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Volume 271, Number 48, Issue of November 29, 1996 pp. 30870-30878
©1996 by The American Society for Biochemistry and Molecular Biology, Inc.

Characterization of the Mouse Epidermal Growth Factor Promoter and 5'-Flanking Region
ROLE FOR AN ATYPICAL TATA SEQUENCE*

(Received for publication, July 15, 1996)

Suzanne E. Fenton Dagger §, Natalie S. Groce Dagger and David C. Lee Dagger par **

From the Dagger  Lineberger Comprehensive Cancer Center and par  Department of Microbiology and Immunology, University of North Carolina, Chapel Hill, North Carolina 27599-7295

ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
FOOTNOTES
Acknowledgments
REFERENCES


ABSTRACT

As a step toward delineating mechanisms that regulate its activity, we have characterized the mouse epidermal growth factor (EGF) promoter. Primer extension and S1 nuclease analyses identified prominent (+1/+2) and minor (+28) transcription start sites, with the dominant +1/+2 site located 33 bases downstream from a TTTAAA sequence. A restriction fragment that spanned these start sites and contained 390 base pairs of 5'-flanking sequence directed transcription from the +1/+2 site in vitro in the presence of HeLa cell nuclear extracts. Additionally, it promoted expression of a coupled luciferase reporter gene in transfected cell lines. The inclusion of additional 5'-flanking sequence either stimulated or inhibited luciferase expression depending on the cell line. Approximately 2 kilobases of EGF 5'-flanking sequence was determined and found to contain several motifs with partial homology to steroid hormone response elements. Despite this fact and evidence that EGF expression might be regulated by androgens in vivo, EGF promoter-luciferase constructs were not steroid-responsive in cells cotransfected with steroid receptor expression vectors. An oligonucleotide containing the aforementioned TTTAAA sequence specifically bound TATA-binding protein and TFIIA in gel shift assays, and an EGF promoter-luciferase construct in which the core TA dinucleotide was mutated to CG was not active in transfected cells. These data suggest that the TTTAAA sequence functions as an atypical TATA box.


INTRODUCTION

Epidermal growth factor (EGF)1 was first identified in mouse salivary gland extracts as an activity that induced premature eyelid opening and tooth eruption when injected into newborn pups (1). It was subsequently and independently characterized as urogastrone, a component of human urine that inhibited gastric acid secretion (2). Although its precise physiological roles are still not known, EGF is a potent mitogen for many epithelial and mesenchymal cells, and it regulates cellular migration and differentiation in vitro (3). Its numerous actions are a result of high-affinity binding to the EGF receptor, a type I protein tyrosine kinase (4). EGF is the prototype of the EGF receptor ligand family, which includes the mammalian cellular proteins transforming growth factor-alpha (5, 6), amphiregulin (7), heparin binding EGF (8), betacellulin (9, 10), and epiregulin (11), as well as several proteins encoded by Shope family viruses (12, 13). Characteristics of this family include a conserved three-loop structure and the proteolytic processing of soluble ligands from the ectodomains of bioactive, integral membrane precursors (reviewed in Ref. 14). The 53-amino acid mature EGF is derived from a precursor protein (prepro-EGF) of approximately 1200 amino acids (15, 16).

The EGF gene is prominently expressed in the granular convoluted tubules of the submaxillary salivary gland (SG), the distal convoluted tubules of the kidney, Brunner's glands of the duodenum, and alveolar epithelial cells of the mammary gland (17, 18, 19, 20). Other sites of expression have been identified, although some remain controversial. Various findings suggest that expression of the EGF gene in SGs may be regulated by androgens. The male mouse SG contains higher levels of EGF mRNA than its female counterpart, and EGF-positive cells contain androgen receptors (17, 21). Moreover, EGF mRNA levels are increased in SGs of female mice given androgen and, conversely, are decreased in SGs of castrated males (22). Other studies suggest that the EGF gene could also be regulated by estrogens (23) and by the lactogenic hormones prolactin and glucocorticoids (24). Finally, deregulation of EGF expression may be a component of neoplastic progression, since EGF mRNA is markedly elevated in some human tumors compared with their normal tissue counterparts (25, 26, 27, 28, 29, 30).

The molecular mechanisms that regulate transcription of the EGF gene have not been delineated. As an initial step, we have begun to characterize the EGF promoter. In the present study, we have refined the mapping of transcription start sites, shown the putative promoter to be active in vitro and in vivo, investigated possible regulation by androgens and glucocorticoids, and assessed the role of a TATA-like sequence.


EXPERIMENTAL PROCEDURES

Materials

Luciferin, dexamethasone, and dihydrotestosterone were from Sigma; the 129SV mouse genomic library and pBluescript SK+ vector were from Stratagene (La Jolla, CA); and radionucleotides were from DuPont NEN. The HeLaScribe nuclear extract in vitro transcription system, Altered Sites II in vitro mutagenesis system, pGL2-basic luciferase vector, S1 nuclease, RNasin, and avian myeloblastosis virus reverse transcriptase were from Promega Corp. (Madison, WI). Tissue culture reagents, LipofectAMINE, oligo(dT)-cellulose, Taq polymerase, and dNTPs were from Life Technologies, Inc. Human anti-TFIID antibody was obtained from Santa Cruz Biotechnology (La Jolla, CA). Oligonucleotides were synthesized by the University of North Carolina Nucleic Acids Core Facility.

