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Volume 272, Number 40,
Issue of October 3, 1997
pp. 25135-25142
©1997 by The American Society for Biochemistry and Molecular Biology, Inc.
Zyme, a Novel and Potentially Amyloidogenic Enzyme cDNA
Isolated from Alzheimer's Disease Brain*
(Received for publication, June 16, 1997)
Sheila P.
Little
§,
Eric P.
Dixon
,
Frank
Norris
¶,
William
Buckley
,
Gerald W.
Becker
¶,
Melvin
Johnson
¶,
John R.
Dobbins
¶,
Tamara
Wyrick
,
James R.
Miller
¶,
Warren
MacKellar
,
Deena
Hepburn
**,
Jose
Corvalan
,
Donald
McClure
¶,
Xiaodong
Liu
,
Diane
Stephenson
,
James
Clemens
and
Edward M.
Johnstone
From the Central Nervous System Research,
¶ Technology Core Research, Cancer Research, and
** Endocrine Research, Lilly Research Laboratories, a Division of Eli
Lilly and Company, Indianapolis, Indiana 46285
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS AND DISCUSSION
FOOTNOTES
REFERENCES
ABSTRACT
The deposition of the amyloid peptide in
neuritic plaques and cerebral blood vessels is a hallmark of
Alzheimer's disease (AD) pathology. The major component of the amyloid
deposit is a 4.2-kDa polypeptide termed amyloid -protein of 39-43
residues, which is derived from processing of a larger amyloid
precursor protein (APP). It is hypothesized that a chymotrypsin-like
enzyme is involved in the processing of APP.
We have discovered a new serine protease from the AD brain by
polymerase chain reaction amplification of DNA sequences representing active site homologous regions of chymotrypsin-like enzymes. A cDNA
clone was identified as one out of one million that encodes Zyme, a
serine protease. Messenger RNA encoding Zyme can be detected in some
mammalian species but not in mice, rats, or hamster. Zyme is expressed
predominantly in brain, kidney, and salivary gland. Zyme mRNA
cannot be detected in fetal brain but is seen in adult brain. The Zyme
gene maps to chromosome 19q13.3, a region which shows genetic linkage
with late onset familial Alzheimer's disease.
When Zyme cDNA is co-expressed with the APP cDNA in 293 (human
embryonic kidney) cells, amyloidogenic fragments are detected using
C-terminal antibody to APP. These co-transfected cells release an
abundance of truncated amyloid -protein peptide and shows a
reduction of residues 17-42 of A (P3) peptide. Zyme is
immunolocalized to perivascular cells in monkey cortex and the AD
brain. In addition, Zyme is localized to microglial cells in our AD
brain sample. The amyloidogenic potential and localization in brain may
indicate a role for this protease in amyloid precursor processing and
AD.
INTRODUCTION
The generation of the amyloid peptide is thought to be the
result of processing of the amyloid precursor protein
(APP)1 by one or more
proteases. After the deduced amino acid sequence of APP was revealed, a
number of laboratories initiated studies to purify and characterize the
N-terminal cleaving enzyme of amyloid -protein (A ), termed
-secretase (1). The cleavage of the Met596-Asp597 bond of the full-length APP
generates the N-terminal amino acid of A , which was first shown by
Glenner and Wong (2) to be aspartic acid. -Secretase is yet an
unidentified protease.
Several themes and strategies influenced the direction of investigation
of -secretase. The first strategy was to follow a traditional
biochemical purification. Assays were utilized in which short peptide
substrates were substituted for the large transmembrane precursor
protein (1). Any enzyme capable of making a methionine (M)/aspartic
acid (D) cleavage could be designated a potential -secretase. The
second theme, since the amino acid that surrounded the N terminus of
A was found to be a methionine, was some laboratories have
rationalized that a search for an enzyme with chymotrypsin-like
specificity (a specificity for cleavage of subtrates containing a
neutral hydrophobic residue at the S1 subsite) was necessary
(3-7).
To facilitate the second approach, we have developed a method to
identify chymotrypsin-like enzymes. The amino acid sequences of several
chymotrypsin-like enzymes were compared, and regions of at least four
amino acids of homology were identified. Specifically, the deduced
amino acid sequences of rat and mouse mast cell proteases, human
cathepsin G, granzymes, and chymotrypsin were compared, and consensus
sequences were identified. The motifs TAAHC, DIMLL, and GDSGGPL contain
the active histidine (H), aspartic acid (D), and serine (S), which are
part of the active site/charge-relay system of serine proteases.
Oligonucleotides directed toward these active site regions were used as
primers for the polymerase chain reaction amplication of relevant
cDNAs.
