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(Received for publication, July 22, 1996)
From Molecular Glycobiology, Frontier Research Program, The
Institute of Physical and Chemical Research (RIKEN), Wako,
Saitama 351-01, Japan
The mouse ST8Sia II (mST8Sia II/STX) gene
encodes a neural cell adhesion molecule-specific polysialic acid
synthase whose expression is regulated during the developmental stages
of mouse brain. To elucidate the molecular mechanism by which the
expression is tissue-specifically and developmentally regulated, we
isolated the complete genomic DNA and characterized the promoter of the gene for mST8Sia II. The gene encoding mST8Sia II was found to span
about 80 kilobases and to be composed of six exons. Primer extension
and S1 nuclease protection analyses revealed that the transcription
started from 167 nucleotides upstream of the translational initiation
site. Promoter analyses of the 5 Polysialic acid (PSA)1 is a linear
homopolymer of Recently, two cDNAs encoding We showed recently that expression of the mST8Sia II gene increased in
parallel with the increased activity of PSA synthase and the quantity
of PSA N-CAM during neuronal differentiation of mouse teratocarcinoma
P19 cells, which provides us with an in vitro model system
for studying its promoter activity in the neural differentiation
processes (21). In this paper, we describe the genomic structure and
promoter sequence of the mST8Sia II gene and determination of the
5 A mouse genomic cosmid library was constructed and
screened as described previously (22). The locations of the exons of the mST8Sia II gene were determined by PCR (GeneAmp XL PCR kit; Perkin-Elmer) with specific oligonucleotide primers or by hybridizing radiolabeled sialyltransferase cDNA to the same blots.
The 3 mRNAs
from newborn mouse brain were extracted by the guanidinium
isothiocyanate method and purified with Oligotex-dT30 (Takara-Shuzo, Japan). Amplification of the 5 The reverse primer O1-EX3, which is
complementary to a portion of the first exon of the mST8Sia II gene,
was end labeled with [ pO1-22E4.8 was constructed by subcloning a
4.8-kb EcoRI fragment from COS O1-22 into the pUC119
plasmid. This fragment contains the 1.7-kb 5 The S1 probe was hybridized with 5 µg of mouse brain poly(A) RNA or 5 µg of yeast tRNA in 10 µl of hybridization buffer (40 mM PIPES, pH 6.4, 1 mM EDTA, 0.4 M
NaCl, and 50% formamide) overnight at 50 °C, after denaturation of
the mixture for 10 min at 80 °C. Then 200 µl of S1 mapping buffer
(280 mM NaCl, 50 mM sodium acetate, pH 5, 4.5 mM ZnSO4, 10 mg/ml salmon sperm DNA, and 1000 units/ml S1 nuclease) was added to each sample, and the mixtures were
incubated for 1 h at 37 °C. Digestion was stopped by the
addition of 1 µl of 0.5 M EDTA, and the nucleic acids
were recovered by ethanol precipitation. The protected products were
separated on a 6% sequencing gel along with a dideoxy chain
termination sequencing reaction of pO1-22E4.8, using O1-EX3 as the
primer.
Recombinant Sp1 was purchased
from Promega. Plasmid pO1-FT was constructed by subcloning the PCR
product using pO1-22E4.8, as the template, the O1-FTA primer
(5 To obtain various lengths of the
5
NIH 3T3 and undifferentiated
P19 cells were seeded at 5 × 104 cells/60-mm-diameter
dish in Dulbecco's modified Eagle's medium supplemented with 10%
fetal calf serum 24 h prior to transfection, respectively. For the
differentiation of P19 cells into neuronal cells, the cells were seeded
into and aggregated in bacteriological grade dishes in the presence of
1 µM retinoic acid at the cell density of 1 × 105/ml. After 3 days, the aggregates were trypsinized, and
approximately 1 × 105 cells/60-mm diameter dish
(tissue culture-grade dishes) were plated in Dulbecco's modified
Eagle's medium, 10% fetal calf serum 24 h prior to
transfection.
The luciferase plasmid (5 µg) used as the reporter and the pSR Screening of an
NIH 3T3 cell cosmid library for mST8Sia II cDNA resulted in the
isolation of four independent clones. A restriction map of the
approximately 100-kb region containing the mST8Sia II gene is shown in
Fig. 1.
