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(Received for publication, April 10, 1996, and in revised form, June 21, 1996)
From the Department of Molecular and Cellular Biology, Roswell Park
Cancer Institute, Buffalo, New York 14263 and the
Mouse As4.1 cells, obtained after
transgene-targeted oncogenesis to induce neoplasia in renal
renin-expressing cells, express high levels of renin mRNA from the
endogenous Ren-1c gene. We have used these cells to
characterize the role of the Ren-1c proximal
promoter (+6 to Renin, a protease involved in the regulation of mammalian blood
pressure and electrolyte balance, is expressed in a complex
developmental and tissue-specific pattern. Studies of mouse and rat
fetuses have revealed that, early in development, renin expression is
abundant in smooth muscle cells in the intrarenal arteries (1, 2, 3).
However, as renal development proceeds, there is a progressive
restriction of renin expression to smaller arteries and arterioles
until, ultimately, it is limited to a small group of specialized cells
at the most distal region of the afferent arteriole. These cells are
known as juxtaglomerular cells and represent a rare cell type in the
mature kidney (<0.1% of the total kidney cell population) (4). Under
normal physiological conditions, the juxtaglomerular cells of the
kidney are the principal source of active renin in the circulation (5,
6). Interestingly, the developmental restriction of renin-expressing
cells in the kidney is not a terminal event. Vascular smooth muscle
cells appear to retain the ability to express renin and are actually
recruited to a renin-expressing phenotype in response to a variety of
physiological or pharmacological cues (7, 8). Renin mRNA is also
expressed in several extrarenal tissues that do not share an obvious
embryological origin with the renin-expressing cells of the kidney (see
Ref. 9 for review).
In mice, some strains contain a duplicated copy of the renin gene. This
second locus is designated Ren-2 and is physically linked to
the Ren-1 gene common to all mice (10, 11, 12). Although
Ren-1 and Ren-2 are expressed at approximately
equal levels in the kidney, expression differences distinguish the two
loci in extrarenal tissues (13, 14, 15). Expression differences are also
observed at extrarenal sites for alleles of the Ren-1 locus,
and by genetic and transgenic analyses, these differences appear to be
regulated by sequences closely linked to the structural gene (16,
17).
The lack of a suitable culture system for transfection analysis has
hampered efforts to define regulatory regions controlling renin gene
expression. However, evidence that important regulatory sequences may
lie several kilobases distal to the renin gene has been suggested from
the study of transgenic mice harboring chimeric genes containing renin
5 To determine cis-acting regulatory regions controlling
expression of the renin genes, cell lines that do not express renin
were previously and widely used as a model system (40, 41, 42, 43). Data
obtained with these cell lines suggested the involvement of proximal
promoter sequences in renin transcriptional regulation. The fact that
these cell lines do not express their endogenous chromosomal renin gene
has raised caveats and limited interpretation.
In this work, we used the clonal cell line As4.1 (ATCC CRL2193), which
maintains expression of its endogenous renin gene over long-term
culture and was established from a kidney tumor of a Ren-2
5 Restriction enzymes and DNA-modifying enzymes
were purchased from Life Technologies, Inc., Promega, and Boehringer
Mannheim. [14C]Chloramphenicol was obtained from Amersham
Corp. Silica gel plates for thin layer chromatography were obtained
from J. T. Baker Inc. Deoxyribonucleotides and n-butyryl-CoA
were from Sigma. NotI linkers and the oligonucleotide 18-Bam
were obtained from New England Biolabs Inc. and the Biopolymer Core
Facility at the Roswell Park Cancer Institute, respectively. The
phagemid vector pTz18R was obtained from Pharmacia Biotech Inc. Cell
culture media, serum, and supplements were from Life Technologies, Inc.
and Sigma. T7 RNA polymerase and the vectors pCAT-Basic, pUC19, and
pGEM-7Zf The renin-expressing As4.1 cell line was
previously established in this laboratory from a kidney tumor of a
transgenic mouse harboring a Ren-2 5 Plasmid pCAT-NotI was made
by removing the BamHI site (located 3 Plasmid R1C-4.1CAT was constructed by inserting the 5 Plasmid DNA was prepared by the Triton lysis method (27) and two
sequential cesium chloride/ethidium bromide equilibrium centrifugation
steps. A minimum of two different plasmid preparations have been tested
for each construct.
Polymerase chain reaction was used to mutate the renin
proximal promoter. The +6/ As4.1 cells were
propagated in Dulbecco's modified Eagle's medium containing 10%
fetal bovine serum. As4.1 cells were transfected by electroporation
(28) using a Cell Porator and electroporation chambers (0.4-cm
electrode spacing; Life Technologies, Inc.). 72 h prior to
transfection, As4.1 cells were subcultured into duplicate
75-cm2 flasks (2 × 106 cells/flask)
containing 20.0 ml of Opti-MEM reduced-serum medium supplemented with
2% fetal bovine serum and 1 mg/ml ALBUMAX II. The switch from
Dulbecco's modified Eagle's medium + 10% fetal bovine serum to the
supplemented reduced-serum medium is optimal for cell attachment
post-electroporation and expression of transfected renin-CAT constructs
in As4.1 cells. Conditions for electroporation were as follows. Cells
(2 × 107) were resuspended in 1.0 ml of 1 × HeBS (25 mM Hepes, pH 7.05, 140 mM NaCl, 5 mM KCl, 0.75 mM
Na2HPO4, 6 mM glucose) with a total
plasmid DNA concentration of ~25-50 µg/ml plus 250 µg/ml
sonicated salmon sperm DNA added as carrier. The cells were then
exposed to a single electric impulse of 300 V at a capacitance setting
of 1180 microfarads and subsequently transferred to 25-cm2
flasks containing 8.0 ml of supplemented reduced-serum medium plus
penicillin (100 units/ml) and streptomycin (100 µg/ml).
