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(Received for publication, March 25, 1997, and in revised form, May 20, 1997)
From the Interleukin-5 (IL-5), a disulfide-linked
homodimer, can be induced to fold as a biological active monomer by
extending the loop between its third and fourth helices (Dickason,
R. R., and Huston, D. P. (1996) Nature 379, 652-655). We have designed eight monomeric IL-5 proteins to optimize
biological activity and stability of the monomer. This was achieved by
(i) inserting the joining loop at three different positions, (ii) by
introducing an additional intramolecular disulfide bridge onto these
backbones, and (iii) by creating circular permutations to fix the
position of the carboxyl-terminal helix relative to the three other
helices. The proteins dimerize with Kd values
ranging from 20 to 200 µM and are therefore monomeric at
the picomolar concentrations where they are biologically active.
Introduction of a second disulfide confers increased stability, but
this increased rigidity results in lower activity of the protein. Contrary to wild type IL-5, mutation of the Interleukin-5 (IL-5)1 is
the key cytokine involved in the differentiation and maturation of
eosinophil precursors and the activation and survival of mature
eosinophils (1-5). The association of eosinophilia with chronic
inflammatory conditions such as asthma, rhinitis, and atopic dermatitis
(6-8) indicates that blocking the action of IL-5 may provide
therapeutic benefit in these allergic disorders. Indeed, neutralizing
antibodies to IL-5 have been shown to reduce pulmonary eosinophilia,
tissue damage, and bronchial hyperactivity in animal models of asthma
(9-11). Experiments with mice in which the IL-5 gene has been deleted
have further validated the central role of IL-5 in eosinophilia
(12).
IL-5 was originally identified from a murine T cell culture supernatant
(13) and was shown to be a disulfide-linked homodimer consisting of two
glycosylated subunits (14). Glycosylation is not required for
activity, as the human recombinant protein produced in
Escherichia coli is fully active (15). The three-dimensional crystal structure of the E. coli-derived protein showed that
the disulfide-linked dimer forms two domains, each containing four helices which pack with the cytokine fold (16). The cytokine fold is
common to many other cytokines including granulocyte-macrophage colony
stimulating factor (GM-CSF) and growth hormone (17). However, all the
other cytokines are monomeric. The dimeric topology of IL-5 is unique
in that each four helix bundle consists of three helices from one
subunit, whereas the fourth is provided by the other subunit.
IL-5 binds to a heterodimeric receptor complex composed of an Asymmetric mutagenesis of single chain IL-5 molecules suggests that a
single IL-5 domain suffices for biological activity but that optimal
binding of the We have shown that in single chain dimers of IL-5 only a single copy of
the receptor Unless otherwise stated, all chemicals were
purchased from Sigma. Enzymes were from New England Biolabs, and
chromatographic material was from Pharmacia Biotech Inc.
IL-5 constructs were made using a synthetic gene coding
for the mature sequence of human IL-5 (35) which begins with sequence encoding MTEIP ... , where T is Thr22 of the human
IL-5 precursor. Residue numbering begins with the amino-terminal
methionine. The single chain dimer was constructed by the insertion of
a Gly residue between two copies of the synthetic human IL-5 gene using
overlap PCR. PCR products corresponding to the single chain length were
subcloned into pLT4ex4 and expressed as described previously
(15). Point mutations were inserted into one IL-5 gene of the single
chain by using previously mutated IL-5 genes as template in the second
of the two monomer PCRs.
Monomers were constructed by inserting sequences encoding the sequence
(S/C)PPTEPTS, which corresponds to residues Ser105 to
Ser112 of GM-CSF, just after Gln81 (IL-5.1 and
5.2), just following Lys84 (IL-5.3 and 5.4), or in place of
Lys82-Lys84 (IL-5.5 and 5.6). In the even
numbered constructs (IL-5.2, IL-5.4, and IL-5.6), two cysteine residues
have been inserted to allow a potentially stabilizing disulfide bond to
form between the first residues of the insert sequence and a cysteine
introduced by an I112C mutation at the carboxyl-terminal end of the
protein. Insertion mutants and circular permutations were made by
megaprimer and overlap extension PCR, respectively. In all cases, the
genes were inserted into NcoI/HindIII-digested
pET23d (Novagen) and expressed in E. coli BL21(DE3).
