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Volume 271, Number 50, Issue of December 13, 1996 pp. 31922-31928
©1996 by The American Society for Biochemistry and Molecular Biology, Inc.

A Discontinuous Eight-Amino Acid Epitope in Human Interleukin-3 Binds the alpha -Chain of Its Receptor*

(Received for publication, April 15, 1996, and in revised form, September 18, 1996)

Christopher J. Bagley , Julie Phillips , Bronwyn Cambareri , Mathew A. Vadas and Angel F. Lopez par

From the Division of Human Immunology, Hanson Centre for Cancer Research, Institute of Medical and Veterinary Science, Frome Road, Adelaide, South Australia 5001, Australia

ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
FOOTNOTES
Acknowledgments
REFERENCES


ABSTRACT

We have previously reported that, within the first helix of human interleukin (IL)-3, residues Asp21 and Glu22 are important for interaction with the alpha - and beta -chains of the IL-3 receptor, respectively. In order to define more precisely the sites of interaction with the receptor, we have performed molecular modeling of the helical core of IL-3 and single amino acid substitution mutagenesis of residues predicted to lie on the surfaces of the A, C, and D helices. The resulting analogues were characterized for their abilities to stimulate proliferation of TF-l cells and for binding to the high affinity (alpha - and beta -chain; IL-3Ralpha /Rbeta ) or low affinity (alpha -chain alone; IL-3Ralpha ) IL-3 receptor. We found that in addition to Asp21, residues Ser17, Asn18, and Thr25 within the A helix and Arg108, Phe113, Lys116, and Glu119 within the D helix of IL-3 were important for biological activity. Analysis of their binding characteristics revealed that these analogues were deficient in binding to both the IL-3Ralpha /Rbeta and the IL-3Ralpha forms of the receptor, consistent with a selective impairment of interaction with IL-3Ralpha . Molecular modeling suggests that these eight amino acid residues are adjacent in the tertiary structure, consistent with a discontinuous epitope interacting selectively with IL-3Ralpha . On the other hand, Glu22 of IL-3 was found to interact preferentially with the beta -chain with bulky and positively charged substitutions causing greater than 10,000-fold reduction in biological activity. These results show fundamental differences between IL-3 and granulocyte-macrophage colony-stimulating factor in the structural basis for recognition of their receptors that has implications for the construction of novel analogues and our understanding of receptor activation.


INTRODUCTION

Human interleukin (IL)1-3 is a glycoprotein of 133 amino acids produced principally by activated T-cells (1). IL-3 has a broad range of activities that includes regulation of proliferation of blood cell progenitors (1), adhesion of monocytes (2), and the respiratory burst of eosinophils (3). IL-3 has also been shown to support the growth of acute myeloid leukemia cells (4) and follicular B-cell lymphoma cells (5). More recently, IL-3 has been shown to activate endothelial cells (6), suggesting a direct involvement in leukocyte adhesion and transmigration to sites of inflammation. To understand the mechanism by which IL-3 carries out its pleiotropic functions it is essential to define the structural and functional basis of IL-3 interaction with its receptor.

IL-3 is a member of the hemopoietic cytokine family and is most closely related to granulocyte-macrophage colony-stimulating factor (GM-CSF) and IL-5 (7), two cytokines that both exhibit a bundle of four alpha -helices as their principal feature. Although the tertiary structure of IL-3 is not yet known, a preliminary report (8) suggests that it consists of a similar structure. Structure-function studies using site-directed mutagenesis have revealed that residues 21, 22, 27, 33, 43, 44, 48, 53, 58, 61, 64, 94, 101, 110, 111, 115, and 116 are important for activity (9, 10, 11, 12, 13), although several of these residues may be buried in the IL-3 structure. In addition, mouse-gibbon chimeras (14) and site-directed mutagenesis (15) of IL-3 identified two noncontiguous regions near the N and C termini that are required for biological activity.

The receptor for IL-3 has been shown to comprise an alpha -chain (IL-3Ralpha ) that binds IL-3 specifically and with low affinity and a beta -chain (Rbeta ) that does not detectably bind IL-3 by itself but which provides high affinity binding when coexpressed with the alpha -chain (16). The beta -chain also acts as the affinity-converting subunit of the GM-CSF (17) and IL-5 (18) receptors. The co-expression of both receptor chains is required for biological signaling (19), an event that involves IL-3 inducing a covalent as well as noncovalent association of IL-3Ralpha and Rbeta (20), phosphorylation of the beta -chain (21), and interaction with intracellular signaling molecules (22, 23). IL-3 analogues selectively deficient in interaction with either the alpha - or the beta -chain of the receptor have been shown to exhibit reduced biological potency (12). In order to be able to design more potent IL-3 agonists and antagonists, it is important to determine which parts of IL-3 are involved in binding each receptor chain.

We have previously shown that a double mutant, D101A/K116V, exhibited 10-fold enhanced biological activity with a commensurate increase in affinity for IL-3Ralpha (15). This suggested that the C-terminal region encompassing the fourth helix of IL-3 may play a role in binding to IL-3Ralpha . On the other hand, dissection of the IL-3 triple mutant (D21A/E22L/T25A) deficient in high affinity binding and function (12) revealed Asp21 also to be important for binding to the receptor alpha -chain, thus implicating the first helix of IL-3 in binding to IL-3Ralpha (12). In contrast, charge reversal substitution of residue Glu22 led to a molecule that was apparently deficient in association with the receptor beta -chain but was still biologically active, albeit at high concentrations. An acidic residue within the first helix has been recognized as a common motif probably important for function in several cytokines (24). Indeed, charge reversal substitution of the analogous residue (Glu21) in human GM-CSF not only causes selective loss of binding to Rbeta (25) but leads to the generation of a GM-CSF-specific antagonist (26). The observation of residual activity in IL-3:E22R (12) suggests that IL-3 possesses additional determinants for interaction with the Rbeta that may lie in helix A or, by analogy with growth hormone (27), in helix C. We wished to define those residues in IL-3 responsible for recognition of both the alpha - and the beta -chains of the receptor and characterize their contribution to biological function.

