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(Received for publication, May 1, 1996, and in revised form, June 27, 1996)
From the Laboratory of Molecular Embryology, NICHD, National
Institutes of Health, Bethesda, Maryland 20892-2710
We have examined the determinants of the
translational repression of mRNA by the Xenopus
oocyte-specific Y-box protein FRGY2 using in vitro and
in vivo assays. In vitro reconstitution of
messenger ribonucleoprotein (mRNP) complexes demonstrates that the
sequence-specific RNA-binding cold shock domain is not required for
translational repression, whereas the RNA-binding C-terminal tail
domain is essential. However, microinjection of reconstituted mRNPs
into Xenopus oocytes demonstrates that although
translational repression occurs in the absence of consensus RNA binding
sequences for FRGY2, the presence of FRGY2 recognition elements within
mRNA potentiates translational repression. Analysis of the in
vivo assembly of mRNP shows that the cold shock domain alone is
not stably incorporated into mRNP, whereas the C-terminal tail domain
is sufficient for stable incorporation. We suggest that translational
repression of mRNA by FRGY2 is favored by sequence-selective
recognition of RNA sequences by the cold shock domain. However,
translational repression in vitro and the assembly of mRNP
in vivo requires the relatively nonspecific interaction of
the C-terminal tail domain with mRNA. Thus two distinct domains of
FRGY2 are likely to contribute to translational control.
Translational control of gene expression is particularly important
during early metazoan development (Davidson, 1986 In Xenopus laevis, two major proteins, mRNP3 and mRNP4, are
associated with maternal RNA in the storage ribonucleoprotein particles
(mRNPs)1 of mature oocytes (Darnbrough and
Ford, 1991; Murray et al., 1991 An active role for FRGY2 in masking mRNA is suggested from several
independent experiments. The reconstitution of FRGY2 with mRNA
in vitro represses translation (Richter and Smith, 1984 The FRGY2 protein has a modular structure containing an amino
(N)-terminal nucleic acid binding cold shock domain (CSD) that is
conserved between prokaryotic and eukaryotic organisms (Wolffe, 1994 In this work we have explored the determinants of translational
repression by FRGY2. We make use of in vitro reconstitution
of FRGY2 interactions with mRNA and in vitro translation
to demonstrate a major role for the tail domain in this translational
repression. We establish that FRGY2 can bind selectively to specific
sequences in vivo, but find that although this selectivity
augments translational repression, it is not essential for the
translational repression of mRNA following injection of naked
mRNA or reconstituted mRNPs into the Xenopus oocyte.
Finally, we examine the role of the individual domains of FRGY2 in the
assembly of mRNP in vivo. We find that the tail domain is
essential for the stable incorporation of exogenous FRGY2 into mRNPs.
Our results provide evidence for an essential role for the tail domain
in stabilizing the interaction of FRGY2 with mRNA in
vivo and in directing the translational repression of mRNA
in vitro.
Plasmid DNAs pSY2WT, -PM1, -D4, -D6, and -CSD used
to synthesize the flag epitope-tagged FRGY2 mRNA for microinjection
were constructed as follows. DNA fragments encoding the FRGY2 cDNA
were produced by polymerase chain reaction amplification using Vent DNA
polymerase (New England Biolabs Inc.) with oligonucleotide primer sets
of K28 (5 Histone H1 cDNA was cloned by polymerase chain reaction from
X. laevis genomic DNA using the primers
5 GST-fusion FRGY2 protein, its derivatives, and GST
protein were expressed in Escherichia coli and purified as
described previously (Bouvet et al., 1995 The capped histone H1 mRNA was
synthesized by SP6 RNA polymerase transcription from
EcoRI-linearized pSP H1.11 (Bouvet and Wolffe, 1994 In vitro
transcription reactions to obtain capped mRNA with poly(A) tail for
microinjection were performed with EcoRI-linearized plasmids
by SP6 RNA polymerase as described previously (Krieg and Melton, 1984 Microinjection into Xenopus stage VI oocytes were performed
as described previously (Almouzni and Wolffe, 1993 In vitro mRNP reconstitution was performed as described by
Richter and Smith (1984) To analyze proteins synthesized in oocytes, 0.8 µCi of
[3H]lysine and 0.16 µCi of [3H]arginine
were injected into oocytes. Acid-soluble proteins were prepared as
described previously (Bouvet and Wolffe, 1994 RNA was isolated from oocytes using RNAzol (Tel-Test, Inc., Austin,
TX), and primer extension analysis was performed as described (Toyoda
and Wolffe, 1992 Oocytes were injected with
32P-labeled RNA, and at 90 min after injection the oocytes
were homogenized in 10 mM Tris-HCl pH 7.5, 100 mM KCl, 1 mM MgCl2, 0.1 mM CaCl2, 50 mM sucrose, and 1 mM phenylmethylsulfonyl fluoride (Bouvet and Wolffe, 1994 Oocytes were
injected with 10 ng/oocyte mRNA encoding FRGY2 or its derivatives
and harvested at 18 h after injection. Fifty oocytes (no
injection) or 25 oocytes injected with mRNA were homogenized in 220 µl of buffer A (20 mM Hepes pH 7.4, 0.3 M
KCl, 0.05% Nonidet P-40, 0.25 mM phenylmethylsulfonyl
fluoride, 50 µg/ml leupeptin, and 50 µg/ml aprotinin). Two hundred
µl of the sample was loaded on a 15-60% glycerol density gradient
in buffer A and centrifuged at 35,000 rpm in Beckman SW50.1 rotor for
13 h at 4 °C. The gradient was collected in 26 fractions from
the top.
