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Volume 271, Number 50,
Issue of December 13, 1996
pp. 31922-31928
©1996 by The American Society for Biochemistry and Molecular Biology, Inc.
A Discontinuous Eight-Amino Acid Epitope in Human Interleukin-3
Binds the -Chain of Its Receptor*
(Received for publication, April 15, 1996, and in revised form, September 18, 1996)
Christopher J.
Bagley
¶,
Julie
Phillips
,
Bronwyn
Cambareri
,
Mathew
A.
Vadas
and
Angel F.
Lopez
From the Division of Human Immunology, Hanson Centre for Cancer
Research, Institute of Medical and Veterinary Science, Frome Road,
Adelaide, South Australia 5001, Australia
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
FOOTNOTES
Acknowledgments
REFERENCES
ABSTRACT
We have previously reported that, within the
first helix of human interleukin (IL)-3, residues Asp21 and
Glu22 are important for interaction with the - and
-chains of the IL-3 receptor, respectively. In order to define more
precisely the sites of interaction with the receptor, we have performed molecular modeling of the helical core of IL-3 and single amino acid
substitution mutagenesis of residues predicted to lie on the surfaces
of the A, C, and D helices. The resulting analogues were characterized
for their abilities to stimulate proliferation of TF-l cells and for
binding to the high affinity ( - and -chain; IL-3R /R ) or low
affinity ( -chain alone; IL-3R ) IL-3 receptor. We found that in
addition to Asp21, residues Ser17,
Asn18, and Thr25 within the A helix and
Arg108, Phe113, Lys116, and
Glu119 within the D helix of IL-3 were important for
biological activity. Analysis of their binding characteristics revealed
that these analogues were deficient in binding to both the
IL-3R /R and the IL-3R forms of the receptor, consistent with a
selective impairment of interaction with IL-3R . Molecular modeling
suggests that these eight amino acid residues are adjacent in the
tertiary structure, consistent with a discontinuous epitope interacting selectively with IL-3R . On the other hand, Glu22 of IL-3
was found to interact preferentially with the -chain with bulky and
positively charged substitutions causing greater than 10,000-fold
reduction in biological activity. These results show fundamental
differences between IL-3 and granulocyte-macrophage colony-stimulating
factor in the structural basis for recognition of their receptors that
has implications for the construction of novel analogues and our
understanding of receptor activation.
INTRODUCTION
Human interleukin (IL)1-3 is a
glycoprotein of 133 amino acids produced principally by activated
T-cells (1). IL-3 has a broad range of activities that includes
regulation of proliferation of blood cell progenitors (1), adhesion of
monocytes (2), and the respiratory burst of eosinophils (3). IL-3 has
also been shown to support the growth of acute myeloid leukemia cells (4) and follicular B-cell lymphoma cells (5). More recently, IL-3 has
been shown to activate endothelial cells (6), suggesting a direct
involvement in leukocyte adhesion and transmigration to sites of
inflammation. To understand the mechanism by which IL-3 carries out its
pleiotropic functions it is essential to define the structural and
functional basis of IL-3 interaction with its receptor.
IL-3 is a member of the hemopoietic cytokine family and is most closely
related to granulocyte-macrophage colony-stimulating factor (GM-CSF)
and IL-5 (7), two cytokines that both exhibit a bundle of four
-helices as their principal feature. Although the tertiary structure
of IL-3 is not yet known, a preliminary report (8) suggests that it
consists of a similar structure. Structure-function studies using
site-directed mutagenesis have revealed that residues 21, 22, 27, 33, 43, 44, 48, 53, 58, 61, 64, 94, 101, 110, 111, 115, and 116 are
important for activity (9, 10, 11, 12, 13), although several of these residues may
be buried in the IL-3 structure. In addition, mouse-gibbon chimeras
(14) and site-directed mutagenesis (15) of IL-3 identified two
noncontiguous regions near the N and C termini that are required for
biological activity.