We sequenced the exons, to determine their exact sizes, as well as the
sequences of the intron/exon junctions (Table I). The
sequences of all the intron-exon splice junctions conformed to the
GT-AG rule (25). Introns were present only in the protein coding region
of mST8Sia II. All of the splicing junctions of the mST8Sia II gene
occurred after the second nucleotide of the amino acid codon. The
mST8Sia II cDNA was divided into six exons, ranging from 63 to
4,340 bp, with intron sizes of about 4-39 kb and spanning
approximately 80 kb of genomic DNA (Fig. 1). Exon 1 contained the
entire 5
Exon/intron junctions of the mST8Sia II gene
Volume 271, Number 47,
Issue of November 22, 1996
pp. 30167-30173
©1996 by The American Society for Biochemistry and Molecular Biology, Inc.
BRAIN-SPECIFIC EXPRESSION FROM A TATA-LESS GC-RICH SEQUENCE*

ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
FOOTNOTES
Acknowledgments
REFERENCES
-flanking region of the mST8Sia II
gene using a luciferase gene reporter system revealed strong promoter
activity in retinoic acid-induced differentiated P19 cells, which
highly express the mST8Sia II gene. Deletion analyses demonstrated
that the minimal promoter activity detected for the proximal region 325 base pairs upstream from the translational initiation codon (
158 to
+167) could be modulated by various sequences within the 9.5-kilobase
5
-flanking region. The minimal promoter was embedded in a GC-rich
domain (74%, GC content), in which two Sp1 binding motifs as well as a
long purine-rich region were found, but it lacked TATA and CAAT boxes.
The positive regulatory region located between
159 and
659
contained two additional Sp1 binding motifs and a long pyrimidine-rich
region. We also found that the minimal promoter region of the
mST8Sia II gene was sufficient for expression of a reporter gene in
mST8Sia II gene-expressing neural differentiated P19 cells but not in
nonexpressing ones. Thus the TATA-less GC-rich minimal promoter region
of mST8Sia II probably controls the cell type-specific expression of
the mST8Sia II gene.
2,8-sialic acid residues mainly associated with the
neural cell adhesion molecule (N-CAM) in mammalian cells, and is
implicated in the reduction of N-CAM adhesion through its large
negative charge (1). The expression of PSA on N-CAM is developmentally
regulated in the central and peripheral nervous systems (2, 3, 4, 5),
i.e. PSA on N-CAM is more abundant in the fetal than in the
adult stage. Recent data imply important functions of PSA in the
pathfinding and targeting on innervation of axons, migration of
neuronal cells and tumor cells, and spatial learning and memory (6, 7, 8).
PSA on N-CAM was shown to be synthesized through the action of specific
sialyltransferase(s) (9, 10), but the mechanisms underlying the
regulation of PSA synthesis and PSA expression remain poorly
understood.
2,8-sialyltransferases named
ST8Sia II/STX (11, 12, 13) and ST8Sia IV/PST-1 (14, 15, 16) were cloned.
Mouse ST8Sia II (mST8Sia II) exhibits overall amino acid sequence
identity of 56% with mouse ST8Sia IV (mST8Sia IV). Both
sialyltransferases can synthesize PSA on
2,3-linked sialic acids on
N-CAM without any initiators (16, 17, 18, 19, 20). Northern blot analysis indicated
that expression of the mST8Sia II gene was restricted to the brain and
testis, whereas the mST8Sia IV gene was expressed strongly in lung and
heart rather than brain (13, 16). The expression of the mST8Sia II
gene in the brain was strictly regulated during developmental stages (13), i.e. an mST8Sia II transcript could be detected in
brain on embryonic day 14, which peaked on embryonic day 20 and then decreased progressively to an almost undetectable level by 2 weeks after birth. The expression of the mST8Sia IV gene was also higher in
fetal than adult brain but was less regulated during brain development
compared with that of the mST8Sia II gene (16). To elucidate the
mechanisms underlying of their tissue- and development-specific expression, it is important to know the structures and activities of
their promoters.
-flanking region responsible for the cell type-specific promoter
activity by means of transfection experiments using differentiated P19
cells.