Recombinant human TATA-binding protein (TBP) and TFIIA were gifts from Robert Roeder (Rockefeller University, New York, NY); the mouse glucocorticoid receptor expression vector was donated by Keith Yamamoto (University of California, San Francisco, CA); and the mouse mammary tumor virus (MMTV)-luciferase construct was obtained from Ron Evans (Salk Institute, San Diego, CA). EGF cDNA probes were gifts from Graeme Bell (University of Chicago, Chicago, IL), and the rat androgen receptor expression vector was provided by Elizabeth Wilson (University of North Carolina at Chapel Hill).

DNA Sequence Analysis

The nucleotide sequence of the EGF HindIII-XhoI fragment was determined from both strands by the University of North Carolina Automated DNA Sequencing Facility. Manual dideoxy DNA sequencing (31) was used to resolve ambiguous regions.

Analysis of EGF mRNA 5'-Ends

Cytoplasmic RNA was isolated from cultured cells as described by Gough (32), and poly(A)+ RNA was isolated by oligo(dT)-cellulose chromatography (33). Total RNA was purified from mouse tissues using the guanidinium-cesium chloride method (34). The integrity and concentration of RNAs were verified by gel electrophoresis.

Primer extension and S1 nuclease analyses were performed with 10-20 µg of total RNA as previously reported (35), unless otherwise specified. End-labeled primers were complementary to EGF sequences +131 to +170 (primer 1), +43 to +80 (primer 2), -37 to -76 (primer 3), and -260 to -221 (primer 4) (see Fig. 2A). S1 nuclease probes were generated as previously detailed (35). Primers 1 or 2 were annealed to denatured HX-luc (see Fig. 4A) and extended with the Klenow fragment of Escherichia coli DNA polymerase I. The resulting radiolabeled double stranded products were digested with BanI (-150 bp), and the single stranded probes were isolated from alkaline denaturing gels. Intensities of +1/+2 and +28 primer extension and S1 nuclease products were determined by laser scanning densitometry (UltraScan XL; LKB Produkter, Bromma, Sweden).


Fig. 2. Identification of transcriptional start sites. A, derivation of primer extension and S1 nuclease probes. The approximate location of primers are indicated with bold underlines, and the structures of BanI-cleaved S1 nuclease probes generated with primers 1 and 2 are shown. The relative locations of three putative TATA boxes are illustrated. B, EGF mRNA 5'-end analyses. Total RNA from adult mouse SG (male, 10 µg), kidney (K, female, 10 µg), and brain (B, male, 20 µg) were used as templates in S1 nuclease (lanes 1-3) and primer extension (lanes 4-7) assays. Arrowheads, extension products corresponding to major (+1/+2) and minor (+28) sites that were identified using primer 1. Arrows, doublet of extension products generated with primer 2 that correspond to the +1/+2 start sites. M, T lane from a set of dideoxy sequencing reactions of HX-luc (see Fig. 4A) generated with primers 1 or 2. Note that primers 3 and 4 did not yield primer extension products with either SG or kidney RNA.
[View Larger Version of this Image (32K GIF file)]



Fig. 4. Expression of EGF promoter-luciferase constructs in transfected cells. A, derivation of EGF-luciferase constructs. Restriction enzyme sites used to create EGF promoter-luc vectors with increasing amounts of EGF 5'-flanking sequence are shown. The location of the TTTAAA sequence and +1/+2 transcription start site (arrow) are indicated. The relative positions of BglII and XbaI sites used to generate linear templates for in vitro transcription reactions (Fig. 3) are represented. B, luciferase assays. CHO and NRK-52E cells were transiently transfected with the indicated constructs, and luciferase expression was measured 48 h later as described under "Experimental Procedures." Activity observed with the promoterless vector (pGL2) is shown for comparison. Data are illustrated as mean ± S.E. (bars). For NRK-52E cells, n = 8; for CHO cells, n = 10.
[View Larger Version of this Image (20K GIF file)]


EGF-Luciferase Constructs

EGF promoter and 5'-flanking restriction fragments possessing a common 3'-end at +314 (XhoI site) were cloned upstream of the luciferase gene. The EGF XX and SX fragments were cloned directly into the corresponding pGL2-basic polylinker sites, whereas the EGF DX fragment was inserted into SmaI-XhoI-cleaved pGL2-basic. The EGF HX fragment was excised from XX-luc using a 3'-HindIII site in the polylinker and cloned into the HindIII site of the pGL2-basic in the correct orientation (Fig. 4A).

The EGF TTTAAA sequence (-33 to -28 bp) was mutated to a BstBI site (TTCGAA) in SX-luc using the Altered Sites II in vitro mutagenesis system as described by the manufacturer. Briefly, the SX fragment was subcloned into the ampicillin-sensitive pALTER 1 vector, and a single stranded template was prepared. The first mutant strand was synthesized by annealing the TTCGAA and ampicillin repair oligonucleotides to the single stranded DNA template in the presence of T4 DNA polymerase and ligase. The resulting ligation products were transformed into repair-minus BMH cells for second-strand synthesis of the mutant template. Mutant DNA was isolated and transformed into DH5alpha , and clones corresponding to the double stranded mutated sequence were selected on ampicillin-containing plates. The mutation was confirmed by cleavage with BstB1 and dideoxy sequencing.

