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(Received for publication, June 7, 1996, and in revised form, August 7, 1996)
From the Extracellular secretion of the peptide antibiotic
colicin V (ColV) in Escherichia coli is mediated by a
dedicated exporter system consisting of host TolC protein and the
products of two specific genes, cvaA and cvaB,
the latter being a member of the ATP binding cassette (ABC)
superfamily. An amino-terminal export signal of ColV is specific for
the CvaA-CvaB-TolC exporter and is processed concomitant with
secretion. In this study, we attempt to characterize this processing
with a secretable marker protein, ColV-1, using a newly developed
in vitro assay. Processing is found to be dependent on both
CvaA-CvaB transporters and the TolC protein and to require membrane
integrity. An additional cytoplasmic soluble factor(s) is also
necessary for the processing. Although the sequence of the cleavage
site suggests it could be a substrate, ColV-1 cannot be processed
in vitro by the purified leader peptidase I. Moreover,
ColV-1 processing is inhibited by antipain and
N-ethylmaleimide. Furthermore, the processing requires
energy in the form of nucleotide hydrolysis. These results indicate
that the processing of ColV-1 is specific and more complex than
expected, requiring the CvaA-CvaB-TolC transporter intact in the
membrane, energy, and cytosolic factors for rapid cleavage.
The localization of proteins to different cellular and
extracellular compartments has been studied intensively because of its
fundamental importance to all living cells. The best characterized
process is the classic, signal sequence-dependent export
pathway (1, 2). In Gram-negative bacteria, this pathway requires the
products of several sec genes and precursor proteins bearing
an amino-terminal signal sequence, which usually has a positively
charged amino terminus and a hydrophobic core, followed by a cleavage
site for signal peptidases (3).
There is, however, a group of proteins and peptides that are exported
by signal sequence-independent pathways. Such substrates include yeast
a factor (4), Escherichia coli The bacterial ABC export system is exemplified by the secretion of
ColV is synthesized as a 103-amino acid primary translation product
(pre-ColV) which does not contain a typical Sec-dependent
amino-terminal signal peptide, even though its amino-terminal 15
residues are processed concomitant with extracellular secretion (32,
33). Homology analysis reveals that the sequence of this amino-terminal
signal has significant similarity to the leader peptides of
nonlantibiotics and some lantibiotics found in Gram-positive bacteria
(32- 34). The resulting 88 residues, comprising the mature colicin V
peptide, has aberrant mobility on SDS-polyacrylamide gel
electrophoresis (predicted Mr, 8700; observed
Mr, 5800; Ref 32). It has been suggested that
active ColV probably contains a disulfide bond between the only
cysteines at positions 91 and 102 of the polypeptide (33). ColV-1 is a
Tn5 ColV mutant form with the 21 carboxyl-terminal amino acids of
colicin V replaced by 8 heterologous residues (32). It can be secreted
efficiently into extracellular media from cells with a plasmid
containing cvaA and cvaB, indicating that the
carboxyl-terminal 21 amino acids of ColV are not required for secretion
(32), in contrast to that of hemolysin. It loses ColV toxicity but
exhibits normal mobility on SDS-polyacrylamide gel electrophoresis
(predicted Mr, 7200; observed
Mr, 7300), providing a convenient tool for
certain studies.
In this study, we have developed an in vitro assay
using ColV-1 as a marker protein to characterize the processing of
ColV. The results show that the processing of ColV-1 in
vitro requires the intact CvaA, CvaB, and TolC transporters in the
membranes. Additionally, nucleotide hydrolysis and soluble factor(s)
are required for the processing. Moreover, the specific inhibition in
processing by antipain and NEM suggests that the peptidase responsible
for ColV-1 processing might be a cysteine protease.
E. coli
strains and plasmids used in this study were as follows: MC4100
( Isolation of plasmid DNA,
transformation of bacteria, restriction enzyme digestion, and other
routine DNA manipulations were performed using standard procedures
(36). For cloning the cvaC-1 gene behind the T7 RNA
polymerase promoter, two primers, primer 1,
5
Cells were grown at
37 °C in TB medium supplemented with 0.5% glucose and appropriate
antibiotics. The overnight culture was diluted 1:50 in the same medium.
When the cells had grown to A600 of 0.2-0.3,
0.1 mM 2,2 In the pulse chase experiment, BL21( Synthesis of ColV-1
precursors by a cell-free transcription-translation system from plasmid
pXZ5 (or pXZ10) was modified from the described in vitro
translation system (35) using S30 from strain D10 or D10/pHK11-1. In
addition to the reagents described, the mixtures (in 1 ml) contained 5
mM phosphoenolpyruvate-HCl, 0.88 mM each of
UTP-Tris, CTP-Tris, and GTP-Tris, 0.76 mM ATP-Tris, 25 µg
pXZ5 plasmid DNA, 200 µCi of [35S]methionine, 0.174
mg/ml tRNA, and 40 units of T7 RNA polymerase. Reactions were carried
out at 37 °C for 10 min, and the mixtures were centrifuged in a
Beckman Instruments TL100.2 rotor at 300,000 × g for
20 min to remove ribosomes and any endogenous membrane vesicles. The
supernatant was used as the source of ColV-1 precursor.
