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Volume 272, Number 38,
Issue of September 19, 1997
pp. 23880-23886
©1997 by The American Society for Biochemistry and Molecular Biology, Inc.
Rat Brain p64H1, Expression of a New Member of the p64 Chloride
Channel Protein Family in Endoplasmic Reticulum*
(Received for publication, February 18, 1997, and in revised form, May 12, 1997)
Rory R.
Duncan
,
Paul K.
Westwood
,
Alan
Boyd
and
Richard H.
Ashley
From the Department of Biochemistry, University of Edinburgh,
Edinburgh EH8 9XD, United Kingdom
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
FOOTNOTES
ACKNOWLEDGEMENTS
REFERENCES
ABSTRACT
Many plasma membrane Cl
channels have been cloned, including the cystic fibrosis transmembrane
conductance regulator and several members of the voltage-gated ClC
family. In contrast, very little is known about the molecular identity
of intracellular Cl channels. We used a polymerase chain
reaction-based approach to identify candidate genes in mammalian brain
and cloned the cDNA corresponding to rat brain p64H1.
This encoded a microsomal membrane protein of predicted
Mr 28,635 homologous to the putative intracellular bovine kidney Cl channel p64. In
situ mRNA hybridization histochemistry showed marked
expression in hippocampus and cerebellum, and in vitro expression revealed a large cytoplasmic domain, one membrane-spanning segment, and a small nonglycosylated N-terminal luminal domain. The
predicted protein contained consensus phosphorylation sites for protein
kinase C and protein kinase A, and protein kinase C-mediated
phosphorylation increased the Mr of p64H1 to
~43,000, characteristic of the native protein in Western blots.
Recombinant p64H1 was immunolocalized to the endoplasmic reticulum of
human embryonic kidney 293 and HT-4 cells, and incorporation of human embryonic kidney 293 endoplasmic reticulum vesicles into planar lipid
bilayers gave rise to intermediate conductance, outwardly rectifying
anion channels. Although p64H1 is the first intracellular Cl channel component or regulator to be identified in
brain, Northern blotting revealed transcripts in many other rat
tissues. This suggests that p64H1 may contribute widely to
intracellular Cl transport.
INTRODUCTION
Ion channel reconstitution followed by single-channel recording
and analysis has shown that intracellular organelles contain numerous
ion channels. These include channels in the endoplasmic reticulum
(ER)1 and sarcoplasmic
reticulum (1-8) and ion channels in mitochondria (9-11), secretory
vesicles (12, 13), and synaptic vesicles (14). Although a concerted
effort to understand the molecular basis of intracellular ion transport
has revealed the molecular identities of several intracellular cation
channels, intracellular Cl channels are much less well
characterized. Nevertheless, it has been speculated that anion channels
may help to regulate organelle volume or conduct counterions to balance
intracellular Ca2+ uptake and release. Such channels could
therefore have important roles in many cellular processes.
Experimental work by Landry et al. (15) establishes a role
for the protein p64 in intracellular Cl transport.
Briefly, Landry et al. (15) identify specific ligands for a
bovine kidney microsomal Cl transporter and purified
candidate proteins, including the 64-kDa protein p64, using drug
affinity chromatography (16). Reconstitution of partially purified p64
into planar lipid bilayers revealed anion channel activity (16), and
incorporation into proteoliposomes conferred a 36Cl
permeability that was abolished by anti-p64 antibodies (17). p64 cDNA was cloned (17) and expressed in
Xenopus oocytes, where the recombinant protein was localized
to intracellular membranes. Taken as a whole, this work strongly
suggested that p64 was a component of an intracellular Cl
channel, and it provided the impetus for the present study.
Genes homologous to bovine p64 are expressed in rat tissues,
including brain (18). In addition, p64-expressed sequence tags have
been identified in several tissues during the Human Genome Mapping
Project. In an attempt to identify p64-related intracellular Cl channel proteins in mammalian brain, we used a
PCR-based approach to clone and functionally express a rat brain
homologue of p64, p64H1. This is the
first putative intracellular Cl channel component to be
identified in brain, and we suggest that p64- and
p64H1-related genes encode a family of proteins associated with intracellular Cl transport.