We show here that the recognition site for IL-3Ralpha is contained in an epitope consisting of at least eight residues distributed between the A and D helices of IL-3. Additionally, we find no residue other than Glu22 to be specifically involved in association with Rbeta . Furthermore, molecular modeling suggests that the helical core of IL-3 is packed similarly to that of GM-CSF but that, unlike GM-CSF, helix A is able to interact with both IL-3Ralpha and Rbeta , suggesting a different orientation of IL-3 with respect to the receptor chains.


EXPERIMENTAL PROCEDURES

Molecular Modeling of Human IL-3

A model of the helical core of IL-3 was developed based on the crystal structure coordinates of GM-CSF (28), and an additional helix was introduced between the A and B helices based on the preliminary nmr data of Feng and co-workers (8). The coordinates of GM-CSF were kindly provided by Dr. P. A. Karplus (Cornell University). Although clearly related to GM-CSF, IL-3 exhibits only 13% amino acid identity (26% similarity) overall (7). Secondary structure predictions of IL-3 and GM-CSF were performed using the GOR II algorithm (29) and compared with the known structure of GM-CSF. Sequences in predicted helical regions were aligned using a hydrophobicity matrix scoring method and manually adjusted where necessary according to the heptad repeat method (30). In regions predicted to be involved in the helical core of IL-3, the sequences exhibited 22% identity and 59% similarity with those of GM-CSF, permitting reliable alignment of these sequences (Fig. 1). An Indigo2 computer (Silicon Graphics) was used to run the molecular modeling programs Insight II, Homology, and Discover (Biosym Technologies Inc., San Diego, CA). Coordinates for regions of IL-3 thought to be conserved structurally, corresponding to the proposed helices, were assigned from the homologous backbone coordinates of GM-CSF and some side-chain coordinates. The C helix of IL-3 was predicted to differ from those of GM-CSF and IL-5, since GM-CSF contains a kink induced by Pro76 and the C helix of IL-5 is relatively long and bridges the two domains of the IL-5 dimer. The location of helix C of IL-3 was constrained, however, by the presence of Cys84, which forms a disulfide bond with Cys16 (31). Helix D was modeled to extend for an extra turn at the C terminus beyond that of GM-CSF, since there was continuance of the heptad pattern and no helix-breaking proline residue. An inspection of the model revealed a well packed hydrophobic core with only moderate steric clashes between the hydrophobic side chains of adjacent helices. Manual and automated methods were used to select appropriate conformations for the hydrophobic side chains of residues proposed to be buried in the core of the IL-3 molecule. Residues 42-50, which have been reported to constitute an additional helix (denoted A') (8) were manually placed in a helical conformation and docked against the face of the B and D helices, principally via the side chains of Leu48 and Met49 in order to be consistent with the reported nuclear Overhauser effect constraints (8). The model was evaluated for stereochemical parameters using Procheck (32). The sequences corresponding to the predicted four-helix bundle of IL-3 and their calculated exposure to the solvent, using the dssp program (33), are shown in Fig. 1.


Fig. 1. Sequence alignment of the proposed helices of IL-3. The sequences were aligned as described under "Experimental Procedures." Residues observed (GM-CSF and IL-5) or proposed (IL-3) to be within helices are indicated in capital letters with conserved residues boxed. Residues of less than 5% (bullet ) or between 5 and 20% (open circle ) solvent exposure for GM-CSF and IL-5 are indicated. Residues in IL-3 selected for mutation are shaded.
[View Larger Version of this Image (19K GIF file)]


Oligonucleotide-directed Mutagenesis

A synthetic human IL-3 cDNA (34) was subcloned by standard techniques into the HindIII/BamHI sites of pAlter (Promega Corporation, Sydney, New South Wales, Australia). Oligonucleotide-directed mutagenesis was carried out as described in the pAlter protocol using mutagenic oligonucleotides synthesized on a DNA synthesizer (Applied Biosystems Inc., Melbourne, Victoria, Australia). Mutants were subcloned using the polymerase chain reaction into the HindIII-BglII sites of the Escherichia coli secretion vector pFLAG (International Biotechnologies Inc., Sydney, New South Wales, Australia). The full-length cDNA insert was sequenced in full to confirm the presence of the desired mutation and the absence of other mutations. All IL-3 analogues also carried a substitution of Tyr in place of Phe at residue 133. This substitution had no effect on either biological or binding activities (data not shown).