Isolation of Genomic and cDNA Clones Encoding
mST8Sia II
-untranslated region of the mST8Sia II cDNA was isolated
from a 3-day-old mouse brain cDNA library (23) by PCR using primers
O1-3A (5
-GGTATACCCCTAGAACTATATAGCCCTGC-3
; nucleotides +2999 to +3024)
and O1-3C (5
-CTCAGGGTCACCTCCAGAACCTGAC-3
; complementary to
nucleotides +3420 to +3396).
cDNA End (RACE)
end of mST8Sia II cDNA was
performed essentially according to the procedure of Frothman et
al. (24). cDNA was synthesized by reverse transcription
(Superscript II; Life Technologies, Inc.) of 5 µg of mouse brain
poly(A) RNA using a primer O1-N6, 5
-TTAGATTTGCTATGTAAGCTGTT-3
, which
is complementary to nucleotides +327 to +303 of the mST8Sia II gene.
The excess primers and deoxynucleotides were removed by passage of the
cDNA through a MicroSpin S-400 column (Pharmacia Biotech Inc.). The cDNA was A-tailed with 0.6 unit of terminal
deoxynucleotidyltransferase (Boehringer Mannheim), using 0.05 mM dATP. Two consecutive PCRs were performed with two
nested sets of primers. For pair 1, the forward primer was
NotI-(dT)18 (Pharmacia), and the reverse primer was O1-N6. For pair 2, the forward primer was as above but without the
T-tail, 5
- AACTGGAAGAATTCGCGGCCGCAGGAA-3
, and the reverse primer was
O1-EX3 (5
-CTTCGATCGCTGAGATGTCTGCGAAGATGAGG-3
; complementary to
nucleotides +255 to +224 of the mST8Sia II gene). The cDNA was
amplified for 35 cycles of a step program (94 °C, 40 s;
55 °C, 40 s; 72 °C, 60 s). The amplification products
were subcloned into pUC119 and then sequenced.
-32P]ATP using T4 polynucleotide
kinase. The 32P-labeled O1-EX3 was hybridized with 5 µg
of poly(A) RNA prepared from mouse brain or 5 µg of yeast tRNA in a
10-µl hybridization solution (250 mM KCl, 10 mM Tris-HCl, pH 8.3, and 1 mM EDTA) for 1.5 h at 37 °C after denaturation of the mixture for 1 h
at 60 °C. Following hybridization, 60 µl of reverse transcriptase
buffer and 200 units of Superscript II (Life Technologies, Inc.) were added (final buffer concentrations: 75 mM KCl, 20 mM Tris-HCl, pH 8.3, 10 mM dithiothreitol, 10 mM MgCl2, and 0.25 mM dNTPs), followed by incubation for 1 h at 45 °C. The protected products were separated on a 6% sequencing gel along with a dideoxy chain termination sequencing reaction of pO1-22E4.8, using O1-EX3 as the
primer.
-flanking region, all of
the first exon, and part of the first intron of the mST8Sia II gene. A
32P-labeled S1 probe complementary to nucleotides
393 to
+255 was generated using a GeneAmp XL PCR kit, with pO1-22E4.8 as the
template and O1-EX3 as the primer. The extension products were digested with SmaI and denatured at 100 °C for 3 min, and then the
648-nucleotide 32P-labeled S1 probe was separated from the
template by electrophoresis on a 6% sequencing gel. The probe was
isolated by soaking gel pieces in the elution buffer (300 mM sodium acetate, pH 5.0, and 10 mM EDTA) at
room temperature for 8 h, followed by ethanol precipitation.
-AGCAAAGCTGTCAAACTGCGCCTGGAGCCCAG-3
; mST8Sia II coding strand,
nucleotides
124 to
93) and O1-FTB primer
(5
-TCCACGCGCACGAGGGACACACACCCTGCGCT-3
; complementary to the
mST8Sia II coding strand, nucleotides +94 to +63) into pBluescript
SK+. 32P-Labeled DNA fragments were prepared by PCR using
32P-labeled O1-FTA and cold O1-FTB, with pO1-FT as the
template. The binding reaction was carried out for 30 min at 25 °C
in 50 µl of a mixture comprising 25 mM HEPES-KOH, pH 7.9, 0.5 mM EDTA, 50 mM KCl, 10% glycerol, 1 mM phenylmethanesulfonyl fluoride, 1 mM
dithiothreitol, 0.3 µg of poly(dI-dC), 10 kcpm of
32P-labeled DNA fragment, and 1 footprinting unit of
recombinant Sp1. Five µl of freshly diluted DNase I (50 µg/ml) was
added to the mixture for 60 s at 25 °C, and then the reaction
was stopped by the addition of 100 µl of 1% sodium dodecyl sulfate
containing 20 mM EDTA and 200 mM NaCl. After
phenol-chloroform extraction and ethanol precipitation, the reacted
products were separated on a 6% sequencing gel along with a dideoxy
chain termination sequencing reaction of pFT-O1, using O1-FTA as the
primer.