After the first TF-1 proliferation bioassay, the IL-5.3 backbone was
identified as producing the most active protein and the mutants IL-5.3,
IL-5.4, IL-5.cT29, and IL-5.cT63, which all had the loop inserted after
Lys84, were subsequently fermented in 5-liter fermentors
for further characterization. The proteins were purified from inclusion
bodies and renatured as described for the recombinant wild type protein (15, 36). Renaturation was also carried out by rapid dilution of the
purified protein in 6 M guanidine/HCl into 0.1 M Tris/HCl, pH 8.5.
Disulfide bond formation was
determined by the analysis of the amino acid composition of the
proteins after alkylation of reduced and oxidized samples and
derivatization of free Cys residues with dithiodipropionic acid (37).
The proteins were hydrolyzed at 112 °C for 24 h, and the
analysis was carried out using the Waters AccQ.Tag Chemistry
Package.
The proteins were analyzed by gel permeation chromatography
using a SMART system equipped with a Superdex 75 column equilibrated with 0.1 M Tris/HCl, pH 8.5, containing 0.15 M
NaCl. The column was calibrated with standards of known molecular
weights, as well as recombinant IL-5 and GM-CSF. 50 µl were applied
at concentrations between 35 and 150 µg/ml.
Sedimentation equilibrium analytical ultracentrifugation of native
IL-5, the various IL-5 mutants, and GM-CSF was performed using a
Beckman XL-A (Palo Alto, CA) centrifuge with six-channel 12-mm
charcoal-filled epon centerpieces. Runs were performed at 25,000, 30,000, 32,500 and 35,000 rpm at 4 °C with scans taken at 220 or 280 nm at 1-h intervals. Equilibrium was judged to be achieved by the
absence of change between plots of several successive scans after
approximately 20 h. 100 µl of each sample in 100 mM Tris/HCl, pH 8.0, was centrifuged against 120 µl of the equivalent buffer blank. Solvent density was determined empirically at 4 °C using a Mettler DA-110 density/specific gravity meter calibrated against water. The partial specific volume of each protein was calculated using the method of Cohn and Edsall (38). Temperature differentials were incorporated using the appropriate equation modified
from values of each amino acid at 25 °C (39). Data sets were
obtained as radial distance versus absorbance and later converted to concentration units using an empirically derived extinction coefficient. Raw data were analyzed by the Beckman/Microcal Origin non-linear regression software package using multiple iterations of the Marquardt-Levenberg algorithm (40) for parameter estimation or
by global fitting routines kindly provided by the National Analytical
Ultracentrifuge Facility at Storrs, CT.
Circular dichroism (CD)
spectral analysis was performed using an Aviv model 62DS CD
spectropolarimeter. Proteins were scanned repetitively in 0.1-cm quartz
cuvettes from 199 to 340 nm in 1-nm wavelength increments. Ellipticity
was converted to molar ellipticity for comparisons.
Thermal transitions were analyzed with the CD
instrument described above by monitoring the proteins at 222 nm over a
temperature range of 5-95 °C. Data were collected in 1 °C
increments with a slope of 10 °C/min. The half-point of the thermal
transition, T1/2, was determined by iterative
fitting using the Boltzmann equation. Data were fitted to the following
thermodynamic model (see Equations 1 and 2).
The mutants were assayed for
activity in two bioassays, induction of TF-1 proliferation and
eosinophil activation as measured by adhesion to recombinant VCAM-1
(41). Their affinity for receptor binding was measured in equilibrium
competition binding assays with recombinant Protein Design Increasing the length of the loop between
helices C and D of IL-5 to resemble the loop of GM-CSF allows IL-5
helix D to fold back onto its parent monomer
(Fig. 1). The amino acid sequences used
for creating the monomeric IL-5s are depicted schematically in
Fig. 2. In each case 8 amino acids,
corresponding to the loop separating helices C and D in GM-CSF, were
introduced into the analogous position in IL-5. The sequence
(S/C)PPTEPTS was inserted just after Gln81 (IL-5.1 and
IL-5.2), following Lys84 (IL-5.3 and IL-5.4) or in place of
Lys82-Lys84 (IL-5.5 and IL-5.6). In the even
numbered constructs (IL-5.2, IL-5.4, and IL-5.6) two cysteine residues
have been inserted to allow a potentially stabilizing disulfide bond to
form between the first residue of the insert sequence and a cysteine
introduced by an I112C mutation at the carboxyl-terminal end of the
protein. Circular permutations were made as an alternative to the
cystine bridge in an attempt to increase protein stability by
restricting movement of helix D. The new amino termini were introduced
at Thr29 and Thr63, residues located on exposed
loops at regions known not to be involved in receptor binding (24, 25).
