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Volume 271, Number 35,
Issue of August 30, 1996
pp. 21645-21651
©1996 by The American Society for Biochemistry and Molecular Biology, Inc.
The UL8 Subunit of the Herpes Simplex Virus Type-1 DNA
Helicase-Primase Optimizes Utilization of DNA Templates Covered by the
Homologous Single-strand DNA-binding Protein ICP8*
(Received for publication, May 6, 1996, and in revised form, June 25, 1996)
Nicolas Tanguy Le
Gac
,
Giuseppe
Villani
,
Jean-Sébastien
Hoffmann
and
Paul E.
Boehmer
§¶
From the § Department of Microbiology and Molecular
Genetics, University of Medicine and Dentistry of New Jersey, New
Jersey Medical School, Newark, New Jersey 07103 and the
Institut de Pharmacologie et de Biologie Structurale,
CNRS, 205 Route de Narbonne, 31077 Toulouse Cédex, France
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
FOOTNOTES
Acknowledgment
REFERENCES
ABSTRACT
The herpes simplex virus type-1 DNA
helicase-primase is a heterotrimer encoded by the UL5,
UL8, and UL52 genes. The core enzyme, specified
by the UL5 and UL52 genes, retains DNA
helicase, DNA-dependent nucleoside triphosphatase, and
primase activities. The UL8 subunit has previously been implicated in
increasing primer stability and in stimulating primer synthesis by the
core enzyme. To further characterize the function of the UL8 subunit,
we have examined its effect on the activities of the UL5/52 core enzyme
using DNA templates covered by the herpes simplex virus type-1
single-strand DNA-binding protein ICP8. We found that while ICP8
stimulated the DNA helicase activity of the UL5/52 proteins up to
3-fold, maximum stimulation by ICP8 required the presence of UL8
protein. Moreover, UL8 protein was required to reverse the inhibitory
effect of ICP8 on the DNA-dependent ATPase and primase
activities of the UL5/52 proteins. These observations were specific for
ICP8 since the heterologous Escherichia coli single-strand
DNA-binding protein could not substitute for ICP8. These data suggest
that UL8 protein mediates an interaction between the UL5/52 core enzyme
and ICP8 that optimizes the utilization of ICP8-covered DNA templates
during DNA replication.
INTRODUCTION
Herpes simplex virus type-1 (HSV-1)1
is a double-strand DNA virus with a genome of ~152 kilobase pairs and
three origins of DNA replication (Challberg, 1991 ). Replication of
origin-containing plasmids requires the action of seven viral gene
products (Stow, 1992 ; Wu et al., 1988 ). These seven gene
products comprise a highly processive heterodimeric DNA polymerase
(UL30/UL42 genes), a heterotrimeric DNA helicase-primase
(UL5/UL8/UL52 genes), a single-strand DNA-binding protein
(SSB) (UL29 gene), and an origin-binding protein
(UL9 gene) (reviewed by Challberg (1991) ).
HSV-1 SSB, henceforth referred to as ICP8 ( nfected
ell olypeptide ), is a
128-kDa zinc metalloprotein (Gupte et al., 1991 ). It is a
functional homologue of Escherichia coli SSB (E-SSB) (Lohman
and Ferrari, 1994 ), capable of binding to single-strand DNA
cooperatively and with high affinity (Lee and Knipe, 1985 ; Ruyechan,
1983 ). The DNA-binding site size for ICP8 is based on indirect
measurements. Estimates based on the ratios of ICP8 required for
stimulation of the HSV-1 DNA polymerase, strand displacement activity,
and nuclease protection fall in the range of one ICP8 to 12-22
nucleotides (Boehmer and Lehman, 1993b ; Hernandez and Lehman, 1990 ;
O'Donnell et al., 1987 ). They are consistent with a site
size of 15-18 nucleotides estimated by electron microscopy (Makhov
et al., 1996 ). In addition to its role as an SSB, ICP8
participates in multiple protein-protein interactions that are probably
significant during viral DNA replication (Boehmer and Lehman, 1993a ;
Boehmer et al., 1994 ; Chiou et al., 1985 ;
Hernandez and Lehman, 1990 ; Liptak et al., 1996 ; Lukonis and
Weller, 1996 ; Thomas et al., 1992 ; Vaughan et
al., 1985 ).
The HSV-1 DNA helicase-primase is thought to be responsible for DNA
unwinding and priming of Okazaki fragments at the DNA replication fork
(Crute et al., 1989 ). The core enzyme consists of the 99-kDa
UL5 and 114-kDa UL52 gene products and possesses 5 3 DNA
helicase, DNA-dependent nucleoside triphosphatase, and
primase activities (Calder and Stow, 1990 ; Dodson and Lehman, 1991 ).
The primase activity exhibits sequence preference, with the predominant
template site in X174 DNA being 3 -AG CCTCCCA, with
primer synthesis initiating at the underlined C residue (Tenney
et al., 1995 ). The 80-kDa UL8 gene product lacks detectable
enzymatic and DNA binding activities (Dodson and Lehman, 1991 ; Parry
et al., 1993 ), but has been reported to stimulate primer
synthesis by the UL5/52 core enzyme (Tenney et al., 1994 ).