-flanking region of the mST8Sia II gene, PCRs were performed with
Tth DNA polymerase (GeneAmp XL PCR kit) for 25 cycles in a DNA thermal
cycler (Perkin-Elmer). PCR was carried out using pO1-22E4.8 as the
template, and as primer, O1-ATGNco
(5
-GCAGCT
TGGGGTCGGTGCCTCCGG-3
; complementary to
the mST8Sia II coding strand, nucleotides +177 to +149 and including
an NcoI linker) and a reverse sequencing primer. The amplified fragment was digested with KpnI within the pUC119
vector polylinker, blunt ended, and then digested with NcoI
within the O1-ATGNco primer. For construction of pBO1-EN1.8, the
resultant DNA fragment was subcloned into
SmaI-NcoI-digested pPicaGene-Basic II (pPGBII;
Toyo-ink, Japan). pBO1-BN0.8 and pBO1-SN0.45 were generated by
subcloning the BamHI-NcoI- and
SmaI-NcoI-digested PCR products into pPGBII,
respectively. Series of deletion plasmids were constructed by
subcloning the restriction enzyme-digested PCR products. The primers
and template plasmids used were pBO1-XN0.15, carrying a 0.15-kb
XhoI-NcoI fragment amplified by using the primer set of O1-150X/O1-ATGNco; and pBO1-XN0.35, carrying a 0.35-kb XhoI-NcoI fragment amplified by using the primer
set of O1-350X/O1-ATGNco; the sequences of the primers were O1-150X,
5
-AGCGGG
CCGCGCCAGAGCAAC-3
(nucleotides
16 to +9,
including an XhoI linker) and O1-350X, 5
-TGGCCG
TTAGTGGGAGGA-3
(nucleotides
165 to
142,
including an XhoI linker). Plasmid pO1-22E4.8 was used as
the template. Plasmids pBO1-NhN3.5, pBO1-RN5.5, and pBO1-EN9.6 were
constructed as follows. An 8-kb EcoRI fragment from
COS O1-22 (from
9600 to
1646 in Fig. 5) was subcloned into the
EcoRI site of pBluescript SK+, and the resultant plasmid was
then double-digested with either set of restriction enzymes,
NheI-EcoRI (
3400 to
1645) or
EcoRV-EcoRI (
5400 to
1645), or only
EcoRI (
9600 to
1645). Each digested DNA fragment was
then subcloned into pBO1-EN1.8 to obtain plasmids pBO1-EN9.6,
pBO1-RN5.5, and pBO1-NhN3.5, respectively.
Fig. 5.
mST8Sia II gene promoter activity and
identification of the regulatory regions. Shown is a schematic
representation of DNA constructions containing various lengths of the
mST8Sia II promoter linked to the luciferase gene (pPGBII). Each DNA
fragment subcloned into the luciferase reporter plasmid is defined as
to its position in the mST8Sia II gene promoter relative to the
transcription start (+1). Five µg of each construct was transfected
into NIH 3T3 (3T3), undifferentiated P19 (P19),
or neural-differentiated P19 (P19(Dif)) cells. Luciferase
activity was normalized as to
-galactosidase activity of a
cotransfected internal control plasmid, pSR
-Gal. The data are
expressed as the fold increase in enzyme activity compared with
transfections using a promoterless luciferase plasmid, pPGBII. Results
are the average of five experiments.
[View Larger Version of this Image (21K GIF file)]
-Gal
plasmid (0.5 µg) used as an insertional control for transfection efficiency were transfected into the cells by means of Lipofectamine (Life Technologies, Inc.). After 48-h transfection, the cells were
washed three times with phosphate-buffered saline and then lysed with
cell lysis buffer (PG
-50; Toyo-ink). Luciferase activity was
measured using a PicaGene Luciferase assay system (Toyo-ink) and a
Luminescencer AB-2000 (ATTO, Japan). Light activity measurements were
performed in quadruplicate, averaged, and then normalized as to
-galactosidase activity to correct for the transfection efficiency.
-Galactosidase activity was measured using a Luminescent
-Galactosidase Detection Kit (Clontech).
Isolation of mST8Sia II Genomic Clones
Fig. 1.
Structure of the mST8Sia II gene.
