![]()
|
|
||||||||
(Received for publication, May 24, 1996, and in revised form, August 5, 1996)
From the The pH dependence of CO binding kinetics to
Chelidonichthys kumu hemoglobin (Hb) and human adult Hb has
been investigated between pH 2.0 and 9.0 at 20 °C. For both Hbs, CO
binding kinetics is characterized by two proton-linked transitions,
with different pKa values for In mammalian hemoglobins (Hb), the subunit structural
heterogeneity of Previous investigations have shown that in the kinetic pathway of CO
binding a crucial role is played by proximal HisF8, which
modulates the ligand reactivity through the energy barrier for the
movement of the ferrous iron to the heme plane (9, 10). Thus, even
keeping a T-like quaternary conformation, the cleavage (or the severe
weakening) of the proximal HisF8-Fe bond dramatically
changes the reactivity of deoxy human adult Hb for CO at low pH,
leading to an increase of the rate constant for ligand binding
consistent with an R-like kinetic behavior (10). However, no kinetic
functional heterogeneity has been detected for human adult Hb, as
indicated by the observation that alteration of the proximal
HisF8-Fe bond may be described as an apparent single
protonation process. Therefore, the proximal side of the heme pocket
appears to display energy parameters closely similar for the two types
of subunits in the T state of human adult Hb.
On the other hand, a marked functional heterogeneity has been observed
for CO binding to some fish Hbs (11, 12, 13), and it becomes especially
evident whenever experimental conditions tend to stabilize the T
quaternary state also in the liganded form. However, the structural
basis for such a markedly heterogeneous behavior has not been
established unequivocally (14, 15).
The functional properties of fish Hb from Chelidonichthys
kumu have been reported recently (16). At neutral pH values, this Hb displays a markedly heterogeneous kinetic CO binding behavior, which
parallels O2 equilibrium ligand binding properties typical of a Hb staying in the T quaternary state even in the liganded form
(16). In view of these features, and of the very stable tetrameric
assembly observed in C. kumu Hb, like other fish Hbs (16,
17), the pH and temperature dependence of the dynamic behavior for CO
binding to this fish Hb has been investigated and compared with the
same process in human adult Hb. In this respect, C. kumu Hb
offers a very interesting opportunity for studying the different
proton-linked modulation of ligand reactivity in the two types of
subunits within the tetramer. The main purpose of this approach is thus
the characterization of some energy parameters, which play major roles
in regulating the reactivity of this fish Hb, and, more in general, of
the role of different subunits in modulating the dynamic pathway of
ligand binding. This aspect has not been investigated for CO binding to
mammalian Hbs, and in particular for human adult Hb, since only a
fairly small (almost undetectable) kinetic functional heterogeneity has
been observed in Fe-Co hybrids in the presence of inositol
hexakisphosphate (18). The comparison of the behavior observed in
C. kumu Hb with respect to human adult Hb also allows one to
envisage some detailed aspect(s) of potential effects of the heme
environment on the regulation of the CO binding process, and thus on
the origin of the functional heterogeneity in C. kumu
Hb.
Human adult Hb and C. kumu Hb were prepared as
reported previously (16, 19), and stripped of cations and anions
according to Riggs (20).
Carbon monoxide was obtained by CaracciolOssigeno S.p.A. (Rome, Italy).
Chemicals were from Merck AG (Darmstadt, Germany) and
Sigma. All products were of analytical grade and used
without further purification.
Kinetics of CO binding was carried out as previously reported at 419 nm
and between 8 °C and 38 °C (9, 10), keeping deoxy Hb at pH 7.0 in
a very low ionic strength buffer (I = 2 mM)
and mixing with a higher ionic strength buffer (I = 0.3 M) at the desired pH and with varying concentrations of
dissolved CO.