The receptor for IL-3 has been shown to comprise an -chain
(IL-3R ) that binds IL-3 specifically and with low affinity and a
-chain (R ) that does not detectably bind IL-3 by itself but which
provides high affinity binding when coexpressed with the -chain
(16). The -chain also acts as the affinity-converting subunit of the
GM-CSF (17) and IL-5 (18) receptors. The co-expression of both receptor
chains is required for biological signaling (19), an event that
involves IL-3 inducing a covalent as well as noncovalent association of
IL-3R and R (20), phosphorylation of the -chain (21), and
interaction with intracellular signaling molecules (22, 23). IL-3
analogues selectively deficient in interaction with either the - or
the -chain of the receptor have been shown to exhibit reduced
biological potency (12). In order to be able to design more potent IL-3
agonists and antagonists, it is important to determine which parts of
IL-3 are involved in binding each receptor chain.
We have previously shown that a double mutant, D101A/K116V, exhibited
10-fold enhanced biological activity with a commensurate increase in
affinity for IL-3R (15). This suggested that the C-terminal region
encompassing the fourth helix of IL-3 may play a role in binding to
IL-3R . On the other hand, dissection of the IL-3 triple mutant
(D21A/E22L/T25A) deficient in high affinity binding and function (12)
revealed Asp21 also to be important for binding to the
receptor -chain, thus implicating the first helix of IL-3 in binding
to IL-3R (12). In contrast, charge reversal substitution of residue
Glu22 led to a molecule that was apparently deficient in
association with the receptor -chain but was still biologically
active, albeit at high concentrations. An acidic residue within the
first helix has been recognized as a common motif probably important
for function in several cytokines (24). Indeed, charge reversal
substitution of the analogous residue (Glu21) in human
GM-CSF not only causes selective loss of binding to R (25) but leads
to the generation of a GM-CSF-specific antagonist (26). The observation
of residual activity in IL-3:E22R (12) suggests that IL-3 possesses
additional determinants for interaction with the R that may lie in
helix A or, by analogy with growth hormone (27), in helix C. We wished
to define those residues in IL-3 responsible for recognition of both
the - and the -chains of the receptor and characterize their
contribution to biological function.
We show here that the recognition site for IL-3R is contained in an
epitope consisting of at least eight residues distributed between the A
and D helices of IL-3. Additionally, we find no residue other than
Glu22 to be specifically involved in association with R .
Furthermore, molecular modeling suggests that the helical core of IL-3
is packed similarly to that of GM-CSF but that, unlike GM-CSF, helix A
is able to interact with both IL-3R and R , suggesting a different orientation of IL-3 with respect to the receptor chains.
EXPERIMENTAL PROCEDURES
Molecular Modeling of Human IL-3
A model of the helical
core of IL-3 was developed based on the crystal structure coordinates
of GM-CSF (28), and an additional helix was introduced between the A
and B helices based on the preliminary nmr data of Feng and co-workers
(8). The coordinates of GM-CSF were kindly provided by Dr. P. A. Karplus (Cornell University). Although clearly related to GM-CSF, IL-3
exhibits only 13% amino acid identity (26% similarity) overall (7).
Secondary structure predictions of IL-3 and GM-CSF were performed using
the GOR II algorithm (29) and compared with the known structure of
GM-CSF. Sequences in predicted helical regions were aligned using a
hydrophobicity matrix scoring method and manually adjusted where
necessary according to the heptad repeat method (30). In regions
predicted to be involved in the helical core of IL-3, the sequences
exhibited 22% identity and 59% similarity with those of GM-CSF,
permitting reliable alignment of these sequences (Fig. 1). An
Indigo2 computer (Silicon Graphics) was used to run the
molecular modeling programs Insight II, Homology, and Discover (Biosym
Technologies Inc., San Diego, CA). Coordinates for regions of IL-3
thought to be conserved structurally, corresponding to the proposed
helices, were assigned from the homologous backbone coordinates of
GM-CSF and some side-chain coordinates. The C helix of IL-3 was
predicted to differ from those of GM-CSF and IL-5, since GM-CSF
contains a kink induced by Pro76 and the C helix of IL-5 is
relatively long and bridges the two domains of the IL-5 dimer. The
location of helix C of IL-3 was constrained, however, by the presence
of Cys84, which forms a disulfide bond with
Cys16 (31). Helix D was modeled to extend for an extra turn
at the C terminus beyond that of GM-CSF, since there was continuance of
the heptad pattern and no helix-breaking proline residue. An inspection
of the model revealed a well packed hydrophobic core with only moderate
steric clashes between the hydrophobic side chains of adjacent helices.