In addition, it has been proposed that UL8 protein increases
utilization of primers synthesized by the UL5/52 proteins (Sherman
et al., 1992 ).
This work is a further investigation into the role of the UL8 subunit.
We have examined the effects of UL8 protein on the activities of the
UL5/52 proteins in the presence of ICP8. Our results show that UL8
protein is required for optimal DNA helicase, DNA-dependent
ATPase, and primase activities in the presence of ICP8. Consequently,
we propose that UL8 protein mediates an interaction between ICP8 and
the UL5/52 proteins, increasing the utilization of ICP8-covered DNA
templates.
EXPERIMENTAL PROCEDURES
Materials
Phosphoenolpyruvate (potassium salt) and NADH
were purchased from Sigma. [ -32P]ATP
(3000 Ci/mmol) and [ -32P]dATP (3000 Ci/mmol) were
purchased from DuPont NEN and Amersham Corp., respectively.
Deoxyribonucleotides and ribonucleotides (ultrapure) with the exception
of ATP were from Pharmacia Biotech Inc. ATP (lithium salt), leupeptin,
pepstatin, and phenylmethanesulfonyl fluoride were obtained from
Boehringer Mannheim.
Proteins
T4 polynucleotide kinase was purchased from New
England Biolabs Inc. E. coli SSB was obtained from both
Pharmacia Biotech Inc. and U. S. Biochemical Corp. Sequenase Version
2.0 and bovine serum albumin (DNase-free) were purchased from U. S.
Biochemical Corp. and Pharmacia Biotech Inc., respectively. Rabbit
muscle lactate dehydrogenase and pyruvate kinase, as solutions in 50%
glycerol, were obtained from Sigma. Standards for
SDS-polyacrylamide gel electrophoresis were obtained from Bio-Rad.
ICP8, UL8 protein, and the UL5/52 core enzyme were purified from total
cell extracts of Spodoptera frugiperda Sf21 cells infected
with Autographa californica nuclear polyhedrosis virus
recombinant for the HSV-1 UL29, UL8, and
UL5/UL52 genes, respectively (Dodson et al.,
1989 ; Stow, 1992 ).
Stocks of recombinant A. californica nuclear polyhedrosis
virus were prepared in S. frugiperda Sf9 cells as described
(Skaliter and Lehman, 1994 ). Sf21 cells were propagated and infected as
described (Skaliter and Lehman, 1994 ). 48 h (UL8 protein and
UL5/52 proteins) or 60 h (ICP8) post-infection, cells were
harvested, washed in phosphate-buffered saline, and frozen at
80 °C. All subsequent manipulations were performed on ice or at
4 °C in buffers containing 0.5 µg/ml leupeptin, 0.7 µg/ml
pepstatin, and 0.1 m phenylmethanesulfonyl fluoride. The
cells were resuspended in buffer A (10 m Tris-HCl, pH 8.0, 10 m KCl, and 1.5 m MgCl2) and
allowed to swell for 20 min. The cells were lysed with 10 strokes of a
tight-fitting pestle (A), and NaCl was added to 1.2 .
After a 30-min extraction, the debris was pelleted by centrifugation at
35,000 rpm for 60 min in a Beckman type 42.1 rotor. Supernatants were
dialyzed twice against 2 liters of buffer B (20 m
HEPES/NaOH, pH 7.6, 1 m dithiothreitol, 10% glycerol, and
0.1 m EDTA) containing 0.1 (ICP8), 50 m (UL8 protein), or 60 m (UL5/52 proteins)
NaCl to give fraction I.
All chromatography steps were performed using a Pharmacia FPLC system
at a flow rate of 0.5 ml/min. ICP8 was purified as described previously
(Boehmer and Lehman, 1993a ). At each stage during the purification of
UL8 protein and the UL5/52 core enzyme, chromatography fractions were
assayed by SDS-polyacrylamide gel electrophoresis followed by Coomassie
Blue staining and by immunoblotting using rabbit sera raised against
UL8 protein and the UL5/52 core enzyme (courtesy of I. R. Lehman,
Stanford University). Final purity was assessed by densitometric
scanning of Coomassie Blue-stained SDS-polyacrylamide gels.
UL8 protein fraction I was loaded onto a 5-ml Econo-Pac HTP cartridge
(Bio-Rad) equilibrated with buffer C (50 m imidazole HCl,
pH 7.0, 1 m dithiothreitol, 10% glycerol, and 50 m NaCl). The column was washed; proteins were eluted with
a 50-ml linear gradient of ammonium sulfate (0-390 m) in
buffer C; and 1-ml fractions were collected. Fractions 7-16,
containing the peak of UL8 protein, eluting at ~75 m
ammonium sulfate, were pooled and dialyzed against 2 liters of buffer D
(20 m Tris-HCl, pH 7.5, 1 m dithiothreitol,
10% glycerol, and 0.1 m EDTA) containing 50 m NaCl to give fraction II. Fraction II was applied to a
Mono Q HR 5/5 column (Pharmacia Biotech Inc.) equilibrated with buffer
D containing 50 m NaCl. The column was washed, and
proteins were eluted with a 10-ml linear gradient of NaCl (0.05-0.5
) in buffer D. Fractions (0.25 ml) containing near
homogeneous (>95% pure) UL8 protein, eluting at ~0.3
NaCl, were divided into aliquots, frozen in liquid nitrogen, and stored
at 80 °C. The yield of purified UL8 protein was ~3.5 mg from
2.5 g of cell paste.
