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(Received for publication, April 17, 1997, and in revised form, June 24, 1997)
From the The synthesis and secretion of factor H, a
regulatory protein of the complement system, were studied in skin
fibroblasts from an H-deficient child who has chronic
hypocomplementemic renal disease. In normal fibroblasts, factor H
transcripts of 4.3 and 1.8 kilobase pairs (kb) encode a 155-kDa protein
containing short consensus repeat (SCR) domains 1-20 and a 45-kDa
protein which contains SCRs 1-7, respectively. The patient's
fibroblasts expressed normal amounts of the 4.3- and 1.8-kb messages
constitutively and after tumor necrosis factor- Proteins of the complement system are powerful effectors of innate
host defense against infection and of immunopathological responses
(reviewed in Colten and Gitlin (1)). The biological effects of the
complement cascade are under the control of membrane-bound and fluid
phase proteins (e.g. complement receptor 1, decay
accelerating factor, C4 binding protein, and factor H) that limit
complement activation and/or activities.
Complement protein factor H (2, 3) inhibits the formation and
accelerates the decay of the alternative pathway enzyme of complement
activation (C3bBb), an enzyme that cleaves the third component of
complement, C3. Factor H also serves as a cofactor for the factor
I-mediated cleavage of one of the biologically active forms of C3, C3b.
These activities depend on interaction with the C3b molecule via at
least one of three binding sites in the factor H protein (4). Other
less well defined functions of factor H have been suggested by the
presence in factor H protein of at least two heparin binding sites (4,
5) that could facilitate interaction with extracellular matrix, and by
the interaction of factor H with lymphocytes and other leukocytes.
Primary sequence analysis of factor H revealed a tandem array of 20 homologous units, called short consensus repeats
(SCRs)1 each about 60-amino
acid residues long (6). These structures have been recognized in 12 complement proteins and a growing number of non-complement proteins
including blood clotting factor XIIIb, the The approximately 100-kb factor H gene is located in the RCA gene
cluster relatively near (~7 megabases) genes coding for other
regulators of complement activation (membrane cofactor protein, complement receptor 1 and 2, decay accelerating factor, and C4 binding
protein) on chromosome 1q (11) and is most closely linked to factor
XIIIb of the coagulation cascade (12) and the factor H-related gene 2 (13). Two mRNAs are generated from the factor H gene, a 4.3-kb
species that includes all 20 SCRs from which the 155-kDa protein H is
derived and a 1.8-kb mRNA species that includes the first 7 SCRs
plus an alternate 3 Genetic deficiencies of the approximately 30 proteins that constitute
the effector and control proteins of the complement system have been
described in humans and other species. Some, such as C9 deficiency,
have no significant clinical consequences, whereas most of the others
either have profound effects on susceptibility to infection or are
associated with manifestations of "autoimmune" disorders including
systemic lupus erythematosis and chronic glomerulonephritis (19).
Genetic deficiency of factor H has been described in domesticated animals (20) and in a relatively small number of human kindred (21-28). In general, patients with homozygous factor H deficiency suffer recurrent bacterial infections (including Neisseria
sp.), vasculitis, and/or glomerulonephritis (29). In none of these cases has the molecular basis for factor H deficiency been
determined.
The availability of skin fibroblasts from a patient with factor H
deficiency and hypocomplementemic glomerulonephritis (28) made it
possible to investigate the molecular and cellular biology of H
deficiency in this kindred. In studies of this patient we demonstrated
a compound heterozygous deficiency with mutations of conserved cysteine
residues in SCR 9 and 16. These mutations disrupt intrachain disulfide
bridges, thereby perturbing the higher order structure of factor H. This leads in turn to a profound selective block in secretion of the
155-kDa factor H protein. Because both mutations are downstream of the
codons for the short form of factor H, the 45-kDa form is secreted with
normal kinetics.
1-µl plasma samples and 1 µg of
recombinant human factor H (Sigma) were run on 8.5% SDS-PAGE under
nonreducing conditions, then transferred to a nitrocellulose membrane
(Hybond C Extra, Amersham Corp.). The membrane was blocked and
developed with goat anti-human factor H IgG (Incstar, Stillwater, MN)
and rabbit anti-goat IgG-peroxidase (Rockland, Gilbertsville, PA) using
3,3 A punch skin biopsy was obtained under
local anesthesia after obtaining informed consent according to the
institutional review board guidelines at the University of Minnesota.
Primary cultures of skin fibroblasts were established from either
collagenase dispersed cells or from an explant. Normal primary adult
human fibroblasts (GM8399) were obtained from the human genetic
repository (National Institute of General Medical Science, Camden, NJ).
