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(Received for publication, September 8,
1995; and in revised form, December 5, 1995) From the
Thrombin is a coagulation system protease that also serves as a
potent stimulator of gene expression in several cell types, including
endothelial cells (EC). We and others have previously demonstrated that
the transcription of platelet-derived growth factor (PDGF) B-chain
(c-sis) by EC is stimulated severalfold by thrombin. Here we
examine the molecular mechanism of this regulatory process using bovine
aortic EC transiently transfected with a vector containing the
chloramphenicol acetyltransferase (CAT) gene under the control of a
400-base pair fragment of the human PDGF B-chain promoter. Thrombin
treatment of these cells caused a severalfold increase in CAT
expression. Deletion analysis and site-directed mutagenesis revealed
that the region spanning nucleotides -61 to -53 from the
transcription initiation site (referred to as the thrombin response, or
ThR, region) was critical for the transcriptional response to thrombin.
Electrophoretic mobility shift assays with an oligonucleotide
corresponding to the region -64 to -44, which contained the
ThR region, led to the identification of a thrombin-inducible nuclear
factor (TINF) in extracts from thrombin-treated, but not control, EC.
TINF was formed as early as 40 min post-thrombin treatment, persisted
for at least 7 h, but was no longer present after 24 h. TINF appeared
in the absence of de novo protein synthesis. The ThR region
consists of a repeat of a CCACCC element in an ABBA configuration,
which, based on mutation analysis and transfection assays, appears to
be critical in mediating thrombin stimulation of the PDGF B-chain gene.
The conservation of the ThR region in the promoter of the PDGF B-chain
among three species (human, feline, and murine) further supports the
importance of this region as a cis-acting regulatory element.
Endothelial cell (EC) ( Regulated EC
expression of PDGF production in vivo may be important in
stimulating proliferation of the underlying perivascular cell types and
in the recruitment of both leukocytes and SMC in response to vascular
injury(11, 12) . A probable physiological modulator of
PDGF release from the endothelium is Regulation of PDGF B-chain gene transcription
has been explored in multiple cell types. Specific sequences have been
defined within the 5` untranslated region of the B-chain gene, which
may be important in the regulation of its transcription(23) .
Transfection experiments in K-562 cells (a hematopoietic cell type)
have defined a minimal promoter region which includes the sequence
extending 400 bp 5` of the transcription initiation site(24) .
In addition, several DNase I-hypersensitive sites have been located in
the human PDGF B-chain gene, although localization of these sites has
focused on the first intron and the region downstream of the coding
sequence with little known about the 5` flanking
region(25, 26) . Recently, Kachigian et al.(27) have defined a minimal promoter for basal expression
of the PDGF B-chain gene in EC. This promoter region contains several
consensus sequences for binding such transcriptional factors as Ets
family members and AP-1 complexes. These investigators, however, have
not examined the role of any of these elements in agonist-stimulated
transcription of this gene in EC. Others have used linker scanning of
the PDGF B-chain core promoter to identify an element essential for
TPA-induced activation of this gene in K562 cells (28) . In
this report, we present evidence supporting the identification of a
9-bp region in the PDGF B-chain promoter as being responsible for
thrombin-induced transcription of this gene. We further demonstrate
that a thrombin-inducible nuclear factor (TINF) and the transcription
factor Sp1 are two distinct factors that bind to this region of DNA.
Figure 1:
PDGF B-chain promoter region and its
response to thrombin. Bovine aortic EC were transfected with the p400
PDGF B-chain promoter-CAT construct as described under
``Experimental Procedures.'' Cells were then treated with the
indicated concentrations of thrombin for 18 h. Cell extracts were
prepared and assayed for CAT activity as described. Values represent
the mean of duplicate cultures. Results are representative of those
obtained with three strains of EC and two lots of
thrombin.
Figure 2:
Identification of the ThR in the PDGF
B-chain promoter using deletion analysis. A, schematic diagram
indicating the location of the deletion constructs in the PDGF B-chain
promoter. Each construct label indicates the remnant size (bp) of the
promoter region cloned into the expression vector (based on the
transcription initiation site described by Pech et al. in (24) ). TIS indicates the transcription initiation
site. B, bovine aortic EC were transfected with the deletion
mutant constructs depicted in A, treated with or without
thrombin (10 units/ml) for 16 h, and CAT activity was determined.
