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Volume 271, Number 49,
Issue of December 6, 1996
pp. 31243-31250
©1996 by The American Society for Biochemistry and Molecular Biology, Inc.
The Upstream Regulatory Region of the Carbamoyl-phosphate
Synthetase I Gene Controls Its Tissue-specific, Developmental, and
Hormonal Regulation in Vivo*
(Received for publication, April 10, 1996, and in revised form, September 4, 1996)
Vincent M.
Christoffels
,
Maurice J. B.
van den Hoff
,
Marinus
C.
Lamers
§,
Marian A.
van Roon
¶,
Piet A. J.
de Boer
,
Antoon F. M.
Moorman
and
Wouter H.
Lamers

From the University of Amsterdam, Department of
Anatomy and Embryology, Meibergdreef 15, 1105 AZ Amsterdam, The
Netherlands, § Max-Planck-Institut für Immunbiologie,
Stübenweg 51, D-79108 Freiburg, Germany, and the
¶ Academical Medical Center, Genetically Modified Mice Facility,
Meibergdreef 9, 1105 AZ Amsterdam, The Netherlands
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
FOOTNOTES
Acknowledgments
REFERENCES
ABSTRACT
The carbamoyl-phosphate synthetase I gene is
expressed in the periportal region of the liver, where it is activated
by glucocorticosteroids and glucagon (via cyclic AMP), and in the
crypts of the intestinal mucosa. The enhancer of the gene is located
6.3 kilobase pairs upstream of the transcription start site and has
been shown to direct the hormone-dependent
hepatocyte-specific expression in vitro. To analyze the
function of the upstream region in vivo, three groups of
transgenic mice were generated. In the first group the promoter drives
expression of the reporter gene, whereas the promoter and upstream
region including the far upstream enhancer drive expression of the
reporter gene in the second group. In the third group the far upstream
enhancer was directly coupled to a minimized promoter fragment.
Reporter-gene expression was virtually undetectable in the first group.
In the second group spatial, temporal, and hormonal regulation of
expression of the reporter gene and the endogenous carbamoyl-phosphate
synthetase gene were identical. The third group showed liver-specific
periportal reporter gene expression, but failed to activate expression
in the intestine. These results show that the upstream region of the
carbamoyl-phosphate synthetase gene controls four characteristics of
its expression: tissue specificity, spatial pattern of expression within the liver and intestine, hormone sensitivity, and developmental regulation. Within the upstream region, the far upstream enhancer at
6.3 kilobase pairs is the determinant of the characteristic hepatocyte-specific periportal expression pattern of
carbamoyl-phosphate synthetase.
INTRODUCTION
The ornithine cycle converts ammonia, originating mainly from
amino acid metabolism, into urea for excretion. This conversion is
vital, because ammonia is toxic to vertebrates. All five ornithine cycle enzymes are active predominantly in the periportal hepatocytes (1, 2, 68). Parts of the cycle, however, are also found in the
intestinal mucosa and the kidney, thereby creating an interorgan biosynthetic pathway for arginine biosynthesis (reviewed in Refs. 1, 3,
and 4). The first and, under most conditions, major flux-determining
step of the ornithine cycle, the conversion of ammonia, bicarbonate,
and ATP into carbamoyl phosphate, is catalyzed by carbamoyl-phosphate
synthetase I (CPS; EC 6.3.4.16)1 (1, 5).
The expression of CPS mRNA can be detected in the liver of the rat
from embryonic day 15 (ED15) onwards. Expression is initially found
only in a few hepatocytes, but toward the end of the fetal period all
hepatocytes have been recruited to express CPS (6, 7, 8). Subsequently,
the expression gradually becomes confined to the hepatocytes
surrounding the portal veins (8, 9, 10). CPS enzyme and mRNA levels in
liver change in parallel under experimental conditions that change
circulating glucocorticosteroid and hepatic cyclic AMP levels (3,
11, 12, 13, 14), suggesting that the zonal restriction and hormonal modulation
of CPS expression are regulated at the level of transcription. Accordingly, it was shown that glucocorticosteroids and cyclic AMP
enhance transcription of the CPS gene in prenatal and adult hepatocytes
(3, 14, 15, 16, 17). The only other cells producing CPS mRNA and protein
are the enterocytes of the small intestine that express CPS from ED13
onward (8, 11). The regulation of the expression of CPS in the liver
and the intestine differs in the sense that the developmental changes
in both organs do not occur in parallel and that hormonal modulation is
not seen in the intestine (3, 11).
The CPS gene is a single-copy, 110-kilobase pair (kbp) gene that
contains 38 exons and is surrounded by matrix-attachment regions
(18, 19, 20, 21). The mRNA is 5546 nucleotides (nt) in length (excluding
the poly(A) tract) and consists of a 140-nt 5 -untranslated region, an
open reading frame of 4500 nt, and a 3 -untranslated region of 906 nt
(18). Functional analysis of the 5 part of the gene showed that the
minimal, fully active promoter is located within the 161 nt upstream of
the transcription-initiation site (20). DNase I footprint analysis of
this region revealed three protected sites (22, 23), but the actual
identity of the factors occupying these sites is not known (24).