UL5/52 proteins fraction I was loaded onto a 5-ml HiTrap heparin column
(Pharmacia Biotech Inc.) equilibrated with buffer B containing 60 m NaCl. The column was washed; proteins were eluted with a
50-ml linear gradient of NaCl (60-600 m) in buffer B; and
1-ml fractions were collected. Fractions 13-28, containing the bulk of
UL5/52 proteins, were pooled (fraction II) and applied directly to a
5-ml Econo-Pac HTP cartridge equilibrated with buffer E (10 m sodium phosphate, pH 7.0, 1 m
dithiothreitol, 10% glycerol, and 0.1 NaCl). The column
was washed; proteins were eluted with a 50-ml linear gradient of sodium
phosphate (0.01-0.2 ) in buffer E; and 1-ml fractions
were collected. The column flow-through fraction and fractions 1-12,
containing the majority of UL5/52 proteins, were pooled and dialyzed
against 2 liters of buffer D containing 50 m NaCl to give
fraction III. Fraction III was applied to a Mono Q HR 5/5 column
equilibrated with buffer D containing 50 m NaCl. The
column was washed, and proteins were eluted with a 10-ml linear
gradient of NaCl (0.05-0.4 ), followed by a 1 NaCl step, both in buffer D. Fractions (0.25 ml)
containing near homogeneous (>95% pure) UL5/52 proteins, eluting in
the 1 NaCl step, were divided into aliquots, frozen in
liquid nitrogen, and stored at 80 °C. The yield of purified UL5/52
proteins was ~4.5 mg from 7.5 g of cell paste.
Protein concentrations were determined by using extinction coefficients
of 82,720, 130,390, and 171,380 1
cm 1 at 280 nm for ICP8, UL8 protein, and UL5/52 proteins,
respectively. Fig. 1 shows the purified ICP8, UL5/52
proteins, and UL8 protein used in this study. The lower molecular
weight species present in the protein preparations were confirmed as
proteolytic degradation products by immunoblot analysis.
Fig. 1.
SDS-polyacrylamide gel electrophoresis of the
HSV-1 DNA replication proteins used in this study. Proteins were
purified as described under ``Experimental Procedures.'' 9.5, 8.4, and 24.5 pmol of ICP8, UL5/52 proteins, and UL8 protein, respectively,
were resolved by electrophoresis through a 0.1% SDS, 9%
polyacrylamide gel (Sambrook et al., 1989 ), followed by
Coomassie Blue staining. Lanes 1-3, ICP8, UL5/52 proteins,
and UL8 protein, respectively. The positions of molecular weight
standards are indicated. DF, dye front.
[View Larger Version of this Image (45K GIF file)]
DNA Substrates
X174 virion DNA was purchased from U. S.
Biochemical Corp. Random hexamer oligodeoxyribonucleotide primers were
obtained from Life Technologies, Inc. Oligodeoxyribonucleotides were
synthesized on an Applied Biosystems DNA synthesizer and purified by
electrophoresis through denaturing polyacrylamide gels (Sambrook
et al., 1989 ). The sequences of the
oligodeoxyribonucleotides used in this study are shown in Table
I. The 90-mer oligodeoxyribonucleotide was formed by
ligating 14-mer (residues 1-14), 8-mer (residues 15-22), and 68-mer
(residues 23-90) oligodeoxyribonucleotides using a 65-mer
oligodeoxyribonucleotide (complementary to residues 10-74) as a
scaffold. The product was purified by electrophoresis through
denaturing polyacrylamide gels (Sambrook et al., 1989 ). The
DNA helicase substrate was constructed by annealing
5 -32P-labeled 59-mer oligodeoxyribonucleotide (residues
26-59 are complementary to residues 1-34 of the 90-mer
oligodeoxyribonucleotide) to the 90-mer oligodeoxyribonucleotide. This
produced a Y-shaped partial DNA duplex molecule that possesses a
25-nucleotide 5 -32P-tail that serves as a loading site for
the 5 3 translocation of the UL5/52 DNA helicase.
Enzyme Assays
DNA helicase activity was measured by
quantitating the displacement of 5 -32P-labeled 59-mer
oligodeoxyribonucleotide using the Y-shaped DNA substrate. Reactions
(10 µl) were performed at 37 °C in 20 m HEPES/NaOH,
pH 7.5, 1 m dithiothreitol, 10% glycerol, and 4.5 m MgCl2 containing 3 m ATP, 0.1 mg/ml bovine serum albumin, 15 n (molecules) DNA
substrate, a 5-10-fold molar excess of unlabeled 27-mer
oligodeoxyribonucleotide to prevent reannealing of the unwound DNA
strand, and the indicated concentrations of UL5/52 proteins, UL8
protein, ICP8, and E-SSB. In this and subsequent assays, E-SSB was
added to achieve the indicated protein/nucleotide ratios assuming a
site size of 35 nucleotides/tetramer of protein (Lohman and Ferrari,
1994 ). The reactions were terminated by the addition of 3 µl of 100 m EDTA, pH 8.0, 10% SDS, 40% glycerol, and 0.5%
bromphenol blue. The reaction mixtures were resolved by electrophoresis
through nondenaturing polyacrylamide gels, and DNA unwinding was
measured as described previously (Boehmer et al., 1993 ).