Manual and automated methods were used to select appropriate
conformations for the hydrophobic side chains of residues proposed to
be buried in the core of the IL-3 molecule. Residues 42-50, which have
been reported to constitute an additional helix (denoted A ) (8) were
manually placed in a helical conformation and docked against the face
of the B and D helices, principally via the side chains of
Leu48 and Met49 in order to be consistent with
the reported nuclear Overhauser effect constraints (8). The model was
evaluated for stereochemical parameters using Procheck (32). The
sequences corresponding to the predicted four-helix bundle of IL-3 and
their calculated exposure to the solvent, using the dssp program (33),
are shown in Fig. 1.
Fig. 1.
Sequence alignment of the proposed helices of
IL-3. The sequences were aligned as described under
"Experimental Procedures." Residues observed (GM-CSF and IL-5) or
proposed (IL-3) to be within helices are indicated in capital
letters with conserved residues boxed. Residues of less
than 5% ( ) or between 5 and 20% ( ) solvent exposure for GM-CSF
and IL-5 are indicated. Residues in IL-3 selected for mutation are
shaded.
[View Larger Version of this Image (19K GIF file)]
Oligonucleotide-directed Mutagenesis
A synthetic human IL-3
cDNA (34) was subcloned by standard techniques into the
HindIII/BamHI sites of pAlter (Promega
Corporation, Sydney, New South Wales, Australia).
Oligonucleotide-directed mutagenesis was carried out as described in
the pAlter protocol using mutagenic oligonucleotides synthesized on a
DNA synthesizer (Applied Biosystems Inc., Melbourne, Victoria,
Australia). Mutants were subcloned using the polymerase chain reaction
into the HindIII-BglII sites of the
Escherichia coli secretion vector pFLAG (International Biotechnologies Inc., Sydney, New South Wales, Australia). The full-length cDNA insert was sequenced in full to confirm the
presence of the desired mutation and the absence of other mutations.
All IL-3 analogues also carried a substitution of Tyr in place of Phe
at residue 133. This substitution had no effect on either biological or
binding activities (data not shown).
Expression of IL-3
Wild type IL-3 and analogues were
expressed in E. coli in order to enable production of highly
purified material in a sufficient quantity for full titration in
biological assay and low affinity binding experiments. Mutants of helix
D and K28E were expressed in the pFLAG system and purified as described
previously (12). Other analogues as well as wild type IL-3 were
expressed using the pEC611 vector (35), and the resultant insoluble
protein was recovered from E. coli by dissolution in 8 M urea containing 10 mM dithiothreitol and 25 mM Tris-Cl, pH 8.5. The proteins were purified by anion
exchange chromatography on S-Sepharose (Pharmacia, North Ryde, New
South Wales, Australia) in the presence of 8 M urea using
25 mM N-ethylmorpholine at a pH of 9.5 for wild
type IL-3 and more acidic analogues and at pH 10.2 for analogues more basic than wild type. Protein was eluted by a series of washes with
increasing concentrations of NaCl, with most analogues eluting at 75 mM NaCl. The peak fractions were identified by
SDS-polyacrylamide gel electrophoresis and subjected to reversed phase
high pressure liquid chromatography on either a 4.6 × 100-mm
RP-300 column or a 10 × 100-mm C8 column (Aquapore, Applied
Biosystems Inc., Melbourne, Victoria, Australia) using a gradient of
acetonitrile in the presence of 0.1% trifluoroacetic acid. The peak
fractions, as determined by SDS-polyacrylamide gel electrophoresis,
were pooled and quantified. IL-3 produced by either method showed
equivalent biological activity and receptor-binding properties (data
not shown).
Purification and Quantitation of IL-3
Direct protein
quantitation was performed by laser scanning densitometry using samples
of purified protein resolved on Coomassie-stained 13%
SDS-polyacrylamide gel electrophoresis (with an
acrylamide:bisacrylamide ratio of 19:1) and compared with lysozyme
standards using an LKB-Pharmacia Ultrascan XL system including GSXL
software.
Stability of IL-3 Analogues
The stabilities of IL-3
expressed in the pFLAG system or intracellularly in E. coli
were assessed by transverse urea gradient gel electrophoresis (36).