CO binding kinetics was carried out in the absence and presence of 3 mM ATP (only for C. kumu Hb) between pH 2.0 and
9.0 (0.15 M phosphate buffer between pH 2.0 and 4.0 and
between pH 5.5 and pH 7.5; 0.15 M acetate buffer between pH
4.0 and pH 5.5; 0.15 M MES1
buffer between pH 5.0 and 7.0; 0.15 M HEPES buffer between
pH 6.5 and 8.0; 0.15 M Tris/HCl buffer between pH 7.5 and
9.0). No ion effects were observed for buffers overlapping in pH
values.
The transient spectrum of unliganded C. kumu Hb at pH 2.3 was obtained as described previously at 21 °C (9, 10), mixing deoxy
Hb in a low ionic strength buffer at pH 7.0 with a degassed 0.15 M (final concentration) phosphate buffer at pH 2.0 (final pH = 2.3), and determining the amplitude of the denaturation
process between 480 nm and 600 nm.
Kinetic experiments were performed at the Department of Biochemical
Sciences "Alessandro Rossi Fanelli" of the University of Roma "La
Sapienza," using a Gibson-Durrum stopped-flow apparatus with a 2-cm
pathlength observation cell, connected to a desktop computer for fast
data acquisition (On Line Systems, Jefferson, GA). The pH values of the
reaction mixture were checked at every temperature.
C. kumu Hb has been shown to bind O2
noncooperatively at neutral pH, cooperativity occurring at alkaline pH
values; in parallel, kinetic heterogeneity for CO association and
O2 dissociation fades out going from pH 6 to pH 9. Such
behavior suggests that the lack of cooperativity may be at least
partially attributed to the marked functional heterogeneity present in
the T state, possibly accompanied by a stabilization of this low
affinity quaternary conformation even in the liganded form. This
feature likely contributes to impair the appearance of a cooperative
ligand binding in C. kumu Hb. Furthermore, the physiological
allosteric effector ATP has been shown to significantly decrease the
ligand affinity of C. kumu Hb, impairing the appearance of
cooperativity even at alkaline pH values. Such a finding indicates that
ATP may play a significant role in modulating the ligand affinity, the
quaternary conformational equilibrium, and possibly the functional
heterogeneity of C. kumu Hb (16).
Fig. 1 shows the pH dependence of CO binding bimolecular
rate constants to human adult Hb (panel A) and to C. kumu Hb in the absence (panel B) and presence
(panel C) of 3 mM ATP. The kinetic functional
heterogeneity of C. kumu Hb is present essentially over the
whole pH range, but it tends to disappear at pH 2.0 and 9.0. The pH
dependence of the CO binding kinetic properties of adult human Hb
refers to the overall rate constant, since no detectable kinetic
heterogeneity is observed (10). Both adult human Hb and C. kumu Hb display a pH-dependent CO binding behavior,
which requires two apparent protonation events, such that lowering pH from 9.0 to 6.0 brings about a decrease of the second-order rate constant followed by an enhancement of the kinetics upon further lowering of pH from 6.0 to 2.0 (Fig. 1). In all cases, the reverse bell-shaped pattern displays a well at pH values around 6, suggesting that the apparent singly protonated species is characterized by the
slowest CO binding rate constant. Parameters reported in Table I have been obtained from the fitting of data according
to the following equation.
Values of parameters used for the description of the pH dependence of
the CO binding to C. kumu Hb (fast and slow chains) and to human
adult Hb, at 21 °C
Parameters reported in Table I suggest that the marked functional
heterogeneity in C. kumu Hb can be related to a functional kinetic difference between On the basis of Equation 1 and of parameters reported in Table I we can
state that at the alkaline pH limit l
Activation parameters for CO binding to C. kumu Hb at 20 °C,
normalized for 1 M ligand concentration
Volume 271, Number 47,
Issue of November 22, 1996
pp. 29859-29864
©1996 by The American Society for Biochemistry and Molecular Biology, Inc.