25 µl of supernatant from
in vitro transcription-translation of ColV-1 was mixed with
0.1 unit of A280 membrane vesicles (prepared as
described previously; Ref. 35), along with 2 µl of
energy-regenerating mixture (35) and an appropriate amount of S100 to a
final volume of 100 µl. S100 was prepared from S30, which was
centrifuged at 100,000 rpm for 20 min in a Beckman Instruments TLA100.2
rotor. The reaction mixtures were incubated at 37 °C for 15 min.
Membrane vesicles were isolated by centrifugation or precipitated by
10% TCA where indicated, then dissolved in the sample buffer and
submitted to SDS-polyacrylamide gel electrophoresis. Autoradiographs
were quantitated by PDI image analyzing system (Protein Databases Inc.,
New York, NY). For the calculation of processing ratio, correction was
made based on the presence of three residues of methionine in the
precursor form and two residues in the processed form.
0.3 ml of the 300,000 ×
g supernatant of the transcription-translation mixture was
applied to a P4 polyacrylamide (Bio-Rad) column (0.5 × 40.0 cm),
which had been previously equilibrated with 50 mM Tris-HCl,
pH 7.6, and 1 mM dithiothreitol. Fractions (0.25 ml) were
collected, and those containing ColV-1 were monitored by determinations
of a hot trichloroacetic acid-precipitable count (National
Diagnostics), verified by gel electrophoresis, and pooled.
Regular SDS
gel electrophoresis with 15% acrylamide was carried out according to
the method of Laemmli (37). 15% Tricine SDS gel electrophoresis (38)
at 4 °C was used for separating precursor and processed forms of
ColV-1. For immunoprecipitation, samples were diluted to 1 ml with IPB
buffer (20 mM Tris-HCl, pH 8.0, 0.15 M NaCl, 5
mM EDTA, 0.5% Triton X-100, and 0.05% SDS) and treated
with preimmune serum (10 µl) on ice for 30 min. Then 100 µl of 10%
Sepharose-protein A suspension in IPB buffer was added for 10 min with
occasional shakings. After spinning at 5,000 rpm for 2 min, the
supernatant was treated with anti-ColV peptide antiserum (10 µl) for
30 min, and 100 µl of 10% Sepharose-protein A suspension was added
for 10 min. The resin pellet after centrifugation was washed with 1 ml
of IBP buffer twice, and then proteins were eluted with 1.5 ×
sample buffer and boiling.
Purified GroEL, GroES, DnaK, DnaJ,
and GrpE were from StressGen Biotechnologies Corp. SecA, SecB, and
proOmpA were laboratory stocks purified from T7-SecA- and
T7-SecB-overproducing strains and BA13/pAM103, respectively.
Nucleotides and protease inhibitors were obtained from
Sigma. GMP-PNP3 was obtained from
Boehringer Mannheim. Other chemicals were of reagent grade obtained
from commercial sources.
In this study, we chose ColV-1 (Fig.
1A) as a model marker protein. The whole
cvaC-1 gene was subcloned behind the T7 RNA polymerase
promoter in plasmid pXZ5 (Fig. 1B). The ColV-1 precursor was
uniquely labeled in the strain BL21(
As a first step to elucidate biochemically the
mechanism of ColV secretion, we developed an in vitro
processing assay using ColV-1 as a marker protein, transcribed and
translated from plasmid pXZ5. Inverted inner membrane vesicles were
isolated from MC4100/pHK11-1, which could actively secrete ColV-1
in vivo. In the preliminary experiments, this assay was
carried out both co- and post-translationally; i.e. the
membranes were added either during or after protein synthesis.
There was not much difference between these two processes. A
very weak processed band of ColV-1, which had the same migration
pattern of mature ColV-1, was detected, unless the amount of S100 from
D10/pHK11-1 was increased (Fig. 3A,
lanes 2-5). On the other hand, there was no processed form
without addition of membranes (Fig. 3A, lane 7); therefore,
the processing was not due to nonspecific proteases in the S100.
However, since S100 from the D10 strain without CvaA and CvaB
transporter genes also had the same enhancement effect (Fig. 3A,
lane 6), the soluble factor was not specifically derived from the
ColV operon.
Surprisingly, only about 20% of total processed ColV-1 was found to
co-sediment with membrane vesicles, and 80% remained in the
supernatant after centrifugation (data not shown). Those in the
supernatant might be unable to complete the translocation in the
membranes and were released after cleavage. This result was consistent
with the in vivo data that some processed ColV-1 was found
in cytosol (data not shown). Since a majority of the processed form was
in the supernatant, a processing assay hereafter was then carried out
in total reaction mixtures precipitated by TCA without isolating
membranes, unless specified.
In the transcription-translation mixture, a protein band was
observed above the precursor of ColV-1, which was also processed
in the assay (Fig. 3A, lanes 4-6). As shown in Fig.