Endogenous FRGY2 was detected by Western blotting with anti-FRGY2
antibody (Tafuri and Wolffe, 1992 RNA was isolated from each fraction by phenol-chloroform extraction and
ethanol precipitation. RNA from each fraction was resolved in a 1%
agarose gel containing formaldehyde. The RNA was transferred to
Zeta-probe blotting membrane (Bio-Rad), and histone H1 cDNA was
used as the probe to detect its mRNA.
Earlier
work has clearly shown that proteins now known to be of the Y-box
family (Spirin, 1994
It has been suggested that FRGY2 must be phosphorylated in order to
efficiently repress translation in vitro (Kick et
al., 1987 In earlier work we defined the RNA binding characteristics of the CSD
and tail domains (Bouvet et al., 1995 We find that the WT, PM1, and D6 proteins repress translation of
histone H1 mRNA at an excess of 45 pmol of protein to 1 pmol of
mRNA (Fig. 3, lanes 1-7). In contrast,
the same excess of the D4 or CSD proteins do not significantly
influence the translation of H1 mRNA (Fig. 3, lanes
9-14). We suggest that in this assay the sequence-selective CSD
domain does not have an essential role in inhibiting translation. In
contrast, proteins that retain the tail domain (WT and PM1) or that
consist of only the tail domain (D6) can repress translation. We
suggest that translational repression reconstituted by FRGY2 in
vitro will be sequence-independent, and we next explored whether
this might also be true in vivo.
In earlier work we defined a specific RNA
sequence recognized by FRGY2 protein (Bouvet et al., 1995 Radiolabeled in vitro-transcribed RNA that contained a YRS
or a mutant YRS (M3/4-1, see Bouvet et al., 1995
Our next experiments explored the role of sequence-selective
recognition of mRNA in translational repression. H1 mRNA that
contained or did not contain a YRS immediately 5
Expression of FRGY2 in somatic cells or oocytes facilitates
the translational repression of mRNA synthesized in vivo
(Ranjan et al., 1993 We expressed wild type FRGY2 and the various mutants in oocytes (Fig.
6) and determined their nuclear or cytoplasmic location
in the oocyte. Without exception, the wild type FRGY2 and the mutant
proteins accumulated in the cytoplasm (Fig. 7,
lanes 1-12). Control experiments using histone H4 and H1
demonstrated the preferential localization of these proteins in the
nucleus (Fig. 7, lanes 13-20). Note that the
Xenopus oocyte nucleus has 1/10 of the volume of the
cytoplasm (Dingwall and Allan, 1984 We next examined whether the wild type FRGY2 protein or epitope-tagged
mutant proteins would be incorporated into mRNP in vivo. We
microinjected mRNA encoding the various proteins into oocytes and
examined their association with various RNP complexes fractionated on
glycerol gradients (Fig. 8). Only the wild type FRGY2
protein and the tail domain (D6) are found in the mRNP fraction,
presumably in direct association with RNA. The N terminus of FRGY2
including the CSD (D4) is not found in the mRNP fraction and
surprisingly neither is PM1 containing a mutant CSD and an intact tail
domain. Both the intact CSD and the tail domain must be required for
the stable association of FRGY2 with RNA in vivo. Our
results also demonstrate that a determinant of cytoplasmic localization
for FRGY2 and mutants is not the capacity of the proteins to be
incorporated into mRNP. An unknown mechanism tethers these highly basic
proteins in the cytoplasm.
Our final experiments examined whether expression of the mutant FRGY2
proteins would enhance or interfere with the translational repression
of histone H1 mRNA synthesized in vivo. In agreement
with earlier work (Bouvet and Wolffe, 1994 We find that the determinants of translational repression depend on the
assay system used to reconstitute complexes of FRGY2 and mRNA.
In vitro reconstitution (Richter and Smith, 1984 We thank Philippe Bouvet for
constructing SP6.H1 + YRS and pSPB4, Lita Freeman for providing pH4NF,
Cathy Jozwik for reading the manuscript, and T. Vo for typing the
manuscript.
Volume 271, Number 37,
Issue of September 13, 1996
pp. 22706-22712
©1996 by The American Society for Biochemistry and Molecular Biology, Inc.
ROLE OF THE COLD SHOCK DOMAIN, TAIL DOMAIN, AND SELECTIVE RNA
SEQUENCE RECOGNITION*
,
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS AND DISCUSSION
FOOTNOTES
Acknowledgments
REFERENCES
; Spirin, 1966
, 1994
).
