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(Received for publication, December 29, 1995, and in revised form, June 7, 1996)
From the Methanol:5-hydroxybenzimidazolylcobamide
methyltransferase (MT1) is the first of two enzymes
involved in the transmethylation reaction from methanol to
2-mercaptoethanesulfonic acid in Methanosarcina barkeri.
MT1 only binds the methyl group of methanol when the cobalt
atom of its corrinoid prosthetic groups is present in the highly
reduced Co(I) state. Formation of this redox state requires
H2, hydrogenase, methyltransferase activation protein, and
ATP. Optical and electron paramagnetic resonance spectroscopy studies
were employed to determine the oxidation states and coordinating
ligands of the corrinoids of MT1 during the activation
process. Purified MT1 contained 1.7 corrinoids per enzyme
with cobalt in the fully oxidized Co(III) state. Water and N-3 of the
5-hydroxybenzimidazolyl base served as the upper and lower ligands,
respectively. Reduction to the Co(II) level was accomplished by
H2 and hydrogenase. The cob(II)amide of MT1 had
the base coordinated at this stage. Subsequent addition of
methyltransferase activation protein and ATP resulted in the formation
of base-uncoordinated Co(II) MT1. The activation mechanism
is discussed within the context of a proposed model and compared to
those described for other corrinoid-containing methyl group
transferring proteins.
Methanosarcina barkeri can utilize methanol as sole
source for methanogenesis and growth. The first step in the reduction
of methanol to methane is the formation of an enzyme-bound
methylcobamide catalyzed by methanol:5-hydroxybenzimidazolylcobamide
methyltransferase (MT1)1 (1).
The methyl group of methylated MT1 is subsequently
transferred to 2-mercaptoethanesulfonic acid (coenzyme M, HS-CoM) by
Co-methyl-5-hydroxybenzimidazolylcobamide:HS-CoM methyltransferase
(MT2) (2). As a result methyl-coenzyme M
(CH3-S-CoM) is produced, which is the substrate for the
final step in methanogenesis in all methanogens studied so far (3).
The corrinoid prosthetic group of MT1 can only be
methylated by methanol when the central cobalt atom of the cobamide is
present in the highly reduced Co(I) state (4, 5). Since this state is
extremely sensitive toward oxidation, MT1 readily
inactivates upon manipulation and even during catalysis. Reactivation
is possible and requires participation of a reducing system,
methyltransferase activation protein (MAP), and ATP (4, 6, 7, 8). The
reducing system consists of hydrogen, hydrogenase, and ferredoxin.
Ferredoxin is not absolutely required, though it stimulates the
apparent reaction rate of methyl group transfer (6).
Here, we report the UV-visible absorbance and electron paramagnetic
resonance properties of the corrinoid prosthetic groups of
MT1 under various additions of the reducing system, MAP,
and ATP. From these results, the sequence of events leading to the
formation of the cob(I)amide of MT1 is deduced. The
activation of MT1 proceeds by a novel mechanism, which is
presented in a model and compared to those described for other
corrinoid-containing methyl group-transferring proteins.
Cells of M. barkeri strain MS (DSM
800) were grown and harvested, and cell extract was prepared
anaerobically as described previously (6, 9).
Incubation mixtures were prepared in an
anaerobic glove box, and reactions were performed in crimp-sealed 10-ml
serum vials. MT1 activity was determined by measuring the
methanol-dependent HS-CoM conversion to
CH3-S-CoM when added to a reaction mixture containing
MT2/hydrogenase, MAP, and ferredoxin fractions obtained
after DEAE-Sepharose fractionation of cell extract of M. barkeri (6). A typical reaction mixture (final volume, 100 µl)
contained 50 mM TES/K+ buffer (pH 7.0), 24 mM MgCl2, 10 mM methanol, 10 mM HS-CoM, 2 mM ATP, 1 mM
2-bromoethanesulfonic acid, 20 µl of MT2/hydrogenase
fraction, 5 µl of ferredoxin fraction, 25 µl of MAP fraction, and
an amount (usually 25 µl) of MT1 to be tested (6). After
gassing with 50% H2, 50% N2 (100 kPa), the
vials were kept on ice. Reactions were started by placing the vials at
37 °C. After appropriate incubation periods, routinely 0, 15, 30, 45, and 60 min, reactions were stopped by placing the vials on ice.