Between the TATA motif at position 21 and protected site I, a
so-called "GAG" element was identified (24), which resembles the
element recognized by the TFIIIA-like class of transcription factors, which includes Sp1, but is not a target of Sp1 itself. The promoter alone does not confer tissue specificity in transient transfection experiments (25).
Scanning CPS gene sequences between 12 kbp upstream and 4 kbp
downstream of the transcription-initiation site in in vitro transfection experiments revealed the existence of only a single enhancer region (20, 25, 26). This 469-base pair (bp) region harbors a
cyclic AMP-response element (CRE) and a
glucocorticosteroid-response element (GRE), and confers
strong hormone-dependent, tissue-specific expression (25).
Analysis of the interaction between the enhancer and the CPS promoter
revealed that, in addition to the TATA-box, the GAG-box is instrumental
in conferring the enhancer activity (25, 26).
To study the regulatory potential of the upstream region including the
far upstream enhancer in vivo, two groups of transgenic mice
were generated: CPSK mice in which a 1.8-kbp upstream region including
the proximal promoter drives reporter gene expression and CPSL mice in
which a 12-kbp 5 -upstream region, including both the promoter and the
far upstream enhancer, drives reporter gene expression. Four
characteristics were used to assess the regulatory role of these
sequences in CPS expression in vivo: organ specificity,
topography of expression within the liver and the small intestine,
responsiveness to hormonal treatment, and developmental changes in
reporter mRNA levels. To test the hypothesis, that the far upstream
enhancer is the major determinant in the regulation of CPS gene
expression, CPSE mice were generated, in which the luciferase reporter
gene is driven by the 469-bp enhancer in conjunction to the minimized
CPS promoter.
EXPERIMENTAL PROCEDURES
Animal Care
Animals were housed with a 12-h light and 12-h
dark cycle, and permitted ad libitum access to water and
standard pellet-type diet. This study was performed in accordance with
the Dutch guidelines for the use of experimental animals.
Generation and Screening of Transgenic Mice
Three
constructs were used for the generation of transgenic mice (see Fig.
1). The constructs are based on a pBluescript-derived vector containing
the promoterless chloramphenicol acetyltransferase (CAT) reporter gene
(CPSK and CPSL) or the promoterless modified luciferase gene (CPSE;
1.8-kbp HindIII/EcoRI luc+ fragment of pSPluc+; Promega, Madison, WI) in conjunction with the SV40 small t-antigen intron and polyadenylation signal optimized for expression (20, 27). The CAT-reporter gene constructs are flanked by NotI restriction sites, and the luc+ reporter
gene cassette is flanked by KpnI (5 ) and SstI
(3 ) to allow removal of vector sequences. The CPSK construct contains
genomic rat CPS I gene sequences from 1.8 kbp (BamHI) to
138 bp (MnlI) upstream of the CAT gene. The CPSL construct
contains genomic rat CPS I gene sequences from 12 kbp
(BamHI) to 138 bp (MnlI) upstream of the CAT
gene. The CPSE construct contains the 469-bp genomic rat CPS I enhancer fragment (25) in conjunction to genomic rat CPS I gene sequences from
161 bp (PstI) to 138 bp (MnlI) upstream of the
luc+ gene (see Fig. 1). The isolated NotI
fragments (CPSK and CPSL) or KpnI/SstI fragment
(CPSE) were injected into the pronuclei of zygotes of C57Bl6/N mice
(CPSK and CPSL) or FVB mice (CPSE), and the injected embryos were
implanted in pseudopregnant foster mothers (28). Transgenic offspring
were identified by polymerase chain reaction (PCR) on tail-tip lysates
(29), using primers specific for SV40 sequences (SV40i, CAG GCA TAG AGT
GTC TGC; SV40pA, CTG GGG ATC CAG ACA TGA). Copy numbers of constructs
integrated in the genome were determined by Southern blot analysis of
10 µg of tail-tip DNA digested with PstI. Calibration
standards consisted of 10-500 pg of the 1.4-kbp PstI
fragment of the SV40 sequences of the expression vector hidden in 10 µg of tail-tip DNA of a nontransgenic mouse.
Fig. 1.
Constructs used for the generation of
transgenic mice. Hatched box, the CPS promoter ( 161 to
138); white box, the CAT or luciferase reporter gene and
SV40 sequences added for RNA processing. Black box, the
469-bp far upstream enhancer element. Gray box, the
translated part of the first exon of the CPS gene (+139 to 266) that is
absent in the constructs.
[View Larger Version of this Image (11K GIF file)]
Treatment of Animals
To induce CPS expression in the liver
and to reverse its portocentral gradient of expression (13), 48-h
starved or diabetic CPSL animals were injected intraperitoneally with
dexamethasone phosphate (3 mg/kg body weight) 16 h before
sacrifice.
Diabetes was induced by intraperitoneal injection of streptozocin
(Sigma; 200 mg/kg body weight) in 24-h starved
animals. Thereafter the animals were allowed free access to food.