Samples (20 µg) of purified IL-3 or analogue were electrophoresed
toward the anode through 8% acrylamide gels (acrylamide:bisacrylamide
ratio of 19:1) containing a linear 0-8 M urea gradient and
the high pH buffer of Ref. 36. Stability was estimated as described
(36).
Stimulation of Hemopoietic Cell Proliferation
This was
measured by incorporation of [3H]thymidine into the human
erythroleukemic cell line TF-1 (37) as described previously (3).
Radioreceptor Assays
IL-3 expressed in the pFLAG system and
affinity-purified was radioiodinated to a specific activity of
approximately 500 Ci/mmol by the ICl method (38). Direct competitive
binding experiments were performed using CHO cells transfected
permanently with either the IL-3R alone (39) or IL-3R and R .
CHO cells expressing both IL-3R and R were obtained by
retransfecting cells (25) that expressed IL-3R with a pRUFpuro-R
retroviral expression plasmid that had been linearized with
ScaI. Pools of cells were obtained after selection with
puromycin (5 µg/ml) for 2 weeks and were demonstrated to express both
chains of the receptor by flow cytometry. For low affinity binding
measurements, 96-well multiwell dishes containing confluent monolayers
of CHO cells transfected with IL-3R were incubated with 60 µl of a
buffer (50 mM HEPES, 0.5% bovine serum albumin, pH 7.4)
containing 125I-IL-3 (5 nM), IL-3 (5 nM), and various concentrations of IL-3 or analogues. After
2 h at 25 °C, the medium was aspirated, and the cells were
briefly washed with phosphate-buffered saline. The cell-associated
radioactivity was dissolved in 10 mM Tris, 150 mM NaCl containing 1% Nonidet P-40 and transferred to 3DT tubes, and radioactivity was determined using a Cobra -counter (Packard, CT). For high affinity binding measurements, 96-well multiwell dishes containing confluent monolayers of CHO cells transfected with IL-3R and R were incubated with 60 µl of a HEPES/bovine serum albumin buffer containing 125I-IL-3 (0.3 nM) and various concentrations of IL-3 or analogues and
processed as above. Although these cells expressed approximately 10-fold more IL-3R than R , the extreme low affinity of IL-3R means that 95% of specifically bound 125I-IL-3 is
associated with the high affinity receptor.
RESULTS
Model of the Helical Core of IL-3
In order to facilitate
targeting of mutations to exposed residues, we developed a model for
the structure of IL-3. Although clearly related to GM-CSF and IL-5,
IL-3 only exhibits significant sequence identity in regions
corresponding to the helical cores of these cytokines (23% identity to
GM-CSF and 17% to IL-5) with 50-60% similarity, permitting reliable
alignment of the sequences only in these regions (Fig.
1). In particular, the high degree of conservation of
hydrophobic residues in the putative helices A and D of IL-3 suggested
that they pack against each other in a very similar manner to that of
GM-CSF and IL-5. We predicted the core helical regions of IL-3 to
consist of residues 14-29, 55-63, 72-82, and 104-119, in close
agreement with the nmr data (8). The assignment of these helices was
used as a framework for building a molecular model, which has allowed
the likely surface exposure of amino acid residues to be assessed (Fig.
1). The residues of helices A, C, and D that were predicted to be
exposed were then subjected to mutagenesis, and the resulting analogues
were examined for biological activity and their receptor-binding
properties.
Helix A of IL-3
We have demonstrated previously that, within
the putative helix A of IL-3, residue Asp21 is important
for association with the receptor -chain and residue Glu22 is crucial for association with the receptor
-chain (12). We have now sought to define further the contacts
between helix A of IL-3 and its receptor by the mutation of additional
residues Asn15, Ser17, Asn18,
Met19, Thr25, His26,
Lys28, and Gln29 that are predicted to lie on
the surface of the molecule. We chose to introduce positively charged
residues in place of hydrophilic residues, Ala for Met and His, and
perform charge reversal at position Lys28. The analogues
N15K, S17K, N18K, M19A, T25R, H26A, K28E, and Q29K were prepared from
E. coli and tested for their abilities to stimulate the
proliferation of TF-1 cells. The H26A, K28E, and Q29K analogues
exhibited wild type levels of bioactivity, while the N15K and M19A
analogues exhibited only 2-3-fold reduced biological potency (Fig.