A novel serine protease, given the name Zyme, has been identified using
this technology from Alzheimer's disease brain. The Zyme cDNA
sequence is highly homologous to human trypsinogens I-IV and human
kallikreins (like prostate-specific antigen) and is tissue-specific for
brain, kidney, and salivary gland. Zyme sequence is conserved in many
mammalian species but is not detected in rats, mice, and hamsters. It
is expressed predominantly in normal and AD adult brain and is not
detected in human fetal brain. The Zyme gene maps to chromosome
19q13.3. When Zyme cDNA was co-expressed with the APP 695 cDNA
in 293 cells (human embryonic kidney cells), amyloidogenic fragments
were detected by Western blot analysis using antibody to the C terminus
of APP. The co-transfected cells release an altered pattern of A
products. Zyme can be immunolocalized to perivascular cells in primate
and AD brain tissue. Since perivascular cells are thought to be the
progenitor cells to microglial cells, the potential role for Zyme in AD
pathology may evolve from its activity in activated microglial cells
known to surround neuritic plaques.
EXPERIMENTAL PROCEDURES
Materials
All enzymes, commercially available plasmids, and
cell culture media were purchased from Life Technologies, Inc. unless
otherwise indicated. All radioisotopes were purchased from NEN Life
Science Products. Tricine gels and buffers for SDS-polyacrylamide gel electrophoresis were purchased from ISS Inc. and Novex. Reagents for
the ECL-Western blot analysis were purchased from Amersham Corp.
Reagents for the polymerase chain reaction (PCR) were obtained from
Perkin-Elmer. Human poly(A)+ messenger RNA was purchased
from CLONTECH. Brain tissue (AD and normal) and APP
C-terminal rabbit antisera (BX6) were the kind gifts of Athena
Neurosciences. Brain tissue was obtained from normal adult female
rhesus monkeys.
Methods
Library screening, 32P-labeling,
ligations, restriction digests, the kinase reaction, and all other
molecular biology techniques were performed as described in Sambrook
et al. (8) unless otherwise stated.
Identification of Homologous Regions of Chymotrypsin-like
Proteases
LINEUP and PRETTY algorithms of the Wisconsin Genetic
Computer Group Program Package (9) were used to identify consensus sequences of some chymotrypsin-like enzymes. Human cathepsin G, granzymes, chymotrypsin, and mouse and human mast cell protease amino
acid sequences were aligned, and the following consensus sequences were
revealed: IIGG, PHSRPYMA, CGGFL, TAAHC, DIMLL, TLREV, GDSGGPL, and
VAHGI. Only TAAHC, DIMLL, and GDSCGGPL (active site homologous regions)
were used for PCR primer design.
PCR Identification of Protease cDNA and Cloning
The
sequence of the PCR primers for molecular enzymology experiments were
essentially based on Lathe's rule (10). TAAHC = GTG (A/C)TG ACA
GCT GCC CAC TG, DIMLL (forward) = GAC ATC ATG CTG (A/C)AG CTG and
(reverse) CAG CT(G/T) CAG CAG CAT GAT GTC, and GDSGGPL = CAG GGG
GCC GCC GGA GTC GCC. Additional bases were added to increase the length
of the PCR primer. Total RNA was extracted from human brain superior
frontal gyrus using RNAgent's Total RNA Isolation Kit (Promega), and
complementary DNA was generated using random hexamers essentially as
described by Gerard et al. (11). PCRs were performed at
94 °C for 1 min, at 52-55 °C for 1 min, and at 72 °C for 3 min for 30 cycles using the TAAHC and GDSGGPL primers. PCR products
were analyzed by Southern blot hybridization to an internal probe
(DIMLL primer). PCR products bands that were 450-500 bp and hybridized
to the internal probe were excised, and a second round of PCR
amplification was conducted using the TAAHC probe and the DIMLL
(reverse) probe. PCR products that were 160-180-bp in size were
subcloned into pUC18 and pGEM3Z, transformed into DH5 , and then
sequenced. Clone 56Z contained an open reading frame containing active
site homologous regions consistent with a serine protease and will
hereby be referred to as Zyme. DNA sequence from clone 56Z was used as
template for subsequent hybridization experiments.
Construction of cDNA Library
A cDNA library was
constructed using AD brain mRNA with the Superscript Lambda System
for cDNA Synthesis and Lambda Cloning (Life Technologies, Inc.).
PCR primers representing the unique DNA sequence of clone 56Z (ZYME 3, 5 -AACCGAATCTTCAGGTCTTCCTGGG-3 , and ZYME 4, 5 -ATGGCTGGCGGCATCATAGTCAGGG-3 ) were used to create an
-32P-labeled probe for library screening essentially as
described by Schowalter and Sommer (12). This probe will be
subsequently referred to as Zyme 3-4. Out of 1 × 106
phage plated, one clone of 1451 bp was isolated. DNA sequence was
determined by Lark Sequencing Technologies, Inc.