30 h after streptozotocin treatment dexamethasone phosphate (3 mg/kg of body weight) was injected intraperitoneally, and 16 h
before sacrifice the diabetic condition was diagnosed by measuring
glucosuria (Haemo-Glucotest 1-44R; Boehringer Mannheim). Treated
animals showed concentrations higher than 44 mM, whereas
untreated animals showed concentrations below the detection limit (1 mM).
CAT Assay
CAT activity in the organs was determined in
tissue homogenates as described by Seed and Sheen (30) with
modifications (31). The detection limit for CAT activity was defined as
three times background (50 cpm), which is equivalent to approximately
0.05 milliunit. Calibration curves for the amount of CAT activity
present in the samples consisted of 0-50 milliunits of CAT
(Sigma), supplemented with 100 µg of total liver
protein from a negative C57Bl6/N mouse. CAT activity is expressed as
picomoles of product/min·mg protein (37 °C).
Luciferase Assay
To determine the luciferase activity,
organs were immediately frozen in liquid nitrogen after isolation.
Homogenates were prepared at 0 °C by use of a Potter-Elvehjem type
homogenizer in 100 mM KPO4 (pH 7.8), 10%
glycerol, 0.2% Triton X-100, 1 mM EDTA, and 1 mM dithiotreitol. After centrifugation at 4 °C in a
microcentrifuge (Beckman) for 5 min, total protein content in the
supernatant was measured using the bicinchoninic acid protein assay
reagent of Pierce. The luciferase activity of 15 µl of supernatant was determined in 200 µl of 12.5 mM Tricine (pH 7.8), 5 mM MgSO4, 0.5 mM dithiotreitol, 0.5 mM ATP, 0.5 mM luciferin
(Sigma), and 0.2 mg/ml bovine serum albumin in a
Berthold Lumat LB 9501 Luminometer (Wildbad, Germany).
In Situ Hybridization
Freshly isolated tissues and embryos
were fixed and embedded as described (31). Serial sections of 7-µm
thickness were probed for the presence of CAT, CPS, luciferase,
glutamine synthetase (GS) and phosphoenolpyruvate
carboxykinase (PEPCK) mRNAs by in situ hybridization
with the respective 35S-labeled cRNAs as described (32)
with modifications (33). The CAT probe, a 1065-bp fragment
(Ksp632I/HindIII) of pCT1 and encoding the CAT
gene, was subcloned into pBluescript. Double-labeled ([35S]UTP and [35S]CTP) cRNA was
transcribed from this fragment after linearization with
Asp718. The CPS probe was a [35S]UTP-labeled
cRNA, transcribed from the 564-bp BamHI/SmaI
fragment of the rat CPS I cDNA (12) in pBluescript after
linearization with BamHI. The luciferase probe was a
[35S]UTP-labeled cRNA transcribed from the
luc+ gene in pSPluc+ (Promega) after linearization with
HindIII. The GS probe was [35S]UTP-labeled
cRNA transcribed from the 700-bp 5 -EcoRI fragment of the
mouse cDNA in pGEM (34) after linearization with PvuII. The PEPCK probe was a [35S]UTP-labeled cRNA transcribed
from pPCK 10 (35) after linearization with Asp718. The
hybridization was followed by exposure to autoradiographic emulsion
(Ilford Nuclear Research Emulsion G-5 (Cheshire, UK)) for 6 days and
development for 8 min.
General Methods
Chromosomal DNA isolation, Southern blot
analysis, PCR, subcloning, restriction analysis, RNA isolation, and
Northern blot analysis were performed as described (36). For
quantitation of total RNA, glycogen and/or residual DNA was removed by
precipitation in 2 M LiCl (16 h, 4 °C). Quantitative
Northern blot analysis was performed using a Phosphor Imager (Molecular
Dynamics, Sunnyvale, CA).
RESULTS
Transgenic Lines and Organ-specific Expression of the Reporter
Gene
To determine the function of the promoter and upstream
region in vivo, "CPSK" and "CPSL" mice were
generated (Fig. 1). Ten CPSK founder mice and five CPSL
founder mice were available. No CAT activity was detected in the livers
(<0.05 milliunit/mg) of the CPSK founder mice.
One line, CPSL line 1 (CPSL1), yielded high levels of CAT activity in
the liver (6384 ± 762 milliunits in homozygous animals), less
activity in the small intestine (5.0 ± 0.6 milliunits in homozygous animals), and no activity in spleen, kidney, or colon. The
copy number of constructs integrated in the diploid genome of
homozygotes was 28. Four other CPSL lines (lines 2-5) showed no
activity in the organs tested, except for CPSL line 2, which showed a
relatively strong CAT activity of 309 ± 57 milliunits/mg protein
in the small intestine. At least 30 copies per diploid genome were
estimated to have become integrated in this line. Southern blot
analysis revealed that no rearrangements or deletions occurred in the
transgenic DNA of line 2 (not shown). In situ hybridization
of the liver of line 3 showed a very weak, periportally localized
expression of CAT mRNA (not shown).
