plasmid HGH-B, whereas the vWf transcript was detected
from plasmid HGH-Brm3 (Fig. 5B).
These results demonstrated that mutation in sequences
470 to
440 of
the vWf promoter inhibited protein-DNA complex formation and also
abolished the inhibitory effect of the negative regulatory region
restoring transcription. The data establish that the NF1-like protein
that interacts with sequences
470 to
440 bp functions as a
repressor of vWf transcription in endothelial cells.
The negative regulatory region of the vWf
promoter was shown to have an inhibitory function in both vWf
expressing and nonexpressing cell types. To determine whether the same
repressor was present in nonendothelial cells, nuclear extracts were
made from BSM cells and used in gel mobility experiments with the
radioactively labeled oligonucleotide
470 to
440. The results of
this analysis (Fig. 6) indicated that the BSM nuclear
extract formed a specific complex with the DNA probe which migrated in
the same position as the complex formed with the BAE nuclear extract.
The formation of this complex was also abolished in the presence of a
specific competitor, whereas the nonspecific competitor had no effect
(Fig. 6). These results were consistent with the hypothesis that a
repressor protein (identified as an NF1-like protein in BAE cells) was
present in both vWf expressing and nonexpressing cell types and
interacted with the negative regulatory region.
470 to
440.
The sc (specific competitor) was a 100-fold excess of
unlabeled oligonucleotide (same as the probe). The nc
(nonspecific competitor) was a 100-fold excess of unlabeled
oligonucleotide corresponding to sequences
350 to
320. The
arrow shows the position of the specific complex.
To determine whether a mutation in the NF1 binding site also abolished
the repression of the promoter activity in nonendothelial cells,
transfection experiments were next carried out in bovine smooth muscle
cells. When plasmids HGH-B and HGH-Brm3 were transfected into BSM
cells, similar results to those observed in endothelial cells were
obtained (Fig. 7). The level of growth hormone
expression from plasmid HGH-B was reduced compared with that of HGH-1,
whereas the level of expression from plasmid HGH-Brm3 was comparable
with that of HGH-1 (Fig. 7). These results establish that the NF1-like
protein functions as a repressor of vWf transcription in nonendothelial
cells as well as endothelial cells.
487 to +155 in
transfected BSM cells. Plasmids (25 µg) of HGH-1, HGH-B, and
HGH-Brm3 (as described in the legend to Fig. 5) were transfected into
BSM cells, and growth hormone expression was quantitated (as described
in the legend to Fig. 5A).
Mutation of the NF1 Binding Site Is Not Sufficient to Override Endothelial Cell-type-specific Activity of Sequences
487 to +247 of
the vWf Promoter
Sequences spanning nucleotides +155 to +247 in
the 3
-terminal region of the first exon of the vWf promoter have been
reported to abolish the inhibitory effect of the negative regulatory
region only in endothelial cells (22). To determine whether the
endothelial cell-specific activity of sequences
487 to +247 bp of the
vWf promoter was dependent only on binding of the NF1-like protein to
the negative regulatory region, we next tested the effect of the same
3-bp substitutions when incorporated into the context of the larger
promoter fragment
487 to +247 to generate plasmid HGH-Krm3 (this
construct is the same as wild type plasmid HGH-K except for the 3-bp
substitution). The activities of the mutated and wild type plasmids
were then analyzed in transfected BAE and BSM cells. The results (Fig.
8) demonstrated that both plasmids facilitated a similar
level of growth hormone expression in BAE cells. This result was
consistent with the hypothesis that the positive regulatory region
overcomes the effect of the repressor in BAE cells. Thus, mutation of
the NF1 binding site had no additional effect. However in BSM cells,
both mutated and wild type plasmids behaved similarly, and there was no
increased activity as a result of mutation in the NF1 binding site
(Fig. 8).
487 to +247 in
transfected BAE and BSM cells. Plasmids (25 µg) containing wild
type and mutant fragments
487 to +247 of the vWf gene, fused to the
human growth hormone reporter gene (HGH-K and HGH-Krm3),
were each transfected into BAE or BSM cells. The plasmid HGH-1 was
transfected as positive control. A, schematic
representations of the plasmids are shown. The line
represents the vWf sequences, and the open box represents
the human growth hormone structural gene (HGH). The
solid triangle represents the sites of mutation in the NF1
binding site. Growth hormone analyses were carried out as described in
the legend to Fig. 5A.
The present results indicate that inhibition of the repressor function
of the NF1 protein was not sufficient to abolish cell-type-specific
activity of sequences
478 to +247 (a larger fragment) of the vWf
promoter. Other DNA cis-acting elements (in addition to the NF1 binding
site) within the vWf promoter region must also be able to repress
promoter activity in nonendothelial cells. The presence of sequences
+155 to +247 bp was the only difference between the active HGH-Brm3 and
inactive HGH-Krm3. Thus, comparison of the activity of these two
plasmids (both containing the NF1 binding site mutation) in BSM cells
indicated that other repressor element(s) may be located in the
sequences spanning +155 to +247 bp of the vWf gene.