In Vitro Transcription

EGF-luciferase constructs were cleaved within the luciferase gene at unique XbaI or BglII sites, and linear templates were isolated from agarose gels prior to use in runoff transcription assays. Transcriptions in vitro were performed using the HeLaScribe nuclear extract in vitro transcription system, with a linear cytomegalovirus (CMV) template included as a positive control. Reactions were carried out in the presence of [alpha 32P]dUTP (3,000 Ci/mmol, 10 mCi/ml, 50 µCi/reaction) as described by the manufacturer. Alternate reactions were performed in the absence of radioactivity, and the resulting RNAs were purified by phenol-chloroform extraction and ethanol precipitation prior to use as templates in primer extension assays.

Cell Culture and Transfection

CHO, NRK-52E, and COS cells (American Type Culture Collection, Rockville, MD) were maintained in Dulbecco's modified Eagle's medium, 10% fetal bovine serum, 50 µg/ml gentamicin, and 0.1 mM nonessential amino acids (maintenance media). For transfection, cells were grown to 50-60% confluence, and complete media were replaced with serum-free media. At time 0, DNAs (1 µg of pGL2-basic or the molar equivalent of larger constructs) were introduced via LipofectAMINE treatment (6 µl of LipofectAMINE/35-mm2 culture dish) as instructed by the manufacturer. Cells were rescued 6-8 h later by the addition of 1 volume of complete media containing 20% serum. After 24 h, transfection media were removed and replaced with maintenance media or, for experiments shown in Fig. 6, media containing steroid hormones. After 42-48 h (or 18-24 h of hormone treatment), cells were harvested for assay. All transfections were performed in duplicate.


Fig. 6. The EGF promoter is not androgen responsive. EGF-luc (EGF-HX) or MMTV-luc constructs were transfected alone or in conjunction with an androgen receptor expression vector (AR) into CHO, NRK-52E, and COS cells. Following transfection, cells were maintained in serum-free media and after 24 h were treated with 0.1 nM dihydrotestosterone for an additional 20-24 h, after which they were harvested for luciferase determination. The data are shown as mean (minus background) ± S.E. (bars). For NRK-52E cells, n = 3; CHO cells, n = 5; and COS cells, n = 6.
[View Larger Version of this Image (26K GIF file)]


Luciferase Expression

Plated cells were resuspended in 1 ml of phosphate-buffered saline (4 °C), pelleted at 14,000 rpm, and resuspended in 300 µl of 100 mM K2HPO4 (pH 7.8). Cells were then lysed with three successive freeze-thaw cycles, and the luciferase activity of individual samples was measured in duplicate. Lysate (100 µl) was placed in the luminometer, and reactions were initiated by automatic injection of 200 µl each of luciferin reagent (200 µM luciferin in 25 mM glycylglycine, pH 7.8) and assay buffer (25 mM glycylglycine, pH 7.8, 15 mM K2HPO4, pH 7.8, 15 mM MgSO4, 4 mM EGTA, 2 mM ATP, and 1 mM dithiothreitol). Luciferase activity was measured for 15 s at ambient temperature immediately following the addition of reagents (AutoLumat LB953 luminometer; Berthold Analytical Instruments, Inc., Nashua, NH). Relative light units were corrected for lysate protein content.

Electrophoretic Mobility Shift Assays

Double stranded DNA probes encoding the EGF promoter TTTAAA sequence (5'-TCGACAGAGCTTTAAAAAGGAGAG-3') and the adenovirus major late promoter TATAAA sequence (5'-GGGCTATAAAAGGC-3') were radiolabeled with 32P and separated from free radionucleotide using a G-50 column. Purified recombinant TBP (His6-human TBP, 7.1 ng) and TFIIA (8 ng) were added to 20-µl binding reactions containing 20 mM HEPES, pH 7.5, 17 mM KCl, 1 mM dithiothreitol, 0.1 mM EDTA, 4% Ficoll, 0.5 µg poly(dI-dC), 5 mM spermidine, 0.0125% Nonidet P-40, and 75 µg/ml bovine serum albumin. For competition reactions, a 25-fold molar excess of unlabeled competitor DNA was added prior to the addition of the probe, and samples were incubated for 15 min on ice. The probe (0.06-0.12 ng, 40,000 cpm) was then added, and the reactions were incubated for an additional 20 min at 25 °C. Resulting products were separated on native 5% polyacrylamide gels containing 1 × Tris/glycine/EDTA, 0.05% Nonidet P-40, and 2.5% glycerol. For supershift reactions, the probe, TBP, and TFIIA were first incubated for 15 min on ice, and then 3 µg of human anti-TBP antibody was added for 20 min at room temperature prior to electrophoresis.