§,
and
Department of Molecular,
Consiglio Nazionale delle
Ricerche,
- and
-chains
in C. kumu Hb, leading to a relevant functional kinetic
heterogeneity at most pH values. On the other hand, in human adult Hb
the CO binding does not display a functional heterogeneity. Lowering
the pH from 9 to 6 brings about a decrease of the CO binding rate
constants, to a different extent for human adult Hb and the two chains
of C. kumu Hb. Further lowering the pH from 6 to 2 induces
an enhancement of CO binding rate constants, probably related to the
protonation of proximal HisF8 N
atom and the
cleavage (or severe weakening) of the HisF8-Fe bond. The
presence of physiological concentrations of ATP (
3 mM)
affects the pH dependence of CO binding kinetics to C. kumu. Moreover, the effect of temperature (between 8 °C and
38 °C) on CO binding kinetics has been investigated in the absence
of ATP at different pH values. These results allow to interpret the functional kinetic heterogeneity of C. kumu Hb on the basis
of different regulatory aspects in the
- and
-subunits, as
suggested by structural considerations.
- and
-chains usually does not bring about any
relevant functional heterogeneity, this being especially true for CO
binding both in the T and R quaternary states (1, 2). A different behavior has been observed for O2 binding to human adult
Hb, which displays some kinetic heterogeneity (3, 4, 5, 6). This finding
clearly indicates that reactivity determinants indeed differ for
various ligands and possibly for different quaternary conformations (7,
8).
l
(Eq. 1)
obs is the observed second-order rate
constant for CO binding; l
0,
l
1, and l
2 are the
bimolecular rate constant for CO binding to the unprotonated, singly
protonated, and doubly protonated molecule, respectively;
K1 and K2 are the
apparent proton equilibrium association constants to the unliganded Hb for the first (i.e. on the alkaline side) and the second
apparent protonation event (i.e. on the acidic limb),
respectively. P is the binding polynomial for the two
protons to the unliganded Hb (i.e. P = 1 + K1[H+] + K1K2[H+]2).
Equation 1 implies that protonation events are much faster than the CO
binding rate constants, and this assumption is supported by the
observation of a single exponential in human adult Hb. This equation
underlies the existence of only two apparent protonating groups, which
are functionally affecting the dynamic CO binding behavior of human
adult Hb as well as of C. kumu Hb. Even though some authors
have shown that a fairly large number of residues may be potentially
involved in proton-linked functional effects (21, 22, 23), only relatively
few amino acids have been demonstrated to play a major role in
modulating ligand binding properties (8). In this case, the excellent
fitting given in Fig. 1 clearly indicates that there is no need to
imply more than two classes of protonating residues affecting CO
binding kinetics of human adult Hb and of C. kumu Hb, even
though each class indeed may be formed by several residues displaying
closely similar pKa values. Therefore, in what
follows singly protonated means that only the first class of groups has
been protonated, whereas doubly protonated indicates that also the
second lower pKa class has been protonated.
Fig. 1.
pH dependence of the bimolecular rate
constant (l
obs; M
1
s
1) for CO binding to ferrous human adult Hb (panel
A) and C. kumu Hb (panels B and
C). Values of l
obs were
obtained in the absence (panels A and B) and
presence of 3 mM ATP (panel C).
Triangles and squares (panels B and
C) refer to the fast and slow process, respectively, for CO
binding to C. kumu Hb. Continuous lines are the
best fitting employing Equation 1 with parameters given in Table I. The
concentration of both Hbs was 2 µM heme. For further details, see text.