Results represent mean of triplicate cultures ± S.E. Figure is
representative of more than four independent
experiments.
To further identify the
specific sequence within the p86 construct of the PDGF B promoter
responsible for thrombin induction, we employed an alternative
approach. Transcription factors present in the nuclear extracts of
thrombin-treated, but not in untreated EC, should bind to their
specific DNA sequence, allowing visualization by EMSA. Oligonucleotides
corresponding to two segments of the region containing the thrombin
response element, one corresponding to the 5` half, designated A
(nucleotides -79 to -66) and the second, the 3` half,
designated B (nucleotides -64 to -44) were synthesized. An
oligonucleotide corresponding to the -43 to -31 sequence,
outside of the thrombin response region, designated C was prepared as a
control (Fig. 3). Each oligomer was radiolabeled for use in
EMSA. Incubation of oligonucleotide A or C with nuclear extracts
prepared from bovine aortic EC that had been treated with thrombin did
not reveal any novel shifted bands compared with nuclear extracts from
untreated EC (data not shown). The B oligomer, however, yielded a
thrombin-dependent DNA-protein complex that migrated more rapidly than
several other complexes that were constitutively present in nuclear
extracts (Fig. 4). The specificity of these DNA-protein
complexes was demonstrated by competition experiments with 100-fold
molar excess of unlabeled oligonucleotides, representing several
consensus binding site sequences for known transcription factors as
well as other sequences that are proximal to the B region (Fig. 4). These oligonucleotides are fully defined in Table 1. The competition study showed that among the many
oligomers tested, only an excess of the unlabeled oligonucleotide B
competed efficiently with labeled B oligomer in binding to TINF.
Figure 3:
Region of the PDGF B-chain promoter
containing the thrombin response element. Diagram showing the sequence
of the region involved in thrombin responsiveness. Oligonucleotide
sequences used as probes for EMSA are shown in boxes. The arrows indicate the beginning position of the PCR constructs.
The ThR element is underlined.
Figure 4:
Characterization of the thrombin response
region by EMSA. Nuclear extracts prepared from bovine aortic EC treated
without (control) or with thrombin (10 units/ml) for times indicated
were used in EMSA. The 5` end-labeled B sequence oligomer (see Fig. 3) was incubated with nuclear extracts (5 µg) in the
absence or presence of a 100-fold molar excess of unlabeled
oligonucleotides corresponding to the B region, C region, A region, AP1
binding sequence, NF
To
demonstrate that the B region was a functional thrombin response
element, we generated a construct that contained the B region attached
to the thrombin-unresponsive minimal promoter region p43 (Fig. 2B) and assayed for thrombin-stimulated CAT
activity in EC. This new PCR-generated construct, designated p64, was
linked to the CAT reporter gene and used for transfection into bovine
aortic EC. As shown in Fig. 5, EC containing the p64 construct
responded to thrombin with greater than a 3-fold increase in CAT
expression over similarly transfected controls that were not treated
with thrombin, and this level was comparable to cells containing the
fully thrombin-responsive p86 construct. In addition, thrombin
treatment of the p64 construct-transfected EC yielded 3 times the -fold
induction in CAT activity than was seen with the p43
construct-transfected EC, indicating that the B region was sufficient
to restore thrombin responsiveness to the p43 construct. Taken
together, these data strongly suggested that the B region contained the
element(s) necessary to increase the transcription of the PDGF B-chain
gene as a result of thrombin stimulation.
Figure 5:
Functional analysis of the thrombin
response region. Bovine aortic EC were transfected with the p43 and p64
CAT constructs as well as p86-CAT as positive control, treated with or
without thrombin (10 units/ml) for 16 h, and CAT activity was
determined as described under ``Experimental Procedures.''
Results represent mean of triplicate cultures ± S.E. Figure is
representative of four independent experiments. -Fold induction of CAT
activity is expressed as a ratio of cpm of thrombin-treated
cultures/cpm of media-treated cultures.