The hydrolysis of ATP to ADP and Pi was coupled to the
oxidation of NADH to NAD+ and was measured by a decrease in
the absorbance at 340 nm as a function of time (Boehmer and Emmerson,
1992 ). Reactions (75 µl) were performed at 37 °C in 20 m HEPES/NaOH, pH 7.6, 1 m dithiothreitol,
10% glycerol, and 3.5 m MgCl2 containing 1 m ATP, 200 µ NADH, 1.5 m
phosphoenolpyruvate, 3 units each of lactate dehydrogenase and pyruvate
kinase, 100 n (molecules) oligodeoxyribonucleotide PB-10
as cofactor, 25 n UL5/52 proteins, and the indicated
concentrations of UL8 protein, ICP8, and E-SSB. The data were collected
with a Perkin-Elmer Lambda 2S spectrophotometer using PECSS software
Version 4.2 to calculate rates of ATP hydrolysis.
Primase activity was coupled to the incorporation of
[32P]dATP by Sequenase. Reactions (20 µl) were
performed at 30 °C in 20 m EPPS/NaOH, pH 8.3, 1 m dithiothreitol, 10% glycerol, and 6.5 m
MgCl2 containing 1 m each ATP, CTP, GTP, and
UTP, 40 µ each dCTP, dGTP, and dTTP, 20 µ
[32P]dATP (~3500 µCi/µmol), 0.1 mg/ml bovine serum
albumin, 1 unit of Sequenase, 1.43 n (molecules) X174
virion DNA as template, and the indicated concentrations of UL5/52
proteins, UL8 protein, ICP8, and E-SSB. After 60 min, the reaction
mixtures were spotted onto individual discs of DE81 paper (Whatman),
followed by three 10-min washes in 0.5 sodium phosphate,
pH 7.0, and one wash in 95% ethanol. The DE81 paper discs were dried,
and their radioactivity was determined by scintillation counting.
RESULTS
Effects of ICP8, E-SSB, and UL8 Protein on the DNA Helicase
Activity of the UL5/52 Proteins
Fig. 2 shows the
ability of the UL5/52 proteins to utilize the Y-shaped partial DNA
duplex molecule as a substrate for helicase action. High concentrations
of UL5/52 proteins (>250 n) were required to unwind
>50% of the DNA substrate. In contrast to the DNA primase activity
(Crute and Lehman, 1991 ), the DNA helicase activity of the UL5/52
proteins was observed to be most active at pH 7.0-7.5, with virtually
undetectable levels of activity at pH 8.0-8.6 (data not shown).
Fig. 2.
DNA unwinding of the Y-shaped partial DNA
duplex molecule by the UL5/52 proteins. Reactions were performed
as described under ``Experimental Procedures'' for 60 min with the
indicated concentrations of UL5/52 proteins. A,
autoradiogram of the reaction products. Lane 1, no protein;
lanes 2-7, 12.5, 25, 50, 100, 250, and 500 n
UL5/52 proteins, respectively; lane 8, heat-denatured DNA
substrate. B, quantitation of the data shown in
A.
[View Larger Version of this Image (32K GIF file)]
Fig. 3 shows the effect of ICP8 on the helicase activity
of the UL5/52 proteins. The data indicate that concentrations of ICP8
in excess of those of the UL5/52 proteins (>150 n) could
stimulate the helicase activity of the UL5/52 proteins up to 3-fold
(Fig. 3A). There was no significant DNA unwinding activity
in the presence of ICP8 alone. Fig. 3B shows the stimulatory
effect of ICP8 on the kinetics of DNA unwinding by the UL5/52
proteins.
Fig. 3.
Effect of ICP8 on the helicase activity of
the UL5/52 proteins. Reactions were performed as described under
``Experimental Procedures.'' A, 60-min reactions
containing 150 n UL5/52 proteins and ICP8 as indicated.
Column 1, no protein; column 2, UL5/52 proteins;
column 3, UL5/52 proteins and 100 n ICP8;
column 4, UL5/52 proteins and 150 n ICP8;
column 5, UL5/52 proteins and 300 n ICP8;
column 6, UL5/52 proteins and 450 n ICP8;
columns 7 and 8, 300 and 450 n ICP8
alone, respectively. B, time course of DNA unwinding in
reactions containing 125 n UL5/52 proteins in the absence
( ) or presence ( ) of 300 n ICP8.
[View Larger Version of this Image (19K GIF file)]
Fig. 4 shows the effect of UL8 protein on the helicase
activity of the UL5/52 proteins in the absence or presence of equimolar
(300 n) or excess (450 n) ICP8. Where
indicated, UL8 protein was present at a 3-fold molar excess over the
UL5/52 proteins. This ratio had previously been employed by Tenney
et al. (1994) to examine the effect of UL8 protein on the
primase activity of the UL5/52 proteins. The addition of this level of
UL8 protein had no significant effect on the helicase activity of the
UL5/52 proteins (Fig. 4). Further titration of UL8 protein showed no
effect on DNA unwinding even when present at a 6-fold molar excess over
UL5/52 proteins (data not shown).