3B, the precursor of ColV-1 (PColV-1) and its processed form
(ColV-1) and the band above the precursor of ColV-1 (PColV-1
The cleavage site for ColV is preceded by the sequence
Ser-Gly-Gly, making it a potential substrate for leader peptidase I, as
noted by Fath et al. (32). However, in the in
vitro assay, there was no processing of ColV-1 with solubilized
membranes from MC4100/pHK11-1, even in the presence of 4 µg of
purified leader peptidase I (see Fig. 3C). Under the same
conditions, both purified and in vitro translated proOmpA
were completely processed by 0.8 µg of purified leader peptidase I or
50% processed by the leader peptidase I released from octylglucoside
(OG)- or Triton X-100-solubilized membranes (data not shown). When the
membranes were treated with OG or Triton X-100 concentrations higher
than 0.5 or 0.1%, respectively, the processing was completely
abolished (Fig. 3D). These data indicated that membrane
integrity, i.e. the transporter in the intact membrane, is
required for the processing and that there might be another peptidase
that processes ColV-1.
To characterize the processing of ColV-1,
different types of protease inhibitors were tested in the in
vitro assay. Based on the nature of their active sites and
mechanism of action, four mechanistic classes of protease have been
recognized thus far: metalloprotease, serine protease, aspartic
protease, and cysteine protease (39). Each type of protease activity
can be specifically inhibited by its own inhibitors. Thus, five
representative protease inhibitors were tested for their effects.
Pepstatin A, phosphoramidon, and phenylmethylsulfonyl fluoride had no
inhibition (Fig. 4A, lanes 3-6,
9, and 10). In contrast, antipain at 5 mM
showed significant inhibition (Fig. 4A, lane 8), and NEM
completely inhibited the processing of ColV-1, even at 1 mM
(Fig. 4A, lane 11). When the membrane fraction and soluble
factors were treated with NEM separately, the processing activity was
inactivated (Fig. 4B), indicating that the membrane and
soluble factors contributing to ColV-1 processing are
NEM-sensitive.
To characterize further the nature of the soluble
factor(s) that enhanced the processing, its sensitivity to protease and
to RNase was tested. As shown in Fig. 5A,
proteinase K (100 µg/ml) completely inactivated the soluble
factor, but not in the presence of an inhibitor,
phenylmethylsulfonyl fluoride, whereas treatment with the micrococcal
nuclease (500 µg/ml) had no effect. These results suggest that the
soluble factor(s), which enhances the processing, is of a protein
nature, and no functional RNA, if any, is accessible to RNase.
As the soluble factor(s) is not specific from ColV operons, it might be
a general factor. We tested several candidates that are known to be
involved in protein targeting: SecA, SecB, trigger factor, GroEL,
GroES, DnaK, DnaJ, and GrpE. None of these purified proteins alone or
in different combinations could enhance processing of ColV-1 (Fig. 5,
B and C). To determine whether the purified
factors need additional factors to function, small amounts of S100 were
mixed with these purified factors. No processing enhancement was
observed (Fig. 5, B, lanes 6, 11, and 13, and
C, lanes 4, 6, 8, and 10). These
results indicate that factors other than those tested have the
enhancing activity of processing.
To determine whether the processing of ColV-1
requires all three gene products in the in vitro assay,
membrane vesicles from strains MC4100
(cvaA
To determine the rate of
processing of ColV-1 in vitro, kinetics of processing was
performed in the assays with MC4100/pHK11-1 membrane vesicles. As shown
in Fig. 7, processing at 37 °C was linear up to 8
min, and half of the ColV-1 was processed within 4 min, indicating that
processing occurred rapidly in vitro, in a manner similar to
that observed in intact cells (Fig. 2B). Processing was much
less efficient but appreciable at 0 °C than at 37 °C. This result
is consistent with the finding that processing is still continued at
0 °C in vivo (data not shown).
It
is widely accepted that ATPase activity of ABC transporters contributes
energy to all active ABC protein-dependent transport. Since
CvaB is a member of the ABC transporters, it was of interest to
determine the energy requirement of the ColV-1 processing with our
in vitro assay. Small molecules (e.g. ATP and
salts), required for the transcription-translation mixtures of ColV-1,
were removed by gel filtration after in vitro synthesis.
Fractions containing ColV-1 were pooled and used for the assay.
As shown in Fig. 8A, processing was
completely abolished by such nucleotide depletion (lane 1).
This activity, however, could be restored when different nucleotides
were added to test for the processing of ColV-1 (Fig. 8A, lanes
2-9). As expected, ATP was active in promoting the processing and
more active than CTP and UTP. As the concentration was increased from
0.5 to 1.0 mM, the efficiency of ATP was increased
significantly. Surprisingly, GTP seemed to be the most efficient among
all NTPs. Furthermore, there was little processing with the
nonhydrolyzable GTP analogue GMP-PNP (Fig. 8A, lane 10),
indicating that the hydrolysis of GTP was required. Addition of 1
mM ATP together with 1 mM GTP was only slightly
more active than with 1 mM GTP alone (Fig. 8A, lane
11). Further titration of GTP and ATP on ColV-1 processing showed
that 3 mM GTP was sufficient to maximize the observed
processing, whereas ATP reached its maximum at 4 mM and was
still consistently less efficient than GTP at that level (Fig.