Cloning of Zyme Genomic Clone and Chromosome Localization
A
human chromosome 19 genomic library was purchased from ATCC (No. 57711)
with the Escherichia coli host strain LE392 (No. 33572). The
Zyme 3-4 radiolabeled probe was generated as described under
"Experimental Procedures." A genomic clone was isolated by
conventional screening of Charon 21A phage libraries (8). DNA from a
positive phage, 66zyme, containing an insert of 4.2 kb was digested
from Charon 21A using HindIII and subsequently subcloned
into pUC-18. The 4.2-kb fragment was then random primed for synthesis
of a probe used for chromosome localization by fluorescence in
situ hybridization (FISH) analysis by BIOS Laboratories (New Haven, CT).
In Vitro Transcription
A Zyme cDNA fragment spanning
nucleotides 169-336 was subcloned into the SmaI site of
pGEM-3Z. The glyceraldehyde-3-phosphate dehydrogenase (GAPDH) template
for in vitro transcription was purchased from Ambion Inc.
For in vitro transcription of suitable antisense cRNA,
pGEM-3Z was linearized with HindIII. Template cDNA was
gel purified after separation on a 1% Tris borate/EDTA-agarose gel
using the Prep-a-gene (Bio-Rad). In vitro transcription was performed according to the manufacturer protocol (Promega) except that
50 µCi of [32P]UTP at 400 Ci/mmol were used in the
absense of cold UTP. Transcription reactions were incubated at 37 °C
for 60 min and then the cDNA template was removed by the addition
of 1 unit of RNase-free DNase. Unincorporated [32P]UTP
was removed by size fractionation over a Sephadex G-50 RNA column, and
the in vitro transcribed probe was quantitated using a
Beckman liquid scintillation counter.
RNase Protection Analysis
RNase protection assays were
performed according to the manufacturer instructions (Ambion Inc.) with
minor modifications. Twenty µg of total RNA were incubated with the
radiolabeled cRNA probes in hybridization buffer (80% deionized
formamide, 100 mM sodium citrate, pH 6.4, 300 mM sodium acetate, pH 6.4, and 1 mM EDTA),
heated for 3 min at 95 °C, and then hybridized overnight at
42 °C. Single-stranded RNA and free probe were digested by adding 5 units/ml RNase A and 200 units/ml RNase T1 for 30 min at 37 °C. The
RNase was inactivated with the addition of 300 µl of
inactivation/precipitation buffer. The samples were precipitated by
incubating at 20 °C for 2 h, followed by centrifugation at 10,000 × g for 15 min at 4 °C. The protected
fragments were resuspended in loading buffer, heated to 95 °C for 3 min, electrophoresed on Tris borate/EDTA-polyacrylamide/urea gels,
dried, and exposed to x-ray films at 80 °C.
Mammalian Expression Vectors and DNA Transfection
The
1.4-kb Zyme cDNA was cloned into the eukaryotic expression vector
pRC/CMV (Invitrogen). The expression vectors containing APP 695 and APP
751 have been previously described (13). Cultured 293 cells (ATCC No.
CRL 1573) were transfected in 6-well dishes using the calcium phosphate
precipitation method of Chen and Okayama (14) in medium containing
Ham's F-12:DMEM (Dulbecco's modified Eagle's medium, Life
Technologies, Inc.), 3:1, with 5% fetal calf serum. After
transfection, medium was changed, and cells were incubated for 72 h at 37 °C in a 5% carbon dioxide, 95% air atmosphere. Cell
pellets and culture media were harvested in Tricine sample buffer in
preparation for Western blot analysis.
Recombinant Zyme Activation, Purification, and Substrate
Specificity
Human 293 cells transfected with a plasmid containing
the 1.4-kb Zyme cDNA were subjected to selection by growth in G418
(400 µg/ml) for 3 weeks, after which time stable transformants were isolated. Clone 5 generated identifiable amounts of Zyme protein in the
culture medium. Zyme has a putative activation peptide, EEQNK,
analogous to the activation peptide of other serine proteases. Auto-activation of the enzyme was accomplished by concentrating the
cell culture supernatants approximately 10-fold and then leaving the
concentrate at 4 °C for approximately 1 week before purification. Purification of Zyme from the concentrated cell culture supernatants was achieved by reversed-phase high pressure liquid chromatography (C-8, Aquapore RP-300, 0.45 × 25 cm, Applied Biosystems) using a
linear gradient of 0.1% trifluoroacetic acid/acetonitrile. Generally, the gradient increased at a rate of 1% acetonitrile/min. Fractions containing Zyme were located by SDS-polyacrylamide gel electrophoresis, collected, lyophilized, and stored at 20 °C (15).