The molecular mechanisms that determine the translational repression
(masking) of maternal mRNA are only partially defined. Much
attention has focused on the role of regulated polyadenylation of
mRNA as a means of controlling translation in the
Xenopus oocyte (Jackson and Standart, 1990
; Standart, 1992
;
Wickens, 1992
; Wormington, 1994
). Cytoplasmic adenylation of mRNA
has a major role in the activation (unmasking) of particular maternal
mRNAs on oocyte maturation (Wickens, 1992
). An additional
contribution to translational repression derives from the packaging of
maternal mRNA with RNA-binding proteins including the Y-box
proteins (Standart and Jackson, 1994
; Wolffe, 1994
).
). These proteins associate
both with mRNAs that are translated in the oocyte and with
mRNAs that are masked (Tafuri and Wolffe, 1993
). mRNP4 is identical
to frog Y-box protein 2 (FRGY2), and mRNP3 shares more than 80%
identity with FRGY2 (Murray et al., 1992
; Tafuri and Wolffe,
1990
). The FRGY2 protein was originally identified as an
oocyte-specific transcription factor that associates with the Y-box, a
regulatory element found in the promoters of genes that are selectively
active in oocytes (Tafuri and Wolffe, 1990
, 1992
; Wolffe et
al., 1992
). Thus FRGY2 might be an example of a multifunctional
protein capable of associating with DNA and RNA, comparable to the role
of TFIIIA in the synthesis and storage of 5 S rRNA (Wolffe and Brown,
1988
).
;
Kick et al., 1987
). Expression of FRGY2 in somatic cells
leads to both an increase in mRNA accumulation from promoters
containing a Y-box and the translational silencing of that mRNA
(Ranjan et al., 1993
). Overexpression of FRGY2 in the
Xenopus oocyte facilitates the silencing of mRNA
synthesized in vivo (Bouvet and Wolffe, 1994
). Antibodies
that bind the FRGY2 family of proteins relieve the inhibition of
translation when introduced into a Xenopus oocyte (Braddock
et al., 1994
; Gunkel et al., 1995
).
).
The CSD consists of a five-stranded
-barrel containing a well
characterized RNA binding motif RNP-1 (Schindelin et al.,
1993
; Schnuchel et al., 1993
; Landsman, 1992
; Burd and
Dreyfuss, 1994a
, 1994b
). The CSD confers sequence-specific RNA
recognition to the FRGY2 protein (Bouvet et al., 1995
). The
carboxyl (C)-terminal tail domain of FRGY2 also interacts with RNA
(Murray, 1994
). However, this interaction shows no apparent sequence
selectivity (Bouvet et al., 1995
). The C-terminal tail
domain contains islands of basic/aromatic amino acids and of acidic
amino acids containing sites of phosphorylation (Tafuri and Wolffe,
1990
; Sommerville, 1992
). Phosphorylation of FRGY2 has been implicated
in the repression of translation (Kick et al., 1987
; Murray
et al., 1991
).
Plasmids
AATTTGAATTCA AGCTTAAAGATGAGTGAGGCGGAAGCCCAGGAG3
for WT, PM1,
and D4), K29 (5
AAT TTGAATTCAAGCTTAAAGATGGGAGGGGTCCCAGTTAAAG3
for D6), or K30 (5
AAT TTGAATTCAAGCTTAAAGATGAAGAAAGTGCTGGCCACTCAA3
for
CSD) and either K33
(5
TCCCCCGGGTCTAGATCACTTGTCATCGTCGTCCTTGTAGTCTTCTGGGGCAGG TGTATCTGC3
for WT, PM1, and D6) or K34 (5
TCCCCCGGGTCTAGATCACTTGTCATC
GTCGTCCTTGTAGTCTGGGCCCGTCACATTGGCCGCC3
for D4 and CSD). The
glutathione S-transferase (GST) fusion constructs, pGY2WT
and pGY2PM1, encoding the full length FRGY2 cDNA and its point
mutant, respectively, were used as the templates (Bouvet et
al., 1995
). The polymerase chain reaction products were digested
with HindIII and XbaI and cloned in the
corresponding sites of pSP64 poly(A) vector (Promega).
GAATTTAAGCTTCAAAGATGACAG3
and 5
GGAACTCTAGAGTTACTTTTT AGC3
. This
fragment was subcloned into the HindIII and XbaI
sites of pSP64 poly(A) to give pSP H1.11 (Bouvet and Wolffe, 1994
).
Plasmid pH1.10 was described previously (Bouvet and Wolffe, 1994
).
pH4NF contained the histone H4 cDNA with the flag epitope sequence
under control of the SP6 promoter (kindly provided by Dr. L. Freeman in
this laboratory). SP6 H1 + YRS was constructed by kinasing and
annealing oligonucleotides 1BS1 (5
AGCTTAACA TCAGACAAATAAAAATCATCCGA3
,
sense strand) and 1BS2 (5
AGCTTCGGATGATTT TTATTTGTCTGATGTTA3
,
antisense strand) and ligating the annealed fragment into the
HindIII site of pSP H1.11. pSPB4 was constructed by
subcloning the coding sequence of B4 (Cho and Wolffe, 1994
) into the
HindIII/XbaI site of pSP64 poly(A) vector by
polymerase chain reaction using the primers
5
CTGGAATTCTAAGCTTCCATGGCTCCTAAG3
and 5
ATATCTAGACTAGTTT
GTCACTTTCTTTCC3
.
