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Volume 271, Number 37,
Issue of September 13, 1996
pp. 22647-22656
©1996 by The American Society for Biochemistry and Molecular Biology, Inc.
Structure and Expression of the Murine Muscle Adenylosuccinate
Synthetase Gene*
(Received for publication, March 11, 1996, and in revised form, May 31, 1996)
Amy L.
Lewis
,
Oivin M.
Guicherit
§,
Surjit K.
Datta
§,
Gerri R.
Hanten
§ and
Rodney E.
Kellems
§¶
From § The Verna and Marrs McLean Department of
Biochemistry and the Department of Molecular and Human
Genetics, Baylor College of Medicine, Houston, Texas 77030
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
FOOTNOTES
Acknowledgments
REFERENCES
ABSTRACT
A muscle-specific isoform of adenylosuccinate
synthetase (AdSS1, EC) is one of three enzymes that constitute
the purine nucleotide cycle, a muscle-specific metabolic cycle.
Previously, we showed that the muscle Adss1 gene was highly
expressed in both skeletal muscle and heart of the adult mouse. Here we
have shown that the Adss1 gene is initially activated early
in embryonic development in skeletal muscle and heart precursors and is
subsequently up-regulated perinatally. The earliest detectable gene
expression corresponds with the establishment of the first myogenic and
cardiac lineages. To allow identification of the genetic signals
controlling this developmental pattern of expression, the
Adss1 gene was cloned and its structure determined.
Transgenic analysis has shown that 1.9 kilobase pairs of 5 flank can
activate expression in skeletal muscle progenitors and direct enhanced
expression to adult cardiac muscle. Sequence analysis of the promoter
and 5 flanking region revealed the presence of numerous potential
muscle-specific cis-regulatory elements.
INTRODUCTION
Studies aimed at understanding muscle gene regulation have
traditionally focused on three classes of tissue-specific genes, those
encoding myogenic determination factors, those encoding contractile
proteins, and those encoding enzymes of energy metabolism (1, 2). The
myogenic transcription factors are instrumental in all phases of
myogenesis (commitment, differentiation, and maturation) and as such
are expressed in a very tightly controlled temporal fashion throughout
skeletal muscle and cardiac development (3, 4). Members of the second
class, the contractile proteins, are considered the building blocks of
muscle and cardiac fibers and accordingly do not accumulate until the
onset of myotube formation during the differentiation process (5).
Unlike the myogenic factors, these structural proteins (specifically
the actins and myosins) progressively accumulate throughout the
prenatal and postnatal phases of development, some actually reaching
levels as high as 30% of adult levels at birth. Several embryonic
and/or fetal isoforms disappear around the time of birth, as the levels
of the adult isoforms increase during the initial period of postnatal
development. The third class of muscle-specific genes encodes enzymes
of muscle energy metabolism. These genes are not highly expressed until
late in embryogenesis (i.e. right before birth), after which
the genes are highly up-regulated (20-30-fold) during the first weeks
of postnatal development (6). Consistently, their cognate enzymes are
abundant in adult cardiac and skeletal muscle. For several of these
cardiac and skeletal muscle metabolic genes, it has been demonstrated
that muscle-specific transcripts can be detected at low levels early in
development (7, 8, 9, 10, 11, 12). In fact, earliest detection of muscle-specific
transcripts for the -enolase gene corresponds with the presence of
the first muscle progenitors and the primordial cardiac tube (8). This
suggests that the increased expression of the muscle metabolic genes
during postnatal development is preceded by a basal gene activation
early in embryogenesis. The physiological significance, if any, of this
early activation is not known, and the regulatory sequences that govern
this process have not yet been identified.
We have chosen to focus our attention on understanding the biphasic
expression pattern characteristic of the genes that encode enzymes of
muscle energy metabolism. For this purpose we have been investigating
the muscle-specific isoform of adenylosuccinate synthetase
(AdSS1)1 (13), an enzyme that functions in
the purine nucleotide cycle, along with myoadenylate deaminase and
adenylosuccinate lyase. The deaminase is found in a skeletal muscle and
a cardiac isoform, and one form of the lyase exists in both tissues.
Genetic disorders affecting the purine nucleotide cycle are associated
with specific myopathies and neuromuscular disorders (14, 15). This
metabolic cycle, in conjunction with the myoadenylate kinase reaction,
plays an important role in regulating adenine nucleotide metabolism in
muscle in order to maximize ATP synthesis and utilization
(Fig. 1). The direction of purine nucleotide flow
through the cycle is governed by the physiological state of the muscle
cell. During brief periods of intense muscle contraction, a large
portion of the ADP that is produced is rapidly converted to IMP and
ammonia by the combined action of myokinase and myoadenylate deaminase.
The irreversible deamination of AMP serves to draw the myokinase
reaction in the direction of ATP production, thereby helping to meet
the immediate energy demands of the contracting muscle cell.