Western Blot Analysis
Western blot analysis was conducted
essentially as described by Johnstone et al. (16). Rabbit
anti-Zyme antibody (No. 274) was prepared by immunization with a
peptide representing residues 72-88 of the deduced amino acid sequence
of Zyme (Research Genetics, Huntsville, AL).
Metabolic Labeling, Immune Precipitation, and Gel
Fluorography
Twenty-four h after transfection, cells were
incubated for 2 h in methionine-free, serum-free DMEM and labeled
overnight with 300 µCi/ml [35S]Met (NEN Life Science
Products) in serum-free DMEM. Cell culture medium was subjected to
immune precipitation with the monoclonal antibody 4G8 (Senetek)
essentially as described by Weidemann et al. (17).
Monoclonal 4G8 is reactive to amino acid residues 17-24 of amyloid
peptide. Immune complexes were boiled in reducing SDS sample buffer,
electrophoresed on a 12.5% Tris-Tricine gel (Daiichi) and subjected to
autofluorography.
Immune Localization of Zyme
Rhesus monkey brain
(n = 3) was perfusion fixed and frozen. Human AD brain
was immersion fixed, cryoprotected, and frozen. Four separate cortical
regions were analyzed using anti-Zyme antibody 274 and an
immunoperoxidate stain (ABC kit). For double immunostaining, sections
of AD cortex were first labeled with Zyme antiserum (1:500) using an
avidin-biotin detection system. Subsequently, sections were incubated
with monoclonal antibody to von Willebrand's factor VIII (1:10;
Boehringer Mannheim) or to HLADR (prediluted; Biogenex Labs, San Ramon,
CA). The monoclonal was visualized using an alkaline phosphatase-fast
red detection system. Sections were mounted in 70% glycerol and
examined using a Nikon Microphot microscope equipped with Nomarsky
optics.
RESULTS AND DISCUSSION
Molecular Enzymology
We have designed PCR primers to the
active site amino acid sequence of those enzymes that are thought to be
chymotrypsin-like and have identified serine proteases. Our primers
reflected codon usage (Lathe's rules (10)) rather than degeneracy. The
first subcloned PCR product was identical in sequence to human tissue plasminogen activator, serine protease (data not shown). The second PCR
product represented the unique Zyme sequence. Only 1 phage in
106 was identified in our human brain cDNA library.
The Zyme transcript consists of 1451 bp, and the open reading frame
encodes a protein of 244 amino acids (Fig.
1A). Residues surrounding the
presumed initiation codon at +1 (CGGCCAUGA) are consistent with the
Kozak consensus sequence (CC(G/A)GCCAUGG) (18, 19). One polyadenylation
site is seen at +1245 bases. The active site homologous sequences are
shown as TAAHC, DIMLL, and GDSGGPL. The chymotrypsin-like
consenses sequences, IIGG and PHSRPYMA, which were not a part of
the active site, were not conserved. Amino acid residue 136 is a
possible site for Asn-linked glycosylation. A hydropathic analysis of
Zyme in Fig. 1B shows an extremely hydrophobic region
representing the first 20 residues, a presumed signal peptide.
Fig. 1.
A, nucleotide sequence and predicted
amino acid sequence from the 1.4-kb cDNA clone encoding Zyme. The
amino acid sequence is shown in a single-letter code. The active sites
that were used for the design of the PCR primers are
underlined. The in-frame stop is indicated with an
asterisk. B, plot of hydrophobicity and
hydrophilicity. Zyme primary sequence was analyzed using the PEPTIDESTRUCTURE program of the University of Wisconsin software package (9).
[View Larger Version of this Image (46K GIF file)]
When the amino acid sequence was analyzed using the alogorithm FASTA,
Xenopus laevis trypsinogen was found to have the highest identity with Zyme (45%). To predict the phylogenetic relatedness of
Zyme with other human serine proteases, enzymes identified by FASTA
were used in the PILEUP program of the Genetic Computer Group Package
software (Fig. 2). The Zyme amino acid
sequence was aligned with a group of proteases that does include
chymotrypsin, human trypsinogens I-IV, the glandular kallikreins 1 and
2, and prostate-specific antigen. Enzymes like cathepsin G and granzyme A showed less similarity to Zyme.
Fig. 2.
Dendrogram of multiple pair wise alignments
of other human serine proteases. The PILEUP alogorithm was used to
generate the plot of Zyme-related enzymes. GenBankTM/EBI
accession numbers are as follows: cathepsin G, P06868; granzyme B,
P08311; complement factor D, P00746; granzyme A, P12544; glandular
kallikrein 2, P20151; prostate specific antigen, P07288; glandular
kallikrein 1, P06870; trypsinogen IV, P35030; trypsinogen III, P15951;
trypsinogen II, P07478; trypsinogen I, P07477; and chymotrypsin,
P40313.