Figure 6:
Time course of TINF appearance in EC
nuclear extracts. Nuclear extracts prepared from bovine aortic EC
treated without (control) or with thrombin (10 units/ml) for the times
indicated were heat treated (10 min, 47 °C) to eliminate Sp1
binding and then incubated with labeled double-stranded oligomer B and
used in EMSA. Arrow indicates the position of the TINF
complex.
In an attempt to identify other nuclear proteins in
thrombin-stimulated EC that bind to the B region and to determine the
novelty of TINF, competition assays were performed using
oligonucleotides containing consensus binding site sequences for
several known nuclear factors. As shown in Fig. 4, many
consensus sequence oligonucleotides failed to cause any reduction in
the TINF-DNA complex. Effective competition was observed, however, with
a 100-fold molar excess of unlabeled oligomer representing the
consensus binding site for Sp1 (Fig. 8A). This result
suggested that in addition to the TINF complex, Sp1-like proteins may
bind to the B region. To determine whether TINF and Sp1 are distinct
proteins, a ``supershift'' experiment was performed in which
Sp1 antibody, Egr-1 antibody, or purified IgG was incubated with the
nuclear extract-labeled oligomer mixture prior to the mobility shift
assay. One of the major constitutively present bands (band 1)
was shifted to a lower mobility in the gel (band ss-Sp1) with
the Sp1 antibody, whereas TINF migration was unaltered (Fig. 7).
The Egr-1 antibody as well as the IgG control had no effect on any of
the bands from the EC extracts. Evidence that TINF is distinct from Sp1
includes its gel mobility, which is greater than the Sp1 proteins, its
insensitivity to heat treatment (47 °C for 10 min; data not
shown)(35) , and the inability of an Sp1 polyclonal antibody to
either deplete nuclear extracts of TINF or to supershift TINF in the
EMSA.
Figure 8:
Characterization of the specificity of
TINF complex formation by competition in EMSA. Nuclear extracts were
prepared from bovine aortic EC treated without (control) or with
thrombin (10 units/ml) for 5 h. The 5` end-labeled B oligonucleotide
was incubated with nuclear extracts (5 µg) in the absence or
presence of 100-fold molar excess of various mutated B oligonucleotides
as indicated. EMSA was performed as described under ``Experimental
Procedures.'' Arrow indicates the position of the TINF
complex.
Figure 7:
Supershift evidence that TINF and Sp1 are
distinct proteins. Nuclear extracts were prepared from bovine aortic EC
treated without (control) or with thrombin (10 units/ml) for 5 h.
Labeled double-stranded oligomer B was incubated with nuclear extracts
(5 µg) from EC as described under ``Experimental
Procedures'' and then incubated with 1 µl of medium, anti-Sp1
antiserum, anti-Egr-1 antiserum, or IgG prior to electrophoresis. SS refers to the supershifted Sp1
band.
Figure 9:
Characterization of the specificity of
TINF complex formation by competition in EMSA by use of radiolabeled
mutated oligomers. Nuclear extracts were prepared from bovine aortic EC
treated without (control) or with thrombin (10 units/ml) for 5 h.
Labeled double-stranded wild type oligomer (B) or mutated oligomers (B
mutant and S-610587), were incubated with EC nuclear extracts (5
µg). EMSA was performed as described under ``Experimental
Procedures.'' Arrow indicates the position of the TINF
complex.
To confirm that
the CCACCC element is mediating thrombin-induced transcription of the
PDGF B-chain gene in bovine aortic EC, we generated several mutants of
the PDGF B-chain promoter by PCR and ligated them into the CAT
expression vector in order to perform functional analyses. These
mutants included a p64 mutant plasmid, in which the CCACCCACC (ThR
region) sequence was fully substituted by AAGTTTGAA, and p64S610587, in
which four base substitutions were made within the CCACCC element.
These mutant plasmid constructs were used to transfect bovine aortic
EC, and CAT activity was measured in replicate cultures following
treatment with thrombin or no stimulator. Cells transfected with the
mutant constructs did not demonstrate thrombin responsiveness, although
EC transfected with either of two wild-type constructs, p86 and p64,
exhibited a severalfold increase in CAT activity in response to
thrombin (Fig. 10). These results further support a role for the
CCACCC element in thrombin stimulation of PDGF B-chain gene expression.
Figure 10:
Transfection assay using PDGF B-chain
promoter-CAT constructs with mutations in the thrombin response region.