). The proteins
were dialyzed against a buffer consisting of 20 mM Tris-HCl
pH 8.0, 1 mM EDTA, 1 mM dithiothreitol, 10%
glycerol, and 1 mM phenylmethylsulfonyl fluoride. The FRGY2
protein with T7 gene 10 leader peptides (T7-FRGY2) was prepared as
described (Tafuri and Wolffe, 1992
; Bouvet et al.,
1995
).
). RNA
was heated at 65 °C for 10 min and quickly chilled on ice before
use. In vitro translation was performed with the
nuclease-treated rabbit reticulocyte lysate system (Promega). Histone
H1 mRNA (0.25 µg) was incubated at 30 °C for 60 min in a
25-µl reaction mixture consisting of 15 µl of rabbit reticulocyte
lysate, 50 µM each of amino acids including 87.5 µCi of
[3H]lysine and 17.5 µCi of [3H]arginine,
20 units of RNasin (Promega), and GST-FRGY2 protein as indicated. The
mixture was then digested with 5 µg of RNase A at 30 °C for 5 min.
The aliquots were subjected to electrophoresis in a 4-20%
polyacrylamide gel containing SDS. The gel was fixed, treated with
Amplify (Amersham Corp.), and dried. The translation products were
detected by fluorography. To detect the phosphorylation of FRGY2 in
reticulocyte lysate, GST-FRGY2 WT protein was incubated in the same
reaction mixture as above except that 40 µCi of
[
-32P]ATP (3000 Ci/mmol) was included instead of
3H-labeled amino acids.
;
Bouvet and Wolffe, 1994
). 32P-Labeled RNA of 95 nucleotides
in length containing a FRGY recognition sequence (2.14 WT:
UU
AGACAAAUAAAA AUCAUCCGU) or its one point mutant
(M3/4-1: UU
AGACAAAUAAAAAUCAUC CGU) were synthesized
by T7 RNA polymerase (Bouvet et al., 1995
).
; Landsberger and
Wolffe, 1995
). Defolliculated oocytes were prepared by treating frog
ovaries with collagenase, and they were incubated at 18 °C
overnight. Thirty-two nl of DNA or RNA solution was injected into
nuclei or cytoplasm of healthy stage VI oocytes as indicated in the
figure legends. Injected oocytes were maintained at 18 °C for the
indicated times and then collected and stored at
80 °C until use.
Nuclei were isolated manually from oocytes under microscope.
. In vitro transcribed RNA was mixed
with bacterially expressed T7 FRGY2 protein at either 1:1 or 30:1
FRGY2/mRNA molar ratio in 10 mM Tris-HCl (pH 7.5) and
50 mM NaCl and incubated on ice for 30 min. Naked mRNA
or the FRGY2/mRNA mixtures were injected into the cytoplasm of
stage VI oocytes in a volume of 46 nl.
). Briefly, final 0.2 N HCl was added to oocyte homogenates, and after 1 h
at 0 °C the soluble proteins were recovered by centrifugation. The
proteins were concentrated by precipitating with trichloroacetic acid
and analyzed by SDS-polyacrylamide gel electrophoresis (SDS-PAGE).
). 32P-Labeled primer H1FM4
5
TCTTCAGTTTGGGTTCTGCCGGGGGAGC3
was used to detect histone H1
mRNA, and primer 5
GTTGGGGGATGTGATTGGGTCTTGAC3
was used to detect
B4 mRNA.
).
The homogenate was centrifuged at 4 °C for 10 min, after which the
supernatant was irradiated with UV light for 10 min in a Stratalinker
(Stratagene). The samples were digested with a final concentration of
0.5 mg/ml RNase A at 37 °C for 1 h and analyzed by SDS-PAGE.
Immunoprecipitation of UV cross-linked proteins was performed as
described (Bouvet and Wolffe, 1994
).
). FRGY2 protein and its derivatives
expressed from the injected mRNA had flag epitopes at their C
termini, thus they were detected by Western blotting with anti-flag M2
antibody (Eastman Kodak Co.).
Reconstitution of mRNP Complexes in Vitro and Translational
Repression of mRNA in a Rabbit Reticulocyte Lysate
) have the capacity to direct the translational
repression of mRNA in a rabbit reticulocyte lysate (Richter and
Smith, 1984
; Minich and Ovchinnikov, 1992
; Evdokimova et
al., 1995
). Translational repression depends on the mass of
protein per mRNA. mRNPs assembled in vivo or
reconstituted in vitro have a protein/RNA mass ratio of 5:1,
or approximately one protein molecule per 50 nucleotides (Darnborough
and Ford, 1981; Richter and Smith, 1984
; Marello et al.,
1992
). We wished to determine the molar ratio of protein to mRNA
necessary to repress the translation of histone H1 mRNA in
vitro. Reconstitution of in vitro-synthesized H1
mRNA (735 nucleotides in length) with the wild type FRGY2 protein
(Fig. 1) led to the progressive repression of H1 protein
synthesis (Fig. 2A). Translational repression
is almost complete once 2 µg (30 pmol) of FRGY2 have associated with
0.25 µg (1 pmol) of H1 mRNA (Fig. 2C), indicative of
one FRGY2 protein bound for every 25 nucleotides. Consistent with
earlier suggestions (Darnborough and Ford, 1981; Marello et
al., 1992
; Evdokimova et al., 1995
), we suggest that
FRGY2 has to interact with mRNA throughout most of the nucleotide
sequence in order to efficiently repress translation.