Expression of IL-3

Wild type IL-3 and analogues were expressed in E. coli in order to enable production of highly purified material in a sufficient quantity for full titration in biological assay and low affinity binding experiments. Mutants of helix D and K28E were expressed in the pFLAG system and purified as described previously (12). Other analogues as well as wild type IL-3 were expressed using the pEC611 vector (35), and the resultant insoluble protein was recovered from E. coli by dissolution in 8 M urea containing 10 mM dithiothreitol and 25 mM Tris-Cl, pH 8.5. The proteins were purified by anion exchange chromatography on S-Sepharose (Pharmacia, North Ryde, New South Wales, Australia) in the presence of 8 M urea using 25 mM N-ethylmorpholine at a pH of 9.5 for wild type IL-3 and more acidic analogues and at pH 10.2 for analogues more basic than wild type. Protein was eluted by a series of washes with increasing concentrations of NaCl, with most analogues eluting at 75 mM NaCl. The peak fractions were identified by SDS-polyacrylamide gel electrophoresis and subjected to reversed phase high pressure liquid chromatography on either a 4.6 × 100-mm RP-300 column or a 10 × 100-mm C8 column (Aquapore, Applied Biosystems Inc., Melbourne, Victoria, Australia) using a gradient of acetonitrile in the presence of 0.1% trifluoroacetic acid. The peak fractions, as determined by SDS-polyacrylamide gel electrophoresis, were pooled and quantified. IL-3 produced by either method showed equivalent biological activity and receptor-binding properties (data not shown).

Purification and Quantitation of IL-3

Direct protein quantitation was performed by laser scanning densitometry using samples of purified protein resolved on Coomassie-stained 13% SDS-polyacrylamide gel electrophoresis (with an acrylamide:bisacrylamide ratio of 19:1) and compared with lysozyme standards using an LKB-Pharmacia Ultrascan XL system including GSXL software.

Stability of IL-3 Analogues

The stabilities of IL-3 expressed in the pFLAG system or intracellularly in E. coli were assessed by transverse urea gradient gel electrophoresis (36). Samples (20 µg) of purified IL-3 or analogue were electrophoresed toward the anode through 8% acrylamide gels (acrylamide:bisacrylamide ratio of 19:1) containing a linear 0-8 M urea gradient and the high pH buffer of Ref. 36. Stability was estimated as described (36).

Stimulation of Hemopoietic Cell Proliferation

This was measured by incorporation of [3H]thymidine into the human erythroleukemic cell line TF-1 (37) as described previously (3).

Radioreceptor Assays

IL-3 expressed in the pFLAG system and affinity-purified was radioiodinated to a specific activity of approximately 500 Ci/mmol by the ICl method (38). Direct competitive binding experiments were performed using CHO cells transfected permanently with either the IL-3Ralpha alone (39) or IL-3Ralpha and Rbeta . CHO cells expressing both IL-3Ralpha and Rbeta were obtained by retransfecting cells (25) that expressed IL-3Ralpha with a pRUFpuro-Rbeta retroviral expression plasmid that had been linearized with ScaI. Pools of cells were obtained after selection with puromycin (5 µg/ml) for 2 weeks and were demonstrated to express both chains of the receptor by flow cytometry. For low affinity binding measurements, 96-well multiwell dishes containing confluent monolayers of CHO cells transfected with IL-3Ralpha were incubated with 60 µl of a buffer (50 mM HEPES, 0.5% bovine serum albumin, pH 7.4) containing 125I-IL-3 (5 nM), IL-3 (5 nM), and various concentrations of IL-3 or analogues. After 2 h at 25 °C, the medium was aspirated, and the cells were briefly washed with phosphate-buffered saline. The cell-associated radioactivity was dissolved in 10 mM Tris, 150 mM NaCl containing 1% Nonidet P-40 and transferred to 3DT tubes, and radioactivity was determined using a Cobra gamma -counter (Packard, CT). For high affinity binding measurements, 96-well multiwell dishes containing confluent monolayers of CHO cells transfected with IL-3Ralpha and Rbeta were incubated with 60 µl of a HEPES/bovine serum albumin buffer containing 125I-IL-3 (0.3 nM) and various concentrations of IL-3 or analogues and processed as above. Although these cells expressed approximately 10-fold more IL-3Ralpha than Rbeta , the extreme low affinity of IL-3Ralpha means that 95% of specifically bound 125I-IL-3 is associated with the high affinity receptor.


RESULTS

Model of the Helical Core of IL-3

In order to facilitate targeting of mutations to exposed residues, we developed a model for the structure of IL-3. Although clearly related to GM-CSF and IL-5, IL-3 only exhibits significant sequence identity in regions corresponding to the helical cores of these cytokines (23% identity to GM-CSF and 17% to IL-5) with 50-60% similarity, permitting reliable alignment of the sequences only in these regions (Fig. 1). In particular, the high degree of conservation of hydrophobic residues in the putative helices A and D of IL-3 suggested that they pack against each other in a very similar manner to that of GM-CSF and IL-5. We predicted the core helical regions of IL-3 to consist of residues 14-29, 55-63, 72-82, and 104-119, in close agreement with the nmr data (8). The assignment of these helices was used as a framework for building a molecular model, which has allowed the likely surface exposure of amino acid residues to be assessed (Fig. 1). The residues of helices A, C, and D that were predicted to be exposed were then subjected to mutagenesis, and the resulting analogues were examined for biological activity and their receptor-binding properties.