Panel A, schematic representation of the mST8Sia II gene
locus with a restriction map. a, restriction map with
EcoRI depicted. The shaded bars denote the four
genomic clones (COS O1-22, COS O1-2, COS O1-1, and COS O1-14) isolated from a cosmid library. b, the six exons of the
mST8Sia II gene are shown as filled rectangles and the 5
-
and 3
-untranslated regions as open rectangles. The intronic
sequences are indicated by the solid lines between the
exons. Panel B, domain structure of mouse brain ST8Sia II.
The boxes indicate translated sequences, and
horizontal bars indicate untranslated sequences. A
hydrophobic signal anchor sequence (transmembrane domain) and sialyl
motifs L and S are denoted as TM, SM-L, and
SM-S, respectively. The splicing sites are indicated by
vertical arrows.
[View Larger Version of this Image (13K GIF file)]
-untranslated region and the beginning of the coding region to
amino acid residue 32. This exon contained a cytoplasmic domain, a
hydrophobic signal anchor sequence, and part of a stem domain. Exons
4-6 encoded the putative active domain of the enzyme, and exon 6 contained a large 3
-untranslated region. We reported previously
mST8Sia II cDNA sequences lacking the whole 3
-untranslated
region. Therefore, to determine the 3
end of the 5-kb mST8Sia II
transcript, the mouse brain cDNA library was screened by PCR using
primers distributed along the 3
part of the gene. Sequence analyses of
the PCR products revealed that the size of the transcribed RNA was
5,350 bp, thus it included a large 3
-untranslated region of 4055 bp.
Poly(A) addition had occurred 18 nucleotides downstream of the sequence
at the T residue of the polyadenylation signal (AATAAA).
end as described in Fig. 1. Exon and intron sizes are
indicated in base pairs. Numbering starts with position +1 at the
adenosine of the initiator methionine.
Exon
Splice donor
Intron
Splice acceptor
bp
kbp
32
34
1
265
GAA
GAA
ATC
GGgtaaatagccgccc

39
tttcctttgtcttgcagGAAT
TCT
Glu
Glu
Ile
Asn
Ser
53
55
2
63
AAA
TCT
AAT
AGgtttgtaaattaga

8
tttttacccccttccagAGCT
GAA
Lys
Ser
Asn
Ala
Glu
96
98
3
129
CTG
AGG
ATC
AGgtattggtcggtca

6
ttatttggttttcacagGAAG
CAA
Lys
Arg
Ile
Lys
Gln
182
184
4
258
TTT
GTC
ATA
AGgtaaccatccacca

4
tgctttttattcctcagGTGC
AAC
Phe
Val
Ile
Cys
Asn
280
282
5
294
GCA
GTC
CGA
GGgtgagtagctctca

16
ttttatttcttctccagATAT
TGG
Ala
Val
Arg
Tyr
Trp
The transcription
start site was determined by S1 nuclease mapping and primer extension
with RNA recovered from 1-day mouse brain, in which the mST8Sia II
gene was highly expressed (Fig. 2). A single stranded
32P-labeled S1 probe, corresponding to nucleotides
393 to
+205 of the mST8Sia II gene, was hybridized with poly(A) RNA, followed by S1 nuclease digestion. The protected fragments were analyzed on a
6% sequencing gel. Yeast tRNA was used as a control to protection specificity. The end points of the protected fragments were determined by comparison with a sequence ladder derived from the same genomic DNA
template (pO1-22E4.8) and the original primer, O1-EX3 (nucleotides +255
to +224, which is complementary to the mST8Sia II mRNA), used for
synthesizing the S1 probe. The end point was determined to be at
cytosine (+1), which corresponded to a position 167 nucleotides upstream from the initiation codon, ATG (Fig. 2A). Control
experiments involving tRNA showed no such band. Primer extension with
the same primer (O1-EX3) as used for S1 analysis resulted in extension products corresponding to the same cytosine (+1) (Fig. 2B).
Consistent with the results of primer extension and S1 nuclease
experiments, a predominant initiation site was found 167 nucleotides
upstream of ATG, which gave the only comigrating product in both S1
nuclease protection and primer extension experiments. Moreover, we
performed 5
RACE-PCR on newborn mouse brain poly(A) RNA to identify
the 5
end of the ST8Sia II gene, and the longest RACE-PCR products corresponded to the transcription initiation site determined in the S1
nuclease protection and primer extension experiments.