To correct CAT values in each experiment for transfection efficiency,
cells were cotransfected with 3 µg of plasmid containing Rous sarcoma
virus promoter driving Cells were
harvested 48-72 h post-transfection and resuspended in 125 µl of
0.25 M Tris, pH 8.0. The extract was subjected to three
freeze/thaw cycles, and prior to CAT assays, extracts were heated to
60 °C for 10 min. The protein concentration was determined by the
method of Bradford (29) using bovine albumin as a protein standard. CAT
activity was determined as described by Gorman et al. (30),
except that n-butyryl-CoA (31) was substituted for
acetyl-CoA in the assay. Equal amounts of protein (35 µg) were
assayed for CAT activity in 125 µl of 0.25 M Tris, pH
8.0, 0.125 µCi of [14C]chloramphenicol (55 mCi/mmol (1 Ci = 37 GBq); Amersham Corp.). The amount of butyrylated
[14C]chloramphenicol generated in the reaction was
determined by thin layer chromatography and by PhosphorImager using
Imagequant software (Molecular Dynamics, Inc., Sunnyvale, CA). CAT
activities are given as percent conversion of chloramphenicol obtained
in the enzyme assay by 35 µg of cellular protein. Values in each
experiment were corrected for transfection efficiency by measuring
Plasmid Ribo Crude nuclear extracts from all
cell lines used were prepared by the method of Gorski et al.
(32). The concentration of proteins in resulting extracts was 2-3
mg/ml. Extracts were stored as aliquots at The oligonucleotides used in this assay were annealed
and labeled with [ To
analyze the renin gene sequences involved in the regulation of
transcription in As4.1 cells, we first divided the mouse renin gene
5 To identify sequences in this promoter fragment that are binding sites
for nuclear proteins that may play a role in transcriptional regulation
of the renin gene, we constructed 10 double-stranded oligonucleotides,
26 bp in length and overlapping each other by 13 bp, covering the
entire renin proximal promoter with some additional sequence (+12 to
Oligonucleotides that exhibited binding with nuclear extracts from
renin-expressing As4.1 cells were tested by EMSA for binding to nuclear
extracts from two non-renin-expressing cell lines, Ltk In
Fig. 2, a series of EMSAs were performed to determine
the minimal sequence within oligonucleotide 5 necessary for binding of
cell-specific nuclear proteins from As4.1 cells.
First, the two oligonucleotides overlapping oligonucleotide 5 (oligonucleotides 4 and 6) (see Figs. 1A and 2A)
were tested in competition assays (Fig. 2B) to further
delineate core binding sequence. Neither sequence was able to compete
complex formation with oligonucleotide 5. These results are consistent
with findings shown in Fig. 1B, where these
oligonucleotides, when used as probes, did not form complexes with
nuclear proteins from As4.1 cells.
Second, a sequence with slightly different coordinates was chosen for
further EMSA because it covers the region with the highest percent
identity among mouse, rat, and human renin gene promoters (51, 52) and
includes a large portion of oligonucleotide 5 sequence. This sequence,
designated 1c (Fig. 2A), formed complexes with
the same mobility as oligonucleotide 5 and was an effective competitor
for complexes formed with oligonucleotide 5 (Fig. 2B). This
suggests that the first 7 base pairs on the 5 Third, an oligonucleotide with sequence derived from the human renin
gene analogous to oligonucleotide 1c (HR) (Fig.
2A) successfully competed oligonucleotide 5 interaction
(Fig. 2B) and formed the same complex when used as a probe
(data not shown). Although the human renin sequence in this region (HR)
(Fig. 2A) is highly homologous to the mouse sequence, some
differences are located 1) in the sequence preceding the A/T-rich
region (TGGGG for mouse and CAGGG for human renin) and 2) downstream of
the A/T-rich region (AAG for Ren-1, GAG for
Ren-2, and GGG for human renin). Competition studies
presented in Fig. 2B with human renin gene (HR) and in Fig.
2C with Ren-2 (2d) sequences indicate
that these differences do not affect protein binding to this
region.