Helix A of IL-3

We have demonstrated previously that, within the putative helix A of IL-3, residue Asp21 is important for association with the receptor alpha -chain and residue Glu22 is crucial for association with the receptor beta -chain (12). We have now sought to define further the contacts between helix A of IL-3 and its receptor by the mutation of additional residues Asn15, Ser17, Asn18, Met19, Thr25, His26, Lys28, and Gln29 that are predicted to lie on the surface of the molecule. We chose to introduce positively charged residues in place of hydrophilic residues, Ala for Met and His, and perform charge reversal at position Lys28. The analogues N15K, S17K, N18K, M19A, T25R, H26A, K28E, and Q29K were prepared from E. coli and tested for their abilities to stimulate the proliferation of TF-1 cells. The H26A, K28E, and Q29K analogues exhibited wild type levels of bioactivity, while the N15K and M19A analogues exhibited only 2-3-fold reduced biological potency (Fig. 2A). The S17K and T25R analogues were approximately 30-fold less potent than wild type IL-3 (Fig. 2A) and exhibited a similar reduction of potency of competition for both the high affinity IL-3 receptor (Fig. 2B) and for the alpha -chain of the receptor alone (Fig. 2C). This indicates that the residues Ser17 and Thr25 behave similarly to Asp21 (12) and are required for the selective interaction with the alpha -chain of the receptor. The N18K analogue was 60-fold less potent biologically than wild type IL-3 (Fig. 2A), exhibited a 250-fold reduction of potency of competition for the high affinity IL-3 receptor (Fig. 2B) and a 5-fold reduction of potency of competition for the alpha -chain of the receptor alone (Fig. 2C), suggesting that residue Asn18 may be involved in interactions with both chains of the receptor. These biological and receptor binding data are summarized in Table I. Since it was possible that the reduced binding of the S17K, N18K, and T25R analogues to the alpha -chain of the IL-3 receptor may result from a general structural perturbation, we examined their stabilities by transverse urea gradient electrophoresis. Each analogue was apparently fully folded in the absence of urea and exhibited a urea-induced transition from a fast migrating (folded) form to a more slowly migrating (unfolded) form. The estimated stability of these analogues was only slightly less than wild type IL-3 (Table I), consistent with normal folded structure. In addition, this systematic investigation of helix A shows that no residue in helix A other than Glu22 reported previously (12) interacts exclusively with Rbeta . Since the N18K analogue showed some apparent loss of interaction with Rbeta , we combined this mutation with the E22R mutation in order to further abrogate interaction with Rbeta . The resulting double mutant retained a small measure of biological activity (data not shown) and thus presumably a weak ability to interact productively with Rbeta .


Fig. 2. Characterization of helix A analogues. The indicated analogues were tested for their abilities to stimulate the proliferation of TF1 cells as described (A), compete for binding of 125I-IL-3 to high affinity (IL-3Ralpha /Rbeta ) receptors (B), or compete for binding of 125I-IL-3 to low affinity (IL-3Ralpha ) receptors (C) as described under "Experimental Procedures." Data are expressed as potency relative to IL-3 (100%) with values calculated from the ED50 values of IL-3 and analogues where potency = (ED50 (wild type)/ED50 (analogue)) × 100%. For each assay, error bars representing the S.E. for results from separate experiments are shown.
[View Larger Version of this Image (23K GIF file)]


Table I.

Relative activities of helix A analogues

The biological activity, receptor binding, and stability of analogues substituted in helix A are expressed relative to wild type IL-3 (100%). For the bioassay and receptor binding data, the values are calculated from the ED50 values of IL-3 and analogues, where potency = (ED50 (wild type)/ED50 (analogue)) × 100%. For stability data, the values are calculated from the estimated Delta G0 values of IL-3 and analogues, where relative stability = (Delta G (analogue)/Delta G (wild type)) × 100%. Assays were performed as described under "Experimental Procedures," and each value is the mean of the estimates from experiments performed at least twice.
Analogue Biological activitya High affinity bindingb Low affinity bindingc Relative stabilityd

%
N15K 41 38 NDe ND
S17K 2.4 3 8.9 80
N18K 1.6 0.40 11 70
M19A 26 31 19 ND
T25R 5.9 6.1 1.31 80
H26A 102 157 ND e ND
K28E 121 41 ND e ND
Q29K 88 ND ND e ND

a  Biological activity was measured using the TF-1 proliferation assay.
b  High affinity receptor binding was measured by competition for binding of 125I-IL-3 to high affinity (IL-3Ralpha /Rbeta ) receptors.
c  Low affinity receptor binding was measured by competition for binding of 125I-IL-3 to low affinity (IL-3Ralpha ) receptors.
d  Stability was measured by transverse urea gradient electrophoresis.
e  ND, not determined.

Since only residue Glu22 has been found to be significant for association with Rbeta and for bioactivity and its substitution by Arg leads to a dramatic loss of high affinity binding and biopotency (12), we chose to investigate a series of basic and/or bulky substituents at this position. Residues His, Arg, Lys, Phe, Trp, and Tyr were introduced in place of Glu22, and the proteins were expressed and purified as described under "Experimental Procedures." These analogues were tested for their abilities to stimulate the proliferation of TF-1 cells as shown in Fig. 3. All analogues exhibited weak biological activity with the following range of potencies (expressed as percentage of wild type): His (0.2%) > Lys approx  Tyr approx  Arg (0.005%) > Phe approx  Trp (<0.001%). The extremely low activity of the Phe and Trp analogues suggests that the introduction of bulky, hydrophobic groups is highly deleterious to interaction with Rbeta .


