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Volume 271, Number 46, Issue of November 15, 1996 pp. 29016-29022
©1996 by The American Society for Biochemistry and Molecular Biology, Inc.

Mutational Analysis of the A-Kinase Anchoring Protein (AKAP)-binding Site on RII
CLASSIFICATION OF SIDE CHAIN DETERMINANTS FOR ANCHORING AND ISOFORM SELECTIVE ASSOCIATION WITH AKAPs*

(Received for publication, July 3, 1996)

Zachary E. Hausken , Mark L. Dell'Acqua , Vincent M. Coghlan Dagger and John D. Scott §

From The Vollum Institute, Oregon Health Sciences University, L-474, Portland, Oregon 97201-3098

ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
FOOTNOTES
Acknowledgments
REFERENCES


ABSTRACT

Compartmentalization of the type II cAMP-dependent protein kinase is conferred by interaction of the regulatory subunit (RII) with <UNL>A</UNL>-<UNL>K</UNL>inase <UNL>A</UNL>nchoring <UNL>P</UNL>roteins (AKAPs). The AKAP-binding site involves amino-terminal residues on each RII protomer and is formed through dimerization. A site-directed mutagenesis strategy was utilized to assess the contribution of individual residues in either RII isoform, RIIalpha or RIIbeta , for interaction with various anchoring proteins. Substitution of long-chain or bulky hydrophobic groups (leucines or phenylalanines) for isoleucines at positions 3 and 5 in RIIalpha decreased AKAP-binding up to 24 ± 3 (n = 8)-fold, whereas introduction of valines had minimal effects. Replacement with hydrophilic residues (serine or asparigine) at both positions abolished AKAP binding. Mutation of proline 6 in RIIalpha reduced binding for four AKAPs (Ht31, MAP2, AKAP79, and AKAP95) from 2.3 to 20-fold (n = 4) whereas introduction of an additional proline at position 6 in RIIbeta increased or conferred binding toward these anchoring proteins. Therefore, we conclude that beta -branched side chains at positions 3 and 5 are favored determinants for AKAP-binding and prolines at positions 6 and 7 increase or stabilize RIIalpha interaction with selected anchoring proteins.


INTRODUCTION

Hormone action is a complicated and dynamic process that requires the efficient transmission of information from the extracellular environment to precise intracellular sites. The speed and precision of these events is a fascinating topic which has engaged researchers for more than three decades. As a result there has been a tremendous emphasis on the elucidation of signal transduction pathways. The work of numerous investigators have shown that many hormone-stimulated signaling cascades emanate from transmembrane receptors at the plasma membrane and proceed through intermediary G-proteins to promote the stimulation of adenylyl cyclase (1, 2). The net effect of this transduction process is the generation of the diffusible second messenger molecule cAMP which binds and activates the cAMP-dependent protein kinase (PKA)1 (3). The kinase is activated by the release of two catalytic subunits (C) from the regulatory (R) subunit-cAMP complex. The free catalytic subunits are then able to phosphorylate a variety of substrate proteins on serine or threonine which contain the consensus sequence Arg-Arg-Xaa-Ser/Thr-Xaa or Lys/Arg-Arg-Xaa-Xaa-Ser/Thr-Xaa (4). An array of PKA isozymes are expressed in mammalian cells, and genes encoding three C subunits (Calpha , Cbeta , and Cgamma ) and four R subunits (RIalpha , RIbeta , RIIalpha , and RIIbeta ) have been identified (reviewed in Ref. 4). Two holoenzyme subtypes called type I and type II are formed by the combination of RI or RII with the C subunits (5, 6).

Although many hormones use parallel pathways to activate PKA, some measure of specificity must be cryptically built into each signaling cascade to ensure that the correct pool of kinase becomes active in the right place and at the right time (7). It is now evident that additional regulatory mechanisms are in place to restrict the subcellular location of active enzyme. In fact, up to 75% of type II PKA is localized to various intracellular sites through association of the regulatory subunit (RII) with protein kinase A anchoring proteins, called AKAPs (reviewed by Rubin (8) and Scott and McCartney (9)). An additional level of selectivity may exist in certain cell types as both RII isoforms, RIIalpha and RIIbeta , seem to preferentially associate with different anchoring proteins (10). For example, follicle-stimulating hormone treatment of rat granulosa cells increases expression of an 80-kDa AKAP which preferentially associates with RIIalpha (11), whereas phosphorylation of bovine RIIbeta by cyclin B/p34cdc2 kinase decreases affinity for the microtubule-associated protein 2 (MAP2) (12).

Our previous studies have shown that RII dimerization is an absolute prerequisite for anchoring and that the AKAP-binding site resided in the amino-terminal 79 residues of RII (13). This model was later refined by Erlichman and colleagues (14), who concluded that sites within the first 50 residues of RIIbeta were sufficient for anchoring. More definitive studies demonstrated that the localization and dimerization determinants were contained in the first 30 residues of each RII protomer (15, 16). In this report we have used a variety of binding assays to monitor the relative affinities of RIIalpha , RIIbeta , and mutants for four AKAPs: Ht31, MAP2, AKAP79, and AKAP95. These studies have allowed us to detect subtle differences in the AKAP-binding preferences of RIIalpha and RIIbeta and ascertain some of the side chain determinants on RII which direct the subcellular location of PKA. Another consequence of this work has been the generation of RIIalpha mutants that are unable to associate with AKAPs in vitro or in situ. It is anticipated that the detailed analysis of these mutants will contribute to our understanding of RII-AKAP interactions and provide new reagents to probe the function of PKA anchoring inside cells.