[View Larger Version of this Image (19K GIF file)]
C. kumu Hb
Human
adult Hb
Fast chain
Slow chain
Without ATP
l
0 (M
1
s
1)8.8 (± 0.2) × 105
8.8 (± 0.2) × 105
3.2 (± 0.1) × 105
l
1 (M
1
s
1)3.4 (± 0.3) × 104
5.4 (± 0.4) × 103
2.8 (± 0.2) × 104
l
2
(M
1 s
1)2.1 (± 0.1) × 106
2.1 (± 0.2) × 106
3.0 (± 0.3) × 107
pK1
7.6 ± 0.2
8.2 ± 0.1
6.9 ± 0.1
pK2
4.6 ± 0.2
2.9 ± 0.2
3.2 ± 0.2
+ 3 mM ATP
l
0 (M
1
s
1)3.3 (± 0.2) × 105
3.3 (± 0.2) × 105
l
1 (M
1
s
1)1.3 (± 0.3) × 105
6.1 (± 0.3) × 103
l
2 (M
1
s
1)2.5 (± 0.2) × 106
2.5 (± 0.2) × 106
pK1
7.6 ± 0.3
8.6 ± 0.1
pK2
4.4 ± 0.2
3.3 ± 0.2
- and
-subunits only in the singly protonated tetramer (i.e. at pH
6). Thus, the
latter is the most interesting form, being characterized in the
slow-reacting subunit by second-order rate constants, which are
unusually slow for CO binding (see l
1 in Table
I). On the other hand, at alkaline pH C. kumu Hb displays a
second-order rate constant for the two subunits which is significantly
faster than that observed in human adult Hb (see Fig. 1 and Table I).
Therefore, in C. kumu Hb lowering pH from 9 to 6 brings
about a dramatic decrease of the CO binding rate constant (at least in
the absence of ATP), much larger than in adult human Hb, this being
especially relevant for one type of subunit (see Fig. 1, panels
A and B). An additional peculiar aspect of the first
protonation event (on the alkaline side) is the fact that the
pKa of the transition is fairly high in both chains
(pKa = 7.6 and 8.2 for the fast and slow subunit,
respectively; see Table I) with respect to human adult Hb
(pKa = 6.9; see Table I). Moreover, the
pKa value differs between the two subunits by
0.6
and
1.0 pH unit in the absence and presence of 3 mM ATP,
respectively (see Fig. 1 and Table I).
obs
l
0, since under these conditions the binding
polynomial turns out to be P
1 (
(K1[H+] + K1K2[H+]2)),
whereas at the acid pH limit l
obs
l
2 because the binding polynomial is
P
K1K2[H+]2
(
(1 + K1[H+])). At
intermediate pH values, that is at the bottom of the well for the pH
dependence (see Fig. 1), we have the predominance (i.e. > 90%) of singly protonated species, so that the binding polynomial is
P
K1[H+]
(
(1 + K1K2[H+]2)),
and l
obs approximates
l
1. Therefore, the activation energy parameters
indeed can be reasonably ascribed to the unprotonated (at pH 8.9 ± 0.2), to the apparent singly protonated (at pH 6.0 ± 0.2), and
to the apparent doubly protonated form (at pH 2.5 ± 0.1) (see
Fig. 1). The good linearity of the Arrhenius plot at the selected pH
values (Fig. 2) confirms the hypothesis that at each of
these pH values we are indeed observing the activation energy of only
one of the three species mentioned above. This evidence allows us to
calculate the transition state parameters (24) of the unprotonated,
singly protonated and doubly protonated forms for the CO binding
kinetics to human adult Hb and to both subunits of C. kumu
Hb at 20 °C, using the molar concentration of the ligand as a
reference (see Table II).
Fig. 2.
Temperature dependence of the
pseudo-first-order CO binding rate constant (k
;
s
1) in the absence of ATP at pH 8.9 (panel
A), pH 6.0 (panel B), and pH 2.5 (panel
C). Circles refer to human adult Hb, and diamonds to C. kumu Hb, where only one phase is
observed. Triangles and squares refer to the fast
and the slow phase, respectively, of C. kumu Hb. Data for
human adult Hb in panel B refer to the scaling on the
right of the panel. The CO concentration after mixing was 25 µM in panel A, 50 µM in
panel B, and 5 µM in panel C. Hb
concentration was always 2 µM heme. Solid
lines correspond to the fitting according to the following
equation, where k
is the pseudo first-order rate constant;
Ea values are reported in Table II.