Fig. 3. Characterization of analogues substituted at position 22. A representative experiment is shown. IL-3 (open circle ) and analogues E22H (bullet ), E22R (square ), E22K (black-square), E22F (triangle ), E22W (black-triangle), and E22Y (diamond ) were tested for their abilities to stimulate the proliferation of TF1 cells as described under "Experimental Procedures." Standard error bars are indicated where they are sufficiently large with respect to the symbols.
[View Larger Version of this Image (24K GIF file)]


Helix C of IL-3

The presence of residual biological activity of the E22R analogue (12) and other position 22 analogues, as well as the failure to identify additional residues specifically involved in Rbeta binding within helix A of IL-3, suggests that additional determinants of IL-3 binding to Rbeta may be present elsewhere in the molecule. Helix C of growth hormone has been implicated in its binding to the second molecule of the growth hormone receptor, and several residues of IL-3 (Glu75 and Lys79) have been reported to be required for activity (40), suggesting that mutations within this region of IL-3 may lead to decreased interaction with Rbeta . Molecular modeling suggested that helix C extends from residue 72 to 82 and that the hydrophobic residues Ile74, Ile77, Leu78, and Leu81 may be buried and important for the structure of this helix (Fig. 1). We hypothesized that the introduction of charged residues or prolines at these positions would destabilize the IL-3 molecule. Conversely, we predict that the surface of helix C of IL-3 includes residues Ser72, Glu75, Ser76, Lys79, Asn80, and Leu82 and tested whether this may form an additional site for recognition of Rbeta . We produced the IL-3 analogues of residues predicted to be buried (A71E/K/P, I74R/P, and I77A) and of residues predicted to be exposed (S72K, E75K/A/Q, S76K, K79A/E, N80A, L82A/E/R, and P83L) and measured their abilities to stimulate the proliferation of TF-1 cells. These analogues demonstrated activities similar to wild type (Table II) with the exception the S72K, A71P, I77A, and I74R analogues, which were 8-, 9-, 15-, and 120-fold less potent than wild type IL-3, respectively. We then measured the stabilities of these four analogues as well as those of other analogues substituted at positions 71 and 74 and the L82E analogue by transverse urea gradient gel electrophoresis (Table II). The stabilities estimated differed widely, with the A71P/E, I74P, and I74R substitutions causing a 50-70% decrease in stability relative to wild type, consistent with major disruption of the normal IL-3 fold, whereas the A71R, S72K, and L82E analogues were of similar stability to wild type. The destabilizing effects of proline substitutions are consistent with residue 71 being in a type II beta -turn and residue 74 lying within the C-helix of IL-3 as suggested previously (40). Residue Ile74, but not Leu82, was also sensitive to the introduction of a charged residue, consistent with predictions of Ile74 being buried in the IL-3 structure and Leu82 being exposed. The reduced biological activity of the S72K was found not to be due to selective loss of binding to Rbeta , since this analogue was approximately 50-fold less potent than wild type IL-3 in both high and low affinity binding experiments (data not shown). It was possible that weak interactions of helix C residues with Rbeta was masked by the strong interaction mediated by Glu22. Analysis of the surface mutations of helix C in combination with the deleterious E22R mutation demonstrated no greater reduction in biological activity beyond that seen with the E22R mutation alone (data not shown). Thus, in IL-3, the region from residue 71 to 83 that encompasses helix C does not seem to play a direct role in biological function.

Table II.

Relative activities of helix C analogues

The biological activity and stability of analogues substituted in helix C are expressed relative to wild type IL-3 (100%) as described in Table I. Each value is the mean of the estimates from experiments performed at least twice.
Analogue Biological activity Relative stability

%
L68R 28 NDa
A71E 260 50
A71P 11 40
A71R 169 80
S72K 13 120
I74P 25 50
I74R 0.79 30
E75Q 180 ND a
E75K 155 ND a
S76K 295 ND a
I77A 6.7 ND a
K79A 204 ND a
K79Q 150 ND a
N80A 63 ND a
L82E 63 110
P83L 150 110

a  ND, not determined.

Helix D of IL-3

The D helix is proposed to extend from Trp104 to Glu119. In order to minimize disruption of the structure of IL-3, we chose to mutate only those residues predicted to lie on the surface of the D helix. Mutations were chosen to alter the chemical character of the residues; in particular, charged residues were replaced by amino acids of opposite charge, and the large hydrophobic residue, Phe113, was replaced by a small, aliphatic alanine residue. The mutations made were E106R, R108E, R109E, K110E, T112R, F113A, K116E, and E119R. The proteins were expressed in E. coli using the pFLAG system, purified by affinity chromatography, and tested for their abilities to stimulate the proliferation of TF-1 cells. As shown in Fig. 4a, a range of potencies was observed with analogues R108E, K110E, F113A, K116E, and E119R, showing activities reduced 5-15-fold compared with wild type. These analogues were then examined for their abilities to compete for binding to the high affinity (IL-3Ralpha /Rbeta ) or low affinity (IL-3Ralpha ) IL-3 receptors (except K110E, which expressed poorly). As shown in Fig. 4b, each of these analogues was less able than wild type to compete for binding to high affinity receptors, and the reduced potencies of these analogues were paralleled in binding to the IL-3Ralpha alone (Fig. 4c). The reduction in biological activity of these analogues apparently results from decreased association with the receptor, in particular the alpha -chain. These biological and receptor binding data are summarized in Table III. The stabilities of the least active analogues, R108E, F113A, K116E, and E119R, were tested by transverse urea gradient gel electrophoresis and found to be equivalent to wild type except for the R108E analogue, which showed a 40% reduction in stability (Table III). Thus, the reduced binding of these IL-3 analogues to the IL-3Ralpha probably results from the loss of receptor contacts rather than from general structural perturbation.