393 to +255 was generated as described
under "Experimental Procedures" and hybridized with 5 µg of
poly(A) RNA isolated from 1-day mouse brain or 5 µg of yeast tRNA
before the S1 nuclease reaction. For the primer extension reaction, a
32-mer oligonucleotide (O1-EX3) complementary to mST8Sia II mRNA
(nucleotides +255 to +224) was [
-32P]ATP end labeled,
hybridized with 5 µg of poly(A) RNA from 1-day mouse brain or 5 µg
of yeast tRNA, and then reverse transcribed. The S1 nuclease-protected
fragment as well as the primer-extended product were run on a
sequencing gel along with a sequencing reaction of pO1-22E4.8, using
O1-EX3 as the primer. In panel A, lane 1 is S1
nuclease reaction with 1-day mouse brain mRNA; lane 2,
with yeast tRNA. In panel B, lane 1 is primer
extension with 1-day mouse brain mRNA; lane 2, with
yeast tRNA. The arrow indicates the position of the
transcription start site.
Analysis of the 5
-flanking Region
Analysis of the sequence
2.5-kb upstream of the transcription initiation site revealed that the
mST8Sia II gene promoter has no typical TATA or CAAT boxes (Fig.
3). As shown in Fig. 3, the sequence of the putative
promoter region of the mST8Sia II gene was embedded in a GC-rich
domain. The GC content of the sequence between immediately upstream of
the transcription initiation site and the translational initiation site
(nucleotides
175 to +168) was 74%. A pyrimidine-rich region
(nucleotides
500 to
453) and a purine-rich region (nucleotides
83
to
11) were found in the 5
-flanking region. The TATA- and CAAT-less
mST8Sia II gene promoter contains three Sp1 binding sequences,
(G/T)GGGCGG(G/A)(G/A)(C/A), at positions
34 (matching 9-10),
80
(matching 9-10), and
170 (matching 6-10), and an inverted Sp1
binding site at position
573 (matching 8-10). To determine whether
or not the proximal Sp1 binding sites upstream of the transcriptional
initiation site are functional, we performed DNase I footprinting
analysis with Sp1. As shown in Fig. 4, the Sp1 binding
sites at positions
34 and
80 were both protected.
-flanking region
of the mST8Sia II gene. The transcription initiation site (+1) is
indicated by a vertical arrow. The sequence of the first
exon is shown in capital letters, and those of the
untranscribed regions are in lowercase letters. The coding
sequence of the first exon is shown as codon triplets. The consensus
binding sequences of the Sp1 binding sites are boxed. The
pyrimidine- and purine-rich regions are indicated by dotted
lines. The primers used in this study are indicated by
arrows. For the detection of promoter activity, the start
point of each construction is indicated by an
arrowhead.
124/+94 fragment was
prepared by PCR using 32P-labeled O1-FTA and cold O1-FTB,
with pO1-FT as the template. The protected regions are shown as
vertical bars. Lane 1, DNase I digestion pattern
of the free probe; lane 2, assays with Sp1. Dideoxy
sequencing ladders were generated with the 32P-labeled
O1-FTA primer.
Demonstration of Promoter Activity
To determine mST8Sia II gene promoter activities, we used mouse embryonal carcinoma P19 cells in which the mST8Sia II gene dramatically increases during neural differentiation on retinoic acid treatment (21).
To determine whether or not the 5
-flanking sequence of the mST8Sia II
gene contains a cell type-specific promoter, we constructed a reporter
plasmid, pBO1-EN9.6, containing a 9.6-kb 5
-flanking sequence of the
mST8Sia II gene (
9600 to +168) fused to the promoterless luciferase
gene in pPGBII (Fig. 5). The construct was assayed for
promoter activity by transient transfection into undifferentiated and
differentiated P19 cells, and fibroblast NIH 3T3 cells (not expressing
the ST8Sia II gene). As a negative control, pPGBII was transfected
into parallel cultures of each cell line. The luciferase activity due
to each luciferase reporter plasmid was normalized as to the
-galactosidase activity by cotransfecting an internal control
plasmid, pSR
-Gal, carrying a
-galactosidase gene under the
control of the SR
promoter. The pBO1-EN9.6 construct showed the
highest level of promoter activity when expressed in the differentiated
P19 cells, which was 4-fold higher than that in undifferentiated P19
cells. No promoter activity was detected in NIH 3T3 cells. These
results suggest that the 9.6-kb 5
-flanking sequence contains
sufficient information to direct cell type-specific expression of the
mST8Sia II gene.