Fig. 1.
FRGY2 protein and its derivatives.
A, diagrams of FRGY2 and its derivatives used in this study.
The cold shock domain (striped box), RNP-1 motif
(solid box), and basic (+) and acidic (
) amino acid
clusters in the C-terminal tail domain are indicated on the wild type
FRGY2 protein with amino acid numbers. An amino acid sequence in the
RNP-1 motif is shown below the diagram. Deletion and point mutants are
shown by open boxes. B, purification of GST-fusion FRGY2
proteins. One µg of each protein was analyzed in a 4-20%
polyacrylamide gel containing SDS. The gel was stained with Coomassie
Brilliant Blue.
Fig. 2.
Translational repression by FRGY2 protein in
rabbit reticulocyte lysate. A, translation reactions in
rabbit reticulocyte lysate were directed by 0.25 µg (1 pmol) of
histone H1 mRNA in the presence of 3H-labeled lysine
and arginine. Lane 1 shows the reaction containing no
mRNA. 0.2 µg (3 pmol, lane 3), 0.5 µg (7.5 pmol,
lane 4), 1 µg (15 pmol, lane 5), or 2 µg (30 pmol, lane 6) of GST-FRGY2 WT protein was added to the
translation reaction. Translation products were analyzed by SDS-PAGE.
The gel was dried and subjected to fluorography. The position of
histone H1 protein is indicated. Lane M contains
14C-methylated protein molecular weight markers (Amersham
Corp.). B, phosphorylation of FRGY2 protein in rabbit
reticulocyte lysate. Reactions were performed as in A in the
presence of [
-32P]ATP instead of
3H-labeled amino acids. Two µg of GST-FRGY2 WT protein
was added to the reaction shown in lane 2. Proteins were
separated by SDS-PAGE and visualized by autoradiography. The position
of GST-FRGY2 WT is indicated. Proteins around 70-50 kDa seen in
lane 2 are degradation products of GST-FRGY2 (Fig.
1B). C, titration of FRGY2 in rabbit reticulocyte
lysate translation system. Translation reactions directed by 0.25 µg
of histone H1 mRNA were performed in the presence of various amount
of GST-FRGY2 WT protein. Translation product was quantified by
densitometer. Relative translation activity normalized by the value of
the reaction with no GST-FRGY2 WT as 100% is shown.
) or in vivo (Murray et al., 1991
;
Braddock et al., 1994
). We did not explore this hypothesis
other than to demonstrate that FRGY2 was phosphorylated in the rabbit
reticulocyte extract (Fig. 2B).
). Having established
conditions under which the full length FRGY2 protein directs the
repression of histone H1 mRNA in vitro (Fig. 2), we next
wished to explore the role of the sequence-specific RNA binding CSD
relative to non-sequence-specific tail domain in repressing
translation. In the current study we compared the capacity of a limited
set of mutants shown in Fig. 1 to repress translation. These include
the full length FRGY2 protein (WT); a mutant in which the RNP1 motif of
the CSD has been altered to significantly reduce sequence-specific RNA
binding (PM1); and the CSD domain alone (CSD), the entire N terminus of
FRGY2 including the CSD (D4) and the tail domain (D6). The CSD, D4, and
D6 all bind to RNA approximately 10-fold less stably than wild type
FRGY2. The CSD and D4 proteins retain the capacity to bind to RNA with
sequence selectivity (Bouvet et al., 1995
).
Fig. 3.
Translational repression by GST-FRGY2 and its
derivatives. Translation reactions were performed as in Fig.
2A in the absence (lanes 1 and 8) or
presence of 15 pmol (lanes 2, 4, 6, 9, 11, and
13) or 45 pmol (lanes 3, 5, 7, 10, 12, and
14) of GST-fusion FRGY2 proteins (Fig. 1) or GST protein as
indicated.
).
This FRGY recognition sequence (YRS) is the hexanucleotide 5
AACAUC3
.
We also defined mutants in the YRS that failed to be selectively
recognized by FRGY2 (Bouvet et al., 1995
). We wished to
determine whether the presence of a YRS element immediately adjacent to
a translation initiation codon in the H1 mRNA might confer the
selective repression of translation in vivo. This synthetic
mRNA might provide an enhanced opportunity for sequence-selective
repression of translation by the Y-box proteins to be manifest. It
should be noted that the sequence of the H1C mRNA used in the
experiment lacks a YRS element. We first had to demonstrate that
sequence-selective interaction of FRGY2 with the YRS element would take
place in vivo. Our earlier analyses of sequence-specific
interactions of FRGY2 with RNA had all occurred in vitro
under conditions that might not reflect those within the oocyte (Bouvet
et al., 1995
).