Fig. 4. Characterization of helix D analogues. Representative experiments for the indicated analogues are shown. IL-3 (open circle ) and analogues R108E (bullet ), R109E (square ), T112R (black-square), F113A (triangle ), K116E (black-triangle), and E119R (diamond ) were tested for their abilities to stimulate the proliferation of TF1 cells (a), compete for binding of 125I-IL-3 to high affinity (IL-3Ralpha /beta ) receptors (b), or compete for binding of 125I-IL-3 to low affinity (IL-3Ralpha ) receptors (c) as described under "Experimental Procedures." For the binding assays, data are expressed as a percentage of binding seen in the absence of competitor. Nonspecific binding has not been subtracted. Standard error bars are indicated where they are sufficiently large with respect to the symbols.
[View Larger Version of this Image (23K GIF file)]


Table III.

Relative activities of helix D analogues

The biological activity, receptor binding, and stability of analogues substituted in helix D are expressed relative to wild type IL-3 (100%) as described in Table I. Each value is the mean of the estimates from experiments performed at least twice.
Analogue Biological activity High affinity binding Low affinity binding Relative stability

%
E106R 228 29 NDa ND
R108E 18 9.5 18 60
R109E 156 203 ND a ND
K110E 14 40 ND a ND
T112R 47 196 417 ND
F113A 7.3 14 1.7 100
K116E 18 12 2.4 100
E119R 5.6 5.5 0.56 120

a  ND, not determined.


DISCUSSION

We used a prediction of the four-helix bundle core of the IL-3 molecule to help target our mutagenesis to surface residues that may be available for receptor contact. Previous studies have implicated residues near both the N and C termini of IL-3 as being required for binding to the alpha -chain of the IL-3 receptor. Using the combination of binding experiments on both the high affinity (IL-Ralpha /Rbeta ) and low affinity (IL-Ralpha ) receptors, we identified seven residues, Ser17, Asn18, and Thr25 within helix A and Arg108, Phe113, Lys116, and Glu119 within helix D of IL-3 that are important for binding to IL-3Ralpha . An additional residue in helix A, Asp21, has been shown previously to be important for binding to IL-3Ralpha (12). Although no single residue was found to be critical for binding to IL-3Ralpha , together these eight residues can fully account for the observed affinity of IL-3 for IL-3Ralpha , suggesting that the major part of the recognition site for IL-3Ralpha has been defined. Structurally, the juxtaposition of the A and D helices directs these eight residues to form a nearly continuous surface that is available for binding to IL-3Ralpha (Fig. 5). The apparent insensitivity to mutation of residue Thr112, which is predicted to lie in the middle of this patch, may be the result of our choice of an Arg residue as replacement, which may deputize for the nearby side chain of Arg108 in interacting with IL-3Ralpha . Olins et al. (13) report that the replacement of Thr112 by Glu or Tyr results in greater than 5-fold loss of biological activity. In addition to the identification of the probable surface residues Lys110 and Phe113 observed by other workers (9, 13), we found residues Lys116 and Glu119 to be important for biological function. Our results extend these observations by demonstrating that the surface of helix D is specifically involved in binding to IL-3Ralpha .


Fig. 5. The proposed face on IL-3 responsible for binding to IL-3Ralpha . The model of IL-3 is represented in diagram form, using Molscript (42) and Raster3d (43), viewed toward the face of the D and A helices. Residue alpha -carbon atoms and side chains are represented by Corey-Pauling-Koltun spheres shaded according to significance; residues for which a >5-fold effect was seen on mutagenesis are dark, while other mutated residues are light.
[View Larger Version of this Image (90K GIF file)]


The normal interaction of IL-3 with Rbeta requires the integrity of the conserved residue Glu22 but is not completely abrogated by charge reversal at this position (12). Growth hormone is known to employ helices A and C for binding to molecule 2 of its receptor. By analogy, we sought to locate additional IL-3 residues that interact with Rbeta by mutation of residues in the A and C helices that were predicted to lie close to Glu22 in the tertiary structure of IL-3. Within helix A of IL-3, we found Ser17, Asn18 and Thr25 to be additional determinants for interaction with IL-3Ralpha rather than with Rbeta , although Asn18 apparently interacts with both chains of the receptor. Substitution of residues predicted to lie on the surface of helix C revealed that they were not important for biological function, and when combined with the E22R substitution, there was no reduction in biological activity beyond that with the E22R substitution alone. Our observations with the E75K and K79E mutations differ from those of Dorssers and co-workers (40), who observed greater that 100-fold reduction in activity with their E75R and K79E analogues produced from inclusion bodies in E. coli. Our IL-3 E75K and K79E analogues were produced with N-terminal FlagTM peptides and purified using affinity chromatography and quantified by Coomassie staining of SDS-polyacrylamide gels, which may have helped to overcome any potential problems caused by the poor solubility of some IL-3 analogues produced in E. coli.

Glu22 is the only residue identified as required for association with Rbeta uniquely, as judged by the selective loss of high affinity binding (Table I). However, neither charge reversal nor introduction of bulky residues was able to completely abrogate biological activity. This contrasts with GM-CSF, in which replacement of the homologous Glu21 by Lys or Arg generated complete antagonists and the Phe and His substitutions led to weak partial agonism (26). Several observations suggest that Rbeta may interact more intimately with IL-3 than with GM-CSF. First, the degree of affinity conversion effected by Rbeta on the IL-3Ralpha is much greater than for the GM-CSF receptor alpha -chain (16, 41). Second, three individual mutations in the putative B-C loop of the membrane-proximal extracellular domain (domain 4) of Rbeta are able to eliminate the high affinity binding of GM-CSF, but they exhibit only modest effects on the binding of IL-3 (41). In addition to the pivotal role played by residue Glu22 of IL-3, the recognition of Rbeta by the IL-3·IL-3Ralpha complex may result from the combination of several weak Rbeta /IL-3 interactions, not detectable by our mutagenic strategy. Alternatively, Rbeta may directly recognize IL-3Ralpha itself, since the two receptor chains must be brought into very close proximity by their both binding to helix A of IL-3. Either of these possibilities suggests a fundamental difference between the structure of the IL-3 receptor complex and the closely related GM-CSF receptor complex that may be resolved ultimately by analyzing the interaction of ligands and receptors in solution or by x-ray crystallography.