Bovine aortic EC were transfected with the p86, p64, p64 mutant, and
p64S610587 PDGF B-chain promoter constructs, treated with or without
thrombin (10 units/ml) for 16 h, and CAT activity was determined as
described under ``Experimental Procedures.'' Results
represent mean of triplicate cultures ± S.E. Figure is
representative of at least six independent experiments. -Fold induction
of CAT activity is expressed as a ratio of cpm of thrombin-treated
cultures/cpm of media-treated cultures.
We have employed a combination of reporter gene
construct-transfection experiments and gel shift assays to map the
region of the PDGF B-chain gene that controls the transcriptional
response to thrombin in EC. The ThR region is localized to nucleotides
-61 to -53 and contains sequences capable of binding to a
thrombin-induced nuclear factor, denoted as TINF, as well as
constitutively expressed protein(s). The TINF complex appears rapidly
in nuclear extracts of EC treated with thrombin, as early as
20-40 min post-stimulation, is relatively long-lived, being
maintained up to 7 h, and is absent by 24 h after treatment. The
appearance of the TINF complex in the nucleus does not require de
novo protein synthesis, which may indicate that it pre-exists in
an inactive form in the cell and that thrombin either directly or
indirectly causes its activation and/or translocation. We show by
competition in EMSA that the interaction between the thrombin-induced
nuclear proteins and the B region of the PDGF B-chain promoter is
specific. Among a panel of nuclear factor oligomers representing the
consensus sequence binding sites for AP1, AP2, NF TINF and Sp1 are both nuclear factors that have
the capacity to bind to oligonucleotide sequences present in the B
region of the PDGF B-chain gene yet appear to be distinct proteins.
Using heat treatment of nuclear extracts, we inhibited Sp1 binding, as
described by others (35) , but not TINF binding to the B region
sequence. Depletion of Sp1 from thrombin-stimulated EC nuclear extracts
with polyclonal Sp1 antibody prior to binding with B region oligomer,
dramatically reduced the Sp1 bands 1 and 2 without significantly
changing the TINF band in an EMSA. In a supershift assay, in which the
same nuclear extracts were allowed to bind to the B region oligomer
first and then allowed to react with Sp1 antiserum, we observed
retarded mobility of the SP-1 bands without a change in TINF mobility. The GC box is the classic high affinity Sp1-binding
site(40) . However, this is not the nuclear factor's
target sequence in the ThR region. In the ThR region the sequence
CCACCC is present as overlapping, inverted repeats. Extensive reports
exist in the literature that show Sp1 is capable of binding to a CACCC
sequence(36, 37, 38, 41) , which is
present in each of the inverted repeats of the ThR region of the PDGF
B-chain gene. Although Sp1 is widely distributed through many cell
types and species, binding sites for this strong transcriptional
activator have been reported in the promoters of many cell-specific
genes. Direct interactions between Sp1 and a variety of other binding
proteins have been implicated in several regulated processes, including
hormone activation(42) , regulation by sterols(43) ,
heat shock response(44) , and tissue-specific gene
expression(45) . Sp1 has been shown to contain several
independent transcriptional activation domains in addition to the zinc
finger region located within the C terminus of the protein (46) . Regions outside of the DNA binding domain of Sp1 may be
responsible for modulating transcriptional activity by allowing for its
interaction with other factors in the transcription initiation complex,
such as TINF. Sp1 sites have been identified near binding sites for
other transcriptional activators, such as CTF/NF-1(47) ,
AP2(48) , OTF-1(49) , and, in fact, a functional
interaction between Sp1 and AP-1 has been demonstrated(50) .
Recently, Sanchez et al.(51) have shown cooperation
of a sterol regulatory element-binding protein and Sp1 in regulating
the transcription of the low density lipoprotein receptor gene. We
have demonstrated that the ThR segment within the B region of the PDGF
B-chain gene is involved in the transcriptional response to thrombin.