Fig. 4.
Effect of UL8 protein on the DNA helicase
activity of the UL5/52 proteins in the absence or presence of
ICP8. Reactions were performed as described under ``Experimental
Procedures'' for 60 min with 300 n UL5/52 proteins, 900 n UL8 protein, and ICP8 as indicated. Column 1,
no protein; column 2, UL5/52 proteins; column 3,
UL5/52 proteins and UL8 protein; column 4, UL5/52 proteins
and 300 n ICP8; column 5, UL5/52 proteins, UL8
protein, and 300 n ICP8; column 6, UL5/52
proteins and 450 n ICP8; column 7, UL5/52
proteins, UL8 protein, and 450 n ICP8.
[View Larger Version of this Image (26K GIF file)]
The addition of UL8 protein to reactions containing UL5/52 proteins and
ICP8 markedly increased the level of stimulation of helicase activity
observed with ICP8 alone (Fig. 4). While ICP8 concentrations of 300 and
450 n increased DNA unwinding 1.6- and 3.6-fold,
respectively, the presence of UL8 protein boosted this stimulation to
3.1- and 8.6-fold, respectively. Increasing the ratio of UL8 protein to
UL5/52 proteins did not significantly modulate the stimulatory effect
observed in the presence of ICP8 (data not shown). Fig.
5 shows the synergistic effect of ICP8 and UL8 protein
on the kinetics of DNA unwinding by the UL5/52 proteins.
Fig. 5.
Effect of UL8 protein on the kinetics of DNA
unwinding by the UL5/52 proteins in the absence or presence of
ICP8. Reactions containing the indicated concentrations of UL5/52
proteins, UL8 protein, and ICP8 were performed as described under
``Experimental Procedures.'' At the times indicated, aliquots were
removed to measure helicase activity. , 300 n UL5/52
proteins; , 300 n UL5/52 proteins and 900 n UL8 protein; , 300 n UL5/52 proteins and
300 n ICP8; , 300 n UL5/52 proteins, 900 n UL8 protein, and 300 n ICP8.
[View Larger Version of this Image (17K GIF file)]
Fig. 6 shows that heterologous E. coli SSB
could not substitute for ICP8 in this synergistic response. The
addition of UL8 protein to reactions containing 300 n ICP8
stimulated DNA unwinding by the UL5/52 proteins from 2.3- to 5.6-fold.
In contrast, equimolar concentrations of E-SSB led to inhibition of DNA
unwinding by the UL5/52 proteins, both in the absence and presence of
UL8 protein. The additive effect of ICP8 and UL8 protein on the
helicase activity of the UL5/52 proteins was also observed using a DNA
substrate in which a 3 -tailed oligodeoxyribonucleotide was annealed to
single-strand M13 DNA (data not shown). The results show representative
data that were reproducibly observed in three independent
experiments.
Fig. 6.
E. coli SSB cannot substitute for ICP8
in the UL8 protein-dependent stimulation of the helicase
activity of the UL5/52 proteins. Reactions were performed as
described under ``Experimental Procedures'' for 60 min with 250 n UL5/52 proteins, 750 n UL8 protein, and 300 n ICP8 or E. coli SSB as indicated.
Column 1, no protein; column 2, UL5/52 proteins;
column 3, UL5/52 proteins and UL8 protein; column
4, UL5/52 proteins and ICP8; column 5, UL5/52 proteins
and E-SSB; column 6, UL5/52 proteins, UL8 protein, and ICP8;
column 7, UL5/52 proteins, UL8 protein, and E-SSB.
[View Larger Version of this Image (24K GIF file)]
Effects of ICP8, E-SSB, and UL8 Protein on the
DNA-dependent ATPase Activity of the UL5/52
Proteins
The dependence of helicase action on ATP hydrolysis led
us to examine the effects of ICP8, E-SSB, and UL8 protein on the
DNA-dependent ATPase activity of the UL5/52 proteins. Under
the conditions used in this study, DNA-dependent ATP
hydrolysis by the UL5/52 proteins proceeded with linear kinetics (Fig.
7). When included, UL8 protein was present at a 3-fold
molar excess over the UL5/52 proteins.
Fig. 7.
DNA-dependent ATPase activity of
the UL5/52 proteins. This representative time course shows the
linear kinetics of ATP hydrolysis by the UL5/52 proteins. The reaction
was performed as described under ``Experimental Procedures.'' The
arrow indicates the time of addition of the UL5/52 proteins.
Abscissa, time (seconds); ordinate, absorbance at
340 nm.