8B). These results show that GTP is as efficient as ATP if
not the most efficient nucleotide required for the processing.
It has been suggested that the CvaA-CvaB transporter
could have ``leader peptidase'' activity (32). Moreover, CvaB has
been proposed to possess protease activity (40, 41). It is thus of
interest to determine whether CvaA-CvaB membrane vesicles alone have
some processing activity without addition of soluble factor(s) and
energy. A new construct of ColV-1, pXZ10, that contained a double stop
codon and generated a single ColV-1 product (Fig. 9,
lane 1) was used. With energy and S100, the product of new
ColV-1 construct was processed in 15 min at 37 °C as efficiently as
that of the old construct (Fig. 9, lane 8). In contrast,
ColV-1 precursors were not processed after incubation with
CvaA Amino-terminal processing appears to be the first step during the
secretion of ColV. In this study, we characterized the processing of
colicin V using a marker protein, ColV-1. An in vitro system
has been developed, which shows that the processing of ColV-1 in
vitro requires the intact CvaA-CvaB-TolC transporter in membranes,
soluble factor(s), and energy in the form of nucleotide hydrolysis. The
possible involvement of leader peptidase I in ColV-1 cleavage can be
ruled out, since antipain and NEM prevent the processing in
vitro, and ColV-1 cannot be processed by purified leader peptidase
I.
Under the condition found in ColV-1, wild type ColV was also similarly
processed, but it was very unstable.2 Mature wild type ColV
has been shown to lack any post-translational modification beyond the
amino-terminal 15-residue removal (32, 33). Here, the processed form of
ColV-1 in the in vitro assay has also been radioactively
sequenced by double labeling with [35S]Met and
[3H]Gly; 3H activity was specifically
detected in 3rd and 11th cycles and 35S activity was
detected in the 8th cycle,2 corresponding to the predicted
processing site. Therefore, the requirements for processing of ColV-1
probably reflect those for wild type ColV.
The ColV leader sequence shares a common predicted secondary structure
with the leader sequences of many other peptide antibiotics, especially
the lactococcins (32, 33, 34, 42, 43). While this work was in progress, two
reports (40, 41) proposed that bacteriocin ABC transporters have
protease functions that process the double glycine type leader peptide
concomitant with export. It was reported that a fragment containing the
150 amino-terminal amino acids of LagD (the lactococcin G ABC
transporter) was able to cleave its cognate prebacteriocin and that
expression of the amino-terminal domain of PedD (the pediocin ABC
transporter) in cells was sufficient for prepediocin processing,
suggesting that LagD and PedD possess the processing activity. However,
the processing activity of the LagD fusion protein was low: it required
overnight incubation at 37 °C (40), and the expression of one PedD
domain in cells does not rule out the involvement of other cellular
factors (41). In our system, the processing is efficient with all
required components (almost completely processed within a few minutes
at 37 °C). It therefore seems closer to the physiological enzymatic
reaction that occurred in cells. Such processing occurs in the inner
membrane with an intact CvaA-CvaB-TolC complex. Our findings that
processing of ColV-1 can be inhibited by cysteine protease inhibitors
are consistent with the findings (40) that replacement of cysteine with
an alanine at residue 13 of LagD completely abolishes the activity of
the enzyme. Since both ColV-1 and CvaA do not contain any cysteine
residues (27, 32), it is possible that CvaB could be the target of NEM
and antipain and that CvaB could be the peptidase. Since the CvaA-CvaB
membrane alone has little processing activity even with overnight
incubation at 37 °C, additional soluble factors, which may function
as cofactors, are necessary for ColV-1 processing. Although we have not
established the protease responsible for the processing activity, it is
quite clear that the process is quite specific and dedicated, requiring
soluble factors, energy, and membrane integrity with intact CvaA, CvaB,
and TolC.
The findings in vitro that no ColV-1 processing was observed
with CvaA One of the interesting findings in this study, however, is that
processing of ColV-1 also requires soluble protein factor(s). It
probably serves as a targeting factor, a cofactor, or chaperone for
ColV-1 to interact with membrane transporters for processing and
secretion. This interaction is specific and critical, since without the
soluble factors, little ColV-1 is processed, although some precursors
can nonspecifically bind to membrane vesicles in the assay. Many heat
shock proteins function as molecular chaperones, which can maintain
presecretory proteins in a translocation-competent conformation in the
cytosol in the major secretion Sec system. However, we have shown that
SecA, SecB, trigger factor, GroEL, GroES, DnaK, DnaJ, and GrpE are not
involved in enhancing the processing of ColV-1. Preliminary
fractionation of the soluble factors revealed that multiple factors are
involved. It is possible that soluble factors may serve as cofactors
for the peptidase to function. In this regard, it is interesting that
nucleotide hydrolysis is required for the processing, and that GTP
seems to be the most efficient for processing. It has been demonstrated
that ATP is hydrolyzed during transport in reconstituted systems
directed by the eukaryotic multidrug resistance transporter and the
bacterial permeases HisP and MalK (44, 45, 46, 47, 48). In a reconstituted
histidine transport proteoliposome system, it was reported that GTP
could replace ATP reasonably well (70%; Ref. 45), indicating that this
type of ATPase has less substrate specificity. However, it does not
readily explain why GTP in the ColV-1 system is a more efficient
substrate. Therefore, it raises the possibility that a GTP-binding
protein might be involved in the processing of ColV-1. Ffh/4.5S
ribonucleoproteins contain a GTP binding domain and have greatly
stimulated GTPase activity when combined with the receptor protein
FtsY, and the complex has been proposed to be involved in the targeting
(49, 50). The possible role of this complex in ColV-1 processing is
under investigation. Computer analysis of the CvaA primary sequence
reveals that it also contains a nucleotide binding motif, suggesting
that CvaA may be involved in this GTP requirement. Moreover, CvaB is an
ABC transporter; therefore, ATP should theoretically be involved.