) incapable
of binding FRGY2 in vitro were injected into the cytoplasm
of Xenopus oocytes. The oocytes were incubated for 90 min
prior to lysis and irradiation with UV light. After RNase A treatment
the proteins were immunoprecipitated with antibodies specific for
FRGY2. The RNA containing the native YRS element demonstrated a clear
preference for association with FRGY2 compared to that containing the
mutant YRS (Fig. 4, compare lanes 5 and
6). We conclude that FRGY2 selectively binds to RNAs that
contain the YRS element in vivo. Although it would be of
great interest to examine the selective association of mutant or
deletion forms of FRGY2 with the YRS element using the in
vivo cross-linking assay, this did not prove possible due to the
low levels of mutant protein expression compared to the large stores of
endogenous FRGY2 protein (see Figs. 6, 7, 8, 9).
Fig. 4.
Sequence-specific RNA binding in
Xenopus oocytes. 32P-Labeled in
vitro-transcribed RNA containing YRS (S) or its one
point mutant (NS) was injected into the cytoplasm of
Xenopus oocytes. The oocytes were harvested at 90 min after
injection. Lysates from total oocytes were stood on ice (lanes
1 and 2) or irradiated with UV light (lanes
3-6) and digested with RNase A. Aliquots of UV-irradiated samples
were immunoprecipitated with anti-FRGY2 antibody (lane 5 and
6). Samples of 2 oocyte equivalent (lanes 1-4)
or 4 oocyte equivalent (lanes 5 and 6) were
analyzed by 4-20% SDS-PAGE.
Fig. 6.
Expression of FRGY2 protein and its
derivatives in Xenopus oocytes. Ten ng of mRNA
encoding flag epitope-tagged FRGY2 protein and its derivatives was
injected into the cytoplasm of stage VI oocytes together with
3H-labeled lysine and arginine. The oocytes were harvested
at 18 h after injection. Acid-soluble proteins from injected
oocytes were analyzed by SDS-PAGE and detected by fluorography.
Lane 6 shows the proteins from oocytes injected with labeled
amino acids alone. Lane M contains
14C-methylated protein markers.
Fig. 7.
Cytoplasmic localization of FRGY2 and its
derivatives expressed from the injected mRNA. Stage VI oocytes
were injected with 10 ng of mRNA encoding FRGY2 derivatives,
histone H1 or H4 as indicated. 3H-Labeled lysine and
arginine were injected alone (lanes 1 and 2) or
together with mRNA (lanes 3-20). The oocytes were
incubated at 18 °C for 18 h (lanes 1-16) or 6 h (lanes 17-20). Acid-soluble proteins from cytoplasmic
(C) or nuclear (N) fractions were analyzed by
4-20% SDS-PAGE (lanes 1-12 and 17-20) or 14%
SDS-PAGE (lanes 13-16). In lanes 13 and
14, the left arrow indicates D6; in lanes
15 and 16, the right arrow indicates H4. In
lanes 17 and 18, the left arrow
indicates D6, and in lanes 19 and 20, the
right arrow indicates H1.
Fig. 8.
Incorporation of FRGY2 into mRNP. Ten ng
of mRNA encoding FRGY2 protein or its derivatives was injected into
oocyte cytoplasm. At 18 h after injection oocytes were harvested.
Oocyte homogenates were subjected to glycerol density gradient
centrifugation as described under ``Materials and Methods.''
A, aliquots of oocyte homogenate (input) and each
fraction of glycerol density gradient were electrophoresed in a
polyacrylamide gel containing SDS and transferred to a polyvinylidene
difluoride membrane. Endogenous FRGY2 protein from oocytes without
mRNA injection was detected by Western blotting with anti-FRGY2
antibody (top panel). FRGY2-WT, -PM1, -D4, and -D6 proteins
expressed from injected mRNA were detected with anti-flag antibody
(lower panels). B and C, RNA from each
fraction was electrophoresed in an agarose gel under denaturing
conditions. RNA was visualized by ethidium bromide staining
(B). Endogenous histone H1 mRNA was detected by Northern
blotting (C).
Fig. 9.
FRGY2 mutant proteins expressed from injected
mRNA have no effect on translation. Three ng (lane
4) or 10 ng (lanes 5-9) of mRNA encoding FRGY2 or
its derivatives was injected into stage VI oocyte cytoplasm. At 6 h after the first injection, 3 ng of histone H1 mRNA (lane
2) or 1 ng of plasmid pH1.10 (lanes 3-9) was injected
into the oocyte nucleus. The oocytes were incubated at 18 °C for
18 h and then injected with 3H-labeled lysine and
arginine. Six hours later oocytes were harvested. Acid-soluble proteins
were analyzed by SDS-PAGE (A), and histone H1 mRNA was
detected by primer extension (B).
to the translation
start site (see under ``Materials and Methods'') was injected into
oocyte cytoplasm either naked or reconstituted with FRGY2. The FRGY2 to
mRNA molar ratio was either high, 30:1 (Fig.