Experiments have shown that during brief periods of maximum
contraction, the concentration of IMP increases approximately 20-fold,
reaching levels that exceed 1 mM. Therefore, it is
necessary to have an efficient and properly regulated metabolic pathway
to replenish the adenine nucleotide pool during periods of metabolic
recovery. The return path of the purine nucleotide cycle, which
involves adenylosuccinate synthetase and adenylosuccinate lyase, is
believed to serve this purpose. Increased flux through this part of the
cycle also contributes to the resynthesis of ATP by expanding the pool
of tricarboxylic acid cycle intermediates through the production of
fumarate from aspartate (14, 15). A striated muscle-specific isoform of
adenylosuccinate synthetase, AdSS1, catalyzes the first and
rate-controlling step in this adenine nucleotide replenishment pathway.
We previously showed that the gene (Adss1) encoding this
muscle isozyme is highly expressed in both cardiac and skeletal muscle
in the adult mouse (16). Here we report the cloning and structural
analysis of the murine Adss1 gene, the identification of the
endogenous expression pattern, as well as a functional study of the 5
flanking region in transgenic mice.
Fig. 1.
Schematic representation of the purine
nucleotide cycle as part of adenine nucleotide metabolism in muscle.
PNC, purine nucleotide cycle.
[View Larger Version of this Image (18K GIF file)]
MATERIALS AND METHODS
Genomic Library Screening and Isolation of Phage DNA
To
identify clones containing genomic fragments from the
Adss1 locus, a commercial phage library (LAMBDA FIXII;
Stratagene) was screened with the full-length Adss1
cDNA. The phage library was plated, and duplicate filter lifts were
made according to standard protocol (17). Hybridizations and
autoradiography were performed according to standard procedures (17).
Preparation and digestion of phage DNA was according to standard
protocol (17).
Southern Blot and DNA Dot Blot Analysis
Southern blots of
total genomic and/or phage DNA, utilizing full-length
Adss1 cDNA as a probe, were performed as before (18).
Similar blots utilizing oligonucleotide probes were hybridized and
washed as recommended by the supplier (Bio-Rad) of the nylon membrane
(Zeta-probe). Oligonucleotide probes were end-labeled with
[ -32P]ATP according to standard procedure (17).
Genomic DNA dot blots were performed as described elsewhere (19).
Exon Mapping and Sequence Analysis
Standard restriction
endonuclease digests, cloning techniques, and DNA sequencing were as
described (17). Genomic DNA subfragments were sequenced according to
the dideoxy procedure of Sanger et al. (?). For mapping of
exons polymerase chain reaction (PCR) assays were performed using one
anchor primer with a known location in the vector and exon-specific
primers to determine the distance of the exon from one end of the
subclone. The following cycling conditions were established: 1 min
94 °C, 25-30 cycles at 1 min 94 °C, 1.5 min 50 °C, 3 min
72 °C, 10 min 70 °C, store at 4 °C.
Primer Extension and Ribonuclease Protection Assays
Total
RNA was isolated with RNazol as described (20), and its integrity was
verified by formaldehyde/agarose gel electrophoresis (16). Primer
extensions were performed as described previously (21) using the
end-labeled 30-mer primer described under ``Results.'' The
ribonuclease protection assay is described elsewhere (19). An
[ -32P]UTP-labeled cRNA probe (riboprobe) was
synthesized from the StyI-BamHI genomic fragment
spanning exon 1 of the Adss1 gene (see ``Results'').
Generation of Riboprobes and in Situ Hybridization
Analysis
In situ hybridization to sections was
performed as described (22). Antisense and sense riboprobes were
generated from the Adss1 cDNA. Both probes were
acid-hydrolyzed to an average size of 750 bp for 7 min at 60 °C.
Proteinase K treatment was 8 min at room temperature. Samples were
hybridized overnight at 60 °C and were treated as described (22).
RNase T1 was added at a concentration of 20,000 units. Stringency
washes were performed at 65 °C. Slides were dipped in Kodak NTB-2
emulsion and exposed for 7-14 days. Sections were viewed and
photographed with a Leitz Diaplan microscope (23).
Isolation of RNA and Northern Blot Analysis
Total cellular
RNA from tissues was isolated by the acid guanidine thiocyanate
procedure as described (20), fractionated electrophoretically on a
1.4% denaturing agarose-formaldehyde gel, and transferred to nylon
membranes (GeneScreenPlus, DuPont NEN). Northern blot
analysis was performed as described (17).
Construction of CAT Fusion Genes
Construction of the
Adss/cat fusion genes was based on the backbone vector pSG5
(24). The original rabbit -globin intron II and SV40 polyadenylation
signal remained intact. The CAT cDNA was cloned into the
EcoRI site between the T7 promoter and the polyadenylation
signal. The early SV40 promoter was removed and replaced with a
ScaI-SacI fragment containing 6.2-kb 5 flank of
the Adss1 gene, resulting in the construct 6.2SSCAT. The
construct, 1.9HSCAT, was generated by digesting pSS6.2CAT with
HindIII and NdeI, blunt-ending with T4
polymerase, and religating. The third construct, 1.2XSCAT was removed
from the 1.9HSCAT construct by an XbaI digestion.