Values of lnA are 14.0 for human adult Hb and 15.0 for C. kumu Hb at pH 8.9 (panel A); 11.9 for
human adult Hb and 14.5 and 34.2 for the fast and slow phase of
C. kumu Hb, respectively, at pH 6.0 (panel B);
15.0 for human adult Hb and 16.1 for C. kumu Hb at pH 2.5 (panel C). For further details, see text.
(Eq. 2)
[View Larger Version of this Image (18K GIF file)]
C. kumu
Hb
Activation parameters at:
pH 8.9
pH 6 (fast)
pH 6 (slow)
pH 2.5
kJ/mol
Ea
28.9
(± 1.3)
31.0 (± 1.1)
86.2 (± 2.8)
33.3 (± 1.2)
G
39.2 (± 1.2)
44.3
(± 1.2)
50.0 (± 1.4)
37.2 (± 1.0)
H
26.4 (± 1.2)
28.5
(± 1.0)
83.8 (± 2.5)
30.9 (± 1.1)
T
S
12.8 (± 1.2)
15.8
(± 1.8)+33.8 (± 3.2)
6.3 (± 0.3)
Human adult
Hb
Activation parameters at:
pH 8.9
pH 6.0
pH
2.5
kJ/mol
Ea
28.7
(± 1.2)
24.8 (± 1.1)
26.6 (± 1.4)
G
41.5 (± 1.3)
44.3
(± 1.2)
33.0 (± 1.0)
H
26.3
(± 1.2)
22.4 (± 1.1)
24.2 (± 1.4)
T
S
15.2 (± 1.3)
21.9
(± 1.5)
8.8 (± 0.4)
A first look at the parameters reported in Table II reveals that
lowering pH from 9.0 to 6.0 has a completely different effect for the
two chains of C. kumu Hb (see Table II). The very marked kinetic heterogeneity significantly decreases as temperature rises (see
Fig. 2, panel B), whereas it is enhanced as the temperature is decreased. Therefore, the reaction of the two subunits with CO in
the apparent singly protonated species displays a large difference
between the two chains in the activation energy
Ea, and thus for the activation enthalpy
H
(= Ea
RT). This results in a totally different reaction mechanism for the two types of subunits, which is enthalpy-driven for the fast-reacting chain, whereas it is entropy-driven for the slow-reacting subunit (see Table II). The occurrence of a positive entropy change for
the formation of the transition state suggests that the very slow
binding rate constant of the slow-reacting subunit in the singly
protonated form is likely to be related to some proton-linked bond(s),
which strongly impair(s)
the conformational change of the heme pocket required for the formation of the HbCO adduct.
The behavior observed for human adult Hb is more similar to that of the fast-reacting chain of C. kumu. Thus, at alkaline pH human adult Hb and C. kumu Hb display closely similar values for the activation enthalpy, the lower second-order rate constant of human adult Hb being referrable only to a more negative activation entropy (see Table II). Lowering the pH from 9 to 6 is characterized by a slight decrease for the activation enthalpy, the activation entropy becoming significantly more negative in the case of human adult Hb (see Table II). The different trend of energetic parameters in the two Hbs, associated to the difference in the pKa of the process (see Table I), indeed seems to suggest that, in spite of the similar CO binding rate constant at pH 6.0, a somewhat different mechanism is underlying the alkaline transition in human adult Hb and in the fast-reacting chain of C. kumu Hb.