Indeed, in our hands, both GTP and ATP nonhydrolyzable analogs have
significant inhibition on processing,2 suggesting that both
GTP and ATP are involved. On the other hand, processing is only one
step in the export processes. So far, complete secretion into membrane
vesicles, as defined by resistance to protease digestion, has not been
demonstrated in this in vitro system. The requirements for
this complete secretion process, including involvement of nucleotides,
must await further studies.
We thank R. Dalby for purified leader
peptidase and N. Yu for purified SecA, H. Seoh for purified SecB, X.
Chen for purified proOmpA, P. Li for purified trigger factor, and Ann
Boyer for discussion and help with computer analysis that revealed that
CvaA may have GTP binding domains. We appreciate numerous discussions
with J. Houghton and members of the laboratory, especially Y. Yang.
Volume 271, Number 45,
Issue of November 8, 1996
pp. 28057-28063
©1996 by The American Society for Biochemistry and Molecular Biology, Inc.
,
¶
Department of Biology, Georgia State
University, Atlanta, Georgia 30303 and § Department of
Microbiology and Molecular Genetics, Harvard Medical School,
Boston, Massachusetts 02115
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
FOOTNOTES
Acknowledgments
REFERENCES
-hemolysin (5, 6),
Bordetella cyclolysin (7), Erwinia protease (8),
and an E. coli peptide antibiotic, microcin B17 (9). In each
case, export is mediated by a dedicated export apparatus. This group is
sometimes referred to as the multidrug resistance-like family because
one of its best known members is the P-glycoprotein or multidrug
resistance protein, which is responsible for the multidrug resistant
phenotype of tumor cells when overexpressed (10, 11). It is also
referred to as the ABC1 transporter superfamily, which
describes the ATP binding domain common to all members (12, 13, 14, 15, 16, 17).
-hemolysin from E. coli (18, 19). The targeting signal
for its secretion resides in the carboxyl-terminal 50 amino acids and
is not cleaved (20, 21, 22, 23). The transport process requires three specific
envelope proteins: the ABC exporter (HlyB), accessory protein (HlyD),
and outer membrane TolC protein (5, 6, 20, 21, 22, 23, 24, 25). The export of peptide
antibiotic colicin V (ColV) from E. coli also utilizes an
ABC export system similar to
-hemolysin (26, 27). The structure gene
for colicin antibiotic is encoded in large, low copy number virulence
plasmids found in E. coli and other members of
Enterobateriaceae (28). ColV kills sensitive cells by
disrupting their membrane potential (29). Four linked genes are
identified in the ColV operons (26, 27): the cvaC structural
gene, the cvi immunity gene, and the two exporter genes
cvaA and cvaB. Products of cvaA and
cvaB, together with the TolC protein, function as a
dedicated export system in producing cells to transport ColV through
two membranes (26, 27). Although biochemical data have shown that ColV
does not accumulate in the periplasm (30), the data from genetic assays
indicate that a small amount of ColV appears to be present transiently
in the periplasm during secretion (31).
Bacterial Strains, Plasmids, and Media
lacU169 ara
139 rpsL150
thi-1 recA1 deoC7 flbB5301
ptsF25 relA1), DH5
F
(F
/endA1
hsdR17
[rk
mk+]
supE44 thi-1 recA1
gyrA[Nalr] relA1
[lacZYA-argF]U169 deoR [
80
d-lac
(lacZ)M15]), BL21(
DE3) (F
hsds gal
DE3 i21
nin5
PlacUV5 gene 1 [T7RNAP]), D10
(rna10 relA1 spoT1 metB1),
D10-3 (D10, ompT
), ZK796 (MC4100,
tolC::Tn10), pHK11 (pBR322 with
cvaAcvaBcvaC and cvi),
pHK11-1 (pHK11, cvaC::Tn5), pHK11-4 (pHK11,
cvaB::Tn5), pHK11-8 (pHK11,
cvaA::Tn5), pHK22 (pACYC184 with
cvaAcvaBcvaC and cvi), and
pHK22-6 (pHK22, cvaC::Tn5) were laboratory stocks
or obtained from other investigators (26, 27, 31, 35). TB medium (10 g
of tryptone and 8 g of NaCl/liter) was used as both liquid and
solid growth media except where noted. Antibiotics were used at the
following final concentrations (µg/ml): ampicillin, 200;
chloramphenicol, 30; kanamycin, 50; and tetracycline, 15.