MATERIALS AND METHODS

Site-directed Mutagenesis of RII

Mutations were created in the 5' end of the RIIalpha coding region by modification of the polymerase chain reaction method of Scharf and colleagues (17). Manipulations were performed on a COY TempCycler using RIIalpha as a template. Degenerate oligonucleotide primers GATATA<UNL>CC<IT>ATG</IT>G</UNL>GCCACATCCCGATCCCGCCGGGGC which encompassed the initiation codon and changed codons 3 and 5 to leucine (CTG), phenylalanine (TTC), valine (GTC), serine (A<UNL><B>G</B></UNL>C), or asparigine (A<UNL><B>AC</B></UNL>) were used to generate an initial set of RIIalpha mutants. Substitution of prolines 6 or 7 with alanine (<UNL><B>G</B></UNL>C<UNL><B>G</B></UNL>) utilized a different primers GATATA<UNL>CC<IT>ATG</IT>G</UNL>GCCACATCGCGATC<UNL><B>G</B></UNL>CG<UNL><B>G</B></UNL>CGGGGCTCACGG. The appropriate 5' primer (100 pmol) was annealed to the RIIalpha cDNA with a common 3' primer TCTCGGGGTATTGTA and Taq polymerase. The reaction mixture was subjected to 30 cycles of polymerase chain reaction (denaturing at 95 °C for 30 s, annealing for at 40 °C at 1.5 min, and extending at 72 °C for 2 min) to create a 644-base pair fragment. After cutting with NcoI and SalI to excise a 90-base pair fragment encompassing the mutation each mutated insert was ligated in-frame with the remainder of the RIIalpha coding region in the bacterial expression plasmid pET11d (Novagen).

A mutation in the RIIbeta coding region changing alanine 6 to proline (<UNL><B>C</B></UNL>CC) was produced with a 5' primer, CGGCCATGGCC<UNL>CAT<IT>ATG</IT></UNL>AGCATCGAGATC<UNL><B>C</B></UNL>CCCCGGGGCTCACGGAG, encompassing the initiation codon of rat RIIbeta , a 3' primer, GTCACCATCATCACCTTG, and Taq polymerase using the rat RIIbeta cDNA as a template. Thirty cycles of polymerase chain reaction (denaturing at 95 °C for 30 s, annealing for at 42 °C at 1.5 min, and extending at 72 °C for 2 min) generated a 585-base pair fragment. This fragment was digested with NdeI and BamHI to excise a 468-base pair insert encompassing the mutation and ligated into the bacterial expression vector pET 11c containing the remainder of rat RIIbeta coding region.

All inserts were sequenced by the method of Sanger (18) to confirm that the correct mutations were made and that the remainder of the coding region was unaltered. Each plasmid was transfected into Escherichia coli BL21 DE3 cells and expression of recombinant protein was induced in the presence of 0.4 mM isopropyl-1-thio-beta -thio-D-galactopyranoside for 3-4 h. Purification of recombinant RII was performed according to the method of Scott and colleagues (13) with the following minor modifications. DNase I treatment of the bacterial cell lysates was omitted and the proteinase inhibitor AEBSF (ICN Biomedicals) was included in the protein storage buffer at a final concentration of 0.1 mM. Concentration of purified proteins was achieved by ultra filtration through 10,000 nominal molecular weight limit regenerated cellulose (Amicon).

RII Overlays

RII overlays were performed according to the method of Hausken and colleagues (19) in the presence of 0.4 µM anchoring inhibitor peptide (DLIEEAAVSRIVDAVIEQVKAAGAY) or a control peptide (DLIEEAAVSR<UNL><B>P</B></UNL>VDAVIEQVKAAGAY) which is unable to block RII binding. RII competition overlays were performed according to the methods of Li and Rubin (16).

AKAP Overlays

An in vitro AKAP overlay was used to probe RII or mutants immobilized on nitrocellulose. Proteins (over a concentration range from 20 to 120 ng) were transferred to nitrocellulose using a Hybri-Slot manifold (BRL) and filters were blocked by incubation in a Tris-buffered saline solution (pH 7.0) containing 5% dry milk, 1% bovine serum albumin at room temperature for 1 h. Filters were incubated with 32P radiolabeled AKAP-kfc fusion proteins (HT31 or MAP2). The AKAP-kfc proteins were phosphorylated by the C subunit of PKA on a consensus phosphorylation site fused to the carboxyl terminus of each protein (20). Incubation, washing, and detection procedures were identical to those described for the RII overlay (19).

AKAP peptide overlays were performed with biotinylated peptides to the RII-binding domains of Ht31 (biotin-DLIEEAAVSRIVDAVIEQVKAAGAY), AKAP95 (biotin-ETPEEVAAEVLAEVITAAVKAVEG D), or AKAP79 (biotin-YETLLIETASSLVKNALQLSIEQL). Filters were washed extensively in excess TBST buffer (three times) to remove the unbound peptides. Bound peptides were detected by incubation with streptavidin-conjugated horseradish peroxidase (0.1 µg/ml) in TBST for 1 h and visualized by chemiluminescence. Films were digitally scanned and intensities were measured using the NIH image 1.55 program.

In Situ Overlay

Human osteosarcoma MG-63 cells were grown on coverslips following the procedure as described (21). Cells were fixed with neutral formaldehyde (3.7%), permeablized with 100% methanol, and blocked with 0.5% bovine serum albumin/phosphate-buffered saline (pH 7.4) for 1 h at 4 °C. Cells were incubated with RII or mutants (80 nM) for 3 h at room temperature. Unbound RII was removed by washing in excess with phosphate-buffered saline three times (30 min). Bound RII was detected immunochemically as described previously (22) using affinity purified RII antibodies (1:500). Cells were examined using a Leica confocal laser scanning system equipped with a Leitz Fluovert-FU inverted microscope and an argon/krypton laser. Confocal sections were between 1.5 and 2-µm absolute thickness. Specificity of immunostaining was confirmed by incubating control cultures with secondary antisera alone.