The A/T-rich sequence on 1c appears to be central for
complex formation with nuclear proteins from As4.1 cells. Surprisingly,
oligonucleotide 6, which contains the intact A/T-rich sequence, did not
form any complexes in EMSA or compete with binding to oligonucleotide
5. Because A/T-rich sequence is located on the end of oligonucleotide
6, we considered the possibility that the stability of the
double-stranded form was altered, which in turn could affect complex
formation. Alternatively, it is possible that sequence just
upstream of the A/T-rich region is required for protein binding. To
test these possibilities, we mutated oligonucleotide 6 (6M) by
the addition of three deoxycytidine residues to its 5 Fourth, to delineate the sequence on 1c responsible for
protein binding, six 1c mutants (M1 to M6) were used in
EMSA as competitors for 1c complex formation (Fig.
2A). Mutants M3 and M6, with altered A/T-rich sequence
(TAATAAAT), lost their competition ability (Fig. 2C), while
mutation of the two nucleotides immediately following the A/T box
(mutant M2) resulted in significantly decreased competition (Fig.
2C). Mutations M1, M2, and M5, which do not affect the
A/T-rich sequence, still efficiently competed the 1c
binding.
Constructs were
developed by fusing Ren-1c 5 In an effort to find elements that activate transcription of the
reporter gene, we attached various lengths of Ren-1c
5
To examine the functional role of the
Thus, sequence between positions Total RNAs isolated from nontransfected and
transfected As4.1 cells were analyzed by the RNase protection assay as
described under ``Experimental Procedures.'' The mRNA start site
was determined using a labeled 432-nucleotide antisense cRNA probe
(Fig. 5A). A schematic diagram of the
transfected renin-CAT constructs analyzed by the RNase protection assay
is given in Fig. 5B. Constructs with the upstream region
( Much work has been aimed at determining the cis-acting
regulatory regions controlling cell-specific expression of the renin
genes. Analyses of renin constructs in transgenic mice (3, 18, 19, 38,
39) and after transfection into cell lines that lack expression of
their endogenous renin genes (40, 41, 42, 43) have been difficult to correlate,
and therefore, no clear picture has emerged.
In previous experiments with transgenic mice carrying a
Ren-2 genomic transgene (including 2.5 kb of 5 To further define the role of the renin 5 To delineate the proximal promoter region more precisely, we have
scanned the relevant region for identifiable protein-DNA interactions
by EMSA. In this region, EMSA detects three sequence-specific
interactions near positions Sun et al. (35, 36) and Gilbert et al. (37)
detected binding of nuclear proteins from the pituitary cell line GC to
a region on the human renin promoter that is analogous to the mouse
In our transfection assays using the As4.1 cell line, we were not able
to detect significant increases in reporter gene transcription with the
123-bp promoter (+6 to Mutations within the To account for all the data presented, we currently favor a model in
which a complex interplay of cell-specific and general factors is
associated with generation of the cell specificity of renal renin
expression. In this model, a specific factor from renin-expressing
cells is required to bind at the crucial proximal promoter site to
relieve what are possibly ubiquitously functional, negative
influence(s) interacting farther upstream. This relief, or abrogation,
of inhibition permits an enhancer function associated with the most
distal elements to boost expression from the basal transcription
machinery only in renin-expressing cells. This model has the potential
to explain not only the relatively exquisite tissue specificity of
renin expression, but also certain key features of renal renin
expression, namely, the plasticity of expression in renal vascular
smooth muscle found as a function of development or under physiological
and pathophysiological perturbation.
In conclusion, these results, derived by transient transfection
analysis of our renin-expressing cell line, are consistent with
previous findings from transgenic mice. These data provide compelling
evidence that sequences located both distal and proximal to the
promoter are involved in the tissue- and cell-specific expression of
the mouse renin genes.
We thank Dr Robert G. Hughes (Roswell Park
Cancer Institute) for Ltk
Volume 271, Number 37,
Issue of September 13, 1996
pp. 22499-22505
©1996 by The American Society for Biochemistry and Molecular Biology, Inc.
§ and
Cardiovascular Diseases Division, Departments of Internal
Medicine and Physiology and Biophysics, University of Iowa College of
Medicine, Iowa City, Iowa 52242
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
FOOTNOTES
Acknowledgments
REFERENCES
117) in the regulation of renin gene transcription.
It was found that 4.1 kilobases (kb) of Ren-1c
5
-flanking sequence, in combination with the proximal promoter, are
required for strong activation (~2 orders of magnitude over the basal
level of the promoter alone) of the chloramphenicol acetyltransferase
reporter in transfection assays. Within the 4.1-kb fragment, a 241-base
pair region was identified that retains full activity in an
orientation-independent manner in combination with the promoter. The
resulting transcripts initiate at the normal renin start site.
Electrophoretic mobility shift assays identified a sequence at
approximately position
60 in the promoter region that binds nuclear
proteins specific for renin-expressing As4.1 cells. Mutations in this
sequence, which disrupt binding of nuclear protein(s), completely
abolish activation of transcription by the 4.1-kb fragment. Activation
of transcription by the 241-base pair enhancer was still observed,
although it was diminished in magnitude (60-fold over the mutated
promoter alone). We present a model derived from the current data that
suggests that regulation of renin expression is achieved through
cooperation of transcription factors binding at the proximal promoter
element and a distal enhancer element to abrogate or override the
effects of an intervening negative regulatory region.