Construction of -Galactosidase Fusion Genes
Construction
of the Adss1/lacZ fusion genes was based on the backbone
vector pNAss (24). Briefly, pNAss contained a synthetic intron,
based on SV40 splicing sequences, followed by a -gal cassette and an
SV40 polyadenylation signal sequence. A SacI-SacI
fragment and an EcoRI-EcoRI fragment from phage
clone GAdSS 1-7, spanning 6.2 and 5.0 kb of 5 flanking sequences
of the Adss1 gene, respectively (see ``Results''), were
subcloned into the EcoRI site of pNAss yielding the
constructs 6.2SS and 5.0ES . Subsequently, an
XbaI-XbaI fragment and a
HindIII-HindIII fragment was excised from
6.2SS , resulting in the constructs 1.2XS and 1.9HS , containing
1.2 and 1.9 kb of 5 flanking sequences of Adss1,
respectively. Finally, a 2.1-kb BamHI-HindIII
fragment was subcloned into the HindIII site of 1.2XS to
generate the construct 4.0BH.XS . Cloning procedures and propagation
and CsCl purification of plasmids were according to standard cloning
techniques (17).
Production and Analysis of Transgenic Mice
Fragments
containing either the Adss/lacZ transgenes or the
Adss/cat transgenes were isolated by agarose gel
electrophoresis and further purified by DEAE-52 column chromatography.
Transgenic mice were prepared by injecting the transgenes in fertilized
FVB/N oocytes (25). Transgenic founder animals were identified by
isolating DNA from either tail biopsies of 3-week-old pups or embryonic
yolk sacs and screening for the presence of transgenes by DNA dot blot
analysis (see above). For the constructs 6.2SS and 1.2XS ,
transgenic lines were established. All of the constructs were analyzed
by the F0 transgenic assay.
Tissue Extracts and CAT Assays
Tissues were lysed by
homogenization. Cell debris was removed by a 20-min Microfuge
centrifugation at 4 °C. Protein concentration was determined by the
Bradford method (26). CAT assays were performed as described (19).
Equal amounts of protein were used for each tissue. CAT-specific
activity was determined under conditions of linear rates by removing
reaction aliquots every 5-10 min at 37 °C.
-Galactosidase Staining
Patterns of transgene expression
were analyzed in F0, F1, and/or F2 transgenic embryos. The embryos were
fixed and stained as described (27). For better visualization of the
staining pattern, embryos were cleared in a solution of methyl
salicylate right before pictures were taken.
RESULTS
The Murine Adss1 Gene Consists of 13 Exons Spanning a Region of 45 Kb
A lambda library containing genomic DNA inserts ranging from
10 to 20 kb was screened with a full-length Adss1 cDNA,
encoding the muscle isozyme (16). Four clones containing
Adss1 gene fragments, ranging from 13 to 19 kb, were
isolated. To determine the extent of exon-containing fragments within
the clones and the possible overlap between the clones, restriction
enzyme analyses and Southern blot analyses were performed. The
contig-map of the clones and a restriction map of the
Adss1 locus that resulted from these analyses are shown in
Fig. 2. In order to establish the exon-intron junctions
and map the exons within lambda subclones (Table I),
exon-containing genomic fragments were subcloned and subjected to
sequence analysis. Sequencing was performed with nested oligonucleotide
primers derived from sequence from the Adss1 cDNA. As
listed in Table I, the murine Adss1 gene consists of 13 exons with sizes ranging from 50 to 380 bp. The positions of these
exons within the Adss1 gene was determined via a PCR-based
strategy (see ``Materials and Methods''), with the aid of
exon-specific primers. The 13 exons of the Adss1 structural
gene are estimated to span at least 45 kb. The clones flanking the
Adss1 gene contain sequences that extend by approximately 10 kb on either side of the gene.
Fig. 2.
Structure of the murine Adss1
gene as deduced from clones spanning the gene. Three
overlapping clones ( GAdSS1-2, -1-3, and -1-1) spanning the gene
from exon 2 to the 3 end of the gene were mapped and their overlap
established. An additional clone containing exon 1 ( GAdSS1-7) was
identified, but the overlap with the exon 2-containing clone
( GAdSS1-2) was not established (broken line). Based on
restriction fragment analysis, Southern blot hybridizations, and a
PCR-based strategy, exons 1-13 (black boxes) have been
identified and mapped (see also Table I). The estimated size of each
clone is indicated between parentheses. B,
BamHI; E, EcoRI; H,
HindIII; S, SacI; X,
XbaI.
[View Larger Version of this Image (15K GIF file)]
Table I.