The conservation of the ThR region of the PDGF B-chain gene across
different species (human(52) , feline(52) , and
murine(53) ) suggests that the region may serve as a binding
site for important cis-acting elements. If this region is in fact a
site responsive to a thrombin-induced transcriptional activator, then
one might anticipate finding the CCACCC motif within the promoter
region of other thrombin-responsive genes. In fact, the CCACCC-motif is
also present in the promoters of other EC genes that are regulated by
thrombin. The PDGF A-chain gene, which is induced by thrombin, contains
this motif both in the sense and ``antisense'' DNA strands
(positions 269 and 233 bp from the TATA box, respectively). The CCCACC
motif is also present in the promoters of other thrombin-regulated
genes, such as tissue factor (as GGGTGG at 85 bp and CCCACC at 291 bp
from the TATA box), thrombomodulin (CCCACC at 56 bp and GGGTGG at 246
bp from the TATA box), VCAM-1 (at 117 bp from the TATA box), and von
Willebrand factor (at 403 bp from the TATA box). The PAI-1 gene,
another EC gene that is induced by thrombin, contains a GGGTGG at
positions 46 and 401 from the TATA box, and it has been shown that the
sequence GGGTGG in the sense strand at position 46 is responsible for
TPA induction of this gene(50) . Our studies with mutant
sequence oligomers of the ThR region suggest that in
thrombin-stimulated EC the CACCC motif of the PDGF B-chain promoter is
the recognition site for both TINF and Sp1, and the orientation is of
no consequence to nuclear factor binding. The mechanism by which these
two nuclear factors mediate induction of transcription by thrombin is
not known. In gel shift assays, we observed a reduction of Sp1 binding
to the B region oligomer in thrombin-treated nuclear extracts, possibly
because TINF and Sp1 bind in a mutually exclusive fashion and therefore
compete for the oligomer. Jin et al.(28) have
recently identified a site in the PDGF B-chain promoter that was
essential for phorbol ester-induced PDGF B-chain transcription in K-562
cells. Subsequent in vivo footprinting analyses by Dirks et al.(54) have confirmed that this region binds a
transcriptional activator in phorbol ester-treated K562 cells. This
reported TPA response element coincides with the region that we report
as the ThR region. Our evidence indicates that TINF is a different
nuclear factor than the TPA-induced protein identified by Jin et
al. and referred to as band ``m''(28) . TINF has
substantially greater gel mobility than band m and, unlike band m,
appearance of TINF in the nucleus is independent of de novo protein synthesis. It should be noted that there is a difference
in the numbering of the position of the ThR region in our report and
the PMA-responsive region in the report of Jin and co-workers, which is
based on a discrepancy in the literature of the position of the
transcription initiation site of the PDGF B-chain gene. We have
followed the mRNA initiation site described by Pech et al.(24) rather than that of Rao et al.(23) . In conclusion, we have identified a sequence in
the PDGF B-chain promoter which is involved in thrombin-induced
transcription of this gene in bovine aortic EC. Mutational analysis of
the ThR region has revealed that the CACCC-motif is required for a
thrombin response. We also provide evidence of a specific
thrombin-induced nuclear factor that binds to this region. Sp1 protein
is also capable of binding to the CACCC sequence, but is distinct from
TINF. The mechanism by which these transcription factors interact to
regulate transcription of the PDGF B-chain gene is the subject of
further investigation.
Volume 271,
Number 6,
Issue of February 9, 1996 pp. 3025-3032
©1996 by The American Society for Biochemistry and Molecular Biology, Inc.
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
FOOTNOTES
ACKNOWLEDGEMENTS
REFERENCES
)injury or activation and the
subsequent proliferation of vascular smooth muscle cells (SMC) are
central to the development of atherosclerosis(1) . While the
triggering molecule(s) responsible for stimulating the multiplication
of SMC is not known, a viable candidate is platelet-derived growth
factor (PDGF), the major mitogen in human serum (2, 3, 4, 5) . PDGF, although
originally purified from human platelets, is produced in a regulated
manner by numerous transformed cells and by several types of normal
diploid cells, including EC, SMC, mesangial cells, activated
macrophages, and cytotrophoblasts(6, 7, 8) .
PDGF consists of a disulfide-linked heterodimer or homodimer of two
distinct but homologous subunits designated the A- and
B-chains(6) . The B-chain is the protein product of the
c-sis proto-oncogene(9, 10) .
-thrombin, a multifunctional
serine protease generated at sites of vascular injury, which has been
demonstrated in vitro to induce the expression and release of
PDGF A- and B-chains from
EC(13, 14, 15, 16, 17) .