Co-Purification of RII·AKAP Complexes

Cell lysates (approximately 300 µg in 100 µl) from human embryonic kidney 293 cells overexpressing Ht31 were incubated with equal amounts of RIIalpha or RIIalpha I3S,I5S (5 µg). Purification of the RII·AKAP complexes was achieved by incubation with cAMP-agarose overnight at 4 °C. The affinity resin was washed in 20 column volumes of hypotonic buffer at 4 °C. RII was eluted with buffer containing 75 mM cAMP (1 ml) and co-purifying Ht31 was detected by Western blot with rabbit antiserum (1:4000).


RESULTS

Expression and Characterization of RII Mutants

RII mutants were expressed in bacteria and the properties of each recombinant protein were compared to wild-type RIIalpha . Each protein was purified to homogeneity by cAMP-agarose affinity chromatography, confirming that all of the mutants were able to bind cAMP. The mobility of each mutant was similar to wild-type RIIalpha on SDS-polyacrylamide gel electrophoresis and each protein was detected at a position which was consistent with the migration of the RII dimer on nondenaturing gels (data not shown). Previous studies have shown that monomeric or incorrectly folded RII forms migrate with a distinct mobility on nondenaturing gels (15). Other studies confirmed that each RII mutant was efficiently phosphorylated by the C subunit of PKA in vitro (data not shown). Collectively, these observations suggest that mutation of sites within the extreme amino-terminal regions of residues of RIIalpha or RIIbeta have no measurable effects on certain well characterized functions of the regulatory subunits. This observation is consistent with studies showing that removal of the amino-terminal domains from RI or RII generates fragments that are functional in cAMP binding and inhibition of the C subunit (13, 23, 24, 25, 26).


Fig. 1. Hydrophobic side chains at positions 3 and 5 of RII are determinants for AKAP binding. A series of five mutants were generated to probe the requirement of hydrophobic amino acids at positions 3 and 5 in each RII protomer for anchoring. A, amino acids are designated by the single letter code and each substitution is indicated. Aliquots of purified RIIalpha or mutants were immobilized onto nitrocellulose filters. Individual filters were probed with excess radiolabeled Ht31 (B) or MAP2 (C) (specific activities ranging from 2.1 × 105 to 1.5 × 105 cpm/nmol). Detection of binding was by autoradiography and was measured by densitometry of the autoradiographs. A range of RII or mutant concentrations were used to determine the linear range of binding. The degree of Ht31 (B) or MAP2 (C) binding at a single concentration RIIalpha or mutants (25 ng for Ht31 and 12.5 ng for MAP2) is presented. The accumulated data of six individual experiments is presented as a percent binding compared to wild-type RIIalpha .
[View Larger Version of this Image (27K GIF file)]


Substitution of Hydrophobic Side Chains

While RII dimerization is a prerequisite for anchoring, we and others have demonstrated that discrete regions within the first 30 amino acids of RII participate in AKAP binding and homodimer formation (13, 15, 16). The first five residues of each RII protomer are absolutely required for anchoring and there is a 6-fold decrease in binding when isoleucines 3 and 5 are substituted to alanine (15). This suggests that AKAP-binding specificity may be conferred, in part, by the nature of the hydrophobic groups at these positions. To test this hypothesis, three RII mutants were generated where different hydrophobic side chains were introduced at positions 3 and 5 (Fig. 1A). Substitution of isoleucines with valine investigated whether a beta -branched hydrophobic group was necessary for AKAP-binding, whereas substitution with leucine or phenylalanine tested the functionality of long-chain or bulky hydrophobic groups (Fig. 1A). Changes in AKAP binding were measured by a semi-quantitative overlay procedure which we have previously used to monitor changes in the anchoring affinities of RII mutants (15, 19).

Introduction of leucine at position 3 decreased Ht31 binding by 6 ± 4% (n = 6) when compared to wild-type RIIalpha (Fig. 1B). Substitution at position 5 decreased binding by 32 ± 8% (n = 6). Surprisingly, single substitution of either leucine slightly enhanced MAP2 binding (Fig. 1C). However, binding to either Ht31 or MAP2 was markedly reduced when both isoleucines were replaced with leucine. Ht31 binding was decreased by 74 ± 5% (n = 6) and MAP2 binding was decreased by 69 ± 8% (n = 6) (Fig. 1, B and C). These results suggest beta -branched groups at positions 3 and 5 are critical for AKAP binding. Further support for this hypothesis was provided by the analysis of RII mutants where phenylalanine was introduced at both positions. The intent of these experiments was to test the tolerance of bulky hydrophobic groups at both positions. RIIalpha I3F,I5F bound both AKAPs to a lesser extent than the double leucine mutant (Fig. 1, B and C). Ht31 binding was decreased 86 ± 2% (n = 6), whereas a 94 ± 2% (n = 6) decrease in MAP2 binding was recorded (Fig. 1C). Presumably, the diminished MAP2 binding affinity of RIIalpha I3F,I5F reflects subtle topological differences in the RII-binding sites on MAP2 and Ht31. This provides indirect evidence for the notion that there may be slight differences in the RII binding preferences of individual AKAPs (27, 28). However, this effect may be enhanced by the introduction of four bulky hydrophobic side chains per RII dimer which combine to sterically hinder vital contacts between the regulatory subunit and MAP2.