[View Larger Version of this Image (19K GIF file)]
To better characterize the predicted structural motifs of Zyme, enzymes
found to be similar to Zyme were aligned using the ALIGNMENT software
of GeneWorks (IntelliGenetics, Inc.). Fig. 3 shows the output alignment. Zyme
appears to show homology with several regions of the kallikreins as
well as the trypsinogens. In the region shown by a solid
bar, residues VPFDDDK of trypsin IV represents the activation
peptide domain, whereas PLILSR represents the activation peptide of
prostate-specific antigen (20). The Zyme-predicted activation peptide
shows little similarity to either pro-peptide. 10 of the 12 cysteine
residues align well with cysteine residues in the kallikreins and
trypsinogens. Two cysteine residues, as noted with stars,
are not in alignment and may represent other regions of Zyme-specific
interaction. The amino acid sequence surrounding the active site
cysteine suggests that Zyme is more closely related to the kallikreins
than the trypsinogens. The stippled region indicates an 11 amino acid loop characteristic of the kallikreins not noted in the Zyme
primary sequence. The adjacent aspartic acid active site (residues
59-63) shows conservation and similarity to both the kallikreins and
the trypsinogens. The serine active site (residues 195-205) shows
remarkable similarity as well. The above discussion is meant to simply
show predictive properties of Zyme based on homology with other
proteases.
Fig. 3.
Alignment of deduced amino acid sequences of
Zyme-related proteases. Several proteases showing similarity to
Zyme were aligned using the ALIGNMENT program of GeneWorks
(Intelligenetics). Consensus was set to 50% to show conserved regions
(blocks). Gaps ( ) have been introduced to maximize
alignment. Solid dots indicate conserved cysteine residues,
and stars show other cysteine residues. The solid
bar indicates the activation peptide region of the trypsinogens I-IV, the stippled bar shows a loop, and the open
rectangular box represents residues 72-88 to which anti-Zyme
antibody 274 was directed.
[View Larger Version of this Image (75K GIF file)]
Evolution and Tissue Distribution
To determine the
evolutionary relatedness of Zyme DNA sequence, a blot containing
genomic DNA of multiple species was hybridized under stringent
conditions (8) with the Zyme 3-4 probe (Fig. 4). The degree of relatedness is shown by
the presence of comparable hybridization signals. It appears that bands
of human and marmoset DNA gave signals of similar intensity, whereas
the bands of cat and dog DNA share weak homology and gave less intense
signals. Hybridization with cat and dog may indicate the presence of
other related sequences. Note that some species showed no homology with Zyme. The fact that the human probe did not hybridize with several mammalian genomic DNAs may show that Zyme shows species specificity. When the complete Zyme cDNA is used as a probe, some bands are visible in all species under reduced stringency (data not shown).
Fig. 4.
Southern blot analysis of genomic DNA of
multiple species. A genomic blot of EcoRI-digested
human, marmoset, pig, hamster, rat, mouse, sheep, cow, rabbit, cat, and
dog DNA (BIOS Laboratories) was hybridized with the Zyme 3-4 (as
described under "Experimental Procedures"). The blot was washed
under conditions of high stringency (8).
[View Larger Version of this Image (52K GIF file)]
RNase protection analysis, using a probe consisting of nucleotides
169-336, was conducted to determine the tissue distribution of Zyme
transcripts. A survey of several tissues (liver, kidney, pancreas,
salivary gland, spleen, and testes) shows that more Zyme transcript is
present in brain than other organs (Fig.
5). It is interesting to note that Zyme
RNA is not detectable in human fetal brain but is present in the adult
brain tissue.
Fig. 5.
RNase protection analysis from human
tissue. Designated lanes represent protected fragments obtained
from 20 µg total RNA. RNA was purchased from
CLONTECH for adult brain, fetal brain, liver,
kidney, pancreas, salivary gland, spleen, and testes. Antisense cRNA
probe was generated from pGEM3Z-Zyme cDNA linearized wth HindIII.
[View Larger Version of this Image (72K GIF file)]
Transcripts from AD and normal brain were compared by RNase protection
analysis to a "housekeeping gene," GAPDH (Fig.
6). The overall ratio of Zyme transcript
to GAPDH transcript is higher in AD than in normal cortex. This
suggests that Zyme transcripts may be elevated in AD over the level of
a major glycolytic enzyme, GAPDH. Later in our discussion of Zyme
immunolocalization, we will show that Zyme is present in perivascular
and microglia; therefore, perhaps the elevation of Zyme transcription
may reflect the changes toward the active state of microglia known to
exist in AD pathology (1).