Activity of methyl group transfer of methanol to HS-CoM was routinely
assayed by measuring the decrease in the amount of HS-CoM (see below).
The methyltransferase activity obtained was linearly dependent on the
amount of MT1 added.
The enzymatic activities of MT2, MAP, hydrogenase, and
ferredoxin were determined as described previously (4, 6, 8).
Because several of the enzymes
involved in the methanol:HS-CoM methyltransferase reaction are
oxygen-labile (1, 4, 6, 8), all handlings were performed in an
anaerobic glove box (97.5% N2, 2.5% H2) at
room temperature. The purification procedure started by applying 10 ml
of cell extract to a DEAE-Sepharose-CL-6B column and separating the
proteins involved in the methyltransferase reaction as described
previously (6). MT2 and hydrogenase activity eluted between
0.20 and 0.22 M NH4Cl. Fractions between 0.25 M and 0.34 M NH4Cl contained MAP
activity. MT1 was present in fractions eluting between 0.39 and 0.42 M NH4Cl and ferredoxin was obtained
between 0.50 and 0.56 M NH4Cl.
MT2/hydrogenase, MAP, and MT1 fractions were
washed by Amicon YM-10 ultrafiltration with 50 mM
TES/K+ buffer (pH 7.0) containing 15 mM
MgCl2 and 1 mM dithiothreitol to remove the
salt, and were concentrated to a final volume of 3, 6, and 1 ml,
respectively. Ethylene glycol was added as a stabilizing agent in a
final concentration of 10% (v/v). Ferredoxin was washed by Amicon YM-3
ultrafiltration and concentrated to a volume of 3 ml. Here, ethylene
glycol was added in a final concentration of 20%.
MT1 was purified to homogeneity with an anaerobic
Perkin-Elmer fast protein liquid chromatography system equipped with a
TSK DEAE-5-PW column (7.5 cm by 0.75 cm). After application of a
550-µl DEAE-Sepharose MT1 fraction, the column was washed
with 15 ml of 50 mM TES/K+ buffer (pH 7.0)
containing 15 mM MgCl2, 1 mM
dithiothreitol, and 10% ethylene glycol followed by a 113-ml linear
gradient of 0-0.25 M NH4Cl in the buffer.
Subsequently, the column was washed with 15 ml of 0.5 M
NH4Cl in the buffer to remove all bound proteins. The
eluate was monitored at 280 nm, and fractions of 0.9 ml were collected
at a flow rate of 0.45 ml min MAP was partially purified on a hydroxylapatite column packed with
TSK-Gel HA-1000 (7.5 by 0.75 cm) and equilibrated in 50 mM
TES/K+ buffer (pH 7.0) containing 1 mM
dithiothreitol, 0.5 mM CHAPS, and 10% ethylene glycol.
After application of the sample (1 ml), the column was washed with 15 ml of equilibration buffer. Bound protein was eluted by a 50-ml
simultaneous linear gradient of 50-0 mM TES/K+
and 0-300 mM ammonium phosphate buffer (pH 7.0); both
buffers contained 1 mM dithiothreitol, 0.5 mM
CHAPS, and 10% ethylene glycol. Fractions (0.9 ml) were collected at a
flow rate of 0.45 ml min In order to remove fortuitous Mn2+ that interfered with the
EPR experiments, MT2/hydrogenase and ferredoxin fractions
were applied separately to a Sep-Pak CM cation exchange cartridge and
eluted with 50 mM TES/K+ buffer (pH 7.0)
containing 1 mM dithiothreitol and 10% ethylene
glycol.
UV-visible light absorption spectra
were recorded in 1-ml quartz cuvettes on a Hitachi U-3200
spectrophotometer. Spectra of MT1 were recorded against a
reference that contained the same components except MT1.
EPR spectroscopy was carried out on a Bruker 200 D spectrometer
equipped with cryogenics, peripheral equipment, and data
acquisition/manipulation facilities as described previously (10).