A series of reporter plasmids containing progressive 5
deletions
between nucleotides
9600 and
9 was constructed, and the plasmids
were examined for their promoter activities in each cell type to map
the regions that regulate cell type-specific gene expression (Fig. 5).
Sequential deletions of the region between nucleotides
9600 and
5400 had little effect on luciferase activity. However, further
deletions from nucleotides
5400 to
3400 increased the promoter
activity in differentiated P19 cells, suggesting the presence of a
negative regulatory element in this region. Deletions up to nucleotide
659 had no effect on the activity in differentiated P19 cells but
increased the activity in undifferentiated P19 cells. Deletions of the
sequence from positions
659 to
293 increased the luciferase gene
expression in differentiated P19 cells but caused a decrease to
one-half in undifferentiated P19 cells. The region between
659 and
293 contained an inverted Sp1 binding site and a pyrimidine-rich
region (Fig. 3). Moreover, further deletions to nucleotide
158
(pBO1-XN0.35) caused the promoter activity to decrease to approximately
half of that of pBO1-SN0.45 in both differentiated and undifferentiated
P19 cells, suggesting the presence of a positive regulatory element in
this region (nucleotides
158 to
293), which contains one Sp1
binding site. Extension of the 5
deletion to nucleotide
9
(pBO1-XN0.15) drastically reduced the promoter activity to the level
seen with the promoterless control vector pPGBII in all cells,
indicating that the sequence between
158 and
9 is necessary for the
minimal promoter activity. Two Sp1 binding sites, which were revealed to be functional on footprinting analysis (Fig. 4), and a purine-rich region were found in the region between
9 and
158. Interestingly, the promoter activities due to the pBO1-XN0.35 and pBO1-SN0.45 constructs were approximately 10-fold higher in differentiated P19
cells than undifferentiated P19 cells. On the other hand, all
constructs gave hardly detectable activity in NIH 3T3 cells, which do
not express the mST8Sia II gene. These results suggest that the 325-bp
sequence upstream from the translational initiation codon (nucleotides
158 to +167) is necessary for the minimum and cell type-specific
promoter activity.
In this study, we determined the entire genomic organization of
the mST8Sia II gene, characterized the functional promoter activity
for the 5
-flanking region in transient transfection assays, and
investigated the expression of the gene in mouse teratocarcinoma P19
cells. We demonstrated that the minimal promoter region of the
mST8Sia II gene is sufficient to express cell type-specific promoter
activity, which is correlated with mST8Sia II gene expression in the
cells.
Previously, the genomic structures of five other sialyltransferase
genes have been reported, i.e. rat galactoside
2,6-sialyltransferase (rST6Gal I) (26, 27), human galactoside
2,3-sialyltransferase (hST3Gal I) (28), human
Gal
1,3GalNAc/Gal
1,4GlcNAc
2,3-sialyltransferase (hST3Gal IV) (29), mouse N-acetylgalactosamide
2,6-sialyltransferase (mST6GalNAc II) (30), and mouse
sialoside
2,8-sialyltransferase (mST8Sia III) (22). The genomic
structure of the mST8Sia II gene was most similar to that of the
mST8Sia III gene, as follows (Fig. 6). The putative
active domains of mST8Sia II and mST8Sia III were encoded by only
three and two exons, respectively, whereas those of the other genes
consisted of at least five exons. In particular, the positions of the
two exon-intron boundaries of the mST8Sia II gene (introns 3 and 5)
and the mST8Sia III gene (introns 2 and 3) were identical, and all of
their splice junctions occurred after the second nucleotide of the
amino acid codon. Although in mST8Sia III sialyl motif L, a highly
conserved putative nucleotide sugar binding domain (31) is encoded by
one exon, the corresponding motif in mST8Sia II is encoded by discrete
exons, like those observed in other genes. The similarity of the
genomic organization and amino acid sequences between mouse ST8Sia II and ST8Sia III suggests that these genes constitute a subgroup distinct from other sialyltransferase genes.