Fig. 6.
Comparison of Alzheimer's disease and normal
aged brain RNA in RNase protection assays. GAPDH antisense cRNA
and Zyme antisense cRNA were co-hybridized with total RNA (20 µg)
from human brain tissue and analyzed as described under "Experimental Procedures."
[View Larger Version of this Image (60K GIF file)]
Chromosomal Localization and FISH-The chromosomal localization of Zyme
was determined by Southern analysis of DNA from a somatic hamster/mouse
cell hybrid panel (BIOS Laboratories). The Zyme 3-4 probe, described
under "Experimental Procedures," hybridized only to human specific
bands. Discordance analysis (Table I) allows localization of Zyme to chromosome 19 (the lowest percent discordance is 0.4). FISH further confirmed localization to chromosome 19q13.3 (BIOS Laboratories) (Fig. 7). A
total of 85 metaphase cells were analyzed using the 4.2-kb Zyme genomic
clone 66zyme as probe. Another marker, E2A (21), was used to
co-localize the Zyme gene to the long arm of chromosome 19. The region
19q13.1-19q13.3 is thought to be a locus for familial Alzheimer's
disease (22). The apolipoprotein E gene map location is 19q13.2.
Although the apoE 4 is strongly associated with AD in late onset
familial AD families, Yu et al. (23) have used linkage
analysis to demonstrate that the apoE region did not cosegregate with
AD in a collection of late onset AD cases, suggesting that apoE is not
the major locus. It is likely that Zyme is part of the locus of
tissue-specific kallikreins (19q13.3), such as prostate-specific
antigen (24), and yet its role in familial AD cannot be ruled out until
tested.
Table I.
Discordance
Percent discordance is determined by dividing the sum of the
corresponding positive and false positive events by 20 (the number of
cell lines analyzed) and then multiplying the resulting fraction by
100.
|
| Chromosome |
Percent
discordance |
|
| 1 |
28 |
| 2 |
36 |
| 3 |
36 |
| 4 |
32
|
| 5 |
56 |
| 6 |
28 |
| 7 |
24 |
| 8 |
44 |
| 9 |
44
|
| 10 |
32 |
| 11 |
24 |
| 12 |
32 |
| 13 |
16 |
| 14 |
28
|
| 15 |
40 |
| 16 |
40 |
| 17 |
40 |
| 18 |
40 |
| 19 |
04
|
| 20 |
32 |
| 21 |
20 |
| 22 |
28 |
| X |
44
|
| Y |
40 |
|
Fig. 7.
Chromosomal localization of Zyme. DNA
from phage clone 66zyme containing the 4.2-kb Zyme genomic sequence was
used to localize Zyme by FISH by BIOS Laboratories. A total of 85 metaphase cells were analyzed with 66zyme to demonstrate a specific
signal for Zyme.
[View Larger Version of this Image (125K GIF file)]
Is Zyme Activity Amyloidogenic?
C-terminal APP fragments were
examined as potential amyloidogenic fragments during Zyme
co-transfection experiments. For clarity of discussion of our results,
we have operationally defined the amyloidogenic fragments by size,
encompassing a region large enough to contain A or portions of A
and the contiguous C terminus of APP. The resolution of C-terminal
fragments using 12.5% Tricine-polyacrylamide gels presents the
-secretase fragment (25) as 10 kDa. A fragment representing the
Cys100 residues has an apparent molecular mass of 14 kDa.
APP C-terminal fragments greater than 14 kDa are thought to contain
additional N-terminal residues as well. Western blot analysis was
conducted using a well characterized C-terminal antibody, BX6 (13).
Co-transfection experiments were performed using APP 695 and APP 751 cDNA and Zyme cDNA in 293 cells. The duration of the transient
assay was 48 h, at which time cells and culture media were
harvested and analyzed by Western blots using antibody to the C
terminus of APP (BX6) or to the Zyme primary sequence (No. 274). The
Western blot in Fig. 8 shows that the
-secretase fragment is detected in cells transfected with either APP
695 or APP 751 cDNA (lanes c and e). When
cells are co-transfected with Zyme cDNA and APP 695 cDNA
(lane d), a plethora of APP C-terminal fragments are
detected at 22, 16, and 12 kDa. A less intense band is seen at 45 kDa.