RESULTS

Isolation and Characterization of the Mouse EGF Promoter and 5'-Flanking Region

To evaluate the hormonal and tissue-specific regulation of the mouse EGF gene, we isolated genomic sequences containing the EGF promoter and 5'-flanking region from a 129SV mouse liver genomic library. The probe was a 603-bp fragment generated from a mouse kidney genomic DNA via polymerase chain reaction amplification and primers encompassing the putative EGF promoter (36). Eight positive lambda -FIX II clones were characterized by restriction enzyme cleavage; the largest (7B) contained approximately 17 kb of sequence 5' to exon 1 of the EGF gene as well as approximately 4.5 kb of intron 1 sequence (15, 16). The 22-kb NotI fragment from clone 7B was shuttled into pBluescript SK+ vector, and a partial restriction enzyme map was determined by Southern blotting using the aforementioned 603-bp probe (Fig. 1). Predicted restriction fragments were confirmed by Southern analysis of mouse genomic liver DNA to exclude possible gene rearrangements or splicing events that might have occurred during the cloning process.


Fig. 1. The mouse EGF promoter and 5'-flanking region. A 22-kb genomic DNA fragment encompassing the mouse EGF promoter was isolated from an 129SV library using a polymerase chain reaction-derived probe corresponding to bases +60 to -528 (36). The clone was restriction enzyme mapped by comparison with lambda -HindIII molecular weight markers in Southern analysis. The location of the major (+1/+2) transcription start site is indicated (arrow). black-square, pBluescript SK+ sequence. Restriction enzyme sites are: AI, AvaI; AII, AvaII; Ac, AccI; BI, BglI; BII, BglII; Bm, BamHI; E, EcoRI; H, HindIII; Hp, HpaI; N, NotI; P, PstI; Sa, SacI; Sc, ScaI; Se, SpeI; Sl, SalI; Sp, SphI; St, StuI; Xb, XbaI; and Xo, XhoI. Enzymes that did not cut the 22-kb fragment include AatII, ClaI, KpnI, PvuI, and SmaI.
[View Larger Version of this Image (7K GIF file)]


Identification of the EGF Transcription Initiation Sites

Using S1 nuclease analysis, a single primer, and mouse SG and kidney RNAs, Pascall and Brown (36) previously identified a single prominent and two minor downstream EGF mRNA 5'-ends. By comparison with a molecular weight ladder, they associated the prominent band with a cytosine residue. Since the mouse EGF promoter contains multiple TA-rich elements that could function as atypical TATA boxes (see Fig. 2A), we wanted to exclude possible transcription initiation at other sites in the flanking regions. Additionally, we wanted to more accurately map transcription initiation sites by comparison with sequence ladders derived from the EGF promoter region itself. Accordingly, we synthesized a set of four oligonucleotide primers, each of which corresponded to sequences downstream of three putative TATA box-like sequences as well as the previously reported EGF 5'-end (Fig. 2A). Primers 1-4 were used in primer extension assays, whereas radiolabeled primers 1 and 2 were used to make S1 nuclease probes with uniform 5'-ends produced by BanI cleavage (see Fig. 2A). Since EGF mRNA is expressed at particularly high levels in adult mouse SG and kidney but is present at very low or undetectable levels in brain (17),2 we used total mRNA from these three tissues as templates in the primer extension and S1 nuclease assays.

Fig. 2B shows that when radiolabeled primer 1 was used in primer extension assays with SG and kidney RNAs, a prominent cluster of two or more bands of roughly 170 bases in length was observed. Primer 2 confirmed this result and resolved the cluster to two principle bands; by comparison with an EGF promoter sequencing ladder generated from the same primer, these two bands corresponded to adjacent adenosine residues located immediately 3' to the cytosine previously identified by Pascall and Brown (36). We hereafter refer to the most 5'-adenosine residue as +1. Using RNAs from SG and kidney, primer 1 also detected a less prominent 5'-end corresponding to an adenosine at +28 and occasionally other minor extension products as well. The +28 site likely corresponds to a minor 5'-end previously identified (36) in SG samples, which they associated with an adenosine residue located two bases further upstream. The +28 product could not be confirmed with primer 2, since the latter corresponds to sequences from +43 to +80. However, S1 nuclease assays performed with SG and kidney RNAs and probes generated from primers 1 (Fig. 2B) and 2 (data not shown) yielded prominent products corresponding to both the +1/+2 and +28 sites. In contrast, primer extension reactions with primers 3 and 4 (Fig. 2A) did not yield products with any of the mouse RNAs tested, even when higher concentrations of RNA were used (20 versus 10 µg). The fact that +1/+2 and +28 primer extension and S1 nuclease products were most abundant in SG versus kidney RNA and were not detected with brain samples is consistent with the relative EGF mRNA abundance in these tissues as judged by Northern blot analysis (17).2 Collectively, these data confirm and refine the previously reported EGF mRNA 5'-ends (36). Specifically, they indicate that transcription of the EGF gene in SG and kidney initiates at two sites, with the +1/+2 site being dominant. Interestingly, densitometric analysis of the autoradiographs shown in Fig. 2B revealed that the +1/+2 site is used 7-fold more frequently than the +28 site in SG, but only 2-fold more frequently in kidney. This suggests that transcription is selectively enhanced via the +1/+2 site in SG.