Mapped exons and exon-intron junctions of the murine Adss1
Gene
| Exon |
Position
in open reading frame |
Sequence of exon-intron
junctions
|
Junction + 5 end |
Exon size |
3 end + junction |
|
| 1 |
1-229 |
CTCGCT |
...(228)... |
TGCCAGgtgcg |
| 2 |
230-332 |
ttctagGGGGGC |
...(102)... |
TCATTGgtgag |
| 3 |
333-395 |
ttgcagGCAATG |
...( 62)... |
AGAAAGgtagg |
| 4 |
396-446 |
ctgcagGGCTGA |
...( 50)... |
ACCTTGgtaag |
| 5 |
447-513 |
caccagTGTTCG |
...( 66)... |
GAAGAAgtgag |
| 6 |
514-621 |
tttcagTATCGG |
...(107)... |
TGCCAGgtagg |
| 7 |
622-697 |
gccaagATTCAA |
...( 75)... |
AAAAGGgtaag |
| 8 |
698-830 |
ggtcctCTCAAG |
...(132)... |
ATTTCGgtgag |
| 9 |
831-985 |
cctgcaGGACCT |
...(154)... |
ATCAATgtgag |
| 10 |
986-1110 |
acatagGAAATT |
...(124)... |
CACTGCgtacg |
| 11 |
1111-1207 |
ggacagGCTGGC |
...( 96)... |
TTCCCTggtat |
| 12 |
1208-1357 |
tccacaGCTAAC |
...(149)... |
TTGCAGgtggg |
| 13 |
1358-1738 |
cttcagTCAAAT |
...(380)... |
TCACTG |
|
Cardiac and Skeletal Muscle Utilize the Same Transcription Start
Site
To map the transcription initiation sites at the 5 boundary
of the Adss1 gene, the 500-bp
StyI-BamHI genomic fragment containing exon 1 was
subcloned. The restriction map of this fragment with the relative
position of exon 1 is shown in Fig. 3A. The
subclone was used to generate a uniformly labeled antisense riboprobe
spanning the entire StyI-BamHI fragment across
exon 1. This riboprobe was hybridized to total RNA from several murine
tissues along with total yeast RNA as a negative control. After
treatment with RNase the probe protected a predominant fragment of
approximately 240 bp (Fig. 3B, arrow). Some minor
protected fragments could sometimes be discerned. As expected, the
major protected fragment was highly abundant in the muscle-enriched
tissues (skeletal muscle, esophagus, heart, and tongue), confirming
that the expression of the Adss1 gene is largely restricted
to muscle (Fig. 3B, lanes 2, 7, 11, and
13). Furthermore, both cardiac and skeletal muscle tissues
show an identical protected product (Fig. 3B,
lane 2 versus lane 11) suggesting that both types
of striated muscle tissues utlize the same transcription start site of
the Adss1 gene.
Fig. 3.
Identification of the transcription start
site of the Adss1 gene in striated muscle. A,
restriction map of the StyI-BamHI fragment
containing the proximal 5 flanking region and exon 1 of the
Adss1 gene. The arrow indicates the position of
the 30-bp oligonucleotide used for primer extension analysis. The
fragment was subcloned in the vector pBluescript KS(+) (Stratagene) and
used for generating an antisense cRNA probe (solid line)
used for RNase protection analysis. The ATG start codon and relevant
restriction sites are indicated. B, BamHI;
S, SacI; X, XbaI.
B, for RNase protection analysis a uniformly labeled cRNA
probe of approximately 550 base pairs (see A) was hybridized
to 20 µg of total RNA from relevant mouse tissues. The major
protected product as observed after gel electrophoresis and
autoradiography is indicated by an arrow. Total RNA from
yeast served as a negative control. C, primer extension
analysis was performed with a 30-nucleotide primer described in the
text. For analysis 20 µg of total RNA from each of the relevant mouse
tissues was hybridized with 5 -end-labeled primer. The extended
products were fractionated over a denaturing polyacrylamide gel (6%)
and visualized by autoradiography. The position of the primary product
is indicated by an arrow. Between parentheses is
the estimated size of the product, in base pairs. M, DNA
size markers, in base pairs.
[View Larger Version of this Image (42K GIF file)]
To more precisely map the 5 termini of the Adss1
transcripts, primer extension experiments were performed with a 30-bp
oligonucleotide primer positioned at nucleotides 16 to +14 relative
to the ATG start codon (Fig. 3A). The oligo-probe was
end-labeled and hybridized to similar murine tissue RNA samples as
above and extended by reverse transcription. A major product was
observed (51 bp), which was only present in the muscle tissues,
skeletal muscle, esophagus, heart, and tongue (Fig. 3C,
arrow). Again, minor products were sometimes observed. As
shown with the protection assay, cardiac and skeletal muscle revealed
an identical major extended product, confirming that the same gene is
active in both tissues, producing identical transcripts. Because the
size of the primer extension product could be more accurately sized (51 nucleotides) than the protected fragment from the RNase protection
experiments, we assigned the initiation site according to the extended
products (Fig. 3C, and Fig. 4).
Fig. 4.
Nucleotide sequence of the promoter and
immediate 5 flanking region of the Adss1 gene. The
arrow indicates the major transcription initiation site as
determined by primer extension. The bold regions indicate
matches with consensus sequences for known transcription factors
described in the text. Important restriction enzyme sites are in
italics.
[View Larger Version of this Image (54K GIF file)]
Sequence Analysis of the Promoter and 5 Flanking Region Reveals
Numerous Potential Muscle Regulatory Elements
The 1.9-kb
HindIII-SacI fragment was sequenced and screened
for potentially important cis-elements (Fig. 4). The region
upstream of the transcription initiation site is very G/C-rich with an
overall G + C content of 69%, within 200 bp of the transcription
start. This region contains a TATA box-like element (28) within 25-30
bp upstream of the start site, an organization that is usually observed
in TATA box-containing eukaryotic genes. In addition, the sequence
spanning the transcription start matches the consensus for the
initiator element (29) that is often observed for eukaryotic genes.