EXPERIMENTAL PROCEDURES
RT-PCR and cDNA Library Screening
RT-PCR was carried
out on whole rat brain total RNA (19) using two fully degenerate
oligonucleotide primers (18) based on the amino acid sequence of bovine
kidney p64 (Ref. 17; GenBankTM accession number L16547). We
used the random primer method to label a 346-bp EcoRI
fragment of BS2, a partial cDNA clone generated by this procedure,
with [ -32P]dCTP (3000 Ci/mmol, Amersham). This probe
was used to screen an oligo(dT)-primed rat olfactory bulb ZAP II
cDNA library (Stratagene) at moderate stringency (6 × SSPE,
5 × Denhardt's solution, 1% SDS, 100 µg/ml salmon sperm DNA,
65 °C). We isolated 13 clones after washing the filters at moderate
stringency (final wash: 2 × SSPE, 65 °C, 30 min), and phagemid
DNA was rescued according to the manufacturer's instructions. DNA
sequencing was carried out using the Sequenase II system
(Amersham).
Circle (or Concatemer) Rapid Amplification of cDNA Ends-PCR
(20)
Poly(A)+ RNA was purified from rat brain total
RNA using Poly(A)+ Quick columns (Stratagene). 10 pmol of
an antisense oligonucleotide (5 -CGGTGGTGACACTGAACACGACTCC-3 , based on
sequence analysis of the longest cDNA clone) were used to direct
first-strand cDNA synthesis from 1 µg of poly(A)+ RNA
by 10 units of Superscript II RNase H reverse
transcriptase (Life Technologies Inc.). The RNA template was destroyed
by alkaline hydrolysis, and the cDNA was circularized by incubation
with 10 units of T4 RNA ligase (NEB). This was used as a template in a
PCR with the following oligonucleotides: forward primer,
5 -TGCAGTTTCCTATGCTCTCACCATC-3 ; reverse primer,
5 -TCACAGAGGCTCTTCATGATCCTTT-3 . The PCR product (cRI) was ligated to
the T/A cloning vector pGEM-T (Promega) and sequenced (Sequenase II,
Amersham). cRI extended an additional 120 bp farther upstream from the
original RT-PCR clone, and this was used to screen a second rat whole
brain cDNA library ( gt10 5 STRETCH,
CLONTECH) under conditions identical to those
previously described. The 1.9-kb insert from the newly isolated clone
(p64H1) was PCR-amplified using gt10 insert-flanking primers (forward primer, 5 -AGCAAGTTCAGCCTGGTTAAGT-3 ; reverse primer,
5 -TTATGAGTATTTCTTCCAGGG-3 ); and a polymerase mixture of
Taq and Pwo (Extend, Boehringer Mannheim). The
final product was ligated to pTAg (R&D Systems).
Northern Hybridization
3 µg of tissue-specific
poly(A)+ RNAs purified from total tissue RNAs were
electrophoresed in a 1% (w/v) agarose-formaldehyde gel, transferred to
Hybond-N (Amersham), and cross-linked in a Stratalinker UV oven
(Stratagene). We also used a commercial rat multiple tissue Northern
blot (CLONTECH). A 346-bp EcoRI
restriction fragment of BS2 labeled with [ -32P]dCTP,
as described earlier, was hybridized to the membranes and washed under
conditions of high (final wash: 0.2 × SSPE, 0.1% (w/v) SDS,
65 °C for 10 min) or moderate (final wash: 2 × SSPE, 65 °C
for 30 min) stringency and exposed to radiographic film for 24 h.
In Situ mRNA Hybridization
Freshly dissected brains
from adult Harlan Sprague Dawley rats were slowly frozen on dry ice and
mounted on the cutting block of a cryostat using Tissue Tek (Miles
Laboratories). 15-20-µm sections were cut at 14 °C and
thaw-mounted on poly-L-lysine-coated slides, fixed by
immersion for 5 min in ice-cold 4% (w/v) phosphate-buffered paraformaldehyde, rinsed in 1 × PBS, and dehydrated in 70%
(v/v), 80% (v/v), and 95% (v/v) ethanol. Following fixation, the
sections were rehydrated in 1 × PBS and immersed for 10 min at
room temperature in a solution containing 0.25% (v/v) acetic anhydride
in 0.1 M triethanolamine hydrochloride (pH 8.0), 0.9%
(w/v) NaCl (21). After dehydration through graded alcohols, the
sections were dipped in chloroform for 5 min then dehydrated again. A
probe was synthesized by end-labeling 5 ng of a 45-mer antisense
oligonucleotide
(5 -CCTTTTCAGGTCAACGGTGGTGACACTGAACACGACTCCTTTGAG-3 ) with -35S-dATP (1200 Ci/mmol, 12.5 mCi/µl,
Amersham) using terminal deoxynucleotidyltransferase (Life
Technologies) according to the manufacturer's instructions. Labeling
was confirmed by electrophoresing an aliquot in a 6% (w/v)
polyacrylamide gel in the presence of 6.6 M urea. This
probe was diluted 100-fold in a hybridization buffer containing 50% (v/v) formamide, 4 × SSC, 10 mM Tris-HCl (pH 7.4), 1 mM EDTA, 10 mM dithiothreitol, 1 × Denhardt's solution, 0.25% (w/v) SDS, 10% (w/v) dextran sulfate, 5 µg/ml yeast tRNA, 200 µg/ml yeast total RNA, and 200 µg/ml salmon
sperm DNA and hybridized to the sections for 16 h at 42 °C in a
chamber humidified with 50% (v/v) formamide, 2 × SSC. The
sections were washed twice for 20 min in 2 × SSC at 22 °C then
twice for 20 min in 2 × SSC at 55 °C. They were then rinsed in
0.3 × SSC, 70% (v/v) ethanol at 22 °C and dehydrated in 95%
(v/v) ethanol before being exposed to radiographic film for 10 days. A
complementary sense 45-mer probe was used as a negative control.