Transcriptional Activity of the EGF Promoter and 5'-Flanking Region

Functional activity of the putative EGF promoter has not been previously demonstrated. Accordingly, we tested its activity both in vitro and in vivo. To assay its ability to direct transcription in vitro in the presence of crude HeLa cell nuclear extracts (Promega), an XhoI fragment containing 6.7 kb of sequence 5' of the start site was cloned upstream of the firefly luciferase gene (XX-luc), and runoff templates were produced by cleavage at unique sites (BglII or XbaI) within the luciferase gene. The dihydrofolate reductase and CMV promoter constructs were also linearized and used in conjunction with radiolabeled molecular weight markers for size comparisons. As expected, the ScaI-linearized dihydrofolate reductase template produced two bands of 780 and 736 bases (37), whereas the linearized CMV template yielded a product of 363 bases (Fig. 3). Transcription of the XbaI-cleaved EGF-luciferase template produced two closely spaced products not observed with the parental luciferase vector. The larger product was a diffuse band(s) of approximately 401-410 bases; the smaller, more distinct product had an estimated length of 385 bases. These sizes are similar to those expected on the basis of nucleotide sequence for runoff products initiated at the +1/+2 (404 bases) and +28 sites (376 bases), respectively (Fig. 3). Consistent with these results, transcription of an EGF-luciferase template that had been cleaved at a BglII site closer to the EGF promoter produced two similarly spaced bands of appropriately reduced size (data not shown). Additionally, although transcription of alternate EGF-luciferase templates containing 390 (SX-luc) or 2000 (HX-luc) bases of 5'-flanking sequence produced comparable products, a template containing only 30 bases of 5'-flanking sequence (DX-luc) did not yield identifiable transcripts (data not shown). The latter result suggests that sequences upstream of -30 are required for EGF promoter activity in vitro.


Fig. 3. Transcription in vitro of EGF-luciferase vectors. Left, the XX-luc plasmid was linearized with XbaI and transcribed in the presence of crude HeLa cell nuclear extract. Resulting products were resolved on a 6% acrylamide-urea gel as described under "Experimental Procedures." Arrowheads, specific transcripts derived from the EGF promoter template. Products resulting from transcription of linearized dihydrofolate reductase and CMV promoters are shown for comparison. Markers (M) are radiolabeled HaeIII phi X174 fragments. Assays were repeated three times. Right, RNA (20 µg) derived by in vitro transcription of the XX-luc construct was annealed to primer 1 and analyzed by primer extension as in Fig. 2B. Arrowhead, prominent extension product(s) corresponding to initiation in vitro at the +1/+2 site.
[View Larger Version of this Image (41K GIF file)]


To verify correct initiation in vitro, transcripts derived from the XhoI-XhoI EGF-luciferase construct were assayed by primer extension using primer 1. Fig. 3 shows that a dominant extension product corresponding to the +1/+2 site was obtained together with minor, smaller products. Notably, despite the generation of an in vitro transcript the size of which appeared consistent with initiation at +28 (Fig. 2B), no corresponding extension product was observed. However, aberrant minor products were evident at bases +41 and +55.

Transcriptional activity in vivo was established via transient transfection of EGF-luciferase constructs into cultured cell lines. EGF fragments possessing a common 3'-end (XhoI; +314) but containing 6.7 kb (XhoI-XhoI; XX), 2.0 kb (HindIII-XhoI; HX), 0.4 kb (SacI-XhoI; SX), and 0.03 kb (DraI-XhoI; DX) of sequence 5' to the transcriptional start site were cloned upstream of the luciferase reporter gene in pGL2 (Fig. 4A). The final vectors were then transiently transfected into CHO and NRK-52E cells, and the resulting luciferase activity was measured after 48 h. As shown in Fig. 4B, EGF promoter activity was confirmed in both cell types, although the effect on luciferase activity of increasing amounts of EGF 5'-flanking sequence differed considerably between the two cell lines. Thus, in CHO cells, optimal activity was obtained with SX-luc, which yielded a 5-fold increase in luciferase activity relative to the promoterless vector; the inclusion of an additional 5'-flanking sequence decreased luciferase expression from HX- and XX-luc to only 2.2- and 1.3-fold above background, respectively. In contrast, in NRK-52E cells, the larger HX- and XX-luc constructs were most active, yielding 60- and 62-fold increases in luciferase activity over background, respectively. In both CHO and NRK-52E cells, the DX-luc construct, which contained only 30 bases of 5'-flanking sequence, was inactive, consistent with the in vitro transcription results described above. Primer extension assays performed with primer 1 and poly (A)+ RNA from cells transfected with XX-, HX-, and SX-luc yielded extension products that by comparison with an EGF promoter sequence ladder corresponded to initiation at the +1/+2 site (data not shown).

Although in NRK-52E cells, SX-luc was less active than larger templates containing more 5'-flanking sequence, it nevertheless produced a greater fold stimulation over the promoterless vector in this cell type than in CHO cells (20- versus 5-fold). In fact, relative to the pGL2-basic background or to levels of activity produced by CMV- and SV40-luc templates, the EGF promoter was dramatically more active in NRK-52E cells (and in kidney-derived COS cells; see Fig. 6) than in CHO cells, even though CHO cells transfect with considerably greater efficiency than NRK-52E cells. Whether this cell type enhancement reflects tissue-specific regulation of the EGF promoter is presently unknown.