Other potentially important skeletal muscle or cardiac regulatory
elements are noted.
Expression of the Murine Adss1 Gene Is Developmentally
Regulated
Northern (16) and Western (13) analyses have
established that Adss1 RNA and protein, respectively, are
restricted to adult striated muscle tissues, where they are present at
relatively high levels. Little is known about the developmental timing
of expression of the Adss1 gene. In order to determine the
expression pattern of Adss1 at the level of transcription,
total RNA from mouse muscle tissue at later stages of development was
collected and subjected to Northern blot analysis. The results show
that Adss1 transcripts are virtually undetectable in day 13 and day 16 embryos (Fig. 5, lanes 5 and
4). After birth, however, the Adss1 message is
clearly present (Fig. 5, lane 3) and significantly
up-regulated during further postnatal development. After long term
exposure of similar Northern blots, the Adss1 transcript was
also detectable, albeit at very low levels, in skeletal muscle of day
16 embryos.2 These results suggest that the
expression of the Adss1 gene is highly up-regulated
perinatally and that this regulation most likely takes place at the
level of transcription.
Fig. 5.
Northern analysis of total RNA from mouse
skeletal muscle at different stages of development. Total RNA (30 µg) from mouse muscle tissue was fractionated on a denaturing 1.4%
agarose gel and transferred to a nylon membrane. The Northern blot was
probed with the Adss1 cDNA. The stages of development
are listed above each lane. The ribosomal RNA markers
(18 S, 28 S) are included for size reference and were
visualized by ethidium bromide staining prior to and following blot
transfer to ensure equal loading and efficient transfer of RNA.
[View Larger Version of this Image (51K GIF file)]
The Adss1 Gene Is Activated in Skeletal Muscle and Heart
Progenitors Early in Embryonic Development
To determine whether
the Adss1 gene is expressed during early development,
embryos were collected at various developmental points, and in
situ hybridization analysis was performed. The heart develops from
a discreet mesodermal lineage, the splanchnic mesoderm. 8-9 d.p.c. is
the point in cardiac development when the inactive primordial
endocardial tubes fuse in the central pericardial cavity to form a
beating linear heart tube (30, 31). Earliest expression of
Adss1 transcripts was detected in the atrial and ventricular
walls of the developing heart in 9.5 d.p.c. embryos
(Fig. 6A). No signal above background was
detected with sense riboprobes (data not shown). Cardiac expression
increases through 10.5 and 13.5 d.p.c., becoming clearly visible
in both the atrium and ventricle walls (Fig. 6, C and
D). Thus, the Adss1 gene is expressed during
cardiogenesis as the embryonic heart develops and begins to
function.
Fig. 6.
Adss1 transcripts are expressed in
murine skeletal muscle progenitors. A, cross-section of a
9.5-d.p.c. embryo showing Adss1 expression in the atrium
(a) and ventricle (v) of the newly formed heart.
Negative structures are hindbrain (h) and foregut
(f). B, transverse section of a 9.5-d.p.c. embryo
showing expression in caudal somites (s). Other structures
are neural tube (n), peritoneal cavity (p), and
midgut (m). C, sagittal section of a 10.5-d.p.c.
embryo showing Adss1 transcripts in the developing myotome
(my), atrium (a), ventricle (v), and
liver (l). No signal is seen in the branchial arch
(b) or the dorsal root ganglion (d).
D, sagittal section of a 13.5-d.p.c. embryo showing signal
in the body wall muscle (bm), tongue (t),
atrium (a), ventricle (v), liver (l),
and developing neck and facial muscles (asterisk). Bar
A, 100 µm for panels A and B. Bar C, 100 µm for panels C and D.
[View Larger Version of this Image (128K GIF file)]
Somites are the earliest structures currently identifiable as muscle
precursors that develop from the dorsal mesoderm in a rostral to caudal
gradient beginning at approximately 8.0 d.p.c. (3).
Adss1 RNA was detected in caudal somites on either side of
the neural tube in 9.5 d.p.c. embryos (Fig. 6B).
Expression patterns in a 10.5-d.p.c. embryo illustrate myoblast
migration away from the somite and initial myotube fusion as formation
of thoracic body wall muscle begins in the developing myotome (Fig.
6C). At 13.5 d.p.c., Adss1 transcripts were
readily detected in the developing intercostal body wall muscles (Fig.
6D). Expression was not seen by 10.5 d.p.c. in the head
mesenchyme and branchial arches that give rise to the mandibular and
facial muscles and tongue, respectively (Fig. 6C). However,
by 13.5 d.p.c. the signal was clearly present in the muscle of the
newly formed tongue and in the facial and mandibular muscles (Fig.
6D). These data show Adss1 is activated early in
embryonic development at the time when skeletal and head
muscle-specific lineages are established and maturing.
Low levels of Adss1 transcripts were detected in the livers
of 10.5- and 13.5-d.p.c. embryos (Fig. 6C and
6D), a finding consistent with low levels of
Adss1 expression in the adult tissue (16). Low
Adss1 expression was also observed in the midgut at 9.5 d.p.c. (Fig. 6B).