We have previously demonstrated that the region of the vWf
promoter spanning nucleotides
487 to +247 functions in an endothelial
cell-specific manner. This region was shown to consist of a core
promoter, a negative regulatory region, and a positive regulatory
region. The core promoter that constitutes nucleotides
90 to +22 bp
was shown to drive the expression of a heterologous human growth
hormone gene in all cell types studied. Addition of sequences upstream
of nucleotide
90 that spanned the region
312 to
487 bp was shown
to inhibit core promoter activity in all cell types studied. Sequences
corresponding to nucleotides +155 to +247 of the first exon were shown
to counteract the inhibitory effect of the negative region in an
endothelial cell-specific manner.
We have demonstrated the presence of several cis-acting elements, including an SP1, an octamer, and a GATA binding site in the +155 to +247 positive regulatory region. Among these only the GATA binding sequence was necessary for promoter activity in endothelial cells. Mutation of the GATA binding site inhibited the interaction of a GATA protein with its cognate cis-acting element and abolished promoter activity in endothelial cells (22).
Our present data demonstrate that the inhibitory function of the
upstream negative regulatory region of the vWf promoter was mediated
through the interaction of an NF1-like protein with nucleotides
spanning sequences
440 to
470. Three-bp substitutions that
inhibited the interaction of the NF1-like protein with these sequences
abolished the repressor function of the negative regulatory region. The
NF1 protein was originally characterized as a 47-kDa protein that
interacted with sequences at adenovirus origin of replication and was
necessary for viral DNA replication (23, 29). However, DNA sequences
that comprise the negative regulatory region of a number of genes
including human retinal binding protein (30), chicken
-globin (31),
mouse Ren-1d (32), Sparc (33), collagen (34), and rat growth hormone
(19) are reported to have homology to the NF1 binding sequence.
Proteins that recognize NF1 binding sequences are part of a family of
proteins and are designated ``NF1-like proteins'' (19). In addition,
other proteins such as C/EBP (35, 36), CP1, and CP2 (37) and a subset
of modified histone H1 (38) also can interact with the NF1 binding DNA
sequences.
To our knowledge there are no antibodies available that recognize NF1
proteins. Thus, we were not able to directly demonstrate by supershift
that the specific protein that interacts with sequences
470 to
440
is the previously reported NF1 protein. However, the binding
characteristics of our identified protein were similar to members of
the NF1 family. The DNase1 footprint analyses demonstrated the
protection of an approximately 24-nucleotide region, and mutation
analyses demonstrated that the entire 30 nucleotides in the
440 to
470 region were necessary for DNA-protein interaction. These results
were consistent with previously reported characteristics of the NF1-DNA
interaction (23). Furthermore, gel mobility experiments demonstrated
competition of vWf sequences for the protein that binds adenovirus NF1
binding sequences, indicating that the protein(s) recognizing
adenovirus NF1 binding site and the vWf sequences are members of the
NF1-like protein family.
A direct role for an NF1-like protein as a repressor has been previously reported (19). A 52-kDa protein member of this family was shown to function as a repressor of rat growth hormone promoter in nonpituitary cells (19). This result demonstrated that an NF1-like protein functioned as a repressor that was involved in cell-type-specific gene regulation. Our results establish that an NF1-like protein also functioned as a repressor of the vWf promoter, but it inhibited the vWf promoter activity in both endothelial and nonendothelial cell types.
There are several possible mechanisms that might describe how a repressor functions (15, 16). A repressor may inhibit promoter activity by interfering with the function of an adjacent activator. This inhibition may be achieved either through protein interaction when both activator and repressor are bound to DNA or through repressor binding to the DNA which may mask the binding site of an activator. In each of these mechanisms, the repressor interferes with the function of an activator that is required to interact with general transcription machinery to initiate transcription. Another mechanism by which a repressor might function is proposed to be through direct interaction with the components of general transcription machinery, thereby preventing transcription.
Although we do not have direct evidence to demonstrate which
mechanism is involved in repression of the vWf promoter by NF1, our
results favor a mechanism that involves direct repression. We reasoned
that if there was an activator adjacent to the NF1 binding site, which
was necessary for transcription, deletion of sequences from
487 to
90 bp should have abolished promoter activity. Such a deletion would
have been expected to have removed both the NF1 and the putative
activator binding sites. The observed transcriptional activity of the
plasmid HGH-1 that did not include sequences
487 to
90 indicated to
us that removal of these sequences did not abolish transcription. We
cannot rule out that an activator(s) may bind to sequences downstream
of the
90 nucleotide and that its function could have been inhibited
by the NF1 repressor.