Finally, we attempted to completely eliminate any possibility of
dimerization by mutating the polar residues Thr42 and
Asn43 that are involved in hydrogen bonding at the dimeric
interface to the acidic Glu to create electrostatic repulsion.
Fig. 1. Molecular models of IL-5, GM-CFS, and monomeric IL-5. A, super-position of GM-CSF onto one monomeric domain of IL-5. GM-CSF is depicted in green, and the IL-5 subunits are shown in light and dark blue. The intermolecular disulfide bonds of IL-5 are shown in yellow, and the intramolecular disulfides of GM-CSF in red. B, model of the monomeric IL-5.4 construct, which is based on the IL-5.3 backbone with the eight amino acid loop (shown in green) inserted after Lys84. The disulfide linking Cys43 to Cys83 and the additional disulfide created by the introduction of a Cys as the first residue of the loop and the I112C mutation are shown in red. [View Larger Version of this Image (60K GIF file)] Fig. 2. Schematic representation of the monomeric constructs. The helices A, B, and C are shown as open boxes, and helix D as a shaded box. The c contact residue,
Glu12, is shown in bold. The positions at which
the loop has been introduced are indicated.
[View Larger Version of this Image (23K GIF file)] Protein Characterization Wild type IL-5 is expressed to 15%
total protein in E. coli. The monomeric constructs expressed
to approximately 40% total protein as shown in
Fig. 3. They were easily purified and
renatured from inclusion bodies giving yields of 8 mg/g E. coli cells compared with 1 mg/g for wild type IL-5. In fact, they
could be renatured by a simple dilution from the guanidine denaturant,
a process which was not feasible for the wild type
dimer.2 However, the yield
using this procedure was lower than the longer protocol for the dimeric
protein, which was therefore used for scale up purifications. The
introduction of the charge reversal mutation at the
Fig. 3. SDS-polyacrylamide gel electrophoresis analysis of the expression of monomers compared with wild type IL-5 in E. coli. Lane 1, protein standards, molecular masses indicated; lane 2, wild type IL-5; lane 3, IL-5(E12K); lane 4, IL-5.3; lane 5, IL-5.cT29; lane 6, IL-5.cT29(E12K); lane 7, IL-5.cT63; lane 8, IL-5.cT63(E12K). [View Larger Version of this Image (75K GIF file)]
Correct folding of the purified proteins was established by CD
spectroscopy. CD spectra (200-300 nm) indicated that the helical content of all the monomeric constructs was very similar to the dimeric
protein (Fig. 4). Introduction of the
charge reversal mutation, corresponding to E12K in the IL-5 sequence,
into the circularly permutated constructs does not appear to perturb
the overall secondary structure elements, as the spectrum for
IL-5.cT63(E12K) overlays well with the other spectra as shown in Fig.
4.
Fig. 4. Circular dichroism spectra of IL-5 constructs. The spectra are represented as molar ellipticity (cm2 deg/dmol) versus wavelength (nm). Averaged spectra from 10 scans each of wild type IL-5, IL-5.3, IL-5.4, IL-5.cT29, and IL-5.cT63 are overlaid as discrete solid lines (---). Averaged spectra from 10 scans of IL-5.cT63(E12K) are presented as open circles ( ) for comparison.
[View Larger Version of this Image (14K GIF file)]
Disulfide bond formation was measured by analysis of amino acid composition. All of the constructs had one disulfide bond. The three constructs, IL-5.2, IL-5.4 and IL-5.6, which had an additional pair of Cys residues introduced with the aim of forming a disulfide bridge analogous to the second disulfide bond in GM-CSF, were found to effectively contain this second disulfide. Nonreducing SDS-polyacrylamide gel electrophoresis demonstrated that there was no formation of inter-molecular disulfide bonds (results not shown). The quaternary state of the IL-5 constructs was analyzed by size-exclusion chromatography and analytical ultracentrifugation. When subjected to gel filtration at concentrations around 1 mg/ml (approximately 70 µM), the proteins eluted at the volume observed for IL-5 indicating that they were associating as dimers (data not shown). However, at concentrations of 150 µg/ml or less (<10 µM), the proteins co-eluted with GM-CSF, indicating that a weak monomer-dimer self-association was occurring at concentrations well above the concentrations at which IL-5 exhibits biological activity. To further refine these observations, analytical centrifugation was employed to determine dissociation constants (Kd) for these interactions (Table I). The insertion of the loop after Gln81 in IL-5.1 and IL-5.2 produced proteins that had the least tendency to dimerize, since they had Kd values of 400 µM, whereas the other monomers analyzed had dissociation constants between 20 and 60 µM. The circular permutations shared intermediate dissociation constants, IL-5.cT29 having a Kd of 200 µM and IL-5.cT63 a Kd of 67 µM. In each case the Kd for dimerization is far greater than the concentrations at which biological activity was measured. Replacement of the polar Thr42 and Asn43 residues located at the dimer interface of wild type IL-5 with Glu did not prevent dimerization since both the single T42E and N43E mutations as well as the double T42E/N43E mutants all showed a Kd of 40 µM. This suggests that the dimerization process in these mutants may involve a difference in the quaternary packing compared with the wild type protein.