A structural interpretation of this behavior is not straightforward,
since there are a large number of substitutions in the heme pocket of
C. kumu Hb with respect to human adult Hb, and some of them
might have closely similar pKa values, thus belonging to the same class of protonating residues and contributing to
the same proton-linked transition. Therefore, in what follows we
attempt to discuss their role, also taking into account the effects
produced by each substitution in human mutants. In the case of human
adult Hb, the alkaline transition observed for CO binding displays a
pKa value, which is consistent with the protonation
of a histidyl residue, and it can be tentatively attributed to the
distal His. On the other hand, the fairly high pKa
values for the alkaline transition of the two subunits of C. kumu (see Fig. 1 and Table I) do not find an obvious explanation, and a more careful analysis of the alterations in the heme pocket of
the two subunits is required. In this respect, C. kumu Hb
displays some potentially important substitutions with respect to human adult Hb, namely (i) on the distal portion of the heme pocket residue
E11 of both chains is Ile instead of Val; (ii) LysE3 and
LysE10 of the
-subunit, close to distal
HisE7, are replaced by Glu and Thr, respectively; (iii) Lys
replaces Ser in CD3
; (iv) Lys is present in F7
(i.e.
immediately next to proximal HisF8), a position occupied by
Leu in human adult Hb; and (v) Lys is observed in F6
, where Glu is
present in human adult Hb (16, 19).
Even though the substitution of ValE11 by Ile has been
found to be relevant for the reactivity of CO toward the R state of
-mutants of human adult Hb (25), a major contribution from this
residue to the alkaline protonation process reported in Fig. 1 appears unlikely. It seems more convincing to identify a potentially
responsible factor for the effect, at least in the
-subunits of
C. kumu Hb, in the large electrostatic variation related to
the substitution of Lys by Glu in E3
and of Lys by Thr in E10
in
the distal portion of the heme pocket. This is likely to bring about a
large raising in the proton affinity of distal HisE7, which
could attain a value of pKa
7, as observed in
the fast-reacting subunit of C. kumu Hb. It should be
noticed that the apparent pKa of
GluE3
is likely to be further decreased by closely
positioned LysCD3
.
On the other hand, the occurrence of LysF7
in the
proximal portion of the heme pocket is unique in C. kumu Hb,
and a positively charged residue (i.e. ArgF7
)
has been previously observed in this position only in the low affinity
human adult mutant Hb Moabit (26). The role played by the residue in F7
on the regulation of functional properties has been clearly
demonstrated in the case of mutants of pig myoglobin, where in the
native molecule SerF7 forms an H-bond with N
of proximal His (27). In C. kumu Hb the occurrence of a
positively charged lysyl residue at F7
in place of Leu (present in
human adult Hb) might be responsible for a relevant alteration of the
conformation of the proximal portion of the heme pocket, dramatically
reducing the reactivity toward CO. Therefore, the protonation of
LysF7
might be responsible for the dramatic reduction of
CO binding second-order rate constant of
-chains in C. kumu Hb, possibly attributing the pKa > 8.0 observed in the slow-reacting subunit of C. kumu Hb to this
process and to the
-chain (see Fig. 1 and Table I). Although the
observed pKa value (= 8.2, see Table I) is
2 pH
unit lower than that of free lysine, such a decrease indeed can be
related to the burying of LysF7
inside the proximal
portion of the heme pocket, and to the consequent separation from the
bulk solvent. The two additional substitutions with respect to human
adult Hb, which are observed in the distal portions of the heme pocket
in
-chains of C. kumu (where AsnE10
replaces Lys at a heme contact position and SerE3
replaces Gln next to distal His), should not bring about electrostatic alterations. Furthermore, in the
-subunits of C. kumu Hb
the presence of LysF6
, which substitutes Glu (present in
human adult Hb) near proximal HisF8, could be partially
responsible for the reduced O2 affinity and CO binding
second-order rate constant, since a similar effect is observed in the
human adult mutant Hb Agenogi, where GluF6
is
substituted by Lys (28).