Although it was clearly demonstrated that the NF1-like protein
functioned as a repressor of the vWf promoter, mutation of the NF1
binding site in the context of the larger endothelial cell-specific vWf
promoter fragment (
487 to +247) did not result in promoter activation
in bovine smooth muscle cells. The same mutation in the context of the
promoter that included the smaller core and negative regulatory region
(
487 to +155) resulted in promoter activity in smooth muscle cells.
These results suggested that sequences spanning nucleotide +155 to +247
of the vWf promoter inhibit promoter activity in nonendothelial cells
even when the NF1 binding site is mutated. Thus, another repressor may
interact with sequences in this region and inhibit expression in
nonendothelial cells. Since this same +155 to +247 region positively
activated vWf expression in endothelial cells, we hypothesize that a
second repressor functions in a cell-type-specific manner and represses
vWf promoter activity only in nonendothelial cells. However, this
hypothesis does not exclude the possibility that this repressor may
also be present in endothelial cells with its function inhibited
(similar to that of NF1) by positively activating factors such as GATA
factor (and perhaps another as yet unidentified factor) in endothelial
cells.
The results of our deletion and mutation analyses of the vWf promoter
are summarized in Fig. 9. We propose a model to explain
the endothelial cell-type-specific regulation of the vWf gene, through
a mechanism involving selective ``de-repression'' (Fig. 9). Such a
mechanism involves the presence of factors that override the repressor
function of the NF1-like protein (and perhaps the second downstream
repressor) on the vWf promoter in endothelial cells. The observation
that a positive regulatory region is necessary for activation of the
vWf promoter in endothelial cells suggested that trans-acting factors
may interact with this region and play a role in de-repression. We have
already demonstrated that mutation of the GATA binding site abolishes
the promoter activity of sequences
487 to +247 in endothelial cells.
Thus, the GATA factor (shown as G in Fig. 9B) and
perhaps other as yet unidentified factors (represented as A?
in Fig. 9) that interact with sequences +155 to +247 may function as
de-repressors. The observation in smooth muscle cells that the
sequences +155 to +247 inhibited the promoter activation even in
absence of NF1 binding (as shown by lack of expression of plasmid
HGH-Krm3 in BSMC, Fig. 8) suggests that this second repressor may also
directly inhibit transcription rather than interfere with the
de-repression function of an activator. Thus, the presence of two
independent repressors may be responsible for preventing the expression
of the vWf gene in cells that are not of endothelial origin.
flanking region.
The open box represents the first exon with transcription
initiation at nucleotide +1 shown by the arrow. T
and C represent TATA and CAAT boxes, respectively. NF1-like
protein and GATA transcription factors are represented as
NF1 and G, respectively. The R?
represents a potential repressor that functions only in nonendothelial
cells. The A? (bottom left figure) represents a
hypothetical activator that may function in endothelial cells. The
various vWf promoter fragments that were used to generate vWf-HGH
plasmids (HGH-1, HGH-B, HGH-Brm3, HGH-K and HGH-Krm3) are
shown in the middle section. The open triangle
represents the mutation in NF1 binding site. The expression pattern of
each plasmid in BAE and BSM cells is a summary of our data on the
promoter activity of the vWf fragments driving the growth hormone gene
expression. The plus represents expression, and the
minus represents the lack of expression of each plasmid in
each cell type. The vWf promoter in its inactive state is represented
above the two directional arrows at the
bottom of the figure. The X through the arrow
represents the lack of transcription as a result of NF1 binding. In
endothelial cells (lower left) the binding of GATA (shown as
G) and perhaps other positive activating factors (as yet
unknown, are represented by A?) may block the repressor
function of NF1 (and possibly the other repressors), thus allowing
transcription. In nonendothelial cells (bottom right), NF1
and a secondary repressor (represented by R?) may inactivate
transcription.
Studies with transgenic mice expressing the endothelial cell-specific
vWf promoter have demonstrated that the sequences
487 to +247 of the
vWf promoter function in an organ-specific manner (39). In mouse
embryos this promoter was active in the endothelial cells of most of
the embryonic vasculature, whereas in adult mice its activity was
restricted to a subset of brain endothelial cells (39). It has been
demonstrated that endothelial cells are heterogeneous in
vivo, and those of different organs express different molecules.
Most endothelial cells do express vWf (6). Thus, the organ-specific
activity of the
487 to +247 region suggests that there are other
cis-acting elements that are necessary to activate the vWf promoter in
endothelial cells of other organs in vivo. This
organ-specific behavior of the vWf promoter may be modulated through
the NF1-like protein. Selective de-repression of the vWf promoter may
be extended to include cis-acting elements in other regions of the gene
that are required to overcome NF1 repression in endothelial cells of
various organs, whereas elements in the terminal region of the first
exon are sufficient to override the repression in endothelial cells of
the brain vasculature. A secondary repressor of the vWf promoter in the
+155 to +247 region may function to maintain repression of vWf
transcription in cells of nonendothelial origin.
To whom correspondence should be addressed. Tel.: 412-624-0314;
Fax: 412-624-0295.
-bis(2-ethanesulfonic acid.
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