5A), or low, 1:1 (Fig. 5B). As an
internal control we made use of B4 mRNA that was mixed into each
sample as naked RNA. In each case we monitored the recovery of mRNA
by primer extension (mRNA) and the synthesis of protein
by radiolabeling with [3H]arginine and
[3H]lysine (Protein). The translational
efficiency of H1 mRNA was assessed by normalizing the synthesis of
protein to the mass of mRNA recovered (right panel). We
find that the introduction of a YRS element does not lead to the
selective inhibition of translation of H1 mRNA when injected in
naked form (right panel, solid bars). In the presence of a
30-fold molar excess of FRGY2 translation of in
vitro-reconstituted mRNPs is inhibited after injection into
oocytes. Inhibition of translation attributed to FRGY2 association from
the mRNA containing the YRS is approximately 20-fold compared to a
3-fold repression in the absence of the YRS (Fig. 5A, right
panel). It should be noted that in presenting this data
normalizing protein synthesis to the mRNA level remaining at the
end of the incubation period may be misleading. A low level of mRNA
at the end of the experiment does not necessarily mean a low level
throughout the incubation, thus normalization may exaggerate the
translation response. With this reservation, we suggest that
significant translational repression occurs in the absence of a YRS
element in the H1 mRNA (Fig. 5A, Protein, compare
lanes 2 and 3), but that the presence of a YRS
element augments translational repression when the FRGY2 protein is
present at a 30-fold molar excess over mRNA. We obtained a very
different result at equimolar ratios of FRGY2 to H1 mRNA (Fig.
5B). Under these conditions the prior association of FRGY2
with mRNA enhances histone H1 mRNA translation (Fig. 5B,
right panel). Again the influence of FRGY2 on the translation
process is more pronounced when the mRNA contains a YRS element
(Fig. 5B, right panel). These results suggest that the
repression of translation manifested once high molar excesses of FRGY2
interact with mRNA require the association of FRGY2 throughout a
large segment of the RNA sequence. The influence of the YRS in
facilitating translational repression under these conditions might be
to nucleate the association of FRGY2 with a particular mRNA. Since
the Y-box proteins assemble large homomultimeric complexes (Tafuri and
Wolffe, 1992
; Evdokimova et al., 1995
) perhaps such
nucleation could facilitate ribonucleoprotein complex assembly. The
capacity of equimolar amounts of FRGY2 to enhance translation might be
related to the capacity of a targeted RNA binding protein to
destabilize any inhibitory secondary structure around the initiation
codon of the H1 mRNA (Evdokimova et al., 1995
). Since
the translational repression due to FRGY2 binding to mRNA
previously described (Richter and Smith, 1984
; Kick et al.,
1987
) and recapitulated in our experiments (Figs. 2, 3 and 5) occurs at
large molar ratios of FRGY2 to mRNA, we focus here on the fact that
translational repression can occur on H1 mRNA (Figs. 2, 3, and 5)
or globin mRNA (Richter and Smith, 1984
; Kick et al.,
1987
) apparently irrespective of sequence. This is consistent with our
earlier observation that prokaryotic mRNAs could also be
translationally silenced through interaction with the Y-box proteins
(Bouvet and Wolffe, 1994
; Ranjan et al., 1993
).
Fig. 5.
Translational repression of in
vitro-transcribed mRNA microinjected into oocytes occurs only
at a high molar ratio of FRGY2 to mRNA. mRNP particles were
reconstituted using in vitro-transcribed mRNA and
recombinant FRGY2 protein with either a 30:1 FRGY2/mRNA molar ratio
(A) or a 1:1 ratio (B). These mRNA/FRGY2
mixtures or mRNA alone were injected into the oocyte cytoplasm with
[3H]arginine and [3H]lysine. After 16 h of incubation at 18 °C, oocytes were collected. RNA injections was
confirmed by RNA extraction and primer extension analysis (left
panel). Proteins were extracted and analyzed by SDS-PAGE
(center panel). Autoradiograms were quantified with a
densitometer (right panel). Experiments were performed with
either in vitro-transcribed H1 mRNA (lanes 2 and 3) or a H1 transcript containing a FRGY2 recognition
sequence (YRS) immediately upstream from the start codon
(lanes 4 and 5); B4 mRNA was coinjected in
both groups as an additional control. Control (C) oocytes
were injected with radiolabeled amino acids alone.
; Bouvet and Wolffe, 1994
). Antibodies
against FRGY2 microinjected into oocytes relieve the repression of
translation of mRNA (Braddock et al., 1994
; Gunkel
et al., 1995
). Thus there is significant experimental
evidence suggesting that the interaction of FRGY2 with mRNA
contributes to translational masking of maternal mRNA in
vivo. Nevertheless the determinants of translational repression
in vivo might differ markedly from those operating in
vitro (Figs. 2, 3, and 5). Our working hypothesis to account for
translational repression by FRGY2 is that the protein interacts with
mRNA packaging the majority of the nucleotide sequence, thereby
precluding the access of key elements of the translational regulatory
machinery (Bouvet and Wolffe, 1994
). A comparable role for nucleic acid
packaging proteins exists for the histones in regulating the access of
the transcriptional machinery to DNA in chromatin (Wolffe, 1995
). It
has also been proposed that the Y-box proteins including FRGY2 have
active roles within the nucleus (Ranjan et al., 1993
;
Braddock et al., 1994
; Gunkel et al., 1995
). We
next wished to explore any roles of the CSD and tail domain of FRGY2 in
establishing a translationally repressed state in vivo.