All cell cultures were maintained in growth medium (Dulbecco's
modified Eagle's medium with HEPES, L-glutamine, and 10%
heat-inactivated fetal bovine serum (Life Technologies, Inc.)) at
37 °C in humidified air with 5% CO2. Fibroblasts at
passage 10 or lower were used for all experiments.
Cells were grown to
confluence, washed twice with Hanks' balanced salt solution (HBSS,
Life Technologies, Inc.), and incubated overnight in medium containing
HEPES, L-glutamine, penicillin, streptomycin, and 0.1%
bovine serum albumin (cell culture tested, Sigma) alone or with 20 ng/ml TNF- Total RNA was prepared from the
patient's fibroblasts by cesium chloride centrifugation of guanidium
thiocyanate (Fluka Chemical Corporation, Ronkonkoma, NY) lysates (30).
Ten micrograms of total RNA samples were subjected to electrophoresis
in a formaldehyde-containing 1% agarose gel with modifications as
described by Garnier et al. (31). Following transfer to a
nitrocellulose sheet (Bio-Rad), hybridization was performed using a
1.4-kb cDNA probe (H-19, gift from Dr. Dennis Hourcade, Washington
University, St. Louis, MO), which spans the nucleotide sequence from
the first half of SCR 1 to the end of SCR 7 (33). The probe was
radiolabeled with [ Fibroblasts were grown to near confluence in 24-well
tissue culture plates (Corning, Corning, NY), then washed twice with warm HBSS and incubated for 1 h in Dulbecco's modified Eagle's medium without methionine (Life Technologies, Inc.) containing L-glutamine, HEPES, penicillin-streptomycin, and 10%
dialyzed fetal bovine serum (Life Technologies, Inc.), supplemented
with 250 µCi/ml [35S]methionine (specific activity,
1199 Ci/mmol, ICN Radiochemical, Irvine, CA). At the end of the pulse
period, the labeling medium was removed, and cells were washed once
with warm HBSS and incubated for 0-12 h in growth medium. At timed
intervals the medium was removed and the cell monolayer washed once
with phosphate-buffered saline (PBS) and lysed by one freeze-thaw cycle
in PBS containing 0.5% sodium deoxycholate (Fisher), 1% w/v Triton
X-100 (Sigma), 10 mM EDTA (Sigma), 2 mM
phenylmethylsulfonyl fluoride (Sigma), and 100 µg/ml leupeptin
(Boehringer Mannheim). Cell lysates and media were clarified by
centrifugation (13,000 × g for 10 min). Total protein
synthesis was measured by trichloroacetic acid (Sigma) precipitation.
SDS (Bio-Rad) was added to each sample to a final concentration of
1%.
Immunoprecipitation and
SDS-PAGE were performed as described previously (34). Briefly, samples
were precleared with heat-killed protein A-containing
Staphylococcus aureus (Immunoprecipitin, Life Technologies,
Inc.) and incubated overnight with excess goat antibody to human factor
H (Quidel Corporation, San Diego, CA) at 4 °C. Immunocomplexes were
collected with an excess of protein A, washed as described in Kulics
et al. (34) and subjected to SDS-PAGE analysis in a 7.5%
acrylamide (Bio-Rad) gel under reducing conditions according to the
method of Laemmli (35). Gels were fixed, stained and destained,
equilibrated with water, and treated with Fluoro-Hance (RPI, Mount
Prospect, IL), then dried. Following autoradiography on Kodak XAR-3
film (Kodak), gel slices corresponding to the radiolabeled bands were
cut out, digested in 15% hydrogen peroxide, and measured by liquid
scintillation spectrometry.
Cells were plated on coverslips in 100-mm
culture dishes in growth medium, incubated overnight, then rinsed with
PBS and fixed in 4% paraformaldehyde in PBS for 1 h at 4 °C.
Cells were permeabilized with 0.1% Triton X-100 (Sigma) in PBS and
100% methanol, blocked with 10 mM glycine in PBS, and then
washed with antibody diluting solution (PBS with 3% FBS (Life
Technologies, Inc.), 3% bovine serum albumin (ICN, Irvine, CA), and
3% skim milk powder). The monolayers were incubated overnight with
rabbit anti-calnexin (DP-23, IgG fraction, kind gift of Dr. David
Perlmutter) and/or goat anti-human factor H (Incstar, Stillwater, MN)
conjugated with fluorescein isothiocyanate, then washed three times
with 1% Triton X-100 in PBS and incubated with goat anti-rabbit IgG Texas Red conjugate for 2 h. Following four washes, cells were fixed with 4% paraformaldehyde in PBS for 20 min, incubated with 10 mM glycine, washed with PBS, and mounted with 100 mM propyl gallate in 90% glycerol. Slides were examined in
a Zeiss epifluorescence microscope (Carl Zeiss, Inc., Thornwood, NY)
equipped with a Bio-Rad MRC laser confocal microscope adaptor using a
63× immersion oil objective. The collected confocal images were
processed using Adobe Photoshop software (version 4.0, Adobe, San Jose,
CA). IgG controls (primary and secondary antibody) were also run and
were found to be not significantly different from the unstained
background. The fluorochromes (fluorescein isothiocyanate and Texas
Red) were also negative for emittance at the filter setting used for
the other. The factor H staining could be completely blocked by
recombinant factor H (Sigma).