-flanking sequence linked to the coding region of SV40 T antigen. T
antigen constructs containing either 0.45 or 2.5 kb1 of Ren-1 or Ren-2
upstream sequence, respectively, demonstrated inappropriate expression
in transgenic mice (18). However, transgenes containing more extensive
5
-flanking sequence (4.6 kb) demonstrated the correct tissue- and
cell-specific expression of renin throughout development and in young
adults (3, 19) and an appropriate response to physiological
perturbation with captopril (20).
-flanking sequence/SV40 T antigen transgenic mouse (21). The As4.1
cell line demonstrates several features that are characteristic of
kidney juxtaglomerular cells, including high level expression of renin
mRNA and the ability to store and secrete active renin (21). These
cells represent a potentially valuable resource for the elucidation of
cis-acting elements and trans-acting factors
involved in the regulation of renin gene expression. In this report, we
present our experiments using the As4.1 cell line, which support the
hypothesis that regulatory sequences essential for cell-specific
expression of renin are present in both the proximal promoter and
distal 5
-flanking sequences.
Materials
were purchased from Promega. The RNase
protection assay kit was purchased from Ambion Inc. Oligonucleotides
used for electrophoretic mobility shift assays (EMSAs) were obtained
from DNA International or the Biopolymer Core Facility at the Roswell
Park Cancer Institute.
-flanking sequence/SV40
T antigen hybrid transgene (21). This line has been submitted to the
American Type Culture Collection (ATCC CRL2193). The endogenous renin
gene in the As4.1 cell line is Ren-1c. The mouse
Ltk
cell line (obtained from Dr. R. G. Hughes, Roswell
Park Cancer Institute) was originally derived from the subcutaneous
connective tissue of a C3H mouse (22). The Ltk
cell line
also has an endogenous Ren-1c gene on chromosome 1, but does not express renin (23). SV-T2 is a mouse embryonic cell line
(SV40 virus-transformed BALB/c/3T3 embryonic cells) obtained from the
American Type Culture Collection (CCL163.1).
of the CAT gene) of
pCAT-Basic and converting it to a NotI site by use of a
linker. Plasmid p
117CAT was constructed by inserting a renin promoter
fragment (+6 to
117); numbering relative to the major transcription
start site) into the XbaI site adjacent to the CAT coding
sequences of pCAT-NotI. The renin promoter fragment
described above was derived from a DBA/2J Ren-2 plasmid
(24). The BamHI site located at position
117 of the
Ren-2 gene is missing in Ren-1 due to a single
base polymorphism at position
115 of the renin 5
-flanking sequence.
To join sequences upstream of the Ren-1c gene with
the renin promoter-CAT construct, a BamHI site was created
at position
117 in the 5
-flanking region of
Ren-1c by site-directed mutagenesis (26). Briefly, a
5.3-kb BamHI fragment containing the sequences from +1.2 to
4.1 kb of the Ren-1c gene was isolated from a
previously described
clone (
BALB-1) (25), ligated into the
BamHI site of phagemid pTz18R, and subjected to
site-directed mutagenesis. The 18-Bam primer
(5
-GGCCAAGGA
CCAGCTCC-3
) was used in
oligonucleotide-directed mutagenesis of the plasmid pTz18R
single-stranded form to cause a C
T substitution at position
115
of Ren-1c and thus create a BamHI site at
position
117. The modified construct was identified by restriction
digest analysis and later sequenced to confirm the specific base
change.
-flanking
sequence (
117 to
4100) of the BALB/c Ren-1c gene
into a BamHI site present at position
117 of the renin
promoter in p
117CAT. Plasmids containing different lengths of
Ren-1c 5
-flanking sequence were constructed using
restriction sites present on the 4.1-kb fragment: PstI
(
1.8 kb), SphI (
2.625 kb), AccI (
2.866 kb),
and PstI (
3.1 kb). Plasmid Ribo
117/CAT was constructed
by subcloning a 385-bp BamHI-EcoRI fragment of
p
117CAT (position
117 in the renin promoter to the EcoRI
site at position +270 within the CAT gene) into pGEM-7zf
.
The sequence of the 4.1-kb fragment of Ren-1c
flanking region has been submitted to the Genome Sequence Data Bank
under accession number L78789[GenBank].
117)
117 promoter fragment within the p
117CAT
plasmid was used as a template. The oligonucleotide primers used were
as follows: A, 5
-GGCCCTGG
gAcTCAGAGCAG-3
(in the
renin promoter sequence with mutations (lower-case) within the A/T-rich
region forming a unique KpnI restriction site (underlined));
B, 5
-GACGGGC
CTGTGTAGCCCAGTCCCCCT-3
(containing
sequence from the 3
-end of the renin promoter and overlapping
pCAT-Basic sequence with an XbaI restriction site
(underlined)); C, 5
-CTGCTCTGAgTcggTACCCCAGGGCC-3
(sequence
complementary to oligonucleotide primer A); and D,
5
-GACGGCAAGCTTGCATGCCTGCAGGTCGACTC-3
(pCAT-Basic sequence upstream of
the renin promoter, with the PstI restriction site
(underlined)). The polymerase chain reaction product amplified with
oligonucleotide primers A and B was treated with KpnI and
PstI. The polymerase chain reaction product amplified with
oligonucleotide primers C and D was treated with KpnI and
XbaI. Both fragments were subcloned into the pCAT-Basic
plasmid treated with PstI and XbaI, resulting in
a cloned renin promoter fragment with four point mutations within the
A/T-rich region. The construct with mutated sequence was identified by
restriction analysis and later sequenced to confirm the specific base
change.