The stability of four monomeric constructs determined by thermal denaturation followed by CD showed that the self-folding monomers were significantly less stable that the parent IL-5 dimer and GM-CSF monomer. The T1/2 values for IL-5.3, IL-5.cT29, and IL-5.cT63 were 58.8, 51.6, and 55.9 °C respectively, compared with 71.1 °C for IL-5 and 71.4 °C for GM-CSF. However, the introduction of the second disulfide inferred increased stability to the protein, as demonstrated by the T1/2 of 64.9 °C obtained for IL-5.4. Biological ActivityThe single chain protein was almost
equipotent to wild type IL-5 in the TF-1 proliferation assay, where it
had an EC50 of 2.8 pM compared with 1.6 pM for the wild type. Introduction of a single R90A or
E109A mutation at positions corresponding to the second subunit gave
EC50 values of 3.2 and 2.7 pM, respectively. When these mutations were made in the wild type protein, where by
definition both copies of the amino acid residue were mutated, there
was significant loss of potency with EC50 values for the induction of TF-1 proliferation of 60 pM for R90A and 200 pM for E109. (Fig. 5).
Fig. 5. Proliferation of the human erythroleukemic cell line TF-1 by IL-5 single chain dimer containing the R90A and E109A single copy mutations. The abilities of wild type IL-5 ( ), R90A in wild type IL-5 ( ), E109A in wild type IL-5 ( ), R90A in the single chain dimer ( ), and E109A in the single chain dimer ( ) to
cause proliferation of TF-1 cells are shown. The data shown are taken
from a single experiment, but they are typical of those seen in three
separate experiments.
[View Larger Version of this Image (27K GIF file)]
The insertion of the 8 amino acid loop that enabled IL-5 to fold as a monomer resulted in proteins that elicit full biological activity in TF-1 proliferation, with a single exception, IL-5.cT29, where the protein was a partial agonist in the range of concentrations tested. The results are summarized in Table I. The most favorable position for insertion of the loop was after Lys84. IL-5.3 showed the highest activity in the TF-1 proliferation assay, with an 11-fold decrease compared with the wild type. This backbone was therefore chosen for the design of the circular permutations. The effects of inserting the loop after Gln81 or by replacing Lys82-Lys84 are small with respect to biological activity, as IL-5.1 and IL-5.5 had 17- and 44-fold increases in EC50 values in the TF-1 proliferation assay, respectively. Although the creation of the second disulfide bond was favorable in terms of stability, these more rigid conformations were not advantageous with respect to bio-activity; IL-5.2, IL-5.4, and IL-5.6 had EC50 values 3-8-fold higher than their parent constructs. The circular permutations similarly were active in this assay, where IL-5.cT63 had an EC50 33-fold higher than the wild type, but IL-5.cT29 was consistently only a partial agonist. Mutation of the polar residues Gln42 and Thr43 to Glu into the IL-5.5 backbone had little effect in this assay. Eosinophil activation was used as a second in vitro bioassay. The monomers were more active in their capacity to induce eosinophil adhesion when compared with wild type IL-5 than in the TF-1 proliferation assay. IL-5.3 had an EC50 of 5.3 nM and is only 4-fold less active than wild type IL-5, which has an EC50 of 1.3 pM, and again the second disulfide introduced in IL-5.4 results in an approximately 4-fold drop in activity, with an EC50 of 20 pM. Both circular permutation constructs exhibited full agonist activity in the induction of eosinophil adhesion, and in fact IL-5.cT63, with an EC50 of 3.4 pM, was almost as potent as the wild type protein. Receptor binding assays showed that the reduction in affinity of the
monomeric proteins for either the recombinant The introduction of the Fig. 6. TF-1 proliferation of the circular permutated constructs. A, the abilities of wild type IL-5 ( ),
IL-5.cT29 ( ), and IL-5.cT29(E12K) ( ) to cause proliferation of
TF-1 cells. B, TF-1 proliferation of wild type IL-5 ( ),
IL-5.cT63 ( ) and IL-5.cT63(E12K) ( ). The data are shown in Table
I and are the results of three separate experiments.