In Vitro Translation
A 1.5-kb cDNA insert in pTAg (R&D
Systems) encoding the complete open reading frame of p64H1
was used to direct protein translation in a coupled in vitro
transcription/translation system (TnT, Promega). The insert contained
165 bp of 5 -UTR and ~500 bp of 3 -UTR. The reaction was initiated
from the T7 promotor of pTAg in the presence or absence of canine
pancreatic microsomes (Promega), labeling the protein with
[ -35S]methionine (0.8 mCi/ml; specific activity, 1,016 Ci/mmol, Amersham), which was used according to the manufacturer's
instructions. The translation product (5 µl or the equivalent after
treatment) was analyzed by SDS-polyacrylamide gel electrophoresis. To
treat the translation product at high pH, the microsomes were incubated on ice in 10 volumes of 100 mM
Na2CO3 (pH 11.5) for 30 min, pelleted by
centrifugation (100,000 × g for 15 min at 4 °C),
and rinsed with 10 volumes of ice-cold PBS (22) before electrophoresis. For proteolysis, 10 µl of the translation product were incubated with
proteinase K (10 mg/ml, Sigma) at 0 °C in the presence or absence of
0.1% (v/v) Triton X-100. The digestion products were analyzed by
electrophoresis in 6% (w/v) SDS-polyacrylamide gels using Tris-Tricine
SDS-polyacrylamide gel electrophoresis (23).
Mammalian Cell Culture and in Vivo Expression
HEK-293 and
HT-4 (24) cells were cultured in Dulbecco's modified Eagle's medium
supplemented with 10% (v/v) fetal bovine serum, 2 mM
L-glutamine, 2 mM sodium pyruvate, and 50 units/ml penicillin and streptomycin (Life Technologies). Cells were
exposed to humidified air supplemented with 5% (v/v) CO2
and routinely passaged between 60-70% confluency using 0.05% (w/v)
trypsin, 0.53 M EDTA. All transfections were performed
using the same cell line between passage numbers 15-25 (HEK-293) or
4-6 (HT-4). The p64H1 insert used for in vitro
translation was subcloned into the mammalian expression vector pCI
(Promega) downstream of the vector's cytomegalovirus IE promotor
sequence. Its orientation was verified by sequencing and by
demonstrating the continued ability of the construct to direct protein
synthesis from the T7 promotor in a coupled transcription/translation
system. Cells were transiently transfected in 100-mm culture dishes at
50% confluency using either 1 ml of calcium phosphate DNA precipitate
containing 20 µg of plasmid DNA prepared using standard methods or
Tfx-20 (Promega). p64H1 expression was confirmed by immunoblotting
after 48-72 h (see below). Negative control transfections were
performed in an identical manner using vector alone as a source of DNA. To analyze expressed products in planar lipid bilayers, cells were
harvested from transfected or control plates by scraping into cold
buffer containing 5 mM Tris-HCl (pH 7.4), 0.32 M sucrose, 0.1 mM
4-(2-aminoethyl)benzenesulfonyl fluoride, and 10 µg/ml trypsin
inhibitor and homogenized on ice using 25 strokes of a Teflon glass
homogenizer. The homogenates were fractionated by differential
centrifugation to yield microsomal membranes, which were either used
immediately or snap-frozen in liquid N2 and stored at
70 °C for up to 6 weeks.