-galactosidase (RSV-
-gal). Promoterless
CAT plasmid (pCAT-Basic) was used to determine the background of CAT
activity in these assays.
-galactosidase activity in the same lysates. The average number of
repeats for each value determined was four. Data are expressed as
means ± S.D.
-Galactosidase Activity Assay
-Galactosidase activity
was determined by using the Galacto-Light PlusTM
chemiluminescent reporter assay according to the manufacturer's
instructions (Tropix Inc., Bedford, MA). Chemiluminescence was measured
on a Monolight 2010TM luminometer (Analytical Luminescence
Laboratory, San Diego, CA). Results are expressed as light
units/microgram of cell lysate.
117/CAT was
transcribed in vitro with SP6 RNA polymerase essentially as
described by the manufacturer of the expression vector (Ambion, Inc.),
using 50 µCi of [
-32P]GTP (3000 Ci/mmol) and 1 µg
of plasmid (linearized with BamHI). Full-length probe was
isolated from a 7 M urea, 5% acrylamide sequencing gel and
eluted overnight at 37 °C in 0.5 M NH4OAc, 1 mM EDTA, 0.2% SDS. Purified probe (1 × 105 cpm) was hybridized to 30 µg of RNA isolated from
transfected or nontransfected As4.1 cells and analyzed according to the
manufacturer's instructions using the RNase protection assay kit
(Ambion Inc.). Samples were then electrophoresed on 7 M
urea, 5% acrylamide sequencing gels.
70 °C and thawed only
once.
-32P]ATP using T4 polynucleotide
kinase, and double-stranded forms were purified from a 20%
nondenaturing polyacrylamide gel. Nuclear extracts were preincubated
for 15 min at room temperature in a 10-µl reaction mixture containing
12 mM Hepes, pH 7.9, 60 mM KCl, 4 mM MgCl2, 1 mM EDTA, 1 mM dithiothreitol, 12% glycerol, 0.5 mM
phenylmethylsulfonyl fluoride, and 1 µg of poly(dI-dC). The
concentration of nuclear extract was 2 µg/10 µl in each individual
reaction mixture. Unlabeled competitor was included in some of the
binding reactions as indicated. ~0.1 ng of radiolabeled
double-stranded oligonucleotides (20,000 dpm) were added to each
10-µl reaction mixture, and the incubation was continued for 30 min
at room temperature. 2 µl of loading dye (50% glycerol, 0.01%
bromphenol blue, 1 mM Hepes, pH 7.9) were then added to
each sample. The incubation mixture was loaded on a 5% polyacrylamide
gel (19:1 acrylamide/bisacrylamide) in 1 × TBE buffer (90 mM Tris borate, pH 8.0, 20 mM EDTA). Running
buffer was 0.5 × TBE buffer. Gels were run at +4 °C, after
which they were transferred to Whatman No. 3MM paper, covered with
Saran Wrap, and exposed to Kodak X-AR film for 5-15 h at
70 °C
with intensifying screens.
Three sites within the Promoter Region (+6 to
117) of
Ren-1c Bind Nuclear Proteins from As4.1 Cells
-flanking sequence into two regions: (a) the proximal
promoter, a 123-bp fragment (+6 to
117); and (b) a more
distal segment extending out to
4.1 kb. Within the proximal promoter,
mouse Ren-1 and Ren-2 genes have >99% sequence
identity and ~80% identity with the rat and human renin genes (51,
52). More distal of position
117, interspecific homology between
renin genes decreases significantly. Farther upstream are repetitive
sequences that are unique to the mouse genes and that extend some
500-800 bases, depending upon the particular mouse locus in question,
before homology again resumes with rat or human renin 5
-flanking
sequences.
130), as shown in Fig. 1A. These
oligonucleotides were used as probes in EMSA with nuclear proteins
isolated from As4.1 cells (Fig. 1B). 3 out of 10 oligonucleotides spanning the renin promoter were able to bind nuclear
proteins from As4.1 cells: oligonucleotides 2, 5, and 9, covering
positions
90,
60, and
20, respectively. Judging by the mobility
of these complexes, all three interactions resulted from binding of
different proteins (Fig. 1B).
Fig. 1.
Electrophoretic mobility shift assays with
oligonucleotides derived from the Ren-1c promoter
region (+12 to
130). A, sequences of 10 double-stranded
oligonucleotides (26-mers) overlapping by 13 bp derived from the
Ren-1c promoter region (+12 to
130) are named by
consecutive numbers (1, 2, 3, 4, 5, 6, 7, 8, 9, 10) starting from the
130 end. Positions +1,
60, and
117 and the TATA box on the renin promoter are indicated.
The sequence of the
60 region binding As4.1 cell-specific nuclear
proteins is shown in boldface and is underlined.