Northern blot analysis of liver and small intestine of CPSL1 showed
that both CPS and CAT mRNA are present in the liver, and at about
10% of the hepatic level in the intestine (Fig. 2 and see Fig. 5). This means that the large difference in CAT activity between liver and intestine (more than 1000-fold) is only partly due to
the difference in steady-state mRNA levels and also results from
differences in post-transcriptional regulation. The major CAT mRNA
products formed had the expected size of 1.6 kbp. Neither hetero- nor
homozygous mice showed any signs of aberrant phenotype, indicating that
no DNA integration in essential genomic regions, including the CPS gene
itself, occurred. No deletions or rearrangements of the integrated DNA
were observed by Southern blot analysis.
Fig. 2.
CPS and CAT mRNA content of liver and
intestine of CPSL1. Total RNA from liver and intestine of
homozygous CPSL1 mice was isolated and analyzed by Northern blot
analysis with CPS (upper panel) and CAT (lower
panel) probes. In each lane, 20 µg of total RNA was applied.
Lane 1, liver RNA from a negative mouse; lane 2,
intestinal RNA from a CPSL1 mouse; lane 3, liver RNA from a CPSL1 mouse; lane 4, spleen RNA from rat; lane 5,
intestinal RNA from rat; and lane 6, liver RNA from
rat.
[View Larger Version of this Image (67K GIF file)]
Fig. 5.
Northern blot analysis of CPS and CAT
mRNA levels in the liver and small intestine of CPSL1 mice after
hormone treatment. Total RNA from liver and intestine of
diabetic/dexamethasone-treated homozygous mice of the CPSL1 line and of
control mice of the CPSL1 line was isolated and analyzed by Northern
blot analysis with the CPS and CAT probes as indicated. Each bar
represents four treated animals (hatched bars), compared to
four control animals (black bars) which were set at 100%.
For both CPS and CAT mRNA concentrations, only 10% of the hepatic
level was found in intestine. Error bars, S.E.
[View Larger Version of this Image (21K GIF file)]
Localization of Reporter mRNA in Liver and Small
Intestine
To gain further insight into the role of the
5 -regulatory region of the CPS gene with respect to its characteristic
intrahepatic pattern of expression, the localization of the CAT
mRNA in homozygous mice of the CPSL1 line was visualized by
in situ hybridization. As shown in Fig. 3,
A-C, the distribution of CAT mRNA was identical to the
expression pattern of CPS: It was only found in the periportal region
of the liver and absent in the GS-positive hepatocytes surrounding the
central veins.
Fig. 3.
A-C, distribution of CPS, CAT, and GS
mRNA in the liver of an adult CPSL1 mouse. Expression of CPS
(A), CAT (B), and GS (C) mRNA in
serial liver sections of adult homozygous CPSL1 mice as determined by
in situ hybridization. CPS and CAT are expressed in
hepatocytes in a large periportal region, whereas GS is expressed in
the small layer of hepatocytes surrounding the central venules. p, portal tract; c, central venule.
D-F, distribution of CPS, CAT, and GS mRNA in the liver
of a fasted and hormone-treated adult CPSL1 mouse. Expression of CPS
(D), CAT (E), and GS (F) mRNA in
serial liver sections of a homozygous adult CPSL1 mouse as determined
by in situ hybridization. The gradient in the expression of
CPS and CAT is reversed as a result of dexamethasone treatment of the
48-h starved mouse. CPS and CAT are expressed in a large periportal
area, with the highest cellular concentration seen in the region
(arrow) bordering the small GS-positive layer of hepatocytes surrounding the central venules. p, portal
tract; c, central venule. Magnification, × 50.
[View Larger Version of this Image (211K GIF file)]
In situ hybridizations of the small intestine of CPSL1
showed that the CAT and CPS mRNA were both expressed mainly in the crypts of the intestinal epithelium (Fig. 4). A similar
expression pattern of CAT and CPS mRNA in the intestine was
observed in CPSL line 2 (not shown). PEPCK mRNA, as a control, was
only accumulated in the upper half of the villus.
Fig. 4.
Distribution of CPS, CAT, and PEPCK mRNA
in small intestine of an adult CPSL1 mouse. Expression of CPS
(A), CAT (B), and PEPCK (C) mRNA
in serial sections of the jejunum of adult homozygous CPSL1 mice as
determined by in situ hybridization. CPS and CAT mRNA
are expressed in the enterocytes of the crypts. PEPCK mRNA is
mostly expressed in the upper portion of the villi. c,
crypt; v, villus; lu, lumen; s,
submucosa. Magnification, × 50.
[View Larger Version of this Image (92K GIF file)]
Hormone Responsiveness of Reporter mRNA
Expression
Administration of glucocorticosteroids (dexamethasone)
to starved rats not only induced CPS mRNA, but also reversed its
lobular portocentral gradient in expression (13). Under this condition, the layer of GS-positive cells around the central veins did express CPS. To investigate the role of the 5 -upstream region in hormone responsiveness, starved mice were treated with dexamethasone. In
situ hybridization showed that both CPS and CAT mRNA
concentrations were highest adjacent to the GS-positive hepatocytes
surrounding the central veins (Fig. 3, D-F), that is, the
mRNA gradient of both CAT and CPS was reversed compared to the
control condition (Fig. 3A). In contrast to the expression
pattern in rat liver, neither CPS nor CAT mRNA were present in the
GS-positive hepatocytes.