[View Larger Version of this Image (26K GIF file)] Fig. 7. Eosinophil activation induced by the circular permutated constructs. A, the abilities of wild type IL-5 ( ), IL-5.cT29 ( ), and IL-5.cT29(E12K) ( ) to activate
eosinophils as measured by adhesion to recombinant VCAM-1.
B, eosinophil adhesion of wild type IL-5 ( ), IL-5.cT63
( ) and IL-5.cT63(E12K) ( ). The data are shown in Table I and are
the results of three separate experiments.
[View Larger Version of this Image (23K GIF file)]
The residues of IL-5 contributing to binding the specific
Several lines of evidence have indicated that both four helix bundle
domains may be not essential for bio-activity. First, the IL-5 has been induced to fold with a monomeric topology by extension of
the loop linking the third and fourth helices in a manner analogous to
GM-CSF (34) as depicted in the model shown in Fig. 1. However, this
protein was shown to have a 15-fold lower activity as measured by TF-1
proliferation compared with wild type dimeric IL-5, and little is known
about the stability and oligomerization of the monomeric protein. We
were interested to see if a fully active monomer could be formed by
improving the packing of the fourth helix in the IL-5 monomer. The
fourth helix carries one of the essential It is obvious from the previously published report and this work that
the principal factor required to achieve activation of the IL-5
receptor complex is the packing of the four helices into the
"cytokine fold" so that the The receptor binding assays may also reflect the lower stability of the
monomeric proteins, presumably due to a sub-optimal packing. Although
their overall conformation resembles that of IL-5 as demonstrated by
circular dichroism, the monomers are over 100 times less efficient at
competing for 125I-IL-5 (with a single exception, IL-5.cT63
which has a 70-fold increase in IC50) on both the By introducing the charge reversal E12K into the IL-5 sequence, we have
produced a potent antagonist of both TF-1 proliferation and eosinophil
adhesion (30), but we were hampered in our attempts to continue our
studies in animal models of allergic disorders by the difficulty of
producing the protein in E. coli. Attempts to express this
mutant at a high level in a baculovirus expression system were
similarly unsuccessful. We were therefore interested in using the
monomeric scaffolds, in particular the circular permutations where the
Glu residue in question was no longer proximal to the amino terminus of
the sequence, as a means of obtaining large amounts of the antagonist.
Although the permutated proteins possess the characteristics necessary
to confer IL-5 activity, introduction of this mutation surprisingly did
not abolish activity. We had previously made the observation that the
E12K mutation in the wild type protein, while creating a potent
antagonist against IL-5 induced TF-1 proliferation and eosinophil
adhesion, retained the ability to induce eosinophil survival, albeit
with a 50,000-fold reduction in potency (30). This suggested that in
the eosinophil there may be separate signaling pathways involved in
adhesion and survival. Moreover, there may be other residues that are
involved in activating and triggering the We believe that these results support the hypothesis that the Glu
residue on the first helix is not the only point of contact required
for While not having elucidated why IL-5 is the only four helix bundle
cytokine that is dimeric, we believe that the characterization of the
active monomeric constructs described here support the hypothesis that
a change in splicing pattern between the 3rd and 4th exons probably
gave rise to the dimeric topology of IL-5 during the course of
evolution but that the gene continued to evolve so that the dimeric
configuration is thermodynamically favored over a monomeric structure.
In addition, the monomeric forms in which the amino termini have been
permutated are not rendered inactive by a charge reversal of the Glu on
helix A, the only * The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
To whom correspondence should be addressed: Geneva Biomedical
Research Institute, Glaxco Wellcome Research and Development S. A. 14 Chemin des Aulx, 1228 Plan-les-Ouates, Geneva, Switzerland. Tel.:
41-22-706-98-00; Fax: 41-22-794-69-65; E-mail:
aep6830{at}ggr.co.uk.
1 The abbreviations used are: IL-5, interleukin-5; IL-3, interleukin-3; GM-CSF, granulocyte-macrophage colony stimulating factor; PCR, polymerase chain reaction. 2 A. Proudfoot, unpublished results. We thank Edith Magnenat for amino acid analyses and Dr. Roberto Solari and Dr. Michael Luther for helpful discussions.
©1997 by The American Society for Biochemistry and Molecular Biology, Inc. This article has been cited by other articles:
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