B, shown are the results from EMSA with nuclear proteins
from As4.1 cells and oligonucleotides 1-10. C, shown are
the results from EMSA with nuclear proteins from As4.1 and control cell
lines with oligonucleotide 5. The control cell lines were
Ltk
(mouse connective tissue) and SV-T2 (mouse embryonic
tissue), which express SV40 large T antigen. Samples labeled with a
plus sign contained a 50-fold excess of specific competitor;
samples labeled with a minus sign were without competitor.
The arrow indicates the position of the major complex.
and SV-T2. SV-T2 cells express SV40 T antigen, which is also present in
As4.1 cells, due to expression of the transgene. The SV-T2 cell line
was used to control for the possibility that T antigen or some other
gene product induced by T antigen binds to the renin promoter
sequences. Complexes of nuclear proteins from As4.1 cells with
oligonucleotides 2 (position
90) and 9 (position
20) appeared to be
nonspecific for renin-expressing cells since the same complexes were
observed with nuclear extracts from control cell lines (data not
shown). Complexes formed with oligonucleotide 5, which produced a very
strong signal in EMSA (implying relative abundance of proteins binding
to that sequence), are specific for As4.1 cells (Fig. 1C).
Formation of these complexes with nuclear proteins from As4.1 cells
could be effectively competed with unlabeled oligonucleotide 5 (Fig.
1C), suggesting that this interaction is sequence-specific.
Nuclear proteins from SV-T2 and Ltk
cells did not form a
major complex with oligonucleotide 5, as was observed with As4.1 cells
(indicated by arrow in Fig. 1C).
60 Region of the Mouse Ren-1c Gene
Fig. 2.
Competition of 1c-related
oligonucleotides for major complex formation in electrophoretic
mobility shift assays with nuclear proteins from As4.1 cells.
A, shown are the sequences of double-stranded
oligonucleotides related to the Ren-1c
60 region
that were used in EMSA: 1c (mouse Ren-1c
gene sequence), 2d (mouse Ren-2d gene
sequence), HR (human renin gene sequence), and oligonucleotides (M1 to
M6) containing selectively altered bases (indicated by
underlined, lower-case letters). Partial sequences of
oligonucleotides 4 and 6 (given in Fig. 1A) as well as
mutated oligonucleotide 6 (6M) are also shown. B,
oligonucleotides 5 and 6M were used as probes in EMSA without
competitor or competed with oligonucleotides related to 1c,
as indicated. C, EMSAs were performed in which formation of
the major 1c complexes was competed with that of related
1c sequences, as indicated. A 50-fold excess of competitor
over the probe was used. Control samples (
lane) did not
contain competitor.
-end of oligonucleotide
5, which are not present in 1c (Fig. 2A), are
not involved in the formation of the complex.
-end immediately
preceding the A/T-rich sequence (Fig. 2A). This resulted in
strong binding of nuclear proteins to oligonucleotide 6M, and the
resulting complex had the same mobility as oligonucleotide 5 (Fig.
2B). Also, in contrast to oligonucleotide 6, which was an
inefficient competitor for oligonucleotide 5 (Fig. 2B), the
mutated sequence 6M was capable of competing the oligonucleotide 5 complex. The effect of sequence addition to oligonucleotide 6 is most
likely stabilization of the oligonucleotide in its double-stranded
form, although we cannot rule out the possibility that a short
nucleotide stretch (without specific sequence requirement) upstream of
the A/T-rich region is all that is required for stable complex
formation.
-Flanking Region and Proximal Promoter
-flanking fragments
upstream of the basal renin promoter-CAT construct. These were used to
address minimal sequence requirements for initiation of reporter gene
transcription in As4.1 cells in transient transfection assays. When the
123-bp renin promoter in either orientation in the CAT construct was
transfected into As4.1 cells, there was no significant increase in CAT
transcription compared with a promoterless CAT construct.
-flanking fragment (
117 to
4100) to the renin proximal promoter
construct and assayed for induction of CAT activity after transfection
into As4.1 cells. The addition of 5
-flanking sequence from positions
117 to
1800 (Fig. 3, construct d) and
from positions
117 to
2625 (construct e) to the 123-bp
renin promoter did not result in significant increase in CAT activity.
However, the activity of the renin promoter was induced >70-fold in
the As4.1 cells when fragments
117 to
2866 (Fig. 3, construct
f),
117 to
3100 (construct g), and
117 to
4100
(construct h) of Ren-1c 5
-flanking
sequence were added to the renin promoter. High level activation was
also observed in constructs containing truncated forms of the
5
-flanking sequence: fragments
2625 to
4100 (Fig. 3,
construct i) and
2625 to
3100 (construct k).
Since constructs with fragments
2866 to
4.1 (Fig. 3,
construct j) and
2866 to
3100 (construct l)
did not show significant activity in this assay, it was concluded that
the active sequence is positioned on a 241-bp fragment, from positions
2625 to
2866. In combination with the renin promoter, this fragment
retained full activity (Fig. 3, construct m), in an
orientation-independent manner (construct n), typical of
classical enhancers. Furthermore, constructs containing this enhancer
in either orientation correctly initiated transcription from the renin
promoter when analyzed by the RNase protection assay (see Fig. 5).