5 Flanking Sequences of Adss1 Target Cardiac Muscle Expression in
Transgenic Mice
To determine if important regulatory elements
lie upstream of the promoter region, various amounts of the 5 flanking
region of the Adss1 gene were fused to the bacterial
chloramphenicol acetyltransferase (CAT) gene and were tested in adult
transgenic mice. In 6.2SSCAT and 1.9HSCAT transgenic mice, CAT
expression was consistently highest in the heart (Fig.
7A, lane 2). Lower levels of expression were
noted in skeletal muscle tissues. However, when the 1.2XSCAT construct
was tested, muscle-specific enhancement was abolished. Fig.
7B depicts an average and quantitation of multiple
experiments. The results show that this 1.9-kb fragment consistently
directs very high levels of transgene expression specifically to
cardiac tissue. All 1.9HSCAT muscle tissues expressed higher levels of
reporter activity than the 6.2-kb parent construct. This may be
attributed to the loss of a negative regulatory element in the deletion
construct. Low level expression was noticed in the spleen and thymus
consistently for all three constructs (Fig. 7A, lanes
9 and 10). We speculate that this expression could be
controlled by multiple transcription factor binding sites present
around the start site. The overall results suggest, however, that
sequences necessary for high levels of adult heart expression lie
within 1.9 kb of 5 flank, with a critical region lying within the
700-bp HindIII-XbaI fragment.
Fig. 7.
5 flanking sequences of Adss1
target cardiac muscle expression in adult transgenic mice.
A, representative CAT assays for the three constructs shown
in panel B. 6.2SSCAT showed
cardiac-specific enhancement in 5/5 transgenic animals;
1.9HSCAT showed cardiac-specific enhancement in
3/4 animals; and 1.2XSCAT showed no expression in
2/2 animals. B, schematic representation of the CAT
transgenes, containing various amounts of the Adss1 5
flanking region. Relevant restriction sites are shown, and the
transcription initiation site is indicated. CAT activities are
expressed as pmol of chloramphenicol acetylated per min/mg
protein/transgene copy number. I1, -globin intron II.
CAT, chloramphenicol acetyltransferase reporter.
pA, SV40 polyadenylation signal. S,
SacI; H, HindIII; X,
XbaI. Tissues examined were skeletal muscle
(SK M), heart (HT), tongue
(TO), esophagus (ESO), kidney (KY),
liver (LIV), small intestine (SM I),
stomach (STO), spleen (SPL), thymus
(THY), and bladder (BL).
[View Larger Version of this Image (31K GIF file)]
5 Flanking Sequences of Adss1 Also Activate Expression in Skeletal
Muscle Precursors
In order to determine whether the 5 flank also
controls gene expression in muscle progenitors during prenatal
development, Adss1/lacZ fusion constructs were generated and
tested. Because of histochemical detection capabilities, the
lacZ reporter is well-suited for prenatal expression
analysis. All transgenic mice contained multiple copies of the
construct, ranging from 5 to 70 copies. Multiple embryos of varying age
were analyzed for -galactosidase expression by whole mount
5-bromo-4-chloro-3-indolyl -D-galactoside staining.
Staining was clearly visible by 9.0 d.p.c. in the somites of
6.2SS transgenic mice (Fig. 8). By 11.5 d.p.c.
the staining of the thoracic somites had extended well into the trunk
area, presumably reflecting precursors of body wall muscle. -Gal
activity was also detected in the forelimb buds, neck, and facial
areas. From about 14 d.p.c., the staining was very strong in the
tongue and the peripheral musculature of the embryo. This pattern
reflected the endogenous skeletal muscle pattern of Adss1
expression delineated by in situ analysis. Two deletion
constructs 5.0ES (data not shown) and 1.9HS , containing 5.0 and
1.9 kb of 5 flank of Adss1, respectively, reproduced the
staining pattern of the parent 6.2SS construct. Of the three lines
containing the 1.2XS construct, none of the embryos showed any
detectable -gal activity. Since this was the case for multiple
lines, it most likely reflects the inability of the transgene to
properly function, rather than the effect of chromosomal integration
site(s) on the transgene. A final construct, 4.0BH.XS , which
contained 4.0 kb of 5 flank with a 700-bp deletion from the
HindIII site to the XbaI site, also showed no
expression in multiple transgenic embryos (data not shown). The data
above show that the 1.9-kb 5 flank of the Adss1 gene
contains regulatory sequences that are able to properly target skeletal
muscle progenitors.
Fig. 8.
5 flanking sequences of Adss1
have the ability to activate reporter gene expression in muscle
progenitors in transgenic embryos. A, schematic
representation of the lacZ transgenes, containing various
amounts of the Adss1 5 flanking region. Relevant
restriction sites are shown, and the transcription initiation site is
indicated. Stippled box, Adss1 5 flank; dark stippled
box, SV40 intron 1; white box, -galactosidase
reporter; dotted box, SV40 polyadenylation signal.