2A). The S17K and T25R analogues were approximately 30-fold less potent than wild type IL-3 (Fig.
2A) and exhibited a similar reduction of potency of
competition for both the high affinity IL-3 receptor (Fig.
2B) and for the -chain of the receptor alone (Fig.
2C). This indicates that the residues Ser17 and
Thr25 behave similarly to Asp21 (12) and are
required for the selective interaction with the -chain of the
receptor. The N18K analogue was 60-fold less potent biologically than
wild type IL-3 (Fig. 2A), exhibited a 250-fold reduction of
potency of competition for the high affinity IL-3 receptor (Fig.
2B) and a 5-fold reduction of potency of competition for the
-chain of the receptor alone (Fig. 2C), suggesting that residue Asn18 may be involved in interactions with both
chains of the receptor. These biological and receptor binding data are
summarized in Table I. Since it was possible that the
reduced binding of the S17K, N18K, and T25R analogues to the -chain
of the IL-3 receptor may result from a general structural perturbation,
we examined their stabilities by transverse urea gradient
electrophoresis. Each analogue was apparently fully folded in the
absence of urea and exhibited a urea-induced transition from a fast
migrating (folded) form to a more slowly migrating (unfolded) form. The
estimated stability of these analogues was only slightly less than wild type IL-3 (Table I), consistent with normal folded structure. In
addition, this systematic investigation of helix A shows that no
residue in helix A other than Glu22 reported previously
(12) interacts exclusively with R . Since the N18K analogue showed
some apparent loss of interaction with R , we combined this mutation
with the E22R mutation in order to further abrogate interaction with
R . The resulting double mutant retained a small measure of
biological activity (data not shown) and thus presumably a weak ability
to interact productively with R .
Fig. 2.
Characterization of helix A analogues.
The indicated analogues were tested for their abilities to stimulate
the proliferation of TF1 cells as described (A), compete for
binding of 125I-IL-3 to high affinity (IL-3R /R )
receptors (B), or compete for binding of
125I-IL-3 to low affinity (IL-3R ) receptors
(C) as described under "Experimental Procedures." Data
are expressed as potency relative to IL-3 (100%) with values
calculated from the ED50 values of IL-3 and analogues where
potency = (ED50 (wild type)/ED50
(analogue)) × 100%. For each assay, error bars
representing the S.E. for results from separate experiments are
shown.
[View Larger Version of this Image (23K GIF file)]
Since only residue Glu22 has been found to be significant
for association with R and for bioactivity and its substitution by Arg leads to a dramatic loss of high affinity binding and biopotency (12), we chose to investigate a series of basic and/or bulky substituents at this position. Residues His, Arg, Lys, Phe, Trp, and
Tyr were introduced in place of Glu22, and the proteins
were expressed and purified as described under "Experimental
Procedures." These analogues were tested for their abilities to
stimulate the proliferation of TF-1 cells as shown in Fig.
3. All analogues exhibited weak biological activity with the following range of potencies (expressed as percentage of wild type): His (0.2%) > Lys Tyr Arg (0.005%) > Phe Trp (<0.001%). The extremely low activity of the Phe and
Trp analogues suggests that the introduction of bulky, hydrophobic
groups is highly deleterious to interaction with R .
Fig. 3.
Characterization of analogues substituted at
position 22. A representative experiment is shown. IL-3 ( ) and
analogues E22H ( ), E22R ( ), E22K ( ), E22F ( ), E22W ( ),
and E22Y ( ) were tested for their abilities to stimulate the
proliferation of TF1 cells as described under "Experimental
Procedures." Standard error bars are indicated where they
are sufficiently large with respect to the symbols.
[View Larger Version of this Image (24K GIF file)]
Helix C of IL-3
The presence of residual biological activity
of the E22R analogue (12) and other position 22 analogues, as well as
the failure to identify additional residues specifically involved in
R binding within helix A of IL-3, suggests that additional
determinants of IL-3 binding to R may be present elsewhere in the
molecule. Helix C of growth hormone has been implicated in its binding
to the second molecule of the growth hormone receptor, and several residues of IL-3 (Glu75 and Lys79) have been
reported to be required for activity (40), suggesting that mutations
within this region of IL-3 may lead to decreased interaction with R .