One of the fragments appears to migrate slightly faster than a
Cys100 fragment in apparent molecular mass. In cells
transfected with Zyme cDNA and APP 751 cDNA, there are less
apparent changes in the C-terminal amyloidogenic fragments (lane
f). The APP 751 form of APP contains the KUNITZ protease inhibitor
domain, and we think that it has either inhibited Zyme activity or
interfered in steps leading to the activation of Zyme (processing from
zymogen to mature enzyme). The 10-kDa non-amyloidogenic fragment
increases in both the APP 695 and APP 751 co-transfected cells. This
observation suggests that the -secretase cleavage has been enhanced
as well in these transfected cells. Similar sized C-terminal fragments (22, 16, and 12 kDa) have been isolated from AD and normal cortical microvessels (26). Fetal microvessels contained little or no 22-kDa
amyloidogenic fragment (26). Also, it is important to note that Zyme is
not detectable in fetal brain (Fig. 5).
Fig. 8.
Detection of amyloidogenic fragments in
co-transfected 293 cells. 293 cells were co-transfected for
72 h with APP and Zyme cDNAs. C-terminal APP fragments were
detected using BX6 antibody in this Western blot. Lane a,
mock; lane b, Zyme; lane c, APP 695; lane
d, APP 695 and Zyme, lane e, APP 751, and lane
f, APP 751 and Zyme.
[View Larger Version of this Image (67K GIF file)]
The culture media of co-transfected cells was analyzed by immune
precipitation of [35S]methionine-labeled cells using
A -specific antibody, 4G8 (directed to residues 17-24 of A ) (17)
(Fig. 9). Cells transfected with Zyme and
APP 695 cDNAs accumulated amyloidogenic fragments in the culture
media representing A (4 kDa), a faster migrating A
(arrow), and P3 (27, 28). P3 is the result of an (internal cleavage) and (C-terminal cleavage) secretase cleavage of
A or APP. The faster migrating A shows that one of the A
products resulting from Zyme co-transfection is truncated, and it is
likely that the cleavage site is not the Met-Asp site seen with
-secretase. Zyme/APP 695 cDNA co-transfected cells showed two
remarkable phenomena. 1) These cells generated a preponderance of a
truncated A (Fig. 9, arrow), and 2) the total amount of
P3 was drastically reduced. This truncated A may be a precursor to
the N-terminal ragged A fragments described by others (29, 30). It
is apparent that the truncated A peptide is capable of being
released from the 293 cell and can be used as a substrate for (A
C-terminal cleavage) secretase. The significance of the drop of P3 is
that during normal processing of APP, a certain proportion of A is subjected to an -secretase-like cleavage (28), yielding a fragment containing residues 17-42 of A which can be isolated from the AD
brain. If the A peptide undergoes -secretase cleavage, it will
prevent the generation of neurotoxic A filaments. Clearly the
presence of Zyme alters the processing of A peptide so that the P3
species is reduced and more, A , albeit truncated, material is
produced. Higgins et al. (31) have demonstrated that P3
deposition is correlated with AD and is noticeably absent in vascular
amyloid deposits. Later in this report we show that Zyme is localized to microvessels, and its activity to reduce P3 is consistent with the
observations of Higgins et al. (31)
Fig. 9.
Immunoprecipitation of A products.
4G8 was used to immunoprecipitate A products from 293 cells
co-transfected with APP 695 and Zyme cDNA. Coomassie Blue-stained
unlabeled A peptide 1-40 (Bachem, CA) co-migrated with the
[35S]methionine-labeled band representing A (data not
shown).
[View Larger Version of this Image (40K GIF file)]
A Characterization of Zyme
Aliquots of co-transfected cells
and culture media shown in Fig. 10 were
also analyzed by Western blot using antibody to Zyme. Fig. 10,
lanes b, d, and f, shows the presence of a new
30- and 28-kDa protein and a smaller fragment at 6.5 kDa not seen in
mock-transfected cells. The 6.5-kDa fragment appears to be present in
transfections where APP C-terminal amyloidogenic fragments are
generated. Conversely, APP 751/Zyme cDNA co-transfected cells show
a build-up of a higher molecular mass Zyme and an absence of the
6.5-kDa fragment. The 6.5-kDa fragment cannot be detected using
pre-absorbed anti-274 antibody (data not shown) and appears to be
Zyme-specific. The anti-274 antibody was prepared against residues
72-88 of mature Zyme primary sequence. The detection of this smaller
Zyme fragment suggests that during Zyme activation yielding APP
amyloidogenic fragments, Zyme is processed to generate a second chain
containing residues 77-84. The only form of Zyme detected in the
culture media is the higher molecular mass form (Fig. 10, lanes
g, i, and k). More Zyme is detected in cells
co-transfected with APP 751 and Zyme cDNA.
Fig. 10.
Detection of Zyme in co-transfected
cells. Aliquots of cell lysates and culture media as shown in Fig.
8 were analyzed on a Western blot using anti-Zyme antibody 274. Shown
are cell lysates (lanes a-f) and media (lanes
g-k). Lane a, mock; lane b and g,
Zyme; lane c and h, APP 695; lanes d
and i, Zyme and APP 695; lanes e and
j) APP 751; and lanes f and k, Zyme
and APP 751.