-GGGAATTC
AAAGGTTCCGTTCAGGACG-3
(underline indicates a
-independent transcriptional
terminator); and primer 2, 5
-CTCCTGCAGTATCCGATAAGATAAAAAGGAGAT-3
,
were used to generate a 350-base pair polymerase chain reaction
fragment from template plasmid pHK11-1. This fragment and vector pT7-6
were each digested with EcoRI and PstI, and then
appropriate fragments were ligated to form pXZ5 (Fig. 1B).
pXZ10 is another T7 cvaC-1 construct that contains double
stop codons. Primer 3,
5
-GGGAATCTTTTACGGCGGTCGCCTTGACCGCCGAAAGGTTC
GGACG-3
(underline indicates double stop codons) and primer 2 were used to
generate a polymerase chain reaction fragment from template plasmid
pXZ5. This fragment and pT7-6 were digested with EcoRI and
PstI and then ligated to form pXZ10.
Fig. 1.
Organization of ColV operons and restriction
map of plasmid pXZ5. A, ColV operons and the amino acid
sequences of carboxyl-terminal domain of ColV and ColV-1. P,
promoter; eight heterologous residues of ColV-1 are
underlined. B, the 0.35-kilobase
PstI-EcoRI fragment containing the whole
cvaC-1 gene and a
-independent transcriptional terminator
was cloned in pT7-6 to yield plasmid pXZ5.
[View Larger Version of this Image (18K GIF file)]
-dipyridyl (for inducing the ColV transporters,
which are iron-regulated) was added for 1 h, and then 2 ml of
cells was centrifuged for 30 s. The cell pellet was washed and
resuspended with 2 ml of M9 medium containing 19 amino acids and
appropriate antibiotics. After cell growth for 40 min at 37 °C with
shaking, 0.5 mM
isopropyl-1-thio-
-D-galactopyranoside was added for 20
min, and then rifampicin was added to 200 µg/ml. The culture was kept
at 42 °C for 10 min and then shifted to 37 °C for an additional
20 min. The cells were labeled by adding 50 µCi/ml
[35S]methionine for 5 min. After centrifugation, the cell
pellet was resuspended in the sample buffer, boiled, and subjected to
gel electrophoresis. To detect the extracellular ColV-1, the cells were
labeled for 5 min and chased with cold methionine (0.1%) for 30 min.
Following centrifugation, the supernatant was precipitated with
ice-cold trichloroacetic acid (TCA) to a final concentration of 10%,
and after centrifugation the pellet was washed with ice-cold acetone,
dried, dissolved in sample buffer, and analyzed.
DE3)/pXZ5/pHK22-6 cells were
pulse-labeled for 10 s and chased by the addition of stop solution
(final concentration, 0.1% methionine and 100 µg/ml tetracycline) to
stop new synthesis of overproduced product. 150 µl of cell culture
samples was collected and precipitated by ice-cold TCA.
ColV-1 Can Be Efficiently Processed and Secreted into the
Extracellular Medium
DE3)/pXZ5 (Fig.
2A, lane 1). In the presence of
CvaA and CvaB transporters, ColV-1 was processed (Fig. 2A, lane
2) and secreted into the extracellular medium (Fig. 2A,
lanes 3 and 4). The precursor and the processed form of
ColV-1 could each be immunoprecipitated by ColV peptide antibody (data
not shown). Their migration difference provides a convenient criterion
for the identification of the processing of ColV-1. The processing was
rapid and efficient (Fig. 2B). More than 50% of the T7
promoter-expressed ColV-1 precursor was processed within 1 min (Fig.
2A, lane 4).
Fig. 2.
ColV-1 can be efficiently processed and
secreted into the extracellular medium. A, Cells were grown,
labeled, and processed as described under ``Experimental
Procedures.'' Lane 1, in vivo labeled whole cell sample of
BL21(
DE3)/pXZ5. Lane 3, TCA-precipitated sample of the
culture medium of BL21(
DE3)/pXZ5/pHK22-6. Lane 2,
mixture of samples in lanes 1 and 3. Lane
4, twice the amount of sample in lane 3. B,
kinetics of ColV-1 processing in vivo. Strain
BL21(
DE3)/pXZ5/pHK22-6 was used for pulse chase as described under
``Experimental Procedures.''
[View Larger Version of this Image (26K GIF file)]
Fig. 3.
The processing of ColV-1 required soluble
factor and membrane integrity. A, the processing assay was
carried out as described under ``Experimental Procedures.'' All
reaction mixtures (100 µl) were incubated at 37 °C for 15 min.
Membrane vesicles were reisolated by centrifugation, dissolved in
sample buffer, and submitted to SDS-polyacrylamide gel electrophoresis.
Lane 1, ColV-1 precursor; lane 2, reaction
without S100 added. In lanes 3-5, S100 from D10/pHK11-1
(cvaA+cvaB+tolC+)
was added; in lane 6, S100 from strain D10 (wild type,
cvaA
cvaB
) was added.