[View Larger Version of this Image (13K GIF file)]
Fig. 8 shows the effects of ICP8, E-SSB, and UL8 protein
on the rate of ATP hydrolysis by the UL5/52 proteins. There was no
significant effect on the rate of ATP hydrolysis in the presence of UL8
protein. In contrast, ICP8 or E-SSB caused significant inhibition,
depending on the protein/nucleotide ratio. An ICP8/nucleotide ratio of
1:7.5, which is in excess of the concentration required to coat the DNA
template, reduced the rate of ATP hydrolysis to 36%. At an
ICP8/nucleotide ratio of 1:15, the rate of ATP hydrolysis was reduced
to 75%. Similarly, a reduction in the rate of ATP hydrolysis was
observed at E-SSB concentrations that were in excess or sufficient to
coat the DNA template. Thus, E-SSB/nucleotide ratios of 1:17.5 and 1:35
reduced the rate of ATP hydrolysis to 26 and 41%, respectively. The
addition of UL8 protein to reactions containing ICP8 resulted in
partial or complete restoration of the rate of ATP hydrolysis,
depending on the concentration of ICP8. The addition of UL8 protein at
an ICP8/nucleotide ratio of 1:7.5 increased the rate of ATP hydrolysis
to 51%. Complete (95%) restoration of the rate of ATP hydrolysis was
observed in the presence of UL8 protein at an ICP8/nucleotide ratio of
1:15. In contrast, the addition of UL8 protein to reactions containing
E-SSB did not increase the rate of ATP hydrolysis. The ability of UL8
protein to increase the rate of ATP hydrolysis in reactions inhibited
by the addition of ICP8, but not in those with E-SSB, was also observed
at lower protein/nucleotide ratios (data not shown). These effects were
observed in several independent experiments.
Fig. 8.
Effects of ICP8, E-SSB, and UL8 protein on
the DNA-dependent ATPase activity of the UL5/52
proteins. Reactions were performed as described under
``Experimental Procedures.'' Where indicated, UL8 protein was present
at 75 n. Numbers in parentheses (see below) represent
ICP8/nucleotide and E-SSB/nucleotide ratios. ICP8/nucleotide ratios of
1:7.5 and 1:15 correspond to 800 and 400 n ICP8,
respectively. E-SSB/nucleotide ratios of 1:17.5 and 1:35 correspond to
342.9 and 171.4 n E-SSB, respectively. Column
1, UL5/52 proteins; column 2, UL5/52 proteins and UL8
protein; column 3, UL5/52 proteins and ICP8 (1:7.5);
column 4, UL5/52 proteins and E-SSB (1:17.5); column
5, UL5/52 proteins, UL8 protein, and ICP8 (1:7.5); column
6, UL5/52 proteins, UL8 protein, and E-SSB (1:17.5); column
7, UL5/52 proteins and ICP8 (1:15); column 8, UL5/52
proteins and E-SSB (1:35); column 9, UL5/52 proteins, UL8
protein, and ICP8 (1:15); column 10, UL5/52 proteins, UL8
protein, and E-SSB (1:35).
[View Larger Version of this Image (49K GIF file)]
Effects of ICP8, E-SSB, and UL8 Protein on the Primase Activity of
the UL5/52 Proteins
In this study, the primase activity of the
UL5/52 proteins was measured using a coupled assay in which RNA primers
were extended by Sequenase DNA polymerase using single-strand X174
DNA as template. To determine the effects of ICP8, E-SSB, and UL8
protein on primase activity, it was imperative to exclude any secondary
effects of these proteins on Sequenase activity. Table
II shows that UL8 protein had no significant effect on
the DNA polymerase activity of Sequenase using single-strand X174
DNA primed with random hexamer oligodeoxyribonucleotides. In contrast,
the addition of ICP8 or E-SSB reduced DNA synthesis to 53 and 75% of
the normal level, respectively. Similar results were obtained when
using singly primed M13 DNA as template instead of random-primed
X174 DNA (data not shown). The concentrations of ICP8 and E-SSB used
were in excess of those required to coat the DNA template, representing
protein/nucleotide ratios of 1:15 and 1:17.5, respectively, and were
the highest concentrations used in the primase assays. The magnitudes
of the effects of ICP8 and E-SSB on Sequenase activity cannot account
for their strong inhibition of UL5/52 primase-dependent DNA
synthesis (see Figs. 9 and 10). Consequently, it is reasonable to
assume that the observed effects of ICP8, E-SSB, and UL8 protein are
due to modulation of primase activity and not of Sequenase
activity.
Table II.
Effects of ICP8, E-SSB, and UL8 protein on DNA synthesis by Sequenase
Reactions were performed as described for the primase assay under
``Experimental Procedures,'' except that nucleoside triphosphates
were omitted, the MgCl2 concentration was 2.5 m,
and the template was pre-primed with 0.036 A260
units/assay of random hexamer oligodeoxyribonucleotides. ICP8 and E-SSB
were present at protein/nucleotide ratios of 1:15 (513 n)
and 1:17.5 (440 n), respectively. UL8 protein was present
at 75 n. The results reflect the average of two separate
experiments.
| Addition |
dNMP
incorporated |
Activitya
|
|
|
pmol |
%
|
| None |
166.9 ± 2.7 |
100
|
| ICP8 |
88.0 ± 0.1 |
53 |
| E-SSB |
124.6 ± 0.1 |
75
|
| UL8 protein |
179.0 ± 1.7 |
107 |
|
|
a
Normalized with respect to the reaction with Sequenase
only.
|
|
Fig. 9.
Effects of ICP8, E-SSB, and UL8 protein on
the primase activity of the UL5/52 proteins. Reactions were
performed as described under ``Experimental Procedures'' with 25 n UL5/52 proteins, 75 n UL8 protein, and ICP8
or E-SSB as indicated. Numbers in parentheses (see below) represent
ICP8/nucleotide and E-SSB/nucleotide ratios. ICP8/nucleotide ratios of
1:15, 1:30, and 1:60 correspond to 513, 257, and 128 n
ICP8, respectively. E-SSB/nucleotide ratios of 1:17.5, 1:35, and 1:70
correspond to 440, 220, and 110 n E-SSB, respectively.