Incubation mixtures were anaerobically transferred to EPR tubes under a
slight overpressure of hydrogen, and directly frozen in liquid
nitrogen. EPR spectra of controls containing the same components except
MT1, were also recorded and subtracted from the spectra of
the MT1-containing samples. In the controls MT1
was replaced by TES/K+ buffer. EPR spectra were simulated
by using the program KOPER (11, 12, 13).
Native PAGE, denaturing SDS-PAGE, and isoelectric focusing were
performed with prefabricated minigels using the Pharmacia PhastSystem
equipment (Uppsala, Sweden). The gels were stained with Coomassie
Brilliant Blue R-250. The subunit molecular weight of MT1
was determined by electrophoresis on a 10-15% gradient minigel with
SDS-buffer strips. The markers (Bio-Rad) were the following (Da):
Protein was determined with the Bio-Rad protein reagent with bovine
serum albumin as a standard. Molar concentrations of MT1
were calculated from the molecular mass (122,000 Da) of the protein
(1). Molar amounts of hydroxylapatite-purified MAP were estimated from
the reported Mr = 60,000 of the protein, taking
into account that approximately one-third of the total protein was MAP
(8). Corrinoids were quantified after conversion into the
dicyanocobamide derivatives. Samples of MT1 were diluted in
50 mM CAPS buffer (pH 10) containing 5 mM
potassium cyanide and incubated for 5 min at 90 °C (14).
Concentrations were calculated from the absorption at 580 nm
( All chemicals used were of analytical grade.
HS-CoM, 2-bromoethanesulfonic acid, TES, CAPS, bathophenanthroline
disulfonate, and hexokinase (yeast type VI) were purchased from Sigma.
Dithiothreitol was from Serva Feinbiochemica (Heidelberg, Germany).
ATP, CHAPS, and myokinase (adenylate kinase) were purchased from
Boehringer (Mannheim, Germany). DEAE-Sepharose-CL-6B was from Pharmacia
LKB Biotechnology AB (Uppsala, Sweden). TSK DEAE-5-PW and TSK-Gel
HA-1000 columns were obtained from TosoHaas (Stuttgart, Germany).
Sep-Pak CM cartridges were acquired from Waters Associates (Milford,
MA). Gasses were supplied by Hoek-Loos (Schiedam, The Netherlands). To
remove traces of oxygen, H2-containing gases were passed
over a BASF RO-20 catalyst at room temperature; nitrogen was passed
over a prereduced BASF R3-11 catalyst at 150 °C. The catalysts were
a gift of BASF Aktiengesellschaft (Ludwigshafen, Germany).
Methanol:5-hydroxybenzimidazolylcobamide
methyltransferase was purified to homogeneity from cell extract of
M. barkeri strain MS by the simple two-step procedure
summarized in Table I. After this stage only one band
was detected upon nondenaturing 8-25% gradient PAGE showing an
apparent Mr = 121,000 (Fig. 1).
Superose-6 chromatography indicated a molecular mass of about 120 kDa.
These values favorably agree with the Mr = 122,000 described before (1). Prior to staining of the gel, the protein
could be observed as a red-colored band indicative of the presence of
corrinoids. Denaturating SDS-PAGE demonstrated the
Purification of methanol:5-hydroxybenzimidazolylcobamide
methyltransferase
MT1 was anaerobically
isolated as a red-colored protein. The UV-visible spectrum of the
prosthetic group (Fig. 2) was typical of Co(III)
corrinoids (20, 21, 22). Exposure to air did not further alter the
spectrum. The prosthetic group showed absorption maxima at 352 (2.89),
493 (1.07), and 522 (1.04) nm with shoulders at 388 (1.16), 403 (1.04),
and 465 (1.0) nm (the numbers in parentheses express the absorbance
relative to that of the shoulder at 465 nm). The major visible
absorption band at 352 nm is characteristic of the presence of water as
the upper ligand (21, 22). Compared to free aquo-B12-HBI,
the absorbance of the corrinoid of MT1 was relatively
increased in the 375-475 nm region. Incubation of purified
cob(III)amide-MT1 with up to equimolar amounts of MAP
and/or ATP (up to 5 mM) had no effect on the UV-visible
spectrum of the corrinoid prosthetic groups.