Western Blotting
We previously reported the generation of a
polyclonal antiserum (Ab990) to a fusion protein containing a fragment
of p64H1 (18), and this was used to detect p64H1 after in
vitro translation. Briefly, proteins were transferred onto
Hybond-C (Amersham), and excess binding sites were blocked with 1%
(w/v) bovine serum albumin in a solution containing 10 mM
Tris-HCl (pH 7.4), 140 mM NaCl, and 0.1% (v/v) TTBS).
Membranes were exposed to polyclonal antibody (1:2000 dilution in TBS)
for 60 min, washed with TTBS, and exposed to horseradish
peroxidase-conjugated donkey anti-rabbit IgG (1:4000 dilution in TBS,
Pierce). Membranes were washed extensively with TTBS, and bound
antibody complexes were revealed by enhanced chemiluminescence detection.
Indirect Immunofluorescence
Transfected HEK-293 and HT-4
cells were grown to subconfluency on sterile glass coverslips. 48 h after transfection, the cells were washed extensively in ice-cold PBS
containing Ca2+ and Mg2+, fixed for 20 min in
ice-cold buffered paraformaldehyde, and washed again in PBS. p64H1 was
detected using a 1:50 dilution of antiserum (18) in PBS, 0.2% (v/v)
fish skin gelatin (Sigma). After extensive washing, the primary
antibody was detected using rhodamine-conjugated goat anti-rabbit IgG
second antibody (1:100 dilution in PBS, 0.2% (v/v) fish skin gelatin).
Nuclear DNA was stained using Hoechst 33258 dye, and ER membranes were
visualized using the short chain cationic dicarbocyanine
DiO-C5-(3), similar to 3 ,3 -dihexyloxacarbocyanine iodide
(25, 26). The cells were mounted and examined at magnifications of up
to × 400 under oil immersion. Images were obtained with a
Hamamatsu C5810 chilled color CCD camera using standard Nikon filter
cubes. Negative controls, using pre-immune serum from the same animal,
showed no p64H1-specific staining.
Planar Bilayer Reconstitution
Planar lipid bilayers (27)
comprising equimolar palmitoyloleoyl phosphatidylethanolamine and
palmitoyloleoyl phosphatidylserine (each 15 mg/ml, Avanti) suspended in
n-decane, were cast at room temperature across a polystyrene
partition separating two solutions containing 50 mM choline
chloride, 10 mM Tris-HCl (pH 7.4). Microsomal membrane
vesicles were added to the cis chamber (final concentration, ~1 µg of protein/ml), which was voltage-clamped relative to the trans chamber using a Biologic RK-300 patch-clamp amplifier.
Membrane vesicles were induced to fuse at 0 mV by adding 2 mM Ca2+ and 450 mM choline chloride
to the cis chamber with constant stirring (2). The contents
of the cis and trans chambers were changed by
perfusion after channel incorporation (see "Results"), and
transmembrane currents were low-pass-filtered (up to 1.0 kHz, 3
decibel point, 8-pole Bessel) and digitally recorded at various holding
potentials (sampling at 10 kHz). Previous work has suggested that
noninverted rather than inverted brain ER vesicles fuse with bilayers
(2) so that a net flux of Cl flowing cis to
trans through incorporated channels represents a negative
outward current flowing from cytoplasm to lumen. The signs of the
voltage-clamp potential (measured as cis minus
trans or cytoplasmic minus luminal potential) and the
membrane currents conform to the standard electrophysiological
convention. Current/voltage relationships were plotted after current
amplitude histogram analysis (pClamp 6, Axon Instruments) to measure
single-channel slope conductances and reversal potentials. The relative
permeabilities (P) of monovalent anions versus
monovalent cations were calculated from reversal potentials measured in
asymmetric ionic conditions (e.g. 2, 11) or by directly
fitting data to the GHK current equation (28). Junction potentials were
insignificant (11).
RESULTS
Isolation of p64H1 cDNA
p64 was identified as a
Cl channel component in bovine kidney (15-17). In this
study, we used RT-PCR and cDNA library screening to clone cDNAs
encoding p64-related Cl channels from rat brain. Sequence
analysis revealed that none of the original 13 clones isolated by this
approach (see "Experimental Procedures") contained full-length
cDNA inserts. Many of the cDNAs contained long 3 -UTR
sequences, and computer analysis predicted extensive RNA secondary
structure (Genetics Computer Group 8, University of Wisconsin). This
probably reduced the abundance of full-length p64H1
cDNAs when the original library was constructed. To overcome these
problems, we used circle (or concatemer) rapid amplification of
cDNA ends-PCR (20) to extend the partial-length cDNAs obtained
by conventional library screening toward the 5 -end of the
p64H1 transcript. This technique, briefly described under "Experimental Procedures," produced the probe cRI and, eventually, p64H1. Sequence analysis of two independent PCR clones of
p64H1 revealed 100% identity to BS2 and cRI, and the
presence of a methionine codon in a consensus region favorable for
translation, viz. GGCCATGG (29, 30). This single
potential-initiating methionine codon was followed by a 753-bp open
reading frame encoding a protein with a predicted
Mr of 28,635. The nucleotide and deduced amino acid sequences of p64H1 and p64H1 are shown in Fig.