Column 1, UL5/52 proteins; column 2, UL5/52
proteins and UL8 protein; column 3, UL5/52 proteins and ICP8
(1:15); column 4, UL5/52 proteins and E-SSB (1:17.5);
column 5, UL5/52 proteins, UL8 protein, and ICP8 (1:15);
column 6, UL5/52 proteins, UL8 protein, and E-SSB (1:17.5);
column 7, UL5/52 proteins and ICP8 (1:30); column
8, UL5/52 proteins and E-SSB (1:35); column 9, UL5/52
proteins, UL8 protein, and ICP8 (1:30); column 10, UL5/52
proteins, UL8 protein, and E-SSB (1:35); column 11, UL5/52
proteins and ICP8 (1:60); column 12, UL5/52 proteins and
E-SSB (1:70); column 13, UL5/52 proteins, UL8 protein, and
ICP8 (1:60); column 14, UL5/52 proteins, UL8 protein, and
E-SSB (1:70). The results reflect the average of two separate
experiments.
[View Larger Version of this Image (35K GIF file)]
Fig. 10.
Partial UL8 protein-dependent
restoration of UL5/52 primase activity in the presence of ICP8.
Reactions were performed as described under ``Experimental
Procedures.'' Where indicated, ICP8 was present at a
protein/nucleotide ratio of 1:15, corresponding to 513 n
ICP8. At each concentration of UL5/52 proteins, UL8 protein was present
at a 3-fold molar excess. , UL5/52 proteins; , UL5/52 proteins
and UL8 protein; , UL5/52 proteins and ICP8; , UL5/52 proteins,
UL8 protein, and ICP8. The results reflect the average of two separate
experiments.
[View Larger Version of this Image (20K GIF file)]
Figs. 9 and 10 show the effects of ICP8 and E-SSB on the primase
activity of the UL5/52 proteins in the absence and presence of UL8
protein. Where indicated, UL8 protein was present at a 3-fold molar
excess over the UL5/52 proteins. Consistent with the observations of
Tenney et al. (1994) , a 3-fold molar excess of UL8 protein
could stimulate the primase activity of the core enzyme up to 3-fold
(see Fig. 10).
Fig. 9 shows that while UL8 protein alone could
stimulate primase activity by a factor of 1.3, ICP8 or E-SSB caused
significant inhibition, depending on the protein/nucleotide ratio. An
ICP8/nucleotide ratio of 1:15, which is sufficient to coat the DNA
template, resulted in almost complete inhibition, with 7% residual
activity. In contrast, ICP8/nucleotide ratios of 1:30 and 1:60 resulted
in much lower levels of inhibition, with 56 and 78% residual activity,
respectively. Virtually complete inhibition of primase activity was
observed at E-SSB concentrations that were in excess or sufficient to
coat the DNA template. Thus, E-SSB/nucleotide ratios of 1:17.5 and 1:35
resulted in 4 and 7% residual activity, respectively. The inhibitory
effect of E-SSB was less severe at a ratio of 1:70, with 27% residual
activity. The addition of UL8 protein to reactions containing ICP8
resulted in a partial or complete reversal of the inhibition, depending
on the concentration of ICP8. At ICP8/nucleotide ratios of 1:15 and
1:30, primase activity was increased to 24 and 74%, respectively. The
addition of UL8 protein to reactions containing an ICP8/nucleotide
ratio of 1:60 led to complete (98.5%) restoration of primase activity.
In contrast, the addition of UL8 protein to reactions containing E-SSB
did not restore primase activity.
The stimulatory effect of UL8 protein on the UL5/52 primase and the
partial UL8 protein-dependent rescue from inhibition by
ICP8, present at a protein/nucleotide ratio of 1:15, were observed at
all concentrations of UL5/52 proteins examined (Fig.
10). Titration of the molar ratio of UL8 protein to
UL5/52 proteins from 0.5 to 15:1 did not enhance the rescue from
inhibition by ICP8 (data not shown).
DISCUSSION
We have examined the effect of UL8 protein on the utilization of
SSB-covered DNA templates by the UL5/52 DNA helicase-primase core
enzyme. In the absence of HSV-1 SSB, ICP8, or E-SSB, UL8 protein had no
significant effects on the DNA helicase or DNA-dependent
ATPase activities of the UL5/52 proteins. These observations are
consistent with data from other laboratories (Calder and Stow, 1990 ;
Dodson and Lehman, 1991 ). In addition, as previously reported by Tenney
et al. (1994) , UL8 protein could stimulate the primase
activity of the UL5/52 proteins ~3-fold.
In the absence of UL8 protein, ICP8 stimulated the DNA helicase
activity of the UL5/52 proteins ~3-fold. This observation is not
surprising since SSBs frequently stimulate DNA unwinding (Kornberg and
Baker, 1992 ; Lohman and Bjornson, 1996 ). The stimulatory effect of ICP8
was specific since heterologous E-SSB could not substitute for ICP8,
suggesting that ICP8 is not merely stabilizing unwound regions of DNA.