When MT1 was incubated under hydrogen with a small amount
of MT2/hydrogenase and ferredoxin, the protein turned
yellow. The spectrum (Fig. 3) displayed the typical
characteristics of cob(II)amide (5, 20, 21). Absorption maxima were
observed at 417 (1.31) and 465 (1.29) nm with shoulders at 315 (3.64),
356 (2.11), and 535 (1.0) nm (the numbers in parentheses indicate the
absorbance relative to that of the shoulder at 535 nm). Compared to the
spectrum of free Co(II) B12-HBI, the Co(II) prosthetic
group of MT1 exhibited a relative increase in the
absorbances around 400 nm and in the 500-600 nm regions. Prolonged
incubation or the addition of higher amounts of hydrogenase and
ferredoxin did not result in any alterations of the spectrum.
Ferredoxin was not absolutely required for the reduction.
The spectrum of the hydrogen-reduced Co(II) form of MT1 was
not altered by the subsequent addition of MAP, ATP, or methanol alone.
When both MAP and ATP were added the shoulder at 315 nm of the
cob(II)amide of MT1 disappeared while no significant
changes occurred at higher wavelengths (Fig. 3). Interestingly, a
distortion of the absorbance band at 315 nm is the major feature, when
the HBI nucleotide in free Co(II) B12-HBI becomes
decoordinated (``base-off'') upon acidification (21). When
MT1 was incubated in the presence of the reducing system
(H2, hydrogenase, ferredoxin), MAP and ATP, we never
detected the characteristic absorption peak of cob(I) amide at 390 nm. However, the additional presence of methanol in even low
concentrations (<100 µM) resulted in the instantaneous
formation of methyl-B12-HBI as found by high performance
liquid chromatography analysis of the extracted corrinoids (data not
shown; see also Ref. 6).
EPR observations of corrinoids are limited
to the paramagnetic Co(II) state of cobalt. Thus, the purified,
cob(III)amide-containing MT1 was EPR-silent. After
incubation of MT1 with hydrogenase and ferredoxin under
hydrogen the typical signal of the nucleotide base-coordinated
(``base-on'') form of Co(II) corrinoids (Fig.
4A) was observed (23). The spectrum could be
simulated on the basis of a near-axial, low spin Co(II) complex with
hyperfine splitting from the I = 7/2 cobalt nucleus and
superhyperfine splitting from an axially coordinating nitrogen with
I = 1 (Table II and Fig. 4B).
For a reasonable fit, it was required that the line width in the
z-direction was a function of the cobalt nuclear quantum number
mI. In the perpendicular (or
xy-) direction, there was no resolution. Therefore, the
combined xy values for g, A, and
W were not uniquely determined. However, it was found by
extensive fitting that the low field shoulder to the experimental
spectrum could not be simulated by any combination of these parameters.
This shoulder might well be a manifestation of non-collinearity of the
g and A(Co) tensors, i.e. the actual
symmetry of the coordination site was probably triclinic.
Simulation parameters for the low spin Co(II) EPR spectra of
MT1
While the presence of MAP or ATP alone did not alter the EPR spectrum of Co(II) MT1, the combination of both induced a remarkable change (Fig. 4C). The spectrum was now a sum of two Co(II) spectra: a base-on and a base-off spectrum. The cobalt hyperfine splitting of the latter could be seen to extend to higher field values than that of the former. This pattern became somewhat obscured when we subtracted the pure base-on spectrum from the sumspectrum (resulting in trace D in Fig. 4). Because of the low signal-to-noise ratio, however, the xy pattern of the base-off spectrum was now more easily identified, thus allowing for a simulation of this spectrum (Table II and Fig. 4E). From the simulated spectra (Fig. 4, B and E) and the combined spectrum (Fig. 4C) it could be estimated that 38% of the cob(II)amide in MT1 was base-uncoordinated. Lower concentrations of MAP gave lower amounts of the base-off species. The formation of base-off Co(II) MT1 indicated that, as the result of the action of MAP and ATP, the HBI-base was no longer coordinated and that no ligand or a weak ligand with poor delocalization properties was present (23). Optical and EPR spectroscopical studies were employed to determine
the oxidation state of the central cobalt atom and the coordination of
the ligands in the corrinoid protein MT1 under various
additions of MAP, ATP, and a reducing system. After isolation
MT1 contained somewhat less then 2 mol of
B12-HBI/mol of Fig. 5. Proposed scheme for the reductive activation of MT1. [Co(III)] and [Co(II)] represent the various reduction states of the cobalt atom of the corrinoids of MT1. Coordination of N-3 of the 5-hydroxybenzimidazolyl base is illustrated by the connecting line between Co and N. In the base-off Co(II) state, no ligand is shown but it is possible that a ligand with poor delocalization properties, e.g. water, is present. The dashed line indicates that it is not fully known how and at which stage MAP-phosphate is dephosphorylated. By the combined action of the reducing system, MAP-phosphate and methanol, catalytically active MT1 containing methyl-B12-HBI is subsequently produced. Hyd, hydrogenase; Fd, ferredoxin. Ferredoxin is shown in parentheses because activation can occur in the absence of this electron carrier (6).