In order to test whether the length of a beta -branched side chain was important for anchoring we measured the AKAP-binding affinity of RIIalpha mutants with valines substituted at positions 3 and 5. Introduction of valine minimally decreased Ht31 binding affinity by 28 ± 6% (n = 6) and MAP2 binding by 29 ± 12% (n = 6) (Fig. 1, B and C). Thus, the beta -branched character of the isoleucine and valine side chains rather than the length of the aliphatic chain seems to confer an advantage in AKAP binding. It is likely that these branched side chains interact with a complimentary hydrophobic face on the amphipathic helix of the anchoring protein. This view is supported by mutagenesis studies showing that hydrophobic side chains in the amphipathic helix region of AKAP75 participate in RII binding (16).

Hydrophilic Substitutions at Positions 3 and 5 Abolish AKAP Binding

To establish whether side chain character was a contributing factor in anchoring, neutral or hydrophilic side chains were introduced at positions 3 and 5 in each RII protomer (Fig. 2A). These RII mutants exhibited a dramatic decrease in AKAP binding (Fig. 2, B and C). For example, substitution of serine at both positions reduced Ht31 binding by 96 ± 1% (n = 6) and reduced MAP2 binding by 98 ± 1% (n = 6) as assessed by a semi-quantitative RII overlay (Fig. 2, B and C). Introduction of asparagine at either position gave similar results (Fig. 2, B and C). To confirm these measurements by a second independent method, we used an RII competition assay (16). Various concentrations of RIIalpha or mutants (1 nM to 1 µM) were incubated with radiolabeled RIIalpha (5 nM) and solid-phase Ht31 binding was measured by standard techniques. RIIalpha I3A,I5A began to compete with wild-type RIIalpha for Ht31 binding at higher concentrations (Fig. 2D). However, RIIalpha I3S,I5S was unable to compete with wild-type RIIalpha even at a 200-fold molar excess of mutant (Fig. 2D). Further analysis demonstrated that 32P radiolabeled RIIalpha I3S,I5S was unable to bind AKAPs expressed in MG-63 osteosarcoma cells as assessed by the RII overlay, whereas the wild-type protein detected proteins ranging in size from 97 to 220 kDa (Fig. 2E). In summary, these experiments show that RIIalpha I3S,I5S is unable to bind AKAPs as assessed by several variations of the solid-phase overlay assay (19, 29).


Fig. 2. Hydrophilic side chains at positions 3 and 5 abolish AKAP binding. A series of four RIIalpha mutants were generated to examine the effect of hydrophilic side chains in the AKAP-binding site. A, amino acids are designated by the single letter code and the position of each substitution is indicated. Aliquots of purified RIIalpha or mutants were immobilized onto nitrocellulose filters. Individual filters were probed with excess radiolabeled Ht31 (B) or MAP2 (C) (specific activities ranging from 2.1 × 105 to 1.5 × 105 cpm/nmol). Detection of binding was by autoradiography and was measured by densitometry of the autoradiographs. A range of RIIalpha or mutant concentrations were used to determine the linear range of binding. The degree of Ht31 (B) or MAP2 (C) binding at a single concentration of RIIalpha or mutants (25 ng for Ht31 and 12.5 ng for MAP2) is presented. The accumulated data of six individual experiments is presented as percent binding compared to wild-type RIIalpha . D, competition binding assay developed by Li and Rubin (16) was used to demonstrate that RIIalpha I3S,I5S was unable to compete with wild-type RIIalpha for binding to immobilized Ht31 (25 ng). Competition profiles over a range of concentrations (1 nM to 1 µM) of RIIalpha (bullet ), RIIalpha I3S,I5S (---), and RIIalpha I3A,I5A (open circle ) are indicated. E, solid-phase binding of RIIalpha and RIIalpha I3S,I5S to a variety of AKAPs expressed in MG-63 osteosarcoma cells was assessed by the standard overlay procedure (19). RII binding was detected by autoradiography.
[View Larger Version of this Image (26K GIF file)]


Additional experiments were conducted to determine whether RIIalpha I3S,I5S could interact with AKAPs in solution. RIIalpha I3S,I5S or wild-type RIIalpha were mixed with cell extracts from HEK 293 cells expressing Ht31 and complexes were isolated by affinity chromatography on cAMP-agarose (Fig. 3A). Ht31 co-purified with wild-type RII (Fig. 3B) but not with the RIIalpha I3S,I5S mutant (Fig. 3C). Similar results were obtained when co-purification experiments were performed with another anchoring protein AKAP79 (data not shown). In order to examine the properties of RIIalpha I3S,I5S in a more cellular context, we used an in situ technique where RII or the mutant was used to detect anchoring sites in cells (30, 31). In situ binding of wild-type RIIalpha to sites in the nucleus, cytoplasmic, and perinuclear regions was detected in MG-63 human osteosarcoma cells (Fig. 4A). In contrast, very little staining was detected in cells incubated with the same concentration of RIIalpha I3S,I5S (Fig. 4C). All RII binding was blocked when overlays were performed in the presence of excess (0.4 µM) anchoring inhibitor peptide (Fig. 4D). There is no background staining in the experiments because endogenous human RII is not detected by the antibody (Fig. 4B). Collectively, these studies show that RIIalpha I3S,I5S is a non-localizable RII mutant.