Consequently, the ability of ICP8 to stimulate the DNA helicase
activity of the UL5/52 proteins is indicative of a specific physical
interaction between these proteins. Consistent with our finding, Crute
and Lehman (1991) had previously reported the specific requirement for
ICP8 in the unwinding of nicked plasmids by the HSV-1 DNA
helicase-primase holoenzyme.
The primase and DNA-dependent ATPase activities of the
UL5/52 core enzyme were strongly inhibited by ICP8 or E-SSB in a manner
that varied with the SSB/nucleotide ratio. This observation may be
rationalized by assuming that SSBs prevent access of the UL5/52
proteins to the DNA template.
The addition of UL8 protein to reactions containing ICP8 and the UL5/52
core enzyme led to further stimulation of DNA unwinding and to reversal
of inhibition of the primase and DNA-dependent ATPase
activities. These effects were specific for ICP8-covered DNA templates
since UL8 protein failed to stimulate reactions containing E-SSB.
The DNA helicase-primase holoenzyme purified from HSV-1-infected cells
consists of a 1:1:1 complex of the UL5, UL8, and UL52 subunits (Crute
and Lehman, 1991 ). However, it is unclear what the relative ratios of
these proteins are in vivo. The only data regarding this
issue are that the UL8 transcript (Baradaran et
al., 1994 ) and protein (Olivo et al., 1989 ), like those
for the UL5 and UL52 genes, are of relatively low
abundance. In our experiments, UL8 protein was added to the core enzyme
to reconstitute the heterotrimeric holoenzyme. Tenney et al.
(1994) reported that optimal in vitro reconstitution of the
holoenzyme was achieved at a molar ratio of UL8 protein to UL5/52
proteins of 3:1. Accordingly, in our experiments, UL8 protein was
present at a 3-fold molar excess over the UL5/52 proteins. In
vivo, we envisage that the UL5/8/52 heterotrimer interaction with
ICP8-covered DNA templates would not require an excess of UL8
protein.
We propose that UL8 protein functions in a manner analogous to the
bacteriophage T4 gene 59 protein and the E. coli DnaC
protein. The T4 gene 59 protein has been reported to interact with T4
SSB (gene 32 protein)-coated single-strand DNA, and the DNA helicase
component (gene 41 protein) of the T4 DNA helicase-primase (gene 41/61
proteins) (Barry and Alberts, 1994a , 1994b ; Morrical et al.,
1994 ; Yonesaki, 1994 ). Consequently, its proposed role is to facilitate
loading of the T4 DNA helicase-primase onto DNA templates coated with
gene 32 protein to initiate lagging-strand DNA synthesis. The situation
during E. coli replication is more complex (reviewed by
Kornberg and Baker (1992) ). In this system, the DnaC protein loads the
DnaB helicase, and subsequently the DnaG primase, onto E-SSB-coated DNA
templates, either in reactions that require DnaA protein and a DnaA
protein recognition site or in combination with the primosome proteins
PriA, PriB, and PriC and a primosome assembly site.
Based on the ability of UL8 protein to mediate a functional interaction
between ICP8 and the UL5/52 core enzyme, we hypothesize that there may
be a direct interaction between these proteins. In the physiological
state, during DNA replication, this interaction would optimize the
utilization of ICP8-covered DNA templates. Our assumption of the
existence of protein-protein interactions between the subunits of the
HSV-1 DNA helicase-primase and ICP8 is supported by the finding that
anti-ICP8 rabbit serum can immunoprecipitate a protein complex that
contains the HSV-1 DNA helicase-primase holoenzyme, the heterodimeric
DNA polymerase, and ICP8 (Skaliter and Lehman, 1994 ).
FOOTNOTES
*
This work was supported in part by Grant AI 38335 from the
National Institutes of Health, a grant from the Ruth Estrin Goldberg
Memorial for Cancer Research, and Grant 13-96 from the Foundation of
the University of Medicine and Dentistry of New Jersey (to P. E. B.)
and by Grant 5036 from the Association pour la Recherche sur le Cancer
(to G. V.). The costs of publication of this
article were defrayed in part by the
payment of page charges. The article
must therefore be hereby marked
``advertisement'' in
accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
¶
To whom correspondence should be addressed. Tel.:
201-982-5215; Fax: 201-982-3644; E-mail:
boehmepe{at}njmsa.umdnj.edu.
1
The abbreviations used are: HSV-1, herpes
simplex virus type-1; SSB, single-strand DNA-binding protein; E-SSB,
E. coli SSB; EPPS,
N-2-hydroxyethylpiperazine-N -3-propanesulfonic
acid.
Acknowledgment
We are grateful to M.-J. Pillaire for the
construction of the Y-shaped DNA helicase substrate.
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N. Biswas and S. K. Weller
The UL5 and UL52 Subunits of the Herpes Simplex Virus Type 1 Helicase-Primase Subcomplex Exhibit a Complex Interdependence for DNA Binding
J. Biol. Chem.,
May 11, 2001;
276(20):
17610 - 17619.
[Abstract]
[Full Text]
[PDF]
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Copyright © 1996 by the American Society for Biochemistry and Molecular Biology.
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