1A. The clone also contained 165 bp of 5 -UTR (as shown). The same cDNA was obtained when another cDNA library was screened with the 5 -UTR sequence. There were two in-frame termination codons within the 5 -UTR,
and the other reading frames contained multiple termination codons (not
shown). Partial p64H1 cDNA clones obtained by screening an oligo(dT)-primed cDNA library contained unusually long 3 -UTR sequences of ~3.9 kb.
Fig. 1.
cDNA and protein sequences. A,
nucleotide and deduced amino acid sequences of p64H1.
Consensus PKC and PKA phosphorylation sites are shown by
closed and open circles, respectively, and a
predicted transmembrane domain is boxed. The
arrows indicate the PCR primers (sense and antisense) used
to clone BS2. B, predicted amino acid sequences and optimal
alignment of p64H1 and p64. Vertical lines (|),
colons, and periods indicate identical residues
and conserved and nonconserved substitutions, respectively.
C, Kyte-Doolittle hydrophobicity prediction for p64H1 and
p64 (hydrophobic regions are above the center
line). Note that p64H1 is only about half the length of p64. An
arrow indicates the hydrophobic region corresponding to the
predicted transmembrane domain of p64H1.
[View Larger Versions of these Images (41 + 39K GIF file)]
Predicted Protein Sequence and Secondary Structure
Fig.
1B shows an optimized alignment of the predicted 253 amino
acid residues of p64H1 with bovine p64. p64H1 showed 71% identity to
the C-terminal portion of p64 (which has an additional 226 N-terminal
residues) and appeared to have a single potential membrane-spanning region, which was predicted to adopt an alpha-helical conformation (31). The hydropathy profile of p64H1 closely resembled the C-terminal
half of p64 (Fig. 1C). There were no consensus
N-glycosylation sites, but p64H1 had multiple consensus
sites for phosphorylation by a variety of kinases. These included a
single protein kinase A (PKA) site and four protein kinase C (PKC)
sites (indicated in Fig. 1A). The putative transmembrane
domain was preceded by a relatively short N-terminal domain, but this
had no similarity to published cleaved signal peptide sequences, and
sequence analysis did not predict a protease cleavage site. Finally,
data base searching revealed no similarity to any other protein apart
from bovine p64 and other p64-related proteins.
Distribution of p64H1 mRNA in Brain and Other
Tissues
Northern blot analysis at moderate stringency using a
346-bp probe derived from p64H1 cDNA revealed three
transcripts of approximately 1.9 kb, 4.8 kb, and 6.5 kb in samples from
whole rat brain (Fig. 2A). At
higher stringency, the p64H1 transcript hybridized
exclusively to the 4.8-kb species (Fig. 2B). The 1.9-kb and
6.5-kb transcripts may represent related members of a gene family or
result from alternative mRNA splicing. The 4.8-kb transcript was
detected in RNA from several rat tissues, indicating that
p64H1 is widely expressed (Fig. 2B). Based on
these results, we further localized p64H1 expression in rat
brain by in situ mRNA hybridization. Marked expression
was observed in the cerebellum, hippocampus, and dentate gyrus, and
moderate expression was observed in the cerebral cortex (Fig.
2C). No signal was detected in parallel experiments using a
sense probe or in samples treated with RNase (not shown).
Fig. 2.
Distribution of p64H1 mRNA.
A, Northern blot of rat whole-brain mRNA at moderate
stringency, revealing three transcripts of ~6.5, 4.8, and 1.9 kb.
B, probe of total RNA from several rat tissues
(CLONTECH) at higher stringency, showing only the
~4.8-kb species. C, in situ mRNA
hybridization using an antisense 45-mer oligonucleotide showing strong
hybridization in cerebellum (Cb), hippocampus
(Hi), and dentate gyrus (Dg) and moderate signals in cerebral cortex.
[View Larger Version of this Image (93K GIF file)]
In Vitro Expression, Membrane Topology, and
Phosphorylation
We expressed p64H1 in vitro to confirm
the location of the initiating methionine and to delineate the protein
membrane topology. The Mr of p64H1 was unaltered
in the presence of canine pancreatic microsomal membranes (Fig.