Molecular modeling suggested that helix C extends from residue 72 to 82 and that the hydrophobic residues Ile74, Ile77,
Leu78, and Leu81 may be buried and important
for the structure of this helix (Fig. 1). We hypothesized that the
introduction of charged residues or prolines at these positions would
destabilize the IL-3 molecule. Conversely, we predict that the surface
of helix C of IL-3 includes residues Ser72,
Glu75, Ser76, Lys79,
Asn80, and Leu82 and tested whether this may
form an additional site for recognition of R . We produced the IL-3
analogues of residues predicted to be buried (A71E/K/P, I74R/P, and
I77A) and of residues predicted to be exposed (S72K, E75K/A/Q, S76K,
K79A/E, N80A, L82A/E/R, and P83L) and measured their abilities to
stimulate the proliferation of TF-1 cells. These analogues demonstrated
activities similar to wild type (Table II) with the
exception the S72K, A71P, I77A, and I74R analogues, which were 8-, 9-, 15-, and 120-fold less potent than wild type IL-3, respectively. We
then measured the stabilities of these four analogues as well as those
of other analogues substituted at positions 71 and 74 and the L82E
analogue by transverse urea gradient gel electrophoresis (Table II).
The stabilities estimated differed widely, with the A71P/E, I74P, and
I74R substitutions causing a 50-70% decrease in stability relative to
wild type, consistent with major disruption of the normal IL-3 fold,
whereas the A71R, S72K, and L82E analogues were of similar stability to
wild type. The destabilizing effects of proline substitutions are
consistent with residue 71 being in a type II -turn and residue 74 lying within the C-helix of IL-3 as suggested previously (40). Residue
Ile74, but not Leu82, was also sensitive to the
introduction of a charged residue, consistent with predictions of
Ile74 being buried in the IL-3 structure and
Leu82 being exposed. The reduced biological activity of the
S72K was found not to be due to selective loss of binding to R ,
since this analogue was approximately 50-fold less potent than wild type IL-3 in both high and low affinity binding experiments (data not
shown). It was possible that weak interactions of helix C residues with
R was masked by the strong interaction mediated by
Glu22. Analysis of the surface mutations of helix C in
combination with the deleterious E22R mutation demonstrated no greater
reduction in biological activity beyond that seen with the E22R
mutation alone (data not shown). Thus, in IL-3, the region from residue 71 to 83 that encompasses helix C does not seem to play a direct role
in biological function.
Table II.
Relative activities of helix C analogues
The biological activity and stability of analogues substituted in helix
C are expressed relative to wild type IL-3 (100%) as described in
Table I. Each value is the mean of the estimates from experiments
performed at least twice.
| Analogue |
Biological activity |
Relative
stability |
|
|
%
|
| L68R |
28 |
NDa |
| A71E |
260 |
50
|
| A71P |
11 |
40 |
| A71R |
169 |
80 |
| S72K |
13 |
120
|
| I74P |
25 |
50 |
| I74R |
0.79 |
30
|
| E75Q |
180 |
ND a
|
| E75K |
155 |
ND a
|
| S76K |
295 |
ND a
|
| I77A |
6.7 |
ND a
|
| K79A |
204 |
ND a
|
| K79Q |
150 |
ND a
|
| N80A |
63 |
ND a |
| L82E |
63 |
110
|
| P83L |
150 |
110 |
|
|
a
ND, not determined.
|
|
Helix D of IL-3
The D helix is proposed to extend from
Trp104 to Glu119. In order to minimize
disruption of the structure of IL-3, we chose to mutate only those
residues predicted to lie on the surface of the D helix. Mutations were
chosen to alter the chemical character of the residues; in particular,
charged residues were replaced by amino acids of opposite charge, and
the large hydrophobic residue, Phe113, was replaced by a
small, aliphatic alanine residue. The mutations made were E106R, R108E,
R109E, K110E, T112R, F113A, K116E, and E119R. The proteins were
expressed in E. coli using the pFLAG system, purified by
affinity chromatography, and tested for their abilities to stimulate
the proliferation of TF-1 cells. As shown in Fig.