FOOTNOTES

*   This work was supported by the National Health and Medical Research Council of Australia. The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
   A Rotary Peter Nelson Leukaemia Research Fellow of the Anti-Cancer Foundation of the Universities of South Australia.
par    To whom correspondence should be addressed. Tel.: 61-8-8222-3471; Fax: 61-8-8222-3538.
1    The abbreviations used are: IL, interleukin; IL-3Ralpha , IL-3 receptor alpha -chain; Rbeta , beta -chain; GM-CSF, granulocyte-macrophage colony-stimulating factor; CHO, Chinese hamster ovary.

Acknowledgments

We thank Dr. J. Woodcock for the provision of the CHO cells transfected with IL-3Ralpha or IL-3Ralpha /Rbeta .


REFERENCES

  1. Clark, S. C., and Kamen, R. (1987) Science 236, 1229-1237 [Abstract/Free Full Text]
  2. Elliott, M. J., Vadas, M. A., Cleland, L. G., Gamble, J. R., and Lopez, A. F. (1990) J. Immunol. 145, 167-176 [Abstract]
  3. Lopez, A. F., Dyson, P., To, L.-B., Elliot, M. J., Milton, S., Russel, J., Juttner, C., Yang, Y.-C., Clark, S. C., and Vadas, M. A. (1988) Blood 72, 1797-1804 [Abstract/Free Full Text]
  4. Gesner, T. G., Mufson, R. A., Norton, C. R., Turner, K. J., Yang, Y. C., and Clark, S. C. (1988) J. Cell. Physiol. 136, 493-499 [CrossRef][Medline] [Order article via Infotrieve]
  5. Clayberger, C., Luna-Fineman, S., Lee, J. E., Pillai, A., Campbell, M., Levy, R., and Krensky, A. M. (1992) J. Exp. Med. 175, 371-376 [Abstract/Free Full Text]
  6. Korpelainen, E. I., Gamble, J. R., Smith, W. B., Goodall, G. J., Qiyu, S., Woodcock, J. M., Dottore, M., Vadas, M. A., and Lopez, A. F. (1993) Proc. Natl. Acad. Sci. U. S. A. 90, 11137-11141 [Abstract/Free Full Text]
  7. Goodall, G. J., Bagley, C. J., Vadas, M. A., and Lopez, A. F. (1993) Growth Factors 8, 87-97 [Medline] [Order article via Infotrieve]
  8. Feng, Y., Klein, B. K., Vu, L., Aykent, S., and McWherter, C. A. (1995) Biochemistry 34, 6540-6551 [CrossRef][Medline] [Order article via Infotrieve]
  9. Lokker, N. A., Movva, N. R., Strittmatter, U., Fagg, B., and Zenke, G. (1991) J. Biol. Chem. 266, 10624-10631 [Abstract/Free Full Text]
  10. Lokker, N. A., Zenke, G., Strittmatter, U., Fagg, B., and Movva, N. R. (1991) EMBO J. 10, 2125-2131 [Medline] [Order article via Infotrieve]
  11. Lopez, A. F., Shannon, M. F., Hercus, T., Nicola, N. A., Cambareri, B., Dottore, M., Layton, M. J., Eglinton, L., and Vadas, M. A. (1992) EMBO J. 11, 909-916 [Medline] [Order article via Infotrieve]
  12. Barry, S. C., Bagley, C. J., Philips, J., Dottore, M., Cambareri, B., Moretti, P., D'Andrea, R., Goodall, G. J., Shannon, M. F., Vadas, M. A., and Lopez, A. F. (1994) J. Biol. Chem. 269, 8488-8492 [Abstract/Free Full Text]
  13. Olins, P. O., Bauer, S. C., Braford-Goldberg, S., Sterbenz, K., Polazzi, J. O., Caparon, M. H., Klein, B. K., Easton, A. M., Paik, K., Klover, J. A., Thiele, B. R., and McKearn, J. P. (1995) J. Biol. Chem. 270, 23754-23760 [Abstract/Free Full Text]
  14. Kaushansky, K., Shoemaker, S. G., Broudy, V. C., Lin, N. L., Matous, J. V., Alderman, E. M., Aghajanian, J. D., Szklut, P. J., VanDyke, R. E., Pearce, M. K., and Abrahams, J. S. (1992) J. Clin. Invest. 90, 1879-1888
  15. Lopez, A. F., Shannon, M. F., Barry, S., Phillips, J. A., Cambareri, B., Dottore, M., Simmons, P., and Vadas, M. A. (1992) Proc. Natl. Acad. Sci. U. S. A. 89, 11842-11846 [Abstract/Free Full Text]
  16. Kitamura, T., Sato, N., Arai, K., and Miyajima, A. (1991) Cell 66, 1165-1174 [CrossRef][Medline] [Order article via Infotrieve]
  17. Hayashida, K., Kitamura, T., Gorman, D. M., Arai, K., Yokota, T., and Miyajima, A. (1990) Proc. Natl. Acad. Sci. U. S. A. 87, 9655-9659 [Abstract/Free Full Text]
  18. Tavernier, J., Devos, R., Cornelis, S., Tuypens, T., Van der Heyden, J., Fiers, W., and Plaetinck, G. (1991) Cell 66, 1175-1184 [CrossRef][Medline] [Order article via Infotrieve]