3A), consistent with the lack
of predicted consensus glycosylation sites. Microsomes containing
recombinant p64H1 were incubated at high pH to lyse the membrane
vesicles and dissociate peripheral membrane proteins. This treatment
failed to dissociate the translation product (Fig. 3A,
lane 4), consistent with an integral membrane protein (32,
33). Intact microsomes containing recombinant p64H1 were also exposed
to proteinase K to determine how much of the protein was accessible to
an extravesicular protease. As shown in Fig. 3B, this
reduced the apparent Mr of the in
vitro translation product by ~27,000, whereas solubilization of
the microsomal membranes with 0.1% (v/v) Triton X-100 (not shown)
allowed complete digestion. The bands containing unincorporated label
are an artifact of the Tris-Tricine gels used to resolve the low
Mr (~6,000) peptide. Finally, we demonstrated that
PKC phosphorylated p64H1 in vitro. This increased the
apparent Mr of the protein by up to ~10,000
(Fig. 3C), with a ladder of phosphorylated proteins
consistent with multiple phosphorylation states (four PKC sites could
theoretically give rise to 42 1 = 15 different
phosphoproteins).
Fig. 3.
In vitro translation of p64H1.
A, autoradiogram of
[ -35S]methionine-labeled translation products.
Lane 1, no microsomes; lane 2, with microsomes;
lane 3, microsomes pelleted by centrifugation at
100,000 × g; lane 4, microsomes treated at
high pH. The label indicates the apparent
Mr of the protein band. B, treatment
of an aliquot from the same experiment with proteinase K. Lane
1, no treatment; lane 2, proteinase K. The
arrows show the position of the Mr
markers carbonic anhydrase (29) and aprotinin
(6.5). The large, diffuse bands are artefacts (see text).
C, Western blot showing that phosphorylation of the
translation product by PKC increases the apparent
Mr. The arrows show the position of the Mr markers ovalbumin (45) and
carbonic anhydrase (29). The apparent
Mr of p64H1 increases to a maximum of
~43,000. D, schematic illustration showing the predicted
membrane topology of p64H1. The Mr labels refer
to the predicted Mr values of the cytoplasmic domain (22.7 kDa) and the remainder of the protein,
which includes the ER luminal and membrane domains (6.2 kDa).
[View Larger Version of this Image (37K GIF file)]
Localization of Expressed p64H1 to the ER
To determine the
cellular location of p64H1, we transiently transfected HEK-293 cells
and the mouse neuronal cell line HT-4 with an expression vector
containing p64H1. We detected p64H1 with an apparent
Mr of ~33,000 after 48 h using an
anti-p64H1 polyclonal antiserum (Ab990). The protein was localized to
the P3 membrane fraction, which is known to be enriched in ER but also
contains other membranes including Golgi and plasma membranes. p64H1
was not detected in the P1 or P2 fractions corresponding to unbroken
cells and nuclear membranes (P1) or mitochondria (P2), and it was
absent in mock-transfected cells. Its intracellular localization was
confirmed by indirect immunofluorescence. As before, p64H1 could be
detected 48 h post-transfection, and it appeared to be localized
to the ER, with characteristic staining of the outer nuclear membrane
and staining of membrane-bound organelles extending toward, but not
including, the plasma membrane. It was absent in
dummy-transfected cells. In the triple-stained cells in Fig.
4, where the ER of
p64H1-transfected HT-4 cells was visualized using
DiO-C5-(3) (25, 26), p64H1 is clearly localized to ER membranes.
Fig. 4.
Immunolocalization of recombinant protein.
A, nuclear DNA of HT-4 cells stained with Hoechst 33258 dye.
B, ER of the same cells stained with fluorescent
DiO-C5-(3) (green); the arrow indicates typical perinuclear ER staining. C,
rhodamine-conjugated fluorescence (red) corresponding to
recombinant p64H1. Note the characteristic perinuclear ER distribution.
D, superimposition of panels B and C
demonstrating colocalization of recombinant p64H1 and ER membranes
(yellow). Scale: bar, 2 µm.