Fig. 3. Co-purification of RII·AKAP complexes. Equal amounts (5 µg) of RIIalpha or RIIalpha I3S,I5S were incubated with cell lysates from HEK 293 cells that overexpress a recombinant fragment of Ht31. A, RII or the mutant was purified by affinity chromatography on cAMP-agarose and proteins eluted with 75 mM cAMP were separated by gel electrophoresis on a 10% (w/v) SDS-polyacrylamide electrophoresis gel. Co-purification of Ht31 protein was detected by Western blot (41) from fractions incubated with wild-type RIIalpha (B) and RIIalpha I3S,I5S (C). The source of each sample is indicated above each lane.
[View Larger Version of this Image (50K GIF file)]



Fig. 4. Fluorescent detection of RII binding in situ. Human MG-63 osteosarcoma cells were seeded on coverslips and grown in culture for 36 h. After fixation with 3.7% formaldehyde and permeablization with 100% (w/v) methanol, unoccupied RII-binding sites were detected by an in situ overlay procedure that as described under "Materials and Methods." Detection of anchored murine RII was achieved by indirect immunofluorescence using fluorescein-conjugated rabbit anti-goat secondary antibodies (1:100 dilution). Cells were incubated with the same concentration (80 nM) of wild-type murine RIIalpha 8 (A), murine RIIalpha I3S,I5S (B), murine RIIalpha  + 1 µM anchoring inhibitor peptide (C), and in the presence of affinity purified anti-murine RII antisera alone (D) (1:2,000 dilution).
[View Larger Version of this Image (96K GIF file)]


RII Isoform Selective AKAP Binding

Several years ago, Liesner and colleagues (10) suggested that both RII isoforms, RIIalpha and RIIbeta , had different AKAP binding preferences. These investigators concluded that RIIalpha had a 6-fold preference for MAP2 whereas RIIbeta had a 2-fold preference for AKAP79 (10). This finding could have important physiological implications for PKA anchoring as it suggests a mechanism for differential localization of type II PKA isoforms within cells. Sequence comparison of RIIalpha and RIIbeta show that there is some divergence within the first 10 amino acids of both proteins (Fig. 5A). On the basis of this and our previous studies with RIIalpha we proposed that isoform selective AKAP binding determinants should be located in the extreme NH2-terminal regions of each RII protomer. A testable aspect of this theory is that RIIalpha and RIIbeta should have measurable differences in their binding affinities for individual AKAPs. Therefore, we decided to use a reverse overlay procedure to screen the RII-binding regions of two AKAPs for isoform selective RII binding preferences (19). Peptides from Ht31 and AKAP95 bound RIIalpha (2 to 0.35 pmol) with equal affinity, whereas RIIbeta was unable to bind the AKAP95 peptide even at the highest concentrations used in the assay (Fig. 5B).


Fig. 5. Isoform differences and determinants for AKAP binding. The first 10 residues of RIIalpha and RIIbeta are aligned. A, amino acids are indicated in the single letter code. A family of RII mutants were generated to examine the role of prolines as determinants for isoform selective association with AKAPs. B, the binding properties of wild-type RIIalpha and RIIbeta (over a range of concentrations from 2 to 0.35 pmol) were compared by a solid-phase AKAP overlay using biotinylated Ht31 peptide or AKAP95 peptides (0.4 µM) as probes. Biotinylated peptide was detected by chemiluminescence using streptavidin-coupled horseradish peroxidase. Using similar approaches the binding properties of both RII isoforms and three mutants were measured using radiolabeled Ht31 (C) or radiolabeled MAP2 (D), biotinylated AKAP79 peptide (E), and biotinylated AKAP 95 peptide (F) as probes. Panels C and D are representative experiments from a series of 8 individual measurements that depict binding properties of radiolabeled AKAP proteins (specific activities ranging from 2.1 × 105 to 1.5 × 105 cpm/nmol) over a range of concentrations from 15 to 125 ng. Detection of RIIalpha (black-square), RIIbeta (black-triangle), RIIalpha P6A (black-diamond ), RIIalpha P7A (bullet ), and RIIbeta A6P (+) was by autoradiography and quantitation was achieved by densitometry using the NIH 1.5 scan plus program. Panels E and F are representative experiments from four individual measurements that depict the binding properties of both RII isoforms and mutants at a single concentration (80 ng) to AKAP79 peptide (E) and AKAP95 peptide (F). Detection of bound peptide was as described above. The results are presented as the percentage of wild-type RIIalpha binding.
[View Larger Version of this Image (30K GIF file)]


Two side chains in the first 10 amino acids of RIIalpha are not conserved in RIIbeta (Fig. 5A). Glutamine at position 4 was considered unlikely to represent an isoform selective anchoring determinant because mutations at this position to alanine have no effect on AKAP binding for either RII isoform (15, 16). However, RIIalpha contains a proline pair at positions 6 and 7 that is not present in RIIbeta . To test the role of these prolines two RIIalpha mutants were generated: RIIalpha P6A where proline 6 was substituted with alanine and RIIalpha P7A where proline 7 was substituted for alanine. RIIalpha P6A exhibited reduced binding for all of the AKAPs tested (Ht31, MAP2, AKAP79, and AKAP95) as assessed by the semi-quantitative overlay assay (Fig. 5, C-F). Decreased AKAP binding was measured in a range from 57 ± 8% (n = 8) for Ht31 to 97% (n = 4) for AKAP95. This was supported by band shift analysis confirming that RIIalpha P6A was unable to shift the mobility of an Ht31 fragment even at a 4-fold higher concentration than wild-type RIIalpha (data not shown). In contrast, substitution of proline 7 had only a modest effect on binding to any of the AKAPs tested (Fig. 5, C-F).

In order to test whether the prolyl pair could enhance AKAP binding affinity, reciprocal experiments were performed where an additional proline was introduced at the corresponding position in RIIbeta . This mutant, RIIbeta A6P, exhibited increased Ht31 binding affinity by a factor of 1.4 ± 0.1-fold (n = 8) relative to wild-type RIIbeta (Fig. 5C). Comparable increases in binding to MAP2 and AKAP79 were also observed (Fig. 5, D and E). Moreover, the RIIbeta A6P mutation conferred limited AKAP95 binding which was 26% (n = 4) of that observed for RIIalpha (Fig. 5F).