The results of primer extension and S1 protection analyses showed that
mST8Sia II gene has a single transcription initiation site. In
addition, we demonstrated that the 5
-flanking sequence of the
mST8Sia II gene contained a functional promoter that was highly active
in neural differentiated P19 cells, which strongly express the
mST8Sia II gene. Deletion analysis clearly indicated that the minimal
promoter, the region contained within the 158 bp upstream of the
transcription start site (pBO1-XN0.35), exhibited substantial tissue
specificity (Fig. 5). In differentiated P19 cells, an approximately
10-fold increase in promoter activity was observed with the pBO1-XN0.35
construct compared with that in undifferentiated P19 cells. We showed
recently that the expression of the mST8Sia II gene in neural
differentiated P19 cells increased dramatically to a level
approximately 10-20 times higher than that in undifferentiated cells
(21). The increase in minimal promoter activity on neural
differentiation is correlated with the gene expression of mST8Sia II
in P19 cells. Moreover, the promoter activity was negligible in
NIH 3T3 cells, in which the mST8Sia II gene was not expressed.
Therefore, the minimal promoter region may possess the ability to
initiate transcription in a cell-specific fashion.
The proximal region 158 bp upstream from the transcription initiation
site was characterized as a minimal promoter that contained two
functional Sp1 binding sites but lacked consensus TATA and CAAT boxes.
In addition, the 5
-untranslated region of the mST8Sia II gene
contained a large GC-rich domain with the characteristics of a CpG
island. These structural features are usually associated with
housekeeping gene promoters. However, recent studies have shown that
many tissue-specific gene promoters, including neural cell-specific
promoters, include the structural features of housekeeping gene-like
promoters. Neuron-specific TATA-less promoters have been shown to have
either a single transcription initiation site, as observed in the
synapsin I gene (32), synapsin II gene (33), nerve growth factor
receptor gene (34), and several olfactory neuron-specific genes (35),
or to have multiple initiation sites, such as those found in the genes
encoding synaptophysin, the type II sodium channel (36), the
D1A dopamine receptor (37), and brain-specific aldolase C
(38). Therefore, the mST8Sia II promoter may belong to the former
group, i.e. GC-rich and TATA-less promoters with a single
transcription initiation site.
Two Sp1 binding sites were found in the minimal promoter region, and
DNase I protection assays with the purified Sp1 protein revealed that
these two sites were functional (Fig. 4). Moreover, two additional Sp1
binding sites were present in the regulatory regions (
158 to
293
and
293 to
659). It was reported previously that the distantly
located site functions synergistically with the promoter-proximal site
to activate transcription strongly in vivo, and that this
synergism is a direct consequence of interactions between remote and
local Sp1s (39). Deletion of the sequence from positions
158 to
293
of mST8Sia II reduced the promoter activity, suggesting that Sp1 bound
to the site at
170 probably interacts with another Sp1 in the minimal
promoter region. The expression of Sp1 is ubiquitous, but it was
reported previously that Sp1 levels appeared to be highest in
developing hematopoietic cells, fetal cells, and spermatides in the
mouse (40). The regulated expression of the mST8Sia II gene in fetal
and newborn brain and testis seemed to correspond to
that of Sp1. Although Sp1 was found to be expressed in NIH 3T3 and
undifferentiated and differentiated P19 cells (data not shown), the
expression level of the reporter gene fused to the minimal promoter
sequence of ST8Sia II (
158/+168) was very low in undifferentiated
P19 cells and hardly detectable in 3T3 cells. These results suggest
that some cell-specific transcription factor is involved in
differentiated P19 cells and that it might be required for interaction
with Sp1 in the minimal promoter elements, which allows activation of
the mST8Sia II gene promoter. Further studies involving identification
of the regulatory elements and their binding factors will
facilitate elucidation of the tissue-specific and developmental
regulation of ST8Sia II gene expression.
The nucleotide sequence(s) reported in this paper has been submitted to the GenBankTM/EMBL Data Bank with accession number(s) X83562[GenBank] and X99645[GenBank], X99646[GenBank], X99647[GenBank], X99648[GenBank], X99649[GenBank], X99650[GenBank], X99651[GenBank].
To whom correspondence should be addressed. Tel.: 81-48-467-9615;
Fax: 81-48-462-4692; E-mail: stsuji{at}postman.riken.go.jp.
We are grateful to Dr. Yoshitaka Nagai, director of the Glycobiology Research Group, and Dr. Tomoya Ogawa, coordinator of the group, Frontier Research Program of the Institute of Physical and Chemical Research (RIKEN), for their continued support and encouragement regarding our research. We thank Dr. Minoru Yoshida for critical reading of this manuscript.
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