4a, a range of potencies was observed with
analogues R108E, K110E, F113A, K116E, and E119R, showing activities
reduced 5-15-fold compared with wild type. These analogues were then
examined for their abilities to compete for binding to the high
affinity (IL-3R /R ) or low affinity (IL-3R ) IL-3 receptors
(except K110E, which expressed poorly). As shown in Fig. 4b,
each of these analogues was less able than wild type to compete for
binding to high affinity receptors, and the reduced potencies of these
analogues were paralleled in binding to the IL-3R alone (Fig.
4c). The reduction in biological activity of these analogues
apparently results from decreased association with the receptor, in
particular the -chain. These biological and receptor binding data
are summarized in Table III. The stabilities of the
least active analogues, R108E, F113A, K116E, and E119R, were tested by
transverse urea gradient gel electrophoresis and found to be equivalent
to wild type except for the R108E analogue, which showed a 40%
reduction in stability (Table III). Thus, the reduced binding of these
IL-3 analogues to the IL-3R probably results from the loss of
receptor contacts rather than from general structural perturbation.
Fig. 4.
Characterization of helix D analogues.
Representative experiments for the indicated analogues are shown. IL-3
( ) and analogues R108E ( ), R109E ( ), T112R ( ), F113A ( ),
K116E ( ), and E119R ( ) were tested for their abilities to
stimulate the proliferation of TF1 cells (a), compete for
binding of 125I-IL-3 to high affinity (IL-3R / )
receptors (b), or compete for binding of
125I-IL-3 to low affinity (IL-3R ) receptors
(c) as described under "Experimental Procedures." For
the binding assays, data are expressed as a percentage of binding seen
in the absence of competitor. Nonspecific binding has not been
subtracted. Standard error bars are indicated where they are
sufficiently large with respect to the symbols.
[View Larger Version of this Image (23K GIF file)]
Table III.
Relative activities of helix D analogues
The biological activity, receptor binding, and stability of analogues
substituted in helix D are expressed relative to wild type IL-3 (100%)
as described in Table I. Each value is the mean of the estimates from
experiments performed at least twice.
| Analogue |
Biological
activity |
High affinity binding |
Low affinity binding |
Relative
stability |
|
|
%
|
| E106R |
228 |
29 |
NDa
|
ND |
| R108E |
18 |
9.5 |
18 |
60
|
| R109E |
156 |
203 |
ND a
|
ND
|
| K110E |
14 |
40 |
ND a
|
ND
|
| T112R |
47 |
196 |
417 |
ND
|
| F113A |
7.3 |
14 |
1.7 |
100
|
| K116E |
18 |
12 |
2.4 |
100
|
| E119R |
5.6 |
5.5 |
0.56 |
120 |
|
|
a
ND, not determined.
|
|
DISCUSSION
We used a prediction of the four-helix bundle core of the IL-3
molecule to help target our mutagenesis to surface residues that may be
available for receptor contact. Previous studies have implicated
residues near both the N and C termini of IL-3 as being required for
binding to the -chain of the IL-3 receptor. Using the combination of
binding experiments on both the high affinity (IL-R /R ) and low
affinity (IL-R ) receptors, we identified seven residues,
Ser17, Asn18, and Thr25 within
helix A and Arg108, Phe113, Lys116,
and Glu119 within helix D of IL-3 that are important for
binding to IL-3R . An additional residue in helix A,
Asp21, has been shown previously to be important for
binding to IL-3R (12). Although no single residue was found to be
critical for binding to IL-3R , together these eight residues can
fully account for the observed affinity of IL-3 for IL-3R ,
suggesting that the major part of the recognition site for IL-3R has
been defined. Structurally, the juxtaposition of the A and D helices
directs these eight residues to form a nearly continuous surface that is available for binding to IL-3R (Fig. 5). The
apparent insensitivity to mutation of residue Thr112, which
is predicted to lie in the middle of this patch, may be the result of
our choice of an Arg residue as replacement, which may deputize for the
nearby side chain of Arg108 in interacting with IL-3R .