[View Larger Version of this Image (65K GIF file)]
Can We Demonstrate Actual Activity for the Protein Coded for by the
Zyme cDNA?
A stably transformed 293 cell line (No. 5) was
prepared after selection of transfected (pRC-Zyme) cells in G418 (400 µg/ml). After autoactivation and purification of Zyme from the cuture media of the clone No. 5 cell line, two different commercially available p-nitroanalide substrates with trypsin
specificities were used to demonstrate activity, S2288
(H-D-Ile-Pro-Arg-pNA) and S2266 (H-D-Val-Leu-Arg-pNA) (15). Zyme can
cleave after arginine residues.
Immune Localization of Zyme in Monkey and the AD Brain
Rhesus
monkey cortex was stained with anti-Zyme antibody and an
immunoperoxidase stain. Fig. 11,
b and c, shows positive immunostaining of monkey
cortex of cells lining the perimeter of cortical microvessels. Fig. 11,
d and e, represents staining of human AD brain
representing four separate cortical regions of one brain. In human AD
brain, Zyme-positive material could also be seen in the microvessel and microglial cells. The microglial cells could be counter-stained with
HLADR and a microvascular stain, von Willebrand's factor VIII (Fig.
12). The Zyme-positive material appears
to be in granules in the microvessels, but a more diffuse stain appears
within the microglial cells of the cortex. It is likely that Zyme is
localized in perivascular cells because of their anatomical location.
Perivascular cells proceed along a lineage to microglial cells, which
are activated in AD. Wisniewski and Wegiel (32) have proposed that the
amyloid core is made by a contiguous sphere of microglial cells.
Fig. 11.
Rhesus monkey frontal cortex
(a-c) and AD parietal cortex (d and
e) immunostained with anti-Zyme antibody 274. a,
anti-Zyme antibody 274 was pre-absorbed with purified Zyme protein
(15). b, shown is adjacent section stained with non-adsorbed
antiserum. c, specific staining is observed in cells lining
the perimeter of cortical microvessels (arrows).
d, shown is anti-Zyme staining in AD cortex also found
associated with perivascular cells. e, immunostaining of AD
cortex reveals staining of isolated non-neuronal cells, presumptive
microglial. Scale bar, 60 µm (a, b),
30 µm (c), and 10 µm (d, e).
[View Larger Version of this Image (115K GIF file)]
Fig. 12.
Co-localization of Zyme immunoreactivity
with von Willebrand's factor VIII (A) and with HLADR
(B). In both photomicrographs, Zyme is immunolabeled
with a brown reaction product (arrows) while the
second label uses a red chromagen (curved
arrows). A, von Willebrand's factor VIII is present in
microvascular endothelial cells while Zyme immunoreactivity is present
in the perivascular region. B, Zyme and HLADR are
co-localized within the same cell. Scale bar, 20 µm.
[View Larger Version of this Image (146K GIF file)]
The method for identification of proteases using active site homologous
regions as probes has been performed by other laboratories (33, 34) to
hunt for serine and cysteine proteases. Our study identifies a serine
protease that either directly generates amyloidogenic fragments or is a
member of a cascade of other potentially amyloidogenic activities. The
higher ratio of Zyme transcript to GAPDH RNA in the AD brain and its
general relocalization to microglial cells in the AD brain suggest that
this enzyme has a different display in a brain disease state. A
homologous tissue-specific serine protease, prostate-specific antigen,
is highly correlated with disease of the prostate (35, 36), and perhaps
Zyme will be found to have a relationship with diseases of the brain.
Elucidation of the role of Zyme in the brain awaits further study.
FOOTNOTES
*
The costs of publication of this
article were defrayed in part by the
payment of page charges. The article
must therefore be hereby marked
"advertisement" in
accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
§
To whom correspondence should be addressed: Tel.: 317-276-3506;
Fax: 317-276-1414; E-mail: Little_Sheila_P{at}Lilly.com.
1
The abbreviations used are: APP, amyloid
precursor protein; AD, Alzheimer's disease; A , amyloid -protein;
PCR, polymerase chain reaction; bp, base pair(s); kb, kilobase(s);
GAPDH, glyceraldehyde-3-phosphate dehydrogenase; DMEM, Dulbecco's
minimal essential medium; Tricine, N-[2-hydroxy-1,1-bis(hydroxymethyl)ethyl]glycine; FISH,
fluorescence in situ hybridization; apoE,
apolipoprotein E; P3, residues 17-42 of A .
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Copyright © 1997 by the American Society for Biochemistry and Molecular Biology.
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