Fig. 3.
Activation of the renin promoter-CAT reporter
construct by Ren-1c 5
-flanking sequences after
transfection into As4.1 cells. Coordinates for the 5
-flanking
regions of the Ren-1 gene used are given in the upper
left-hand corner. Hatched boxes represent
Ren-1c 5
-flanking sequences. Forward-leaning
diagonals indicate 5
3
orientation, and
backward-leaning diagonals indicate 3
5
orientation.
CAT values are given as percent conversion of chloramphenicol obtained
with 35 µg of transfected cell lysate after correction for
transfection efficiency and are shown as filled bars. Each
value represents the mean ± S.D. of at least three separate
transfections (shown also numerically). -Fold induction with active
constructs relative to the promoter-alone controls is given to the
right.
Fig. 5.
Mapping of the transcription start sites for
transfected renin-CAT constructs in As4.1 cells. A, 30 µg
of total RNAs isolated from nontransfected and transfected As4.1 cells
were analyzed by the RNase protection assay as described under
``Experimental Procedures.'' RNA markers were generated by in
vitro transcription of linearized templates of known sizes using
SP6 RNA polymerase. Minus-RNase and tRNA controls are shown in the
first two lanes. B, shown is a schematic diagram
of the transfected renin-CAT constructs analyzed by the RNase
protection assay. Constructs with the upstream region (
118 to
4100)
in both the forward (
) and reverse (
) orientations relative to
the promoter were examined (fourth and fifth
lanes, respectively). The expected 276-nucleotide (nt)
RNase protection product for correctly initiated transcripts is
depicted below the map.
60 region in the renin
promoter, the A/T-rich sequence was mutated to match mutant M6
(5
-GGCCCTGGGGTAccgAcTCAGAGCAG-3
), which did not compete for proteins
binding with oligonucleotide 1c
(5
-GGCCCTGGGGTAATAAATCAGAGCAG-3
) in EMSA (Fig. 2C). When
4.1 kb of Ren-1c 5
-flanking sequence were placed in
front of the mutated promoter, no induction of CAT transcription above
basal levels was observed (Fig. 4, construct c
versus d). With the 241-bp enhancer and mutated renin promoter
(Fig. 4, construct f), activation was ~4-fold lower than
with the control (enhancer with wild-type promoter) (construct
e), but was still significantly higher than with the mutated
promoter alone (~60-fold) (compare constructs f and
b).
Fig. 4.
Effects of mutations in the A/T-rich region
of the renin promoter on the activity of Ren-1c
5
-flanking sequence-driven CAT reporter gene constructs after
transfection into As4.1 cells. mut boxes represent the renin
proximal promoter (+6 to
117) with mutations within the A/T-rich
60
region. Ren boxes represent the wild-type renin proximal
promoter. Coordinates for the 5
-flanking regions of the
Ren-1 gene used are given in the upper left-hand
corner. Hatched boxes represent
Ren-1c 5
-flanking sequences. CAT values are given
as percent conversion of chloramphenicol obtained with 35 µg of
transfected cell lysate after correction for transfection efficiency
and are shown as filled bars. Each value represents the
mean ± S.D. of at least three separate transfections (shown also
numerically). -Fold induction with active constructs relative to the
promoter-alone controls is given to the right.
2625 and
2866 of the
Ren-1c 5
-flanking sequence is capable of activating
transcription of the renin promoter in the absence of protein binding
at the
60 region, but for the maximal induction of renin
transcription, both sequences are required. On the other hand, activity
of the 4.1-kb fragment is completely dependent on the presence of a
functional A/T-rich region within the renin promoter.
117 to
4100) present in both the forward (
) and reverse (
)
orientations relative to the promoter were used. The expected
276-nucleotide RNase protection product for correctly initiated
transcripts is depicted below the map. RNA prepared from As4.1 cells
transfected with the 4.1-kb 5
-flanking region in either orientation
yielded protected fragments of the predicted size (276 nucleotides) for
mRNA initiating at the major renin transcription start site (Fig.
1A). The initiation site used by transfected Ren-CAT
constructs is the same one found for endogenous Ren-1 and
Ren-2 gene-derived renal transcripts (25).
-flanking
sequence, exon/intron region, and 3
-flanking sequence), correct
tissue- and cell-specific expression was reported (39). Additional
studies by Sola et al. (18), however, showed that the 2.5 kb
of the Ren-2 5
-flanking region were incapable of directing
appropriate expression on their own when linked to SV40 T antigen in
transgenic mice. In contrast, we have demonstrated correct tissue- and
cell-specific expression of both a Ren-2 genomic transgene
and a Ren-2/SV40 large T antigen fusion construct using
larger amounts of 5
-flanking sequence (5.3 and 4.6 kb, respectively)
(3, 19, 38). Taken together, these results suggest that important
tissue- and cell-specific regulatory elements may lie upstream of
2.5
kb in the mouse renin 5
-flanking region and that there may possibly be
some redundancy of information.