To gain a more quantitative insight into the hormone response, mRNA
concentrations in the liver of homozygous dexamethasone-treated diabetic mice of the CPSL1 line were compared to those in control mice
by Northern blot analysis. CPS gene expression in rats was shown to be
stimulated under these conditions in the liver, but not in the
intestine (11). Fig. 5 shows that both CPS and CAT mRNA levels were increased 3-4-fold in liver when compared to controls, whereas the levels in the intestine were decreased. This
analysis shows that the hormone responsiveness of the CAT reporter gene
is identical to that of the CPS gene in both liver and intestine.
Expression of the Reporter Gene during Development
In rat,
CPS mRNA can be detected in liver from ED15 onward, and in
intestine from ED13 onward. To investigate whether the 5 -upstream
region of the CPS gene determines the developmental onset of CPS
expression, homozygous ED14 embryos of CPSL1 were investigated.
In situ hybridizations clearly showed that both CPS and CAT
mRNA were expressed more abundantly in the small intestine than in
liver at this stage of development (Fig. 6). In liver, the CPS probe caused a relatively weak signal when compared to the CAT
probe. GS, as a control, was negative in intestine but positive in
liver (37, 38). In situ hybridization of whole body slices
of neonates (0 neonatal days; ND0) further showed that the distribution
of the expression of CAT mRNA was restricted to the liver and the
enterocytes of the small intestine, that is, similar to the pattern of
CPS mRNA (Fig. 7). The CAT signal in the liver had,
however, become weak when compared to the signal of CPS.
Fig. 6.
Distribution of CPS, CAT, and GS expression
in 14-day embryos of CPSL1 mice. Expression of CPS (A),
CAT (B), and GS (C) in serial sections of
homozygous ED14 embryos of the CPSL1 line as determined by in
situ hybridization. CPS is expressed in the mucosa of the small
intestine, but is barely detectable in liver, while CAT is expressed in
the mucosa of the small intestine and in the liver. GS expression is
just detectable in liver, and absent in intestine. li,
liver; m, mucosa of small intestine; s,
submucosa. Magnification, × 50.
[View Larger Version of this Image (69K GIF file)]
Fig. 7.
Distribution of CPS, CAT, and GS expression
in neonates (ND0) of CPSL1 mice. Expression of CPS (A),
CAT (B), and GS (C) mRNA in serial sections
of homozygous ND0 animals of the CPSL1 line as determined by in
situ hybridization. CPS is highly expressed in liver and in the
epithelial cells of the intestinal mucosa, while CAT is expressed
strongly in the intestinal mucosa but to a lesser extent in the liver.
At this stage of development, CPS and CAT mRNA are still expressed
in all hepatocytes of the liver (compare with Fig. 3A). GS
expression is expressed in liver, but absent in intestine.
li, liver; i, intestine; k, kidney;
c, colon. Magnification, × 50.
[View Larger Version of this Image (93K GIF file)]
To compare the developmental changes in CPS and CAT gene expression in
the liver and intestine more quantitatively, Northern blot analysis was
performed using total RNA of livers and intestines of homozygous
transgenics ranging in age from 4 days before birth (ED15) to 2 months
after birth. The developmental changes in hepatic CPS mRNA
concentrations were found to be similar to those of the CAT reporter
gene (Fig. 8A). For both mRNAs, upsurges
in concentration were found perinatally and just before weaning. The
difference in mRNA levels at ND0, also seen in the in
situ hybridization (Fig. 7), and in the preweaning period,
probably reflects the difference in half-life of both messengers. CPS
mRNA is relatively stable with a half-life of 6-12 h (39), whereas
CAT mRNA is thought to be less stable (40). In contrast to the
liver, the relative CPS mRNA levels in intestine decreased linearly
with time, without any fluctuations (Fig. 8B). The CAT
mRNA levels showed a similar pattern, except that its concentration
was low compared to that of CPS mRNA in the perinatal period. This
small discrepancy was also observed in liver.
Fig. 8.
Northern blot analysis of CPS and CAT
mRNA levels in the liver and small intestine of CPSL1 mice during
development. Total RNA of liver and intestine of homozygous CPSL1
mice was isolated and analyzed by Northern blot analysis with CPS
(closed circles, solid line) and CAT (open
squares, dashed line) probes. In each lane, 20 µg of
RNA was applied. The age in days, from ED15 to adult, is given on the
horizontal axis. Vertical solid lines, day of
birth. Each time point represents two to four animals. Bars,
range or S.E. A, CPS and CAT mRNA levels in liver,
relative to the levels at 26 days (100%); B, CPS and CAT
mRNA levels in intestine, relative to the levels at 26 days
(100%).