Thrombin, at physiologically relevant concentrations, stimulates a
number of EC functions including the generation of
prostacyclin(18) , platelet-activating factor(19) , von
Willebrand factor(20) , plasminogen activator(21) , and
its inhibitor(22) . The molecular mechanism underlying thrombin
stimulation of transcription of the PDGF B-chain gene or, in fact,
thrombin induction of any gene in EC, as well as in any other cell
type, remains unknown.
Materials
Bovine thrombin was purchased from
Miles, Inc. (Kankakee, IL). Dulbecco's modified Eagle's
medium/Ham's F-12 medium (DMEM/F-12) culture medium was from
Irvine Scientific (Santa Anna, CA) and fetal bovine serum (FBS) was
obtained from Whittaker Bioproducts (Walkersville, MD). Rabbit
polyclonal IgG to Sp1 was purchased from Santa Cruz Biotechnology
(Santa Cruz, CA), and human recombinant Sp1 was from Promega (Madison,
WI). Tissue culture plastic was from Costar (Cambridge, MA). All other
chemicals, unless otherwise noted, were purchased from Sigma.Cell Culture
Bovine aortic EC were isolated as
described previously (29) and grown in DMEM/F-12 containing 5%
FBS. At confluence the EC were routinely subcultured at 1:3 or 1:5
ratios by trypsin-EDTA treatment. Penicillin (100 units/ml) and
streptomycin (100 µg/ml) were included in the media of cells
cultured for assay. Bovine aortic EC were used at passages 3-12.
Human umbilical vein EC were isolated from undamaged segments of
1-3-day-old umbilical cords, as described
previously(29) , and grown in DMEM/F-12 supplemented with 20%
FBS. Human umbilical vein EC were used in primary culture.PCR Amplification of Fragments of the PDGF B-chain
Promoter, Cloning, and Plasmid Preparation
Based on the
published sequence of the 5` flanking region of the PDGF B-chain
gene(24) , we synthesized several primers, which were used for
amplification of regions of the promoter. A 400-bp region upstream of
the transcription initiation site, as well as several shorter
fragments, were amplified using human EC DNA (200 ng) (30) and
primers (130 pM of each) shown in Table 1in a total
volume of 100 µl of 1 Taq DNA polymerase buffer
(Promega). The amplification was carried out using a Perkin-Elmer Cetus
thermal cycler. Cycling times were 3 min at 95 °C (denaturation), 3
min at 40 °C (annealing), and 3 min at 72 °C (extension).
Twenty-five cycles were performed, concluding with a 3-min extension at
72 °C. The resulting PCR products were resolved by low melting
point agarose gel electrophoresis(31) . The purified DNA was
digested with the restriction enzyme PstI in order to cleave
the synthetic sites flanking the amplified DNA and then cloned into
pBluescript (KS
) vector (Stratagene, Inc., La Jolla,
CA) and into a promoterless pBasicCAT vector from Promega. Plasmid DNAs
were purified using Qiagen columns (Qiagen, Chatsworth, CA) according
to the manufacturer's directions. All the amplified DNA fragments
were confirmed by sequencing (Sequenase version 2.0, U. S. Biochemical
Corp.).
Transfection Protocol and Chloramphenicol
Acetyltransferase (CAT) Assay
Bovine aortic EC were grown in
six-well plates to about 80% confluence and washed with Opti-MEM I
reduced-serum media (Life Technologies, Inc.) prior to transfection.
The optimal transfection efficiency was obtained using 5 µg of DNA
and 15 µg of Lipofectin (Life Technologies, Inc.) in 1 ml of
Opti-MEM I as described by the manufacturer. Following incubation for
16 h at 37 °C, 5% CO
, the medium was replaced with
fresh Opti-MEM I with or without bovine
-thrombin (10 units/ml or
as specified). At the time indicated in the figure legends, cells were
harvested by scraping from the plates and lysed by repeated freeze/thaw
cycles. The CAT assay was performed using
[
C]chloramphenicol and Tris buffer according to
the method of Rosenthal(32) , and the reaction products were
extracted by simple phase-extraction(33) . All determinations
were obtained within the linear range of the assay, typically between
0.7 and 30% conversion of [
C]chloramphenicol.