-flanking sequences
controlling expression that were first analyzed in transgenic studies,
we have used a kidney-derived cell line (As4.1) that expresses renin
mRNA and protein over long-term culture. To facilitate analysis, we
initially divided the 5
-region upstream of the cap site into a
proximal promoter region extending from positions +6 to
117, which
included the cap site and the TATA box as well as some additional
sequences, and a more distal segment extending to
4.1 kb of the
Ren-1c gene.
117 bp was chosen as a truncation
point of the proximal region because this coordinate lies near the
boundary of the first breakdown in homology evident between renin genes
of different species (51).
90,
60, and
20. The
90 site is a
weak interaction that is not cell-specific; the
60 site is a strong
cell-specific interaction encompassing the A/T-rich region; and the
20 site near the cap site is again not cell-specific. The mouse
Ren-1c
60 region was found to bind nuclear
proteins from mouse kidney (43), and all three sites were detected by
footprint analysis using renin-expressing human chorionic primary cells
(33). Therefore, we examined a series of mutations directed at defining
more precisely the critical sequence requirements for binding at the
60 site. Direct EMSA and competition assays suggest that the minimal
site includes N(1-3)TAATAAATCA.
60 region. The authors suggested the possibility that transcription
factor related to Pit-1/GH-1 (56) could be responsible for binding to
the
60 region in the human renin gene. Although that sequence was
originally identified as a Pit-1/GH-1-binding site, the sequence as
found in the mouse has only partial similarity to Pit-1/GH-1
recognition sequence. Significantly, GC cells (which do not express
their endogenous renin gene), used for transfection experiments by Sun
et al. (35, 36) and Gilbert et al. (37), do
express Pit-1/GH-1. Since the recognition site existing in the renin
promoter shares some homology with a Pit-1/GH-1 site, transcription of
the renin gene may be artificially elevated in these studies.
Double-stranded oligonucleotide containing the human Pit-1/GH-1
sequence did not form complexes with nuclear proteins from As4.1 cells,
nor was it able to compete formation of the major cell-specific
1c complex (data not shown). Furthermore, no mRNA for
Pit-1/GH-1 is detected in As4.1 cells by Northern blot analysis at
moderate stringency.2 There are also other
classes of factors, besides the POU homeodomain protein family (44), of
which Pit-1/GH-1 is a member, that bind A/T-rich sites, such as high
mobility group/high mobility group box proteins (45, 46),
serum-responsive factors (47), and factors related to serum-responsive
factors (myocyte enhancer factors) (48) as well as dispersed
paired-like homeodomain proteins, e.g. MHox (49). Thus,
while the transcription factor affecting regulation of the
Ren-1c gene by binding to the A/T-rich site in As4.1
cells may still belong to the POU homeodomain class family, the precise
identity of this factor is, at present, unknown.
117), alone or in combination with up to 2.5 kb of 5
-flanking sequence. Furthermore, this report has confirmed what
was first suggested with Ren/Tag transgenes, that a regulatory element
located between residues
2600 and
4100 of Ren-1c
functions as an enhancer. When both 4.1 kb of the 5
-flanking sequence
and the promoter region of Ren-1c were included in
renin-CAT reporter gene constructs, the renin promoter was activated
~2 orders of magnitude in renin-expressing As4.1 cells. Further
analysis of the 4.1-kb flanking region resulted in delimitation of the
2625/
2866 region, which retains full activity. This sequence acts
as an enhancer in that it promotes high levels of correctly initiated
transcription independent of its orientation relative to the renin
promoter.
60 region of the promoter, which eliminate
nuclear protein(s) binding to this sequence, completely abolish
activation of reporter gene transcription by the 4.1-kb 5
-flanking
sequence. Activation by the enhancer region was reduced by the same
promoter mutations, but remained significant (60-fold compared with the
promoter alone). Data presented here are consistent with the presence
of negative regulatory element(s) in the Ren-1c
5
-flanking region between positions
117 and
2600. The presence of
potential negative regulatory elements upstream of the mouse
Ren-1d gene has been reported by others previously
(44, 50, 53, 54, 55). The suggested position of these putative element(s)
lies in a region between the enhancer we have identified and the
proximal promoter, consistent with our findings.
*
This work was supported in part by National Institutes of
Health Grants HL35792, HL48459, and CA16056. The costs of publication of this
article were defrayed in part by the
payment of page charges. The article
must therefore be hereby marked
``advertisement'' in
accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
§
Established Investigator of the American Heart Association.
¶
To whom correspondence should be addressed: Dept. of Molecular
and Cellular Biology, Roswell Park Cancer Inst., Elm and Carlton
Streets, Buffalo, NY 14263-0001. Tel.: 716-845-4572; Fax: 716-845-8169;
E-mail: gross{at}acsu.buffalo.edu.
1
The abbreviations used are: kb, kilobase(s); bp,
base pair(s); EMSA, electrophoretic mobility shift assay; CAT,
chloramphenicol acetyltransferase.
2
T. A. Black, unpublished data.
cells, Dr. Daniel F. Catanzaro
(Cornell University Medical College, New York) for helpful discussions,
and Dominic Smiraglia (Roswell Park Cancer Institute) for helpful
discussions and critical reading of the manuscript.
©1996 by The American Society for Biochemistry and Molecular Biology, Inc.
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