Olins et al. (13) report that the replacement of
Thr112 by Glu or Tyr results in greater than 5-fold loss of
biological activity. In addition to the identification of the probable
surface residues Lys110 and Phe113 observed by
other workers (9, 13), we found residues Lys116 and
Glu119 to be important for biological function. Our results
extend these observations by demonstrating that the surface of helix D
is specifically involved in binding to IL-3R .
Fig. 5.
The proposed face on IL-3 responsible for
binding to IL-3R . The model of IL-3 is represented in diagram
form, using Molscript (42) and Raster3d (43), viewed toward the face of the D and A helices. Residue -carbon atoms and side chains are represented by Corey-Pauling-Koltun spheres shaded according to significance; residues for which a >5-fold effect was seen on mutagenesis are dark, while other mutated residues are
light.
[View Larger Version of this Image (90K GIF file)]
The normal interaction of IL-3 with R requires the integrity of the
conserved residue Glu22 but is not completely abrogated by
charge reversal at this position (12). Growth hormone is known to
employ helices A and C for binding to molecule 2 of its receptor. By
analogy, we sought to locate additional IL-3 residues that interact
with R by mutation of residues in the A and C helices that were
predicted to lie close to Glu22 in the tertiary structure
of IL-3. Within helix A of IL-3, we found Ser17,
Asn18 and Thr25 to be additional determinants
for interaction with IL-3R rather than with R , although
Asn18 apparently interacts with both chains of the
receptor. Substitution of residues predicted to lie on the surface of
helix C revealed that they were not important for biological function,
and when combined with the E22R substitution, there was no reduction in biological activity beyond that with the E22R substitution alone. Our
observations with the E75K and K79E mutations differ from those of
Dorssers and co-workers (40), who observed greater that 100-fold
reduction in activity with their E75R and K79E analogues produced from
inclusion bodies in E. coli. Our IL-3 E75K and K79E analogues were produced with N-terminal FlagTM peptides and
purified using affinity chromatography and quantified by Coomassie
staining of SDS-polyacrylamide gels, which may have helped to overcome
any potential problems caused by the poor solubility of some IL-3
analogues produced in E. coli.
Glu22 is the only residue identified as required for
association with R uniquely, as judged by the selective loss of high
affinity binding (Table I). However, neither charge reversal nor
introduction of bulky residues was able to completely abrogate
biological activity. This contrasts with GM-CSF, in which replacement
of the homologous Glu21 by Lys or Arg generated complete
antagonists and the Phe and His substitutions led to weak partial
agonism (26). Several observations suggest that R may interact more
intimately with IL-3 than with GM-CSF. First, the degree of affinity
conversion effected by R on the IL-3R is much greater than for
the GM-CSF receptor -chain (16, 41). Second, three individual
mutations in the putative B-C loop of the membrane-proximal
extracellular domain (domain 4) of R are able to eliminate the high
affinity binding of GM-CSF, but they exhibit only modest effects on the binding of IL-3 (41). In addition to the pivotal role played by residue
Glu22 of IL-3, the recognition of R by the
IL-3·IL-3R complex may result from the combination of several weak
R /IL-3 interactions, not detectable by our mutagenic strategy.
Alternatively, R may directly recognize IL-3R itself, since the
two receptor chains must be brought into very close proximity by their
both binding to helix A of IL-3. Either of these possibilities suggests
a fundamental difference between the structure of the IL-3 receptor
complex and the closely related GM-CSF receptor complex that may be
resolved ultimately by analyzing the interaction of ligands and
receptors in solution or by x-ray crystallography.
FOOTNOTES
*
This work was supported by the National Health and Medical
Research Council of Australia. The costs of publication of this article were defrayed in part by the
payment of page charges. The article
must therefore be hereby marked
"advertisement" in accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
¶
A Rotary Peter Nelson Leukaemia Research Fellow of the Anti-Cancer
Foundation of the Universities of South Australia.
To whom correspondence should be addressed. Tel.: 61-8-8222-3471;
Fax: 61-8-8222-3538.
1
The abbreviations used are: IL, interleukin;
IL-3R , IL-3 receptor -chain; R , -chain; GM-CSF,
granulocyte-macrophage colony-stimulating factor; CHO, Chinese hamster
ovary.
Acknowledgments
We thank Dr. J. Woodcock for the provision of
the CHO cells transfected with IL-3R or IL-3R /R .
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