Asterisk indicates that the animals that were identified as
transgenic had copy numbers greater than 5 to allow for proper
expression of the transgene. Sc, ScaI;
E, EcoRI; P, PvuII;
B, BamHI; H, HindIII;
X, XbaI; Xh, XhoI;
St, StyI; S, SacI.
B, 6.2SS transgenic embryo stained at 9.5 d.p.c.
Expression is clearly localized to the somites. C, 6.2SS
transgenic embryo stained at 11.5 d.p.c. Transgene expression is
expanding into the developing myotome. D, 6.2SS
transgenic embryo stained at 14 d.p.c. -Gal staining is
apparent in the skeletal muscles extending through the body, in the
facial musculature, and in the tongue (black arrowhead).
E, 1.9HS transgenic embryo stained at 11.5 d.p.c.
Expression again is localized to the developing myotome and faint
expression can be seen in the atrium of the heart (white
arrow).
[View Larger Version of this Image (49K GIF file)]
Surprisingly, -gal activity was not detected in the heart of the
6.2SS transgenics at any time during development, but faint staining
was noticed in cardiac tissue of 11.5 d.p.c. 1.9HS transgenic
mice (Fig. 8E, white arrow). This difference is
consistent with the ability of the 1.9HSCAT construct to drive higher
expression than the 6.2SSCAT construct in adult heart. This faint
cardiac expression could be attributed to a penetration problem of the
X-gal.
DISCUSSION
Cloning and Structural Analysis of the Murine Adss1
Gene
Previous studies have established that the muscle isozyme of
AdSS as well as its cognate transcript are predominantly expressed in
striated muscle tissues (16, 13). We report here the molecular cloning
and structural analysis of the murine Adss1 gene. We defined
13 exons with their respective intron/exon boundaries and mapped these
exons along four lambda clones, which span about 45 kb. Sequence
analysis of the proximal 5 flanking sequence of Adss1
revealed an organization of cis-elements around the
transcription start that is commonly observed for eukaryotic genes
(32). In addition, we identified several putative binding sequences for
known muscle-specific transcription factors. The messages expressed in
both cardiac and skeletal muscle showed identical 5 ends, suggesting
that in the adult the same Adss1 transcripts are expressed
in both types of striated muscle tissue. This is unlike the muscle
structural proteins, which are commonly encoded by separate cardiac and
skeletal muscle-specific genes (5, 33). Another scenario is seen with
the aldolase A gene in which separate promoters, pM and pH, direct gene
expression to skeletal muscle and cardiac tissues, respectively (34).
However, the Adss1 gene appears to utilize separate
cis-regulatory elements for tissue-specific expression of a
single promoter in the heart and skeletal muscle (see below).
Endogenous Expression of Adss1 During Mouse
Development
Adss1 gene expression is developmentally
controlled, being activated prenatally around the time of establishment
of the first myogenic and cardiac lineages and then significantly
up-regulated perinatally, with a pronounced increase in gene expression
during postnatal development. In situ analysis revealed the
presence of Adss1 transcripts in 9.5-d.p.c. caudal somites
as well as the atrium and ventricle walls of the beating linear cardiac
tube. Expression was detected throughout embryonic development (10.5 and 13.5 d.p.c.) in the maturing muscles, heart, and tongue.
Perinatally, an apparent phase of enhancement of Adss1 was
identified, which correlates with increased skeletal muscle usage.
Expression gradually increased until it reached adult levels around the
time of weaning. Therefore, Adss1 is present in the earliest
muscle precursors and is subject to developmental up-regulation in
mature, functional muscle.
Other muscle genes encoding metabolic enzymes, such as -enolase and
creatine kinase, which are generally highly expressed in the adult, are
active prenatally, at very low or basal levels (7, 8). Adss1
expression pattern resembles that of the -enolase gene, as the
muscle-specific gene is activated early in embryonic development and
continues to be expressed in adult muscle tissues (8). This differs
from another metabolic gene, creatine kinase, where the expression of
the nonmuscle gene precedes that of the muscle-specific gene in
prenatal development (7). Since the heart is beating around 9.0 d.p.c. and fetal movement can be detected, it is not unreasonable that
the purine nucleotide cycle may be functioning in these tissues to aid
in energy metabolism. Whether these muscle metabolic genes are
functionally important during embryonic development or whether, at the
time of commitment, all muscle genes are basally activated are issues
that remain largely unsolved. In this regard, one purine nucleotide
cycle enzyme, myoadenylate deaminase, is not critical for prenatal
development since individuals lacking this enzyme are born with no
apparent developmental abnormalities (14).
Regulation of Adss1 in Adult Cardiac Muscle
The results of
our transgenic studies indicate that cardiac elements reside in the 1.9 kb of 5 flanking DNA and are distinct from skeletal muscle regulatory
elements. 1.2 kb of flank showed no tissue-specific enhancement.
Therefore, the 700-bp HindIII-XbaI fragment
appears to contain regulatory sequences that are needed for strong
enhancement in adult cardiac tissue. Sequence analysis of this 700-bp
fragment revealed potential cardiac transcription factor binding sites.