Sequence Analysis of the Proximal EGF Promoter Region

The nucleotide sequence of the 2.3-kb HindIII-XhoI fragment, which contains approximately 2 kb of sequence 5' to the dominant +1/+2 start site, is shown in Fig. 5. The translational start site is at +352 bp (15, 16) and is not shown. The sequence from -897 to +314 bp is identical to that previously reported (36). In addition to a putative atypical TATA box (TTTAAA) at -33 bp (see below), the EGF promoter contains several polypurine-rich motifs and consensus binding sequences for the transcription factors no. NFkappa B, GAS, AP-1, AP-2, AP-3, Sp1, p53, and C/EBP (Fig. 5), as defined by the transcription factor data set in the Genetics Computer Group program.


Fig. 5. Nucleotide sequence of the EGF promoter region. The complete nucleotide sequence of the HindIII-XhoI fragment was determined for both strands by the University of North Carolina Automated DNA Sequencing Facility. Restriction enzyme sites used to make EGF-luciferase constructs are identified. Transcription start sites at +1/+2 and +28 are boxed, and the atypical TATA motif, TTTAAA, is bracketed below. Two 6-bp steroid hormone response element half-sites and a 15-base pair element that is 73% homologous to the consensus HRE are underlined. Consensus binding sites identified by the transcription factor data set in the Genetics Computer Group program are NFkappa B (arrows), Sp1 (overhead bracket), GAS (dashed line), AP-1 (large dots), AP-3 (open squares), and p53 (small dots).
[View Larger Version of this Image (70K GIF file)]


The EGF-Luciferase Constructs Are Not Androgen Responsive

As mentioned above, studies in vivo suggest that the EGF gene may be responsive to androgens. Our sequence revealed that the EGF promoter 5'-flanking sequence from -648 to +314 contains two six-base sequences that are identical to the 3'-portion of the 15 base consensus steroid hormone response element (HRE, GGTACANNNTGTTCT; Ref. 38), and the additional 5'-flanking region from -2048 to -649 includes several other potential half-sites. Furthermore, a 15-base sequence from +226 to +240 is 73% identical to the consensus HRE. To determine whether any of the putative HREs confer direct androgen responsiveness on the promoter, EGF-luciferase constructs were transiently transfected into COS, CHO, and NRK-52E cells either alone or in conjunction with mouse androgen receptor expression vector (provided by Elizabeth Wilson). Following transfection, cells were maintained in serum-free media and after 24 h were exposed to 0.1 nM dihydrotestosterone. An additional 24 h later, cells were harvested, and luciferase expression was measured. For comparison, cells were transfected with an MMTV-luc expression vector (provided by Ron Evans). Fig. 6 shows that activity from MMTV-luc was induced by the combination of androgen receptor expression and dihydrotestosterone treatment in all three cell lines. Relative to expression in nontreated control cells, MMTV-luc activity was increased 4-, 6-, and 9-fold in NRK-52E, CHO, and COS cells, respectively. In contrast, HX-luc activity was decreased in CHO and NRK-52E cells in response to hormone treatment. And although the overall EGF-luc activity was higher in COS cells, it was insignificantly increased in hormone-treated samples (Fig. 6). A similar lack of induction by androgens was observed with the EGF XX- and SX-luc constructs (data not shown). We also tested the EGF promoter for glucocorticoid responsiveness. Whereas MMTV-luc was induced more than 25-fold in the presence of dexamethasone and glucocorticoid receptor (provided by Keith Yamamoto), the activity of the EGF XX-, HX-, and SX-luc constructs was unchanged compared with expression in nontreated control cells (data not shown). Interestingly, we note that these experiments revealed the EGF promoter to be dramatically less active in the absence of serum in all three cell lines (compare Figs. 4 and 6).

The Atypical TTTAAA Sequence at -33 bp Is Required for Maximal EGF Promoter Activity

As previously noted, the EGF promoter contains a TTTAAA sequence located from -33 to -27 bp upstream of the +1/+2 start site. The finding that the DX-luc construct, which deletes 5'-sequences to -30 bp, had negligible activity in vitro and in vivo is consistent with a possible role for the TTTAAA sequence as an atypical TATA box. To specifically assess the role of the TTTAAA motif, we examined both its ability to bind TBP in vitro and tested its requirement for efficient EGF promoter activity in vivo. To test binding via electrophoretic mobility shift assay, we used a combination of TBP and TFIIA (provided by Robert Roeder), since the binding of TBP to TATA box sequences is facilitated in the presence of TFIIA (39). Fig. 7 shows that a 14-bp probe corresponding to the TATA sequence of the adenovirus major late promoter (AdMLP) displayed the expected mobility shift in the presence of TBP·TFIIA, and that the formation of the product was competitively inhibited in the presence of a 25-fold excess of unlabeled AdMLP double stranded oligonucleotide. A 20-bp double stranded probe encompassing the EGF promoter TTTAAA sequence displayed a similar mobility shift in the presence of TBP·TFIIA, and this binding was specifically inhibited in the presence of a 25-fold molar excess of unlabeled TTTAAA oligonucleotides. Importantly, the mobility shift was also blocked in the presence of a 25-fold molar excess of the unlabeled AdMLP oligonucleotide, and conversely, the mobility shift of the AdMLP probe was inhibited in the presence of the EGF TTTAAA sequence. In contrast, an otherwise identical EGF oligonucleotide in which the TTTAAA sequence was altered to TTCGAA only weakly inhibited the binding of TBP·TFIIA to either the EGF TTTAAA or the AdMLP TATA probes. Finally, the addition of anti-TBP antibody (Santa Cruz Biotechnology) to reactions containing the EGF TTTAAA probe and TBP·TFIIA caused a partial supershift of the bound probe (Fig. 7). These data establish the ability of the TTTAAA sequence to bind the TBP·TFIIA complex in vitro.