), thus the accumulation of equal
amounts of protein in nuclear and cytoplasmic compartments represents a
10-fold higher concentration of protein in the nucleus. The failure of
the tail domain to accumulate in oocyte nuclei is in contrast to our
earlier demonstration of the accumulation of the tail domain in the
nucleoli of Xenopus somatic cells (Ranjan et al.,
1993
). The proteins used are identical in sequence, and thus we suggest
that determinants of nuclear versus cytoplasmic localization
differ from the oocyte to somatic cells. We do not find any known
nuclear export signals within the FRGY2 sequence (Fischer et
al., 1995
). However, all of the mutant proteins will retain the
capacity for nonspecific interactions with mRNA (Bouvet et
al., 1995
), which might facilitate their cytoplasmic
retention.
) in
vivo-synthesized H1 mRNA is translationally repressed compared
to in vitro-synthesized H1 mRNA injected into the oocyte
(Fig. 9A, compare lanes 2 and
3). This translational repression is maintained in the
presence of exogenous FRGY2 (Fig. 9A, lanes 3-5).
Expression of the mutant FRGY2 proteins is without significant effect
on translational repression (Fig. 9A, lanes 6-9). Thus
expression of these proteins in this experiment does not enhance or
relieve the translational repression of histone H1 mRNA coupled to
transcription operative in oocytes. This could be due to relatively low
level of expression of the FRGY2 proteins from injected mRNA
compared to the abundance of endogenous FRGY2 (data not shown).
Alternatively, this failure could be due to failure of the mutant
proteins to stably associate with RNA synthesized in vivo
(Fig. 8) compared to their stable association in vitro
(Figs. 2, 3, and 5; see also Bouvet et al., 1995
). This
failure to interact stably with RNA in vivo might be due to
competition for RNA binding with endogenous RNA binding proteins
including FRGY2. This is not the case for the tail domain (Fig. 8; D6);
nevertheless, association with the tail domain rather than intact FRGY2
does not alleviate translational silencing of H1 mRNA (Fig.
9A). It is also likely that protein-protein interaction
among RNA-bound FRGY2 and other mRNP proteins plays an essential role
in the formation of mRNP particles.
; Kick
et al., 1987
; Evdokimova et al., 1995
) indicates
that the tail domain has a key role in inhibiting translation (Fig. 3).
The tail domain binds RNA with no apparent sequence selectivity
consistent with the high molar excesses (30-50) over mRNA
necessary to repress translation (Figs. 2, 3, and 5). The tail domain
is also the site of FRGY2 phosphorylation, a known regulator of
translation (Kick et al., 1987
; Murray et al.,
1991
). In vivo we find that overexpressed mutant FRGY2
proteins with the exception of the tail domain are not stably
incorporated into mRNP (Fig. 8). Wild type FRGY2 requires both the CSD
and tail domain for stable association with RNA. A mutant CSD appears
to destabilize interaction of FRGY2 with RNA (Fig. 8). The lack of
effect of the mutant FRGY2 proteins on translational repression
in vivo appears likely to reflect their failure to be
incorporated into mRNP. Although the tail domain can bind RNA,
translational repression established in vivo is not relieved
(Fig. 8) consistent with the capacity of this domain to independently
repress translation (Fig. 3). The lack of incorporation into mRNP
in vivo may well reflect the failure of FRGY2 derivatives to
compete for RNA binding with either endogenous FRGY2 in the cytoplasm
or the nuclear RNA binding proteins that will be associated with newly
synthesized RNA in the nucleus (Fig. 7). Future experiments will
further explore the nature of these nuclear proteins and their
potential role in the coupling of translational silencing to the
transcription process (Fig. 9) (Bouvet and Wolffe, 1994
; Wolffe and
Meric, 1996
).
*
The costs of publication of this
article were defrayed in part by the
payment of page charges. The article
must therefore be hereby marked
``advertisement'' in
accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
Recipient of Japanese Society for Promotion of Science fellowship
for Japanese biomedical researchers at the National Institutes of
Health.
§
To whom correspondence should be addressed: Laboratory of Molecular
Embryology, National Institute of Child Health and Human Development,
Bldg. 6, Rm. B1A-13, Bethesda, MD 20892-2710. Tel.: 301-402-2722; Fax:
301-402-1323; E-mail: awlme{at}helix.nih.gov.
1
The abbreviations used are: mRNP, messenger
ribonucleoprotein; CSD, cold shock domain; GST, glutathione
S-transferase; PAGE, polyacrylamide gel
electrophoresis.
©1996 by The American Society for Biochemistry and Molecular Biology, Inc.
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