  19. Kitamura, T., and Miyajima, A. (1992) Blood 80, 84-90 [Abstract/Free Full Text]
  20. Stomski, F. C., Sun, Q., Bagley, C. J., Woodcock, J. M., Goodall, G. J., Andrews, R. K., Berndt, M. C., and Lopez, A. F. (1996) Mol. Cell. Biol. 16, 3035-3046 [Abstract]
  21. Duronio, V., Clark-Lewis, I., Federsppiel, B., Wieler, J. S., and Schrader, J. W. (1992) J. Biol. Chem. 267, 21856-21863 [Abstract/Free Full Text]
  22. Silvennoinen, O., Witthuhn, B. A, Quelle, F. W., Cleveland, J. L., Yi, T., and Ihle, J. N. (1993) Proc. Natl. Acad. Sci. U. S. A. 90, 8429-8433 [Abstract/Free Full Text]
  23. Quelle, F. W., Sato, N., Witthuhn, B. A., Inhorn, R. C., Eder, M., Miyajima, A., Griffin, J. D., and Ihle, J. N. (1994) Mol. Cell. Biol. 14, 4335-4341 [Abstract/Free Full Text]
  24. Shanafelt, A. B., Miyajima, A., Kitamura, T., and Kastelein, R. A. (1991) EMBO J. 10, 4105-4112 [Medline] [Order article via Infotrieve]
  25. Hercus, T. H., Cambareri, B., Dottore, M., Woodcock, J. M., Bagley, C. J., Vadas, M. A., Shannon, M. F., and Lopez, A. F. (1994) Blood 83, 3500-3508 [Abstract/Free Full Text]
  26. Hercus, T. R., Bagley, C. J., Cambareri, B., Dottore, M., Woodcock, J. M., Vadas, M. A., Shannon, M. F., and Lopez, A. F. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, 5838-5842 [Abstract/Free Full Text]
  27. De Vos, A. M., Ultsch, M., and Kossiakoff, A. A. (1992) Science 255, 306-312 [Abstract/Free Full Text]
  28. Diederichs, K., Boone, T., and Karplus, P. A. (1991) Science 254, 1779-1782 [Abstract/Free Full Text]
  29. Garnier, J., and Robson, B. (1989) in Prediction of Protein Structure and the Principles of Protein Conformation (Fasman, G. D., ed), pp. 417-465, Plenum Publishing Corp., New York
  30. Parry, D. A. D., Minasian, E. L., and Leach, S. J. (1991) J. Mol. Recognit. 4, 63-75 [CrossRef][Medline] [Order article via Infotrieve]
  31. Clark-Lewis, I., Hood, L., and Kent, S. B. H. (1988) Proc. Natl. Acad. Sci. U. S. A. 85, 7897-7901 [Abstract/Free Full Text]
  32. Laskowski, R. A., MacArthur, M. W., Moss, D. S., and Thornton, J. M. (1993) J. Appl. Crystallogr. 26, 283-291 [CrossRef]
  33. Kabsch, W. S., and Sander, C. (1983) Biopolymers 22, 2577-2637 [CrossRef][Medline] [Order article via Infotrieve]
  34. Phillips, J. A., Lopez, A. F., Milton, S. E., and Shannon, M. F. (1990) Gene (Amst.) 84, 501-507 [CrossRef]
  35. Brumby, A. M. (1994) The Control of Prophage Induction in Coliphage 186, Ph.D. thesis, University of Adelaide
  36. Pace, C. N., Shirley, B. A., and Thomson, J. A. (1990) in Protein Structure: A Practical Approach (Creighton, T. E., ed), pp. 311-330, IRL Press, Oxford
  37. Kitamura, T., Tange, T., Terasawa, T., Chiba, S., Kuwaki, K., Miyagawa, K., Piao, Y.-F., Miyazano, K., Urabe, A., and Takaku, F. (1989) J. Cell. Physiol. 140, 323-334 [CrossRef][Medline] [Order article via Infotrieve]
  38. Contreras, M. A., Bale, W. F., and Spar, I. L. (1983) Methods Enzymol. 92, 277-292 [Medline] [Order article via Infotrieve]
  39. Sun, Q., Woodcock, J. M., Rapoport, A., Stomski, F. C., Korpelainen, E. I., Bagley, C. J., Goodall, G. J., Smith, W. B., Vadas, M. A., and Lopez, A. F. (1996) Blood 87, 83-92 [Abstract/Free Full Text]
  40. Dorssers, L. C. J., Moster, M. C., Burger, H., Janssen, C., Lemson, P. J., van Lambalgen, R., Wagemaker, G., and van Leen, R. W. (1991) J. Biol. Chem. 266, 21310-21317 [Abstract/Free Full Text]
  41. Woodcock, J. M., Zacharakis, B., Plaetinck, G., Bagley, C. J., Qiyu, S., Hercus, T. R., Tavernier, J., and Lopez, A. F. (1994) EMBO J. 13, 5176-5185 [Medline] [Order article via Infotrieve]
  42. Kraulis, P. (1991) J. Appl. Crystallogr. 24, 946-950 [CrossRef]
  43. Merritt, E. A., and Murphy, M. E. P. (1994) Acta Crystallogr. Sect. D 50, 869-873 [CrossRef][Medline] [Order article via Infotrieve]

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