Fig. 7. The EGF promoter TTTAAA sequence binds TBP. A radiolabeled, double stranded oligonucleotide probe (-33) corresponding to EGF promoter sequences from -38 to -21 and encompassing the TTTAAA sequence was tested for binding to recombinant TBP·TFIIA as described under "Experimental Procedures." Shown for comparison are analyses with a 14-bp probe containing the AdMLP TATAA sequence. For competitions, a 25-fold excess of unlabeled probe was added to TBP·TFIIA on ice for 15 min prior to addition of the labeled probe. A double stranded oligonucleotide (mut), which is identical to -33, except that the TTTAAA sequence was altered to TTCGAA, was also used in competitions. Assays were repeated three times. Exposure times were 15 h for lanes 1-10 and 40 h for lanes 11-13.
[View Larger Version of this Image (61K GIF file)]


To test the requirement for the TTTAAA sequence in vivo, we compared the activity of a wild-type SX-luc construct with that of a mutant SX-luc in which the TTTAAA sequence had been converted to TTCGAA by site-directed mutagenesis. Compared with background (pGL2-basic) levels, SX-luc in this experiment yielded 3.7- and 10-fold increases in luciferase expression in CHO and NRK-52E cells, respectively (Fig. 8). In contrast, expression of luciferase from the SX-luc mutant construct was comparable with that of the promoterless vector control in both cell lines. These data confirm that the TTTAAA sequence is required for efficient expression of the EGF promoter in vivo.


Fig. 8. The TTTAAA sequence is required for EGF promoter activity. EGF promoter-luciferase (SX) vectors containing either the wild-type TTTAAA (-33 to -28) or the mutant TTCGAA sequences were transfected into CHO and NRK-52E cells as described under "Experimental Procedures." Luciferase activities obtained with the promoterless vector (pGL2) are shown for comparison. Data are shown as mean ± S.E. (bars); n = 5.
[View Larger Version of this Image (25K GIF file)]



DISCUSSION

Our results show that transcription of the EGF gene principally initiates at adjacent adenosine residues located approximately 30 bp downstream from the TTTAAA sequence. Our data further suggest that transcription initiates less frequently at a single adenosine located downstream of the primary site, at +28. However, although 5'-ends corresponding to this +28 start site were detected in both SG and kidney RNAs by complementary primer extension and S1 nuclease analyses, we could not confirm that this site was used in in vitro transcription assays or in transfected cells. Conceivably, transcription from this site could be dependent on cell-specific or labile transcription factors. Nevertheless, our data provide important confirmation of EGF promoter activity both in vitro and in vivo. In this regard, it is interesting to note that the EGF promoter-luciferase construct was considerably more active in the two kidney-derived cell lines, NRK-52E and COS, than in CHO cell lines. Since the kidney is one of two sites of marked EGF expression, it is tempting to ascribe these cell type differences in activity to tissue-specific regulation of the EGF promoter. However, the relationship of the two cell lines to EGF-expressing cells in the distal convoluted tubules in the kidney is uncertain, and the underlying basis of this phenomenon requires further investigation.

Our data indicate that the EGF promoter and 5'-flanking region are not directly responsive to either androgens or glucocorticoids. Work from a number of laboratories suggests that EGF expression can be influenced by these hormones, particularly androgens, in vivo. For example, the SGs of sexually mature male mice were found to contain markedly higher levels of EGF mRNA than those of counterpart females, and the treatment of adult female mice with testosterone resulted in an average 16-fold increase in SG levels of EGF mRNA over a period of several days (22). Similar observations have been made at the protein level. Thus, SGs of male mice contained up to 400 pmol of EGF/mg of protein, whereas corresponding concentrations in female mice were only 5-20 pmol of EGF/mg of protein (40). Moreover, EGF protein levels were increased 4-40-fold in SGs of normal female mice 6 days after administration of testosterone (41), and the corresponding concentrations in androgen-insensitive tfm/y male mice were as low as those of untreated females (42). These various findings have been supported by surgical manipulations; castration at 8 weeks of age resulted in a marked reduction of SG EGF mRNA and protein levels, whereas ovariectomy produced a 100-fold increase in SG EGF mRNA levels (40). Finally, administration of testosterone to hypophysectomized mice induced SG EGF levels nearly 40-fold, with co-administration of testosterone and thyroid hormone producing a synergistic response (43).