Below pH 6, an acidic protonation process can be observed, which brings
about a marked enhancement of the CO binding rate constant to both
C. kumu Hb and human adult Hb (see Fig. 1). This second
protonation is reminiscent of that described previously in human adult
Hb (10), as well as in other monomeric and dimeric hemoproteins (9, 29,
30), and it may be referred to the protonation of the N
atom of the HisF8 imidazole ring, and the consequent
cleavage (or severe weakening) of the proximal HisF8-Fe
bond. This interpretation seems supported by the observation that the
transient absorption spectrum of unliganded C. kumu Hb in
the visible region displays features characteristic of a
tetracoordinated heme (see Fig. 3, and Ref. 9). In
C. kumu Hb the pKa value is drastically
different for the two subunits both in the absence and presence of 3 mM ATP (see Fig. 1, and Table I). Such a behavior clearly
indicates that in the singly protonated species the conformation of the
proximal side of the heme pocket is markedly different in the two
chains, this being reflected in a much lower energy for the cleavage of
the proximal HisF8-Fe bond in the fast-reacting chain than
in the slow-reacting subunit (by
10 and 6 kJ/mol in the absence and
presence of ATP, respectively).
)
represent the initial optical density changes at every wavelength after rapid mixing of ferrous deoxygenated C. kumu Hb with
degassed 0.3 M phosphate buffer (pH = 2.0) to bring
the pH to 2.3. The concentration of C. kumu Hb was 8 µM heme after mixing. The absorption spectrum in the
visible region of C. kumu Hb at pH 9.0 was superimposable to
that at pH 7.0. For further details, see text.
The cleavage (or severe weakening) of the proximal HisF8-Fe
bond essentially abolishes the kinetic functional heterogeneity (see
Fig. 1), which (together with the pKa difference for
the protonation process) suggests that the structural basis of the
chain kinetic difference mostly resides in the conformation of the
proximal side of the heme pocket in the singly protonated species.
However, it must be remarked that the asymptotic value of C. kumu Hb (l
2 = 2.1 × 106
M
1 s
1) is much lower than that
of human adult Hb (l
2 = 3.0 × 107 M
1 s
1). Such a difference
indicates that, even in the absence (or severe weakening) of the
proximal HisF8-Fe bond, the ligand kinetic pathway for the
interaction with the heme iron displays a larger activation free energy
in C. kumu Hb than in human adult Hb (see Table II). In the
absence of a proximal control, this effect can only be attributed to
differences in the distal portion of the heme pocket between human
adult Hb (showing ValE11 in both subunits) and C. kumu Hb, where both chains display IleE11 (16), which
is known to represent a larger barrier for ligand binding (25).
The temperature dependence of the CO binding kinetics has been investigated also at pH 2.5 (see Fig. 2, panel C, a condition in which no heterogeneous kinetic behavior is observed in C. kumu Hb (see Fig. 1). The analysis of the activation parameters for the single dynamic process observed at this pH clearly shows that the cleavage (or severe weakening) of the proximal HisF8-Fe bond in human adult Hb and in the fast-reacting chain of C. kumu Hb brings about an increase of the CO binding rate constant, which is merely due to a decrease of the negative activation entropy (see Table II). This indicates that the modulation of the heme iron reactivity (and thus of the movement in the heme plane upon ligand binding) by the proximal bond is regulated through the activation entropy of the process without significantly influencing the activation enthalpy (see Table II).
In the slow-reacting subunit of C. kumu Hb, the rate
enhancement at acidic pH values is regulated by two opposite effects, taking place upon cleavage of the proximal bond, namely (i) a drastic
reduction of the activation enthalpy, and (ii) a negativization of the
activation entropy, which was positive for the singly protonated form
of this chain at pH 6.0 (see Table II). This different contribution must be certainly attributed to the peculiar features of the singly protonated form of the slow-reacting subunit of C. kumu Hb,
in which the cleavage (or severe weakening) of the proximal
HisF8-Fe bond brings about a conformational transition,
which is different from that observed for the same phenomenon in human
adult Hb and in the fast-reacting subunit of C. kumu Hb.