[View Larger Version of this Image (15K GIF file)]
The Far Upstream Enhancer in Vivo
Within the 12-kbp upstream
region, present in the CPSL construct, a single region of 469 bp showed
hepatocyte-specific and hormone-dependent enhancer activity
in transient transfections (20, 25, 26). To test the activity of this
469-bp enhancer fragment in vivo, construct CPSE (Fig. 1)
was used to generate transgenics. Eight lines were tested for
organ-specific luciferase reporter-gene activity (Table
I). Five lines showed liver-specific luciferase
activity, and three lines showed no activity in the organs tested. No
relationship was found between the luciferase expression levels and the
copy numbers of inserts integrated in the genome (Table I). Lines 4 and
5 showed a strong activity in the liver, while a weak activity (<1%)
was found in other organs (Fig. 9). Northern blot
analysis revealed presence of luciferase reporter mRNA of the
expected size (2.5 kbp). In situ hybridization of serial
sections of the liver of CPSE line 5 showed that the luciferase and CPS
mRNA were both localized in the periportal region, and not in the
pericentral region where GS is expressed (Fig. 10).
Luciferase mRNA in liver sections of line 4 was also localized in
the periportal region (not shown), although the signal was close to the
background level. Therefore the 469-bp enhancer, in combination with
the minimized promoter, has the capacity to activate the reporter gene
in the periportally localized hepatocytes.
Fig. 9.
The luciferase gene when driven by the far
upstream enhancer is specifically expressed in liver. The
luciferase activity in organs of CPSE mice lines 4 and 5 is
predominantly present in the liver, while only low activity can be
detected in any other organ tested. Black bars, activity of
line 4; hatched bars, activity of line 5. The luciferase
activity in organs (10 3 relative light units/mg of
protein) is depicted on the vertical axis. The abbreviations
for the organs on the horizontal axis are: Li,
liver; Int, small intestine; Ki, kidney;
Sp, spleen; Sto, stomach; Co, colon;
Ht, heart; Lu, lungs; Br, brains;
Tes, testis.
[View Larger Version of this Image (16K GIF file)]
Fig. 10.
Distribution of CPS, luciferase, and GS
mRNA in the liver of an adult CPSE mouse. Expression of CPS
(A), luciferase (B), and GS (C)
mRNA in serial liver sections of an adult heterozygous CPSE mouse
of line 5 as determined by in situ hybridization.
Luciferase mRNA is expressed in hepatocytes in periportal
regions which are connected to each other. No mRNA is detectable in
the layer of hepatocytes surrounding the central venules which do
express GS mRNA. p, portal tract; c, central
venule. Magnification, × 50.
[View Larger Version of this Image (81K GIF file)]
Intracellular Localization of the Reporter mRNA
Although
the hepatic expression pattern of CPS and CAT mRNA in CPSL1 and the
CPS and luciferase mRNA in CPSE lines 4 and 5 were identical, their
intracellular localization differed. CAT and luciferase mRNA was
seen mainly inside the nuclei, whereas CPS was found, as expected, in
the cytosol. Other transgenics, in which the CAT/SV40 reporter gene is
driven by the GS promoter/enhancer (31) or in which a rat GS/SV40
hybrid gene is driven by the PEPCK
promoter/enhancer2 showed a similar
subcellular distribution. This observation might therefore result from
the use of the SV40 small t intron in the reporter gene transcript.
Reverse transcriptase-PCR analysis of total RNA obtained from
transiently transfected hepatoma cells expressing the same reporter
gene construct showed that the major product is the unspliced
transcript and, therefore, probably retained in the nucleus (Fig.
11). A poor splicing efficiency, therefore, appears to
explain why the major part of the CAT mRNA in CPSL1 and CPSE line 4 and 5 mice was seen in the nucleus.
Fig. 11.
Reverse transcriptase-PCR analysis of total
mRNA of FTO2B hepatoma cells transiently transfected with a
reporter gene construct containing the SV40 small-t intron and poly(A)
signal. FTO2B hepatoma cells were transfected with an expression
plasmid encoding the luciferase reporter gene in conjunction with the
SV40 sequences that were used for the generation of transgenics.
Primers flank the small-t intron, to visualize both spliced
(mRNA) and unspliced RNA (uns. RNA).
LR, total rat liver RNA; F, total RNA from FTO-2B cells; RT, PCR amplification without reverse
transcriptase.
[View Larger Version of this Image (26K GIF file)]
DISCUSSION
The Promoter Region of the CPS Gene Is Not Sufficient to Drive Gene
Expression in Vivo
Transient transfections in hepatoma cells and
fibroblasts already showed the promoter to be active, but not able to
confer tissue specificity (25). Reporter gene expression in transgenics harboring the promoter region ( 1.8 kbp to 138 bp; CPSK) was hardly detectable and did not correspond to the organ distribution of CPS
expression. Similar negative results were obtained with transgenics in
which the proximal promoter of the glutamine synthetase gene drove
reporter gene expression (31). Addition of upstream sequences, including the far upstream enhancer, resulted in high levels of reporter-gene expression. This shows that the proximal promoter alone
is not sufficient to drive gene expression in vivo.