[View Larger Version of this Image (121K GIF file)]
Single-channel Recording
P3 microsomal membrane vesicles from
p64H1-transfected and mock-transfected HEK-293 cells were incorporated
into voltage-clamped planar lipid bilayers in the presence of choline
chloride to select for Cl channels (1, 2, 11). The
presence of p64H1 in the transfected samples and its absence in
controls was confirmed by Western blotting. Anion channels similar to
those illustrated in Fig. 5A
were obtained from each of seven independent transfections but not from
five mock-transfected control preparations. Like p64 (16), the channels were unaffected by indanyloxyacetic acid 94 (up to 50 µM
cis and trans), and they were not blocked by
5-nitro-2-(3-phenylpropylamino)benzoic acid or DIDS (up to 50 µM). The channels showed no obvious voltage-dependence or
rectification until perfusion was carried out to give more physiological ionic conditions, viz. 10 mM
choline chloride cis (presumed "cytoplasmic," see
"Experimental Procedures") and 100 mM choline chloride
trans (extracytoplasmic, both solutions buffered to a pH of
7.4 with 10 mM Tris-HCl). Under these conditions, the channels showed mild outward rectification (Fig. 5B). The
single-channel reversal potential shifted to less negative values in
each of four experiments where cis [choline chloride] was
increased to 50 mM, but the channels were only poorly
selective for anions versus cations. In fusion conditions
(450:50 mM choline chloride), PCl /Pcholine
was 3.1 ± 0.7, mean ± S.D., n = 16 experiments from seven independent transfections (not corrected for
ionic activities). In symmetric 50 mM choline chloride
experiments, the channels had a slope conductance of 43 ± 12 picosiemens, n = 3).
Fig. 5.
Ion channel reconstitution. A,
single-channel recording at a holding potential of 60 mV
(cis-trans) after incorporation of
p64H1-transfected HEK-293 microsomal membrane vesicles into a voltage-clamped planar bilayer in the presence of 450 versus 50 mM choline chloride (cis versus
trans). The closed levels are shown (dotted lines), and
downward deflections represent net Cl flux cis
to trans low-pass-filtered at 50 Hz. B,
current/voltage relationship from seven experiments with 10 versus 100 mM choline chloride (cis versus
trans). The bars represent ± S.D.
(n = 4-7), and the continuous line is a best fit to
the GHK current equation (PCl/PCholine = 1.9). The
arrow shows the mean reversal potential (4.6 ± 3.3 mV,
mean ± S.D., n = 4) obtained after increasing
cis choline chloride from 10 to 50 mM (this
reversal potential corresponds to a calculated mean
PCl/PCholine of 1.8).
[View Larger Version of this Image (23K GIF file)]
DISCUSSION
The newly isolated rat brain cDNA, p64H1, encodes a
homologue of the putative bovine kidney Cl channel p64.
Like p64H1, the cDNA encoding bovine p64 includes an
unusually long (~5 kb) 3 -UTR (17). Computer predictions of the novel
protein membrane topology and in vitro translation experiments showing the pattern of protease protection in the presence
of microsomal membranes indicate that p64H1 has a large (Mr ~25,000) C-terminal cytoplasmic domain, a
single transmembrane domain, and a small intraluminal
(Mr ~5,000) domain (Fig. 3D). This
topology would of course be conserved regardless of an ER, secretory
vesicle, or plasma membrane location for p64H1, but Western blotting of
the native protein in subcellular fractions from rat brain (18),
together with immunoblotting and indirect immunofluorescence studies on
transiently transfected HEK-293 and HT-4 cells, indicate that native
and recombinant p64H1 are intracellular membrane proteins localized to
the ER. The similarities between p64 and p64H1 raise the possibility of
a family of homologous genes, possibly with alternative mRNA
splicing (see low stringency Northern blots, Fig. 2A).
Although p64 was predicted to have up to four transmembrane domains
(17), including two within the C-terminal sequence noted to be highly
homologous to p64H1, our in vitro translation experiments
suggest that this topology is unlikely and p64 may in fact have only
one or two transmembrane domains.
With the exception of phospholemman (34), which is also a relatively
small protein, no other putative Cl channel has a similar
topology to p64H1. Apart from polypeptide toxins and ion channels
encoded by viruses (35, 36), the smallest proteins currently thought to
contribute to ion channel pores are phospholemman and minK (37, 38).