The AKAP binding properties of these RII isoform mutants were further tested using the in situ overlay. Significant nuclear, cytoplasmic, and perinuclear staining was detected in cells probed with wild-type RIIalpha and RIIalpha P7A (Fig. 6, A and C). However, staining was excluded from the nucleus and decreased in cytoplasmic and perinuclear regions when RIIalpha P6A or RIIbeta were used as probes (Fig. 6, B and D). These results are consistent with the decreased AKAP binding observed for RIIalpha P6A and RIIbeta relative to RIIalpha in vitro. Our finding that RIIbeta A6P binds AKAPs with higher affinity than RIIbeta wild-type is also supported by the in situ overlay technique which detects increased perinuclear staining with RIIbeta A6P as probe (Fig. 6E). In contrast, little, if any nuclear staining was detected for RIIbeta A6P despite the binding to AKAP95 detected by peptide overlay. This discrepancy could be accounted for by differences in the two experimental techniques combined with the 4-fold lower AKAP95 binding detected for this mutant relative to RIIalpha wild-type. Nevertheless, the results of both in vitro and in situ binding studies suggest that the prolines at positions 6 and 7 play a crucial role in determining the AKAP binding specificity for RIIalpha .


Fig. 6. Mutation of proline 6 impairs RII anchoring in situ. Human MG-63 osteosarcoma cells were seeded on coverslips and grown in culture for 36 h. Cells were treated under the same conditions as described in the legend of Fig. 5. Cells were incubated with RII or mutants at a concentration of 80 nM murine RIIalpha (A), RIIalpha P6A (B), RIIalpha P7A (C), RIIbeta (D), RIIbeta A6P (E), and RIIalpha  + 0.4 µM anchoring inhibitor peptide (F). Detection of anchored murine RII was achieved by indirect immunofluorescence using fluorescein-conjugated rabbit anti-goat secondary antibodies (1:100 dilution).
[View Larger Version of this Image (89K GIF file)]



DISCUSSION

The mutagenesis and binding studies presented in this report expand our original observation that AKAP binding determinants are located in the extreme amino-terminal regions of each RII protomer (13, 15). More specifically we have extended our original observations in three ways: beta -branched side chains at positions 3 and 5 are positive determinants for AKAP binding, the introduction of hydrophilic side chains such as serine or asparigine completely abolish anchoring, and a proline-proline pair at positions 6 and 7 increase or stabilize RIIalpha interaction with selected anchoring proteins. Our first postulate is supported by evidence that removal of isoleucine and replacement with its non-branched isomer, leucine, significantly reduced anchoring. This observation is compatible with studies by Glanz et al. (32) who have shown that leucines and isoleucines on AKAP75 are required for RII binding. Hence, it is possible that the isoleucine side chains on RII interlock with their reciprocal partners on a hydrophobic face of the AKAP. This type of docking may be similar to the hydrophobic interactions that maintain the leucine zipper in transcription factors such as C/EBP and CREB (33, 34). However, it should be noted that the protein-protein interactions required for RII-AKAP interactions are more complicated and involve three polypeptide chains: the amphipathic helix on the AKAP and both RII protomers. Other investigators have proposed that downstream sites provide additional contact with the anchoring protein (16). While this seems a likely conclusion, the extent and contribution of these additional sites for high affinity RII-AKAP interaction is unclear as the RIIalpha 13S,I5S mutant has no measurable AKAP binding affinity.

Our second postulate is that non-localizable mutants, such as RIIalpha I3S,I5S, may turn out to be valuable reagents to elucidate AKAP function by acting as dominant-negative effectors of PKA anchoring when expressed in mammalian cells. The RIIalpha I3S,I5S protein is likely to be suited for this function as it seems to retain the wild-type functions such as responsiveness to cAMP and inhibition of the C subunit. Furthermore, all indications suggest that RII I3S,I5S is a stably folded protein implying that this mutant RII form will have a normal half-life in cells. Potentially, a non-localizable RII subunit will be a more versatile reagent than anchoring inhibitor peptides which are currently being used to compete with AKAPs to displace the type II PKA from anchoring sites (35, 36). The predominant limitation of these peptides is their poor membrane permeability and questionable stability inside cells. Another advantage of RIIalpha I3S,I5S as a probe to investigate the physiological significance of PKA anchoring may be to overexpress the non-localizable mutant in cells which lack R subunits. This type of venture is now possible as McKnight and colleagues (37, 38, 39, 40) have created mouse strains where individual PKA genes have been knocked out. The availability of cell lines derived from these mice will make it possible to examine the physiological roles of individual R subunits and the effects of an anchoring mutant such as RIIalpha I3S,I5S on selected cAMP responsive events.

Our third postulate proposes that prolines at positions 6 and 7 adapt RIIalpha for preferential association with certain AKAPs. Specifically, our results suggest that replacement of proline 6 with alanine (RIIalpha P6A) decreases the preferential binding of RIIalpha for four anchoring proteins. The most dramatic reduction in binding was measured for the nuclear matrix associated anchoring protein AKAP95 (31). This decrease in binding to AKAP95 is supported by the in situ overlay studies demonstrating that RIIalpha P6A is unable to occupy nuclear binding sites in MG-63 cells. Overall, RIIalpha P6A exhibits AKAP binding properties more similar to those observed for RIIbeta including staining of exclusively perinuclear regions in MG-63 cells. Correspondingly, introduction of a proline pair at the equivalent position in RIIbeta results in a mutant protein (RIIbeta A6P) which exhibits an AKAP binding spectrum similar to RIIalpha including acquired binding to AKAP95.