Possibly, higher order structures in the chromosomal DNA, like
nucleosomes, result in promoters that depend on enhancers for their
activation (41, 42).
The Upstream Region of the CPS Gene Determines the Spatiotemporal
Pattern of Expression in Liver and Intestine
The function of the
upstream region ( 12 kbp to 138 bp) was established by comparing
endogenous CPS expression to reporter gene expression in homozygous
mice of CPSL1. Four criteria, namely organ specificity, topography of
expression within the liver and intestine, hormone responsiveness, and
developmental appearance, were met, showing that the major determinants
of the regulation of CPS gene expression reside within 12 kbp of the
upstream region of the gene. Both the hormone responsiveness and the
developmental changes in CPS gene expression differ between liver and
intestine (Figs. 5 and 8). In liver, CPS mRNA levels respond to the
developmental and adaptive changes in circulating glucocorticosteroids
and intracellular cyclic AMP concentrations, whereas little response is
seen in the intestine. The linear postnatal decrease in intestinal CPS (and CAT) mRNA during development (Fig. 8B) correlates
with the concomitant retreat of these mRNAs from the villus to the
crypts.3 Since total small-intestine
homogenates were used in this assay, fewer CPS mRNA expressing
enterocytes will be present in assays of older animals.
Enhancer activity in the 12-kbp region has been reported in two
independent studies (20, 26), both establishing the existence of only a
single enhancer in this region. Even though the sequence of the
enhancer in both studies is identical, its location is not: we have
positioned the enhancer at 6.3 kbp, whereas Goping et al.
(26) mapped it at 10 kbp. Southern blot analysis of rat genomic DNA
digested with HpaII and BamHI showed
unequivocally that the uniquely demethylated HpaII site in
hepatic genomic DNA that characterizes the 469-bp enhancer (25, 43) is
positioned at 6.3 kbp. In this analysis the
EcoRI/BamHI fragment from the 4.6-kbp
EcoRI fragment containing the first exon was used as probe. The erroneous mapping of the enhancer at 10 kbp by Goping et al. (26) probably arose as a result of an inversion of the
HindIII fragment between 5 and 11.4 kbp.
The Far Upstream Enhancer Fails to Activate Gene Expression in the
Intestine
Analysis of the CPSE transgenics showed that the 469-bp
enhancer element determines liver specificity, but fails to drive intestinal expression. This finding is in line with the known difference in regulation of CPS expression in liver and intestine during development and hormonal treatment (Figs. 5 and 8). As a
consequence, separate elements should exist within the 12-kbp upstream
region that are responsible for liver-specific and intestine-specific expression. The use of distinct regulatory units to regulate expression in different tissues is also seen in other genes. The promoter and
proximal upstream region of the ornithine transcarbamoylase gene is
sufficient to drive expression in the small intestine, while addition
of the far upstream enhancer is necessary for liver-specific expression
(44). The hormone-responsive hepatocyte-specific region of the PEPCK
gene is located between 457 and 69 bp relative to the
transcription-initiation site, whereas the adipocyte-specific region is
found between 2086 to 888 bp (45; and references therein). The
putative intestine-specific element in the upstream region of the CPS
gene was not identified in the transient-transfection studies, because
most tests were done in hepatocytes, hepatoma cells, and fibroblasts
(20, 25, 26). One possible location might be at 4.0 kbp upstream of the
transcription start, where a HpaII site is found that is
demethylated in intestine only (20). However, this region showed no
enhancer activity in transient transfections to the enterocyte-like
Caco-2 cells (25). The exact location of the intestine-specific
enhancers therefore remains uncertain.
The Mechanism Underlying Liver-specific Periportal Expression of
the CPS Gene
Transient transfection assays showed that the
enhancer is responsible for the hormone-dependent
hepatocyte-specific expression of the CPS gene (25). A functional CRE
and a functional unit of GREs were identified in this region, as well
as sites which show strong similarity with the consensus hepatocyte
nuclear factor-3 (HNF-3) binding sites (46) in close proximity to the
GREs, and a site similar to a HNF-4 binding site, which is relatively
close to the CRE (25). The 469-bp CPS far upstream enhancer combined with the minimized promoter drives reporter-gene expression selectively in the periportal region of the liver. However, the relative
contribution of the hormone-mediated signal transduction pathways and
of the liver-enriched transcription factor-dependent
cascade in determining the periportally localized expression remains to
be established.
CPS belongs to a set of liver-specific genes, including the other
urea-cycle genes, many gluconeogenetic genes (e.g. PEPCK) and amino acid-catabolizing enzymes (e.g. tyrosine
aminotransferase), which are expressed selectively in the periportal
region of the liver and which are activated by cyclic AMP and
glucocorticosteroids (reviewed in Refs. 2, 3, and 47). Both
glucocorticosteroid levels and the ratio of glucagon over insulin
decrease along the portocentral axis of the liver lobule (47), and
might therefore be involved in establishing the portocentral gradient
in gene expression. However, the pericentral enzyme ornithine
aminotransferase (48) responds to glucocorticoids and glucagon in a
similar way as periportal amino acid-metabolizing enzymes (47, 49).