In lane 7, S100 from D10/pHK11-1 was added without membrane
vesicles. Lane 8, markers for precursor and mature forms of
ColV-1. B, cell-free T7 transcription-translation mixture of
ColV-1 and in vitro assay mixtures with membrane vesicles
from MC4100 or MC4100/pHK11-1 were pretreated with preimmune serum
(lanes 1, 3, and 5) and then precipitated by ColV
peptide antibodies (lanes 2, 4, and 6).
C, membrane integrity is required for processing. Lane
1, TCA precipitate of total in vitro assay mixture with
membrane vesicles from MC4100/pHK11-1. Lane 2, membrane
vesicle was pretreated with 2.5% OG then was diluted 5-fold in the
assay. Lane 3, same as lane 2, with addition of 4
µg of leader peptidase (SPase I). D, titration of OG and
Triton X-100. Membrane vesicles from MC4100/pHK11-1 were pretreated
with OG and Triton X-100 in the concentration as indicated and then
were diluted 12.5 times in the assay. Lane 1, ColV-1
precursor.
[View Larger Version of this Image (27K GIF file)]
) together
with its processed form (ColV-1
) in MC4100/pHK11 membrane vesicles
(lane 6) could be immunoprecipitated by ColV peptide
antibodies. Therefore, this band is probably a read-through product of
ColV-1, because a stem loop structure (
-independent
transcription factor) lies right behind the translational stop codon of
the cvaC-1 gene during the construction of the plasmid.
(Indeed, a construct containing double stop codons did not yield the
upper band, and the processing was similar (data not shown, but see
Fig. 9).) No processed forms were observed with MC4100 membranes
without the transporter (Fig. 3B, lane 4), confirming that
they were all ColV derivatives and the processing was specific for the
dedicated transporters.
Fig. 9.
CvaA-CvaB membrane vesicles alone have no
processing activity. ColV-1 precursor was generated by using pXZ10
for in vitro synthesis. The in vitro processing
assay was the same as described in Fig. 8. Lane 1, precursor
marker. In lanes 2, 3, and 8-12, MC4100/pHK11
membrane vesicles were added. In lanes 4 and 5,
MC4100 membrane vesicles were added. In lanes 6 and 7,
MC4100/pHK11-4 membrane vesicles were added. Lanes 10-12
were from a separate gel. Energy (ATP-regenerating system) and S100
were added as indicated. The reaction mixtures were incubated at
37 °C for the times indicated.
[View Larger Version of this Image (18K GIF file)]
Fig. 4.
Processing of ColV-1 is inhibited by NEM and
Antipain. A, membrane vesicles from MC4100/pHK11-1 and D10
S100 (125 µg) were used for the in vitro assay as
described under ``Experimental Procedures,'' except that final
reaction volume was reduced to 25 µl, and the reaction mixtures were
stopped by TCA. Reaction mixtures were incubated with the inhibitors as
indicated on ice for 15 min before adding ColV-1 precursor to start
reaction. Lane 1, precursor of ColV-1. B, both
membrane vesicles and soluble factors are sensitive to NEM. S100 and
membranes were treated with 1 mM NEM at 0 °C for 20 min;
10 mM dithiothreitol was added after incubation
(lanes 3 and 5) or during incubation (lanes
4 and 6) to prevent the NEM action; and then whole
mixture each was dialyzed for 3 h at 4 °C before assay.
Lane 1, precursor alone.
[View Larger Version of this Image (31K GIF file)]
Fig. 5.
Preliminary characterization of the soluble
factors. A, the soluble factor is protein in nature, based
on its sensitivity to proteinase K (PK). The assays were as
described in Fig. 4. Lane 1, precursor alone. Treatment of
S100 with proteinase K was at 0 °C for 10 min. 2 mM
phenylmethylsulfonyl fluoride (PMSF) was added after
(lane 3) or before (lane 4) proteinase K (100
µg/ml) treatment. In lane 6, S100 was treated with
micrococcal nuclease (500 µg/ml) and Ca2+ at 25 °C for
30 min, and 5 mM EGTA was added after incubation.
B, Purified GroEL, GroES, DnaK, DnaJ, and GrpE are not the
enhancing factors. The purified proteins were tested in the assay as
indicated. Lane 1, precursor of ColV-1. Lane 2,
125 µg of D10 S100 was added. C, purified SecA, SecB, and
trigger factor (T.F.) do not enhance the processing.
Purified proteins were tested in the assay as indicated. Lane
1, precursor of ColV-1. Lane 2, 125 µg of D10 S100
was added.
[View Larger Version of this Image (39K GIF file)]
cvaB
tolC+),
MC4100/pHK11-8
(cvaA
cvaB+tolC+),
MC4100/pHK11-4
(cvaA+cvaB
tolC+),
and ZK796/pHK11-1
(cvaA+cvaB+tolC
)
were tested for ColV-1 processing activity. There was no processed
ColV-1 with these membrane vesicles lacking any one of the intact
cvaA, cvaB, and tolC gene
products (Fig. 6). Under the same conditions, the
membranes from strain MC4100/pHK11-1
(cvaA+cvaB+tolC+)
yielded the processed form (Fig. 6, lane 6). These results
indicate that the processing is specific: both intact CvaA-CvaB
transporter and TolC protein are required.