Presented data represent the mean of at least duplicate transfection
wells and are normalized to protein content per well, as determined by
the BCA protein assay (microtiter plate protocol) (Pierce).Electrophoretic Mobility Shift Assay
(EMSA)
Nuclear extracts were prepared as described by Dignam et al.(34) . Double-stranded synthetic probes for EMSA
were prepared by heating equal amounts of complementary
oligonucleotides to 65 °C and allowing then to cool to room
temperature. All the oligonucleotides used in these studies were
end-labeled using T4 kinase (Boehringer Mannheim) and
[-
P]ATP (DuPont NEN). The binding buffer
solution contained Tris-HCl (10 mM, pH 7.5), NaCl (50
mM), MgCl
(1 mM), EDTA (0.5 mM),
dithiothreitol (0.5 mM), glycerol (4%, v/v), poly(dI-dC) (0.1
mg/ml) (Pharmacia Biotech Inc.), with protease inhibitors pepstatin (5
µg/ml), leupeptin (5 µg/ml), aprotinin (5 µg/ml), and
antipain (5 µg/ml) (Boehringer Mannheim) added immediately before
use, and 5 µg of nuclear extract protein in a final volume of 10
µl. Labeled oligonucleotide (50,000 cpm/35 fmol) was added,
and the incubation was continued for 20 min at room temperature.
DNA-protein complexes were separated by electrophoresis on a 6%
polyacrylamide gel in 22.5 mM Tris base, 22.5 mM boric acid, and 0.5 mM EDTA at room temperature in a
cooled circulating electrophoresis apparatus and visualized by
autoradiography. Where indicated, competing oligonucleotides at a
100-fold molar excess (3.5 pmol) were used.
Thrombin Induces CAT Expression Driven by the p400-PDGF
B-chain Promoter Region in Bovine Aortic EC
To investigate the
effects of thrombin on the promoter region of the PDGF B-chain gene, we
first generated a 400-bp promoter fragment directly 5` to the
transcription initiation site of this gene using PCR and primer
oligonucleotides, the sequences of which were derived from the
published sequence of Pech et al.(24) . For functional
studies, the amplified fragment was subcloned into the pCAT-basic
vector upstream of the reporter gene chloramphenicol acetyltransferase
(CAT). Thrombin responsiveness of the promoter region of the PDGF
B-chain gene was evaluated by transiently transfecting bovine aortic EC
with the synthesized 400-bp CAT construct, subsequently treating these
cells with increasing concentrations of bovine
-thrombin
(0-8 units/ml) for 24 h, and ultimately quantitating CAT activity
in the cell lysates. A 24-h period following thrombin addition was
sufficient to allow for readily detectable CAT in the lysates of
transfected EC. Increased levels of CAT were observed in the bovine
aortic EC containing the 400-bp CAT construct in response to as little
as 0.1 units/ml thrombin, and maximal CAT expression was achieved at 8
units/ml thrombin (Fig. 1). EC transfected with the pCAT-basic
vector alone showed no increase in response to thrombin (data not
shown). In a study with several independently isolated strains of
bovine aortic EC transfected with the p400-CAT construct, we
reproducibly observed a 3-7-fold increase in CAT expression
induced by thrombin. These thrombin-stimulated levels of CAT correlated
quantitatively with thrombin induced levels of PDGF in the conditioned
media of these cells, as measured by radioreceptor assay (data not
shown).
Identification of a Thrombin Response (ThR) Element in
the PDGF B-chain Promoter
To define further the region
corresponding to the thrombin response element, we generated deletion
mutants of the 400-bp promoter region using PCR technology and the
primers described in Table 1. A schematic representation of these
constructs appears in Fig. 2A. Promoter fragments were
ligated into our reporter vector, transfected into bovine aortic EC,
and the cultures tested for the ability to respond to thrombin. As
shown in Fig. 2B, the smallest construct that retained
thrombin responsiveness was p86. Construct p43, which contained the
minimal promoter activity required for expression in these cells,
demonstrated no increased CAT expression in response to thrombin. This
observation suggested that the region spanning oligonucleotides
-86 to -44 (see Fig. 2A) was involved in
the transcriptional response to thrombin.