These have Mr values of ~8,000 and ~14,000,
respectively. The apparent Mr of the muscle plasma membrane protein phospholemman increases markedly (by ~7,000) on phosphorylation by PKC and PKA, whereas the apparent
Mr of p64H1 increases by ~10,000 on
PKC-mediated phosphorylation to ~43,000, even though the consensus
PKC site located between the predicted transmembrane domain and the N
terminus (Fig. 1A) may be nonfunctional. This corresponds to
the Mr of the native rat brain protein (18),
suggesting that p64H1 is phosphorylated in vivo. Western
blotting suggested that in our experiments, the recombinant protein
(Mr ~33 kDa) was not phosphorylated. It may be
significant that both PKC and p64H1 are enriched in hippocampus and
cerebellum. Phospholemman homo-oligomers formed anion channels following bilayer reconstitution (34), and minK mRNA
induced Cl currents and K+ currents in
oocytes via interactions involving the N-terminal and C-terminal
domains of the expressed protein (39). minK has recently been shown to
contribute to the cardiac inward rectifier Iks,
where it associates with the novel K+ channel subunit
KvQT1 (40, 41). Interestingly, PKC enhanced minK-associated
Cl currents and diminished K+ currents in
oocytes by phosphorylating different sites on the protein (35).
Despite the detailed experimental evidence suggesting that p64 is an
ion channel component (15-17), we suggest that it is possible that
p64H1 may act as a channel regulator or activate endogenous brain ER
anion channels. p64H1 may associate with other proteins (18),
consistent with this possibility. The difficulty of assigning specific
roles to novel proteins has been well illustrated by ICln. This widely distributed membrane current
has been associated with the expression of a soluble cytoplasmic
protein, pICln, which appears to couple the activation of
plasma membrane Cl channels and cell swelling in, for
example, Xenopus oocytes (42). Mutagenesis studies strongly
suggested that pICln actually contributes to an ion channel
pore (43), although the precise molecular mechanism by which this
occurs remains to be elucidated. Meanwhile, it has been shown that
expression of either pICln or the unrelated protein ClC-6
can enhance an endogenous Xenopus oocyte current indistinguishable from ICln (44). This suggests
that in reality ICln is an unidentified channel
that can be activated by a variety of different proteins. Many
proteins, including membrane proteins, are known to act as channel
regulators. For example, the integral membrane protein TipE has been
shown to enhance the expression of a Drosophila
Na+ channel (33). It is clear that detailed information
concerning the biophysical and pharmacological properties of identified
intracellular Cl channels would be valuable, but there
are very few single-channel data for ER anion channels including p64
(16). Most recordings are from non-neural tissues (3, 5, 7), and many
of these channels may be protein translocation pores rather than
conventional ion channels. Anion channels reconstituted from rat brain
microsomes (2, 45) and cardiac mitoplast membranes (11) are poorly selective for anions versus cations, like p64H1-related
channels, but they appear to display different conductances and have
different single-channel gating and substate behavior.
In conclusion, we have described p64H1 as the first brain ER anion
channel component to be identified at the molecular level. We have also
demonstrated the existence of a new gene family containing p64, p64H1, and possibly other members (as
suggested by Northern blotting). p64H1 may contribute directly to an
ion channel, as suggested for p64 (16, 17), or its role may be more
indirect. For example, it could belong to a new class of membrane
proteins coupling ion channels, transporters, and membrane receptors in a cascade of interacting proteins (46). The availability of p64H1 cDNA will enable this and other models to be
tested to elucidate the precise role of the protein in neurones and
other cells.
FOOTNOTES
*
This research was supported by the Medical Research Council
and the Wellcome Trust.The costs of publication of this
article were defrayed in part by the
payment of page charges. The article must therefore be hereby marked
"advertisement" in
accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
To whom correspondence should be addressed: Dept. of Biochemistry,
Hugh Robson Bldg., University of Edinburgh, George Square, Edinburgh EH8 9XD, UK. Tel.: 44-131-650-3873; Fax: 44-131-650-3711; E-mail: Richard.Ashley{at}ed.ac.uk.
1
The abbreviations used are: ER, endoplasmic
reticulum; PCR, polymerase chain reaction; RT-PCR, reverse
transcription PCR; SSPE, saline/sodium phosphate/EDTA; PBS,
phosphate-buffered saline; SSC, saline/sodium citrate buffer; UTR,
untranslated region; HEK, human embryonic kidney; TBS, Tris-buffered
saline; PKC, protein kinase C; PKA, protein kinase A;
DiO-C5-(3), 3 ,3 -dipentyloxacarbocyanine iodide; DIDS,
4,4 -diisothiocyanatostilbene-2,2 -disulfonic acid; Tricine,
N-[2-hydroxy-1,1-bis(hydroxymethyl)ethyl]glycine; bp, base
pair(s); kb, kilobase(s); TTBS, Tween 20/Tris-buffered saline.
ACKNOWLEDGEMENTS
We thank David Sheppard for helpful
discussions, Richard Ribchester for help with image capture and
printing, and Ronald McKay for the HT-4 cells.
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Copyright © 1997 by the American Society for Biochemistry and Molecular Biology.
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