Furthermore, the glucagon receptor is preferentially expressed in the
pericentral region (50). Finally, the regulatory DNA regions of the
periportally expressed urea-cycle enzyme ornithine transcarbamoylase
gene (51) that are responsible for liver-specific expression, do not
contain hormone-responsive elements (44). Therefore, glucagon (via
cyclic AMP) and glucocorticosteroids alone are not sufficient to
explain selective periportal expression. In addition to the
hormone-responsive elements, the activation of the CPS gene, but also
the PEPCK (52, 53), the tyrosine aminotransferase (54, 55), and the
ornithine-transcarbamoylase gene (44), is mediated by liver-enriched
transcription factors (for reviews, see Refs. 56, 57, 58). However,
transcription factors HNF-3 and C/EBP have been reported to
accumulate only at slightly higher levels in the periportal region,
while HNF-1 and D-binding protein are distributed evenly throughout
the liver, and HNF-4 and C/EBP are expressed preferentially in the
pericentral region (59, 60). The contribution of these factors to the development of portocentral gradients in gene expression will therefore
be small at most. Unless new factors are involved, the observed
portocentral gradients in gene expression must arise from interactions
between the factors discussed. Fig. 12 presents such a
still hypothetical model for the hormone-dependent
hepatocyte-specific periportal expression of the CPS gene that is based
on the presently available information. Hormone-activated factors, like
phosphorylated CRE-binding protein (61, 62) and ligand-bound
glucocorticosteroid receptor (63) are available in the periportally
localized hepatocytes. Glucocorticosteroid activation leads to
recruitment of HNF-3 to its site (46, 55, 64). The transduction of
cyclic AMP-dependent liver-specific activation depends on
CRE, possibly in synergism with the HNF-4 site (55). This results in
the formation of an activation complex at the far upstream enhancer.
The complex will interact with the putative GAG element-binding protein
(25, 26) and with transcription factor IIB (65) via the CREB-binding protein (65, 66), leading to initiation of transcription (Ref. 67 and
references therein). A region in between the enhancer and the promoter
shows affinity for the nuclear matrix in different assays (20). This
matrix-attachment region is not present in the CPSE construct, and is
therefore not essential for activation. Its position in the CPS gene,
midway between the enhancer and the promoter (20) might even facilitate
loop formation by functioning as a hinge.
Fig. 12.
Schematic model for the activation of
hormone-dependent hepatocyte-specific activation of the CPS
gene. A, in the presence of hormones (cyclic AMP and
glucocorticosteroid), activated transcription factors CREB
(hatched) and the glucocorticosteroid receptor
(gray) will contribute, in synergism with liver-enriched
factors HNF-3 and HNF-4 (46, 55), to an activation complex.
B, the complex (hatched) interacts with the
promoter region through the putative GAG element-binding protein
(black) (25, 26) and through the CREB-binding protein
(CBP) (65, 66) and TFIIB (65). A DNA region, which showed a
high affinity for the nuclear matrix (matrix-attachment region,
MAR) is located midway between both regulatory regions (20),
apparently causes no sterical hindrance, and may even function as a
hinge.
[View Larger Version of this Image (21K GIF file)]
In summary, this report establishes that the 12-kbp upstream region of
the CPS gene is essential in the organ specificity of its expression,
the pattern of its expression within the liver, and the hormonal and
developmental regulation of its expression. Within this upstream region
the 469-bp enhancer determines the hepatocyte-specific expression and
periportal localization within the liver.
FOOTNOTES
*
The costs of publication of this
article were defrayed in part by the
payment of page charges. The article
must therefore be hereby marked
"advertisement" in
accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
To whom correspondence should be addressed. Tel.:
31-20-5664927; Fax: 31-20-6976177.
1
The abbreviations used are: CPS,
carbamoyl-phosphate synthetase; ED, embryonic day; nt, nucleotide(s);
CRE, cyclic AMP-responsive element; GRE, glucocorticosteroid-responsive
element; CAT, chloramphenicol acetyltransferase; GS, glutamine
synthetase; PEPCK, phosphoenolpyruvate carboxykinase; bp,
base pair(s); kbp, kilobase pair(s); Tricine, N-[2-hydroxy-1,1-bis(hydroxymethyl)ethyl]glycine; HNF,
hepatocyte nuclear factor; PCR, polymerase chain reaction.
2
M. A. Dingemanse, unpublished
observations.
3
Jonker, A., de Boer, P. A. J., van den Hoff, M. J. B., Lamers, W. H., and Moorman, A. F. M. (1996) J. Histochem.
Cytochem., in press.
Acknowledgments
We thank K. Westphal, J. Fiedler, M. W. van
Dooren, A. G. Geerdink, and J. A. M. Korfage for their contribution to
the data presented; D. V. M. Klappe-Banse, and G. J. de Fluiter for
taking care of the animals; and C. E. Gravemeijer and C. J. Hersbach for excellent photography.
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