B binding sequence, AP2 binding sequence,
TFIID binding sequence, and the CREB binding sequence. The TINF complex
is indicated.
Interaction of SP1 and TINF with the B Region of the PDGF
B-chain Promoter
With the observation that an oligomer
corresponding to the B region formed a specific protein-DNA complex
when incubated with nuclear extracts prepared from thrombin-treated EC,
we were led to investigate further the properties of this nuclear
factor. First, we examined the kinetics of TINF appearance in the
nucleus following thrombin treatment. As visualized by EMSA, the TINF
complex was apparent in EC nuclear extracts as early as 40 min after
thrombin addition, remained at a peak level for up to 7 h, and became
undetectable by 24 h (Fig. 6). When EC were pretreated with the
protein synthesis inhibitor cycloheximide (10 µg/ml) for 30 min,
followed by 1 h with the inhibitor plus thrombin, TINF still appeared
in the nuclear extracts, indicating that de novo protein
synthesis was not required (data not shown). The rapid appearance of
this binding protein in the nucleus of EC following thrombin treatment
is consistent with a lack of requirement of new protein synthesis.
Detailed Characterization of the B
Region
Oligonucleotides containing several substitutions in the
B region were tested as competitors in an EMSA in order to identify
more specifically the DNA sequence requirements for TINF-DNA complex
formation. As shown in Fig. 8A, oligonucleotides
corresponding to the B region, ThR, and the Sp1 consensus binding site
efficiently competed with TINF in binding to the B region oligomer.
Common to all of these binding site oligomers was a CCACCC element,
which has been reported to have high affinity for Sp1-like
proteins(36, 37, 38) . Included in the B
region is also an inverted repeat of the sequence CCACCC in an ABBA
configuration (Fig. 8B). To test whether this element
may be involved in mediating thrombin responsiveness of the PDGF
B-chain promoter, a series of mutant oligonucleotides were synthesized
and tested in an EMSA. Fig. 8A shows that the B region
substitution mutant oligomers, S64-59 and S55-50, each of
which had only one end of the ABBA motif mutated but still contained a
single intact CCACCC sequence, competed with TINF, as well as the
Sp1-like proteins for binding to the B oligomer. However, binding of
these nuclear proteins to the labeled B oligonucleotide was not
inhibited by an excess of the oligomer S-ABBA, in which both the
forward and inverted repeat formed by the CCACCC elements had been
disrupted. Additionally, oligomer S610587, which contained four point
mutations within the CCACCC sequence, and oligomer S60-56, in
which the CACCC (position -60 to -56) of the B region had
been replaced with AGTTT, did not compete for TINF binding. Direct
nuclear factor binding studies, visualized in EMSA, showed that the
labeled B mutant and S610587 failed to bind TINF, as well as the lower
mobility, constitutively expressed, nuclear proteins. These results
suggest that the ABBA configuration of bases CCACCC, which constitutes
the CCACCCACC sequence, referred to as the ThR element within the PDGF
B-chain promoter B region, is responsible for the binding of both TINF
and Sp1-like proteins and that the minimum sequence required for a
thrombin-induced response is CCACCC (Fig. 9).
B, TFIID, CREB,
Sp1, or oligonucleotides flanking the B region and the B region itself,
only an excess of unlabeled oligonucleotide B and consensus sequence
Sp1 oligonucleotide were effective competitors. Moreover, recombinant
Sp1 protein bound to labeled B oligomer and yielded a band that
corresponded in electrophoretic mobility to band 1 from the profile
obtained using nuclear extract from thrombin-stimulated EC. When HeLa
cell nuclear extracts (used as a known source of Sp1) (39) were
incubated with B region oligomer, two distinct bands were observed that
had similar gel mobilities to two bands seen with thrombin-stimulated
EC nuclear extracts. These bands may correspond to the two Sp1
proteins, of 105 kDa and 95 kDa, that have been described by
others(39) .
)
We thank Drs. Donna Driscoll, J. Evan Sadler, and
Ganes Sen for critical review of this manuscript; Nandan V. Kamath and
Brian McDermott for technical support; Carol de la Motte for editorial
assistance; and Jim Lang for photographic assistance.
©1996 by The American Society for Biochemistry and Molecular Biology, Inc.
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