The conversion of base-on into base-off cob(II) amide has an important
implication. In non-protein bound B12-HBI, such base-off
conversion causes the midpoint redox potential of the Co(II)/Co(I)
couple to increase from -592 to -500 mV (21). In a similar way, the
action of MAP and ATP may facilitate the reduction in MT1
of cob(II)amide to the catalytically active species, the powerful
nucleophile cob(I)amide. Although we could not detect the direct
formation of cob(I)amide in our experiments, the findings that (i) the
species is produced upon demethylation of methylated MT1
(5) and (ii) methyl-B12-HBI bound to MT1 is
formed during the activation of the enzyme in the presence of
H2, hydrogenase, MAP, ATP and methanol (this paper; Refs.
4, 5, 6), demonstrate that cob(I)amide must play a role in the catalytic
and reductive activation cycles. The cob(II)amide/cob(I)amide
midpoint redox potentials are strongly influenced by the protein
environment. In the corrinoid/iron-sulfur proteins involved in
acetyl-CoA synthesis and degradation that have been isolated from
Clostridium thermoaceticum (24) and from
Methanosarcina thermophila (25), reduction to the
catalytically active Co(I) state occurred at midpoint redox potentials
of In order to be active, corrinoid-dependent methyltransferases often require an ATP-dependent reductive activation (3, 30). As yet, only the activation mechanism of methionine synthase has been elucidated (31). Here, ATP is the substrate in the formation of the potent methylating agent, S-adenosyl methionine, which traps Co(I) out of the thermodynamic unfavorable Co(II) to Co(I) reduction equilibrium (31). In this paper, we have presented evidence that nature developed another approach to facilitate the generation of the active enzymes, notably by inducing in an ATP-dependent process the conformational change of the prosthetic group. Perhaps other corrinoid-containing methyltransferases from methanogens (3) and other obligate anaerobic organisms (32) are activated in a similar fashion. * The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked ``advertisement'' in accordance with 18 U.S.C. Section 1734 solely to indicate this fact. ¶ To whom correspondence should be addressed. Tel.: 31-24-3653437; Fax: 31-24-3553450; E-mail: jankel{at}sci.kun.nl. 1 The abbreviations used are: MT1, methanol:5-hydroxybenzimidazolylcobamide methyltransferase; CH3-S-CoM (methyl-coenzyme M), 2-(methylthio)ethanesulfonic acid; HS-CoM (coenzyme M), 2-mercaptoethanesulfonic acid; MT2, Co-methyl-5-hydroxybenzimidazolylcobamide:HS-CoM methyltransferase; MAP, methyltransferase activation protein; CHAPS, 3-[(3-cholamidopropyl)dimethylammonio]-1-propanesulfonate; PAGE, polyacrylamide gel electrophoresis; TES, N-tris-(hydroxymethyl)methyl-2-aminoethanesulfonic acid; HBI, 5-hydroxybenzimidazolyl; B12-HBI, 5-hydroxybenzimidazolylcobamide; CAPS, 3(cyclohexylamino)-1-propanesulfonic acid; kPa, kilopascal(s). We thank Jeroen Zandbergen and Steven van den Berg for assistance in the purification and characterization of MT1. We gratefully acknowledge Roel Wassenaar for skillful determination of the effect of MAP-phosphate.
©1996 by The American Society for Biochemistry and Molecular Biology, Inc. This article has been cited by other articles:
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