Therefore, it seems that in the singly protonated species the
slow-reacting subunits are held in a very unreactive conformation,
possibly involving mainly the proximal side of the heme pocket, such as
to decrease the mobility of the proximal HisF8-Fe bond for
ligand binding. The cleavage (or severe weakening) of the proximal
HisF8-Fe bond at low pH then releases such a strong
constraint in the slow-reacting subunit, which is the cause of the
marked functional kinetic heterogeneity at neutral pH, and the
reactivity toward CO recovers a value essentially undistinguishable
from that of the partner subunit. The unusually low
pKa value for this acid protonation process in the
slow-reacting subunit (pKa < 3.0), as compared with
that of human adult Hb (
3.4; see Fig. 1, panel A, and
Ref. 10), is in keeping with this interpretation, indicating a very
rigid proximal side in the singly protonated form at pH
6.0, or in any event an environment unfavorable to the stereochemical
changes of the proximal side that take place upon ligand binding (7,
31).
Furthermore, a comparison in C. kumu Hb between the
unprotonated tetramer at pH 8.9 and the doubly protonated species at pH 2.5 shows that the observed similarity for the values of CO binding bimolecular rate constants (see Tables I and II) is only fortuitous, since it stems from meaningfully different contributions of the activation enthalpy and entropy. Thus, in the unprotonated molecule the
positive value of
H
is lower than in the
doubly protonated tetramer, whereas the negative contribution of the
activation entropy is smaller in the doubly protonated tetramer. Such
an observation seems in line with the possibility that the cleavage (or
severe weakening) of the proximal HisF8-Fe bond regulates
the CO binding kinetics mostly reducing the entropy loss required for
the formation of the activated complex, this being true also for human
adult Hb (see Table II).
In conclusion, the reported behavior suggests that the dramatic
functional kinetic heterogeneity in CO binding to C. kumu Hb
is likely to be referrable to structural variations of the heme pocket
with respect to human adult Hb, mostly located in the distal portion of
the
-chains and on the proximal side of the
-subunits. Therefore,
in the two chains of C. kumu Hb CO binding reactivity is
regulated through a different mechanism, which becomes evident only in
the singly protonated species, since different protonating groups are
altering to a different extent the energetic parameters along the first
protonation process on the alkaline side.
Furthermore, this investigation also brings to evidence that the
cleavage (or severe weakening) of the proximal HisF8-Fe
bond, which is induced by the second protonation event, brings about a
relevant enhancement of the binding second-order rate constant mostly
through a reduction of the entropy increase required for the formation
of the transition state. This observation clearly indicates that the
degrees of freedom for the movement of the unliganded iron in the heme
plane (and thus the entropy changes accompanying this stereochemical
variation) are an important factor along the reaction pathway of CO
binding. In addition, the effect of ATP can be detected only for the
pKa of the transitions in the slow-reacting chains,
suggesting that this heterotropic ligand contributes to an alteration
of the conformation mostly on these subunits, with a marked weakening
(by
4 kJ/mol) of the proximal bond.
This article has been cited by other articles:
![]() |
H. Decker and H. Nadja Negative cooperativity in Root-effect hemoglobins: role of heterogeneity Integr. Comp. Biol., October 1, 2007; 47(4): 656 - 661. [Abstract] [Full Text] [PDF] |
||||
![]() |
C. Verde, V. Carratore, A. Riccio, M. Tamburrini, E. Parisi, and G. di Prisco The Functionally Distinct Hemoglobins of the Arctic Spotted Wolffish Anarhichas minor J. Biol. Chem., September 20, 2002; 277(39): 36312 - 36320. [Abstract] [Full Text] [PDF] |
||||
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| HOME | HELP | FEEDBACK | SUBSCRIPTIONS | ARCHIVE | SEARCH | TABLE OF CONTENTS |
| All ASBMB Journals | Molecular and Cellular Proteomics |
| Journal of Lipid Research | ASBMB Today |