Surprisingly, our results show that AKAP79 binds RIIalpha with a 2-fold preference over RIIbeta . However, a previous study detected a 2-fold preference of the bovine homolog AKAP75 for RIIbeta (10). These differences may be attributed to trace amounts of RIIalpha in the brain preparations used for the previous study or differences in the detection methods used in either study. Nevertheless, we propose that the structural characteristics imposed by tandem prolines at positions 6 and 7 play a role in determining the AKAP binding specificity for RIIalpha . The occurrence of the proline pair may allow RIIalpha to be the preferred binding partner for certain anchoring proteins such as AKAP95 or a 80-kDa anchoring protein that is induced in granulosa cells upon exposure to follicle-stimulating hormone (40). Although a precise structural explanation for these observations is not available, it seems plausible that a proline at position 6 may increase RIIalpha affinity for certain AKAPs in one of two ways. Either through direct contact of proline 6 with the anchoring proteins, or through the added rigidity of the imino peptide linkage between isoleucine 5 and proline 6 functioning to precisely orient AKAP binding determinants such as isoleucines 3 and 5. Some support for this later explanation is provided by molecular modeling of the NH2-terminal region of RII which suggests proline 6 may occupy a specific position within a beta -turn.

Despite the role that the prolines may play in positioning anchoring determinants, it is clear that the orientation of the RII dimer is also an essential component of the AKAP-binding site as it controls the spatial organization of isoleucines 3 and 5 (15). Unfortunately, none of the studies to date have been able to distinguish between a parallel or antiparallel orientation for the RII dimer (13, 14, 15, 16). A parallel dimer would cluster the essential isoleucines on each RII protomer to form a hydrophobic face that contacts the AKAP, while the rigidity of an imino linkage provided by each proline may function to segregate the anchoring determinants at positions 3 and 5 from the downstream residues required for homodimer formation (Fig. 7A). In contrast, an antiparallel orientation would place a pair of isoleucines at either end of the AKAP-binding site. In this context, prolines may participate in a beta -turn that orients the isoleucine pair on each RII protomer (Fig. 7B). If the antiparallel model is correct the additional proline present in RIIalpha would lock each RII protomer into a conformation where the upstream anchoring determinants are folded back on the remainder of the dimerization surface. This conformation could increase the surface area available for contact with the AKAP. Undoubtedly, the completion of structural studies to solve the solution structure of an RII fragment complexed with the Ht31 peptide should define the orientation of the RII dimer and the precise topology of the of AKAP-binding surfaces on RII.


Fig. 7. Models for the RII-AKAP interaction. A schematic diagram depicting two possible topologies of the RII-AKAP interaction. A, parallel orientation of the RII dimer-AKAP interaction domain. Isoleucine side chains are depicted by circles with the open circles representing the beta -branch methyl group. B, anti-parallel orientation of the RII dimer-AKAP interaction domain.
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FOOTNOTES

*   This work was supported by National Institutes of Health Grant DK 44239 (to J. D. S.). The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
Dagger    Current address: R.S. Dow Neurological Sciences Institute, 1120 NW 20th Ave., Portland OR 97209.
§   To whom correspondence should be addressed: The Vollum Institute, Oregon Health Sciences University, L-474, 3181 S.W. Sam Jackson Park Rd., Portland, OR 97201-3098. Tel.: 503-494-4652; Fax: 503-494-2285.
1   The abbreviations used are: PKA, protein kinase A; MAP2, microtubule-associated protein 2; AKAP, A-kinase anchoring protein.

Acknowledgments

We thank our colleagues at the Vollum Institute for critical evaluation of this manuscript.