In light of the aforementioned observations, we determined the nucleotide sequence of nearly 2500 bp of DNA flanking the transcription start sites to identify potential androgen-responsive elements. The consensus androgen response element GGTACANNNTGTTCT (38) is similar or identical to the glucocorticoid, progesterone, and mineralocorticoid response elements, and hence the universal term HRE is used. Although the EGF 5'-flanking region does not contain consensus HREs, a 15-bp sequence displaying 73% homology is located approximately 230 bp downstream from the +1/+2 site, and several TGTTCT motifs corresponding to the 3' 6-bp portion of the HRE are present upstream of the start site. Analysis of probasin gene promoter studies indicates that functional androgen-responsive elements can diverge considerably from the 15-bp consensus androgen-responsive element, and that when reiterated, the 3'-TGTTCT sequence can function in the absence of significant homology to the 5'-portion of the HRE (44). Other studies suggest that sequences flanking the putative androgen-responsive element can exert significant influence on hormone responsiveness (45, 46). Hence, it was important to directly test the androgen responsiveness of the EGF promoter. In fact, our data indicate that genomic fragments containing the EGF promoter and up to 7 kb of 5'-flanking sequence are not androgen sensitive. It is still possible that sequences located either far upstream or downstream of the proximal promoter confer androgen responsiveness on the EGF gene. For example, sequences responsible for androgen regulation of the mouse beta -glucuronidase gene have been mapped to intron 9 (47). Alternatively, since androgen-induced increases in EGF expression have only been demonstrated in vivo, it is possible that they are not direct responses, particularly since they are typically measured after several days of hormone treatment and are accompanied by changes in the size and morphology of the EGF-expressing SG cells (22, 40, 43). The finding that kidney EGF mRNA levels are not altered following castration, ovariectomy, or administration of androgen (40) is consistent with this explanation.

Importantly, our results support a role for the TTTAAA sequence as an atypical TATA box. The TTTAAA sequence is positioned a conventional distance upstream from the +1/+2 initiation site, and the degree to which mutation of the sequence impairs EGF promoter activity strongly argues that it normally influences transcription from this predominant start site. Atypical, but apparently functional, TATA motifs have been implicated in the transcription of other genes. Interestingly, a TTTAAA sequence is found at comparable distances upstream of initiation sites in a number of promoters, including those for the P-450c27/25 (48), herpes simplex virus UL38 (49), bovine and porcine outer dense fibers (50), prostatic arginine esterase (51), and rat somatostatin (52) genes. Efficient transcription in vitro from the P-450c27/25 promoter requires the intact TTTAAA motif, suggesting that it functions as a cryptic TATA box (48). The presence of a functional TATA-like element in the EGF promoter may, at least in part, account for its dramatic expression in mouse SG and kidney. This tissue-specific pattern contrasts with that of the related transforming growth factor alpha , which is more broadly expressed and at levels significantly lower that those of EGF mRNA in kidney and SG. Interestingly, the transforming growth factor alpha  promoter differs in having a much higher G+C content (>80% versus 45% for the EGF promoter) and multiple binding sites for the transcription factor Sp1 and in not possessing a recognizable TATA-like motif. These are all characteristics of so-called housekeeping gene promoters (reviewed in Ref. 14). A T5C5 sequence in the transforming growth factor alpha  promoter is reported to bind TBP in electrophoretic mobility shift assays (53), but the functional significance of this observation has not been established. Finally, it is interesting to note that the EGF promoter contains an additional TTTAAA (-311 to -306), as well as a consensus TATATA (+25 to +30). However, our data indicate that neither of these sequences is associated with detectable transcription start sites.

Given that EGF was discovered more than 30 years ago, it is surprising that the molecular regulation of EGF transcription has not been characterized. The studies described here are a first step toward understanding tissue-specific and hormonal regulation of EGF production, as well as the mechanisms by which EGF expression is deregulated in neoplastic progression.


FOOTNOTES

*   This work was funded by National Institutes of Health Grant CA43793 (to D. C. L.). The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.

The nucleotide sequence(s) reported in this paper has been submitted to the GenBankTM/EMBL Data Bank with accession number(s) U69534[GenBank].


§   Supported by NCI postdoctoral Grants CA09156 and CA63775.
   Recipient of a summer research training grant from the University of North Carolina School of Medicine.
**   To whom correspondence should be addressed: University of North Carolina, CB 7295, Lineberger Comprehensive Cancer Center, Chapel Hill, NC 27599. Tel.: 919-966-5912; Fax: 919-966-3015; E-mail: dclee{at}med.unc.edu.
1   The abbreviations used are: EGF, epidermal growth factor; SG, salivary gland; HRE, steroid hormone response element; CMV, cytomegalovirus; MMTV, mouse mammary tumor virus; luc, luciferase; AdMLP, adenovirus major late promoter; TBP, TATA binding protein; bp, base pair; CHO, Chinese hamster ovary; NRK, normal rat kidney; kb, kilobase.
2   S. E. Fenton, unpublished observation.

Acknowledgments

We thank Geri Youngblood, Jan Sumeral, Elizabeth Wilson, and members of the Lee laboratory for constructive technical advice and Robert Roeder, Ron Evans, Keith Yamamoto, and Elizabeth Wilson for crucial reagents.


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