Fig. 6.
Processing of ColV-1 is dependent on
CvaA-CvaB transporter and TolC protein. The assay was described in
Fig. 3A. Lane 1, markers for precursor and mature
forms of ColV-1. Lane 2, membranes from ZK796/pHK11-1
(cvaA+cvaB+tolC
).
Lane 3, membranes from MC4100/pHK11-4
(cvaA+cvaB
tolC+).
Lane 4, membranes from MC4100/pHK11-8
(cvaA
cvaB+tolC+).
Lane 5, membranes from strain MC4100 (wild type,
cvaA
cvaB
). Lane
6, membranes from strain MC4100/pHK11-1
(cvaA+cvaB+
tolC+). Lane 7, precursor of ColV-1.
[View Larger Version of this Image (14K GIF file)]
Fig. 7.
Time course of ColV-1 processing. The
in vitro processing assay of ColV-1 used was the same as
described in Fig. 4. The reaction was stopped with 10% TCA. Data are
means ± S.E. (bars); n = 3.
[View Larger Version of this Image (18K GIF file)]
Fig. 8.
Processing of ColV-1 requires energy.
A, small molecules in the in vitro synthesis of
ColV-1 were removed by gel filtration. Fractions containing ColV-1 were
pooled and used for the assay. The reaction mixture (25 µl) contained
12.5 mM Tris-HCl, pH 7.6, 0.25 mM
spermidine-HCl, 2 mM putrescine-HCl, 2 mM
Mg2SO4, 2 mM dithiothreitol, 0.025
A280 unit of membrane vesicles, 100 µg of
S100, and 10 µl of pooled ColV-1 fraction. The reaction mixtures were
incubated at 37 °C for 15 min. Data are means ± S.E.
(bars); n = 3. B, titration of
GTP and ATP on ColV-1 processing . The assay was as described in
A. Data are means ± S.E. (bars);
n = 4.
[View Larger Version of this Image (24K GIF file)]
B
or CvaB
membrane
vesicles, or even with CvaA-CvaB membrane vesicles without energy and
factors at 37 °C for 18 h (Fig. 9, lanes 2-7). Both
precursor and processed forms of ColV-1 were quite stable even after
overnight incubation at 37 °C. When the same film was exposed
longer, a faint processed form-like band is visible in Fig. 9,
lane 3; however, this band is also visible, although weaker
in the precursor sample (data not shown). Even if this is a real
processed band, this activity is more than 6,000 times lower than
that in the optimal condition. When the precursors was incubated with
CvaA and CvaB membrane vesicles and energy without additional soluble
factors, some processing activity (about 2%) was detected (Fig. 9,
lanes 10-12). Since the in vitro synthesized
ColV-1 precursor preparation contained some endogenous soluble protein
(about 5% of the optimal amount), it may contribute to this residual
activity. Hence, taking all of these data together, it is indicated
that both energy and soluble factors are essential for efficient ColV-1
processing, and membranes containing the CvaA and CvaB transporter
alone is not sufficient for the processing; presumably these findings
can be extended to the processing of native ColV processing.
, CvaB
, or TolC
membrane vesicles are also consistent with in vivo data
(31). A tolC
mutant abolishes the majority of
extracellular ColV activity (27), however, processing in the
tolC
strain appears to be similar to the wild
type, albeit slightly slower (31). In our in vitro assay,
there is no detectable processing for ColV-1 without CvaA, CvaB, or
TolC. This difference may be due to the sensitivity of the assays. The
activity of isolated membrane vesicles from the
tolC
mutant strain may also be significantly
affected by either the instability or reduced the expression of
CvaA-CvaB transporters in a tolC
background.3 Furthermore, our in vitro results
also indicate that processing of ColV-1 requires an intact membrane for
the transporters to function, suggesting that the processing may
require a specific conformation of the transporter, precursor, or
peptidase for it to be active in the membranes. Since the mutants we
tested are all null mutants, we cannot yet specify the exact role of
each component, due to the stability effect of the whole complex in the
assay. Missense mutants will be necessary to address this question.
*
This work was supported in part by a grant from the National
Institutes of Health and by equipment grants from Georgia Research
Alliance. The costs of publication of this
article were defrayed in part by the
payment of page charges. The article
must therefore be hereby marked
``advertisement'' in
accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
¶
To whom correspondence should be addressed: Dept. of Biology,
Georgia State University, University Plaza, Alanta, GA 30303. Tel.:
404-651-3109; Fax: 404-651-2509; E-mail: biopct{at}panther.gsu.edu.
1
The abbreviations used are: ABC, ATP-binding
cassette; ColV, colicin V; OG, octylglucoside; TCA, trichloroacetic
acid; NEM, N-ethylmaleimide; GMP-PNP,
guanylyl-imidodiphosphate.
2
X. Zhong and P. C. Tai, unpublished data.
3
X. Zhong, J. Hwang, and P. C. Tai, unpublished
data.
©1996 by The American Society for Biochemistry and Molecular Biology, Inc.
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