REFERENCES

  1. Wedegaertner, P. B., Wilson, P. T., and Bourne, H. R. (1995) J. Biol. Chem. 270, 503-506 [Free Full Text]
  2. Taussig, R., and Gilman, A. G. (1995) J. Biol. Chem. 270, 1-4 [Free Full Text]
  3. Walsh, D. A., Perkins, J. P., and Krebs, E. G. (1968) J. Biol. Chem. 243, 3763-3765 [Abstract/Free Full Text]
  4. Scott, J. D. (1991) Pharmacol. Ther. 50, 123-145 [CrossRef][Medline] [Order article via Infotrieve]
  5. Brostrom, C. O., Corbin, J. D., King, C. A., and Krebs, E. G. (1971) Proc. Natl. Acad. Sci. U. S. A. 68, 2444-2447 [Abstract/Free Full Text]
  6. Corbin, J. D., and Keely, S. L. (1977) J. Biol. Chem. 252, 910-918 [Abstract/Free Full Text]
  7. Harper, J. F., Haddox, M. K., Johanson, R., Hanley, R. M., and Steiner, A. L. (1985) Vitam. Horm. 42, 197-252 [Medline] [Order article via Infotrieve]
  8. Rubin, C. S. (1994) Biochim. Biophys. Acta 1224, 467-479 [Medline] [Order article via Infotrieve]
  9. Scott, J. D., and McCartney, S. (1994) Mol. Endocr. 8, 5-13 [CrossRef][Medline] [Order article via Infotrieve]
  10. Leiser, M., Rubin, C. S., and Erlichman, J. (1986) J. Biol. Chem. 261, 1904-1908 [Abstract/Free Full Text]
  11. Carr, D. W., DeManno, D. A., Atwood, A., Hunzicker-Dunn, M., and Scott, J. D. (1993) J. Biol. Chem. 268, 20729-20732 [Abstract/Free Full Text]
  12. Keryer, G., Luo, Z., Cavadore, J. C., Erlichman, J., and Bornens, M. (1993) Proc. Natl. Acad. Sci. U. S. A. 90, 5418-5422 [Abstract/Free Full Text]
  13. Scott, J. D., Stofko, R. E., McDonald, J. R., Comer, J. D., Vitalis, E. A., and Mangili, J. A. (1990) J. Biol. Chem. 265, 21561-21566 [Abstract/Free Full Text]
  14. Luo, Z., Shafit-Zagardo, B., and Erlichman, J. (1990) J. Biol. Chem. 265, 21804-21810 [Abstract/Free Full Text]
  15. Hausken, Z. E., Coghlan, V. M., Hasting, C. A. S., Reimann, E. M., and Scott, J. D. (1994) J. Biol. Chem. 269, 24245-24251 [Abstract/Free Full Text]
  16. Li, Y., and Rubin, C. S. (1995) J. Biol. Chem. 270, 1935-1944 [Abstract/Free Full Text]
  17. Scharf, S. J., Horn, G. T., and Erlich, H. A. (1986) Science 233, 1076-1078 [Abstract/Free Full Text]
  18. Sanger, F., Nicklen, S., and Coulson, A. R. (1977) Proc. Natl. Acad. Sci. U. S. A. 74, 5463-5467 [Abstract/Free Full Text]
  19. Hausken, Z. E., Coghlan, V. M., and Scott, J. D. (1996) in Overlay, Ligand Blotting, and Band-shift Techniques to Study Kinase Anchoring, Humana Press, Inc., Clifton, NJ in press
  20. Stofko-Hahn, R. E., Carr, D. W., and Scott, J. D. (1992) FEBS Lett. 302, 274-278 [CrossRef][Medline] [Order article via Infotrieve]
  21. Klauck, T. M., Faux, M. C., Labudda, K., Langeberg, L. K., Jaken, S., and Scott, J. D. (1996) Science 271, 1589-1592 [Abstract]
  22. Coghlan, V., Perrino, B. A., Howard, M., Langeberg, L. K., Hicks, J. B., Gallatin, W. M., and Scott, J. D. (1995) Science 267, 108-111 [Abstract/Free Full Text]
  23. Rannels, S. R., Cobb, C. E., Landiss, L. R., and Corbin, J. D. (1985) J. Biol. Chem. 260, 3423-3430 [Abstract/Free Full Text]
  24. Reimann, E. M. (1986) Biochemistry 25, 119-125 [CrossRef][Medline] [Order article via Infotrieve]
  25. Ringheim, G. E., and Taylor, S. S. (1990) J. Biol. Chem. 265, 4800-4808 [Abstract/Free Full Text]
  26. Su, Y., Dostmann, W. R. G., Herberg, F. W., Durick, K., Xuong, N.-h., Ten Eyck, L., Taylor, S. S., and Varughese, K. I. (1995) Science 269, 807-813 [Abstract/Free Full Text]
  27. Carr, D. W., Stofko-Hahn, R. E., Fraser, I. D. C., Bishop, S. M., Acott, T. S., Brennan, R. G., and Scott, J. D. (1991) J. Biol. Chem. 266, 14188-14192 [Abstract/Free Full Text]
  28. Carr, D. W., Hausken, Z. E., Fraser, I. D. C., Stofko-Hahn, R. E., and Scott, J. D. (1992) J. Biol. Chem. 267, 13376-13382 [Abstract/Free Full Text]
  29. Carr, D. W., and Scott, J. D. (1992) Trends Biochem. Sci. 17, 246-249 [CrossRef][Medline] [Order article via Infotrieve]
  30. Fletcher, W. H., Van Patten, S. M., Cheng, H.-C., and Walsh, D. A. (1986) J. Biol. Chem. 261, 5504-5513 [Abstract/Free Full Text]
  31. Coghlan, V. M., Langeberg, L. K., Fernandez, A., Lamb, N. J. C., and Scott, J. D. (1994) J. Biol. Chem. 269, 7658-7665 [Abstract/Free Full Text]
  32. Glantz, S. B., Li, Y., and Rubin, C. S. (1993) J. Biol. Chem. 268, 12796-12804 [Abstract/Free Full Text]
  33. Landschulz, W. H., Johnson, P. F., and McKnight, S. L. (1988) Science 240, 1759-1764 [Abstract/Free Full Text]
  34. Goodman, R. H. (1990) Ann. Rev. Neurosci. 13, 111-127 [CrossRef][Medline] [Order article via Infotrieve]
  35. Rosenmund, C., Carr, D. W., Bergeson, S. E., Nilaver, G., Scott, J. D., and Westbrook, G. L. (1994) Nature 368, 853-856 [CrossRef][Medline] [Order article via Infotrieve]
  36. Johnson, B. D., Scheuer, T., and Caterall, W. A. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, 11492-11496 [Abstract/Free Full Text]
  37. Huang, Y. Y., Kandel, E. R., Varshavsky, L., Brandon, E. P., Qi, M., Idzerda, R. L., McKnight, G. S., and Bourtchouladze, R. (1995) Cell 83, 1211-1222 [CrossRef][Medline] [Order article via Infotrieve]
  38. Brandon, E. P., Zhuo, M., Huang, Y. Y., Qi, M., Gerhold, K. A., Burton, K. A., Kandel, E. R., McKnight, G. S., and Idzerda, R. L. (1995) Proc. Natl. Acad. Sci. U. S. A. 92, 8851-8855 [Abstract/Free Full Text]
  39. Brandon, E. P., Gerhold, K. A., Qi, M., McKnight, G. S., and Idzerda, R. L. (1995) Recent Prog. Horm. Res. 50, 403-408
  40. Carr, D. W., DeManno, D. A., Atwood, A., Hunzicker-Dunn, M., and Scott, J. D. (1993) J. Biol. Chem. 268, 20729-20732
  41. Towbin, H., Staehelin, T., and Gordon, J. (1979) Proc. Natl. Acad. Sci. U. S. A. 76, 4350-4354 [Abstract/Free Full Text]

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