GATA-4 sites may function in series to regulate the expression of
several cardiac-specific genes (35). The MEF2 factor also regulates
several cardiac-specific genes through its MADS domain (36). The E
boxes could possibly bind the newly discovered cardiac bHLH factors,
e/dHAND (37). Finally, the loss of the homeobox-containing Tinman
protein disrupts cardiac development, but the target genes controlled
by this factor are still unknown (31, 38). Mutational analysis of this
fragment is required to delineate the sites that control cardiac gene
expression.
Transgenic Expression in Skeletal Muscle Progenitors
Further
analysis of the 5 flanking region using a lacZ reporter
revealed the ability to direct expression to embryonic skeletal muscle
progenitors, specifically. Constructs containing only 1.9 kb of 5
flank produced whole mount embryo staining patterns that reproduced the
endogenous prenatal Adss1 in situ pattern in somites from
9.5 d.p.c. and tongue from 13 d.p.c. 1.2 kb of flank did not
express in transgenic embryos and neither did 4.0 kb of flank with an
internal deletion. We conclude that we have initially identified a
700-bp fragment that contains regulatory elements necessary for gene
activation in skeletal muscle progenitors.
This Adss1 fragment also contains several potential skeletal
muscle regulatory elements, specifically a MEF2 site and a group of
four E boxes (Fig. 4). The timing and pattern of transgene expression
are almost identical to that observed for the myogenic transcription
factor myogenin (39, 40). Transcripts for myogenin appear in the
myotome at approximately 8.5 d.p.c. This is the first bHLH factor
that is detected in skeletal muscle development in the mouse;
therefore, it could play a role in activating Adss1
expression. Another potential regulatory element present in the 700-bp
fragment is an MEF2 binding site. This factor can interact with the
MyoD bHLH family to regulate the expression of various skeletal muscle
genes (41). These genetic elements (E boxes and MEF2 site) could
possibly play a role in controlling the expression of Adss1
in both cardiac and skeletal muscle tissue, either by binding different
factors or by using different combinations of the sites. An example of
such complex regulation occurs as the muscle creatine kinase gene is
expressed in both striated muscle tissues and utilizes the same 200-bp
enhancer. However, elements within this enhancer are differentially
used in each tissue (33). Further analysis will decipher which sites
play a role in skeletal muscle versus cardiac regulation of
the murine Adss1 gene.
Little is known about the molecular mechanisms involved in regulating
the perinatal enhancement of skeletal muscle metabolic genes. Our
analysis of the 5 flanking region of the Adss1 gene has
identified a 700-bp fragment that contains elements required to
activate reporter gene expression in embryonic skeletal muscle
progenitors but unable to continue expression into adult muscle
tissues. Information about elements that control the enhancement of
muscle metabolic genes in transgenic animals is lacking. Studies in
either skeletal muscle established lines or primary muscle cells have
revealed limited information, but it is becoming more apparent that the
elements necessary for gene activation are separate from the elements
that control enhancement during development. One element in the desmin
gene confers high levels of transgene expression in myoblasts, whereas
a separate element controls expression in myotubes (42). An enhancer in
the -enolase gene allows high levels of expression in myoblasts, but
its activity declines in myotubes (43). Our transgenic results suggest
that the regulatory elements required for postnatal enhancement of the
Adss1 gene in skeletal muscle lie outside of the immediate
1.9 kb of 5 flank and are separate from the elements required for
prenatal activation. Unraveling the mechanism(s) by which the
early-activation regulatory elements function in the Adss1
gene could teach us more about processes that take place at the time
that cells are committed to a myogenic lineage.
FOOTNOTES
*
This work was supported by National Institutes of Health
Grant GM42436, Robert A. Welch Foundation Grant Q-893, and a grant from
the Muscular Dystrophy Association. Nucleic acid sequencing and
synthesis, provided by core facilities at Baylor College of Medicine,
were supported by Baylor Mental Retardation Research Center Grant 2 P30
HD24064. The costs of publication of this
article were defrayed in part by the
payment of page charges. The article
must therefore be hereby marked
``advertisement'' in
accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
The nucleotide sequence(s) reported in this paper has been submitted to the GenBankTM/EMBL Data Bank with accession number(s) U62127[GenBank].
¶
To whom correspondence should be addressed. Tel.:
713-798-4572; Fax: 713-796-9438; E-mail: rkellems{at}bcm.tmc.edu.
1
The abbreviations used are: AdSS1,
adenylosuccinate synthetase; bHLH, basic helix-loop-helix; PCR,
polymerase chain reaction; CAT, chloramphenicol acetyltransferase;
-gal, -galactosidase; X-gal,
5-bromo-4-chloro-3-indolyl- -D-galactopyranoside; kb,
kilobase pair(s); bp, base pair(s); d.p.c., days postcoitum.
2
A. L. Lewis, O. M. Guicherit, S. K. Datta, G. R. Hanten, and R. E. Kellems, unpublished observations.
Acknowledgments
We are grateful to Dr. John Winston and Dr.
Paul Overbeek for assisting us in the generation of transgenic mice. We
also thank Dr. Gregor Eichele and Dr. Stephen Elledge for use of their
equipment for the in situ analysis and Dr. Michael Blackburn
and Calvin Wong for their assistance with the in situ
analysis.
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