RNA isolated from the patient's fibroblasts served as
template for synthesizing the RT-PCR fragments shown in Fig.
1. The Invitrogen cDNA cycle kit
(Invitrogen Corporation, San Diego, CA) was used for generating the
RT-PCR fragments 1-6 (Fig. 1) using the following oligonucleotides as
primers for the reverse transcription at 68 °C annealing
temperature: 5
Table I.
The oligonucleotides listed were used to generate the PCR fragments
shown in Fig. 1
Segment 1-3 and 6-7 were gel-purified either by trough elution or by electrophoresis onto DEAE paper (Whatman), then ligated into Bluescript SK (Stratagene Cloning Systems, La Jolla, CA) using XbaI and XhoI restriction sites and transformed into SURE cells (Stratagene, La Jolla, CA). Plasmid preparations were made either using the Qiagen plasmid preparation kit (QIAGEN Inc., Chatsworth, CA) or modified alkaline lysis (36) or by CsCl centrifugation. Segment 4 and 5 were sequenced directly. Sequence AnalysisDNA sequencing was performed using a model 373A automated DNA sequencer (Applied Biosystems, Foster City, CA) using the standard protocol for the TaqDyeDeoxy Terminator cycle sequencing kit from Applied Biosystems. For PCR fragments cloned into Bluescript, M13 and M13 reverse primers were used, in addition to paired internal 20-mer oligonucleotides designed on the basis of the published factor H sequence (6). All oligonucleotides were synthesized on a model 391 PCR-MATE EP DNA synthesizer (Applied Biosystems) using Cruachem (Glasgow, Scotland) reagents. Purified PCR fragments for direct sequencing were primed with internal paired oligonucleotides. Sequencing was performed on both strands. Direct Sequencing of Genomic DNATo confirm the mutations found in the cDNA clones, high molecular weight DNA was isolated (37) from the peripheral blood leukocytes of the patient and his parents. 800 ng of genomic DNA were amplified by oligonucleotides within SCR 9 (Table I) to confirm the mutation found at position 1679. The resulting
PCR product was gel-purified by elution onto DEAE paper and directly
sequenced using internal sequencing oligonucleotides (5 100-microliter PCR reactions were performed using 100 ng of genomic DNA as template with the oligonucleotides as shown in Table I for confirming the mutation at 2949 in SCR 16. The resulting PCR products were purified by trough elution on agarose gels and subjected to DNA sequencing in the manner described above, utilizing the oligonucleotides used for the PCR as primers. Both strands were sequenced. Case Report A detailed report of the presentation, clinical
course, and renal pathology in the patient with factor H deficiency has
previously been published (28). Briefly, a 13-month-old Native American (Sioux) boy presented with hypocomplementemic hypertensive renal disease. Renal biopsy showed changes consistent with
membranoproliferative glomerulonephritis, deposition of type III
collagen, and segmental complement C3 deposition in capillary loops. A
serum complement profile revealed decreased levels of C3 and factor B
but normal levels of C4 and factor I; factor H was undetectable by
radial immunodiffusion analysis. Slightly depressed levels of factor H
were present in both parents. The child underwent renal transplantation in February 1996. Serum C3 concentrations have remained low, as have
factor H levels. Western blot analysis of the patient's plasma before
and after renal transplantation (Fig. 2)
revealed slightly increased concentration of the 45-kDa factor H and no
detectable 150-kDa factor H when compared with seven normal plasma
samples. There was no significant difference between the pre- and
post-transplantation samples.
Fig. 2. Protein blot analysis. Plasma samples of the H-deficient patient (lane 1, prior to renal transplantation; lane 2, post renal transplantation), normal controls (lanes 4-10), and recombinant factor H (lane 3) were analyzed. A blot was developed using a goat anti-human factor H IgG fraction. Note that in patient's plasma the large H protein is undetectable, and slightly elevated levels of the small form are present in the patient's plasma. The lower panel shows the gel segment with low molecular mass H bands at increased gain. Quantitation of the low molecular mass H band in the digitized image (of another blot) revealed that patient's plasma had 2.5 times the average amount in six normal control samples (range 55-157% of average value). [View Larger Version of this Image (101K GIF file)] Northern Analysis RNA blot analysis of skin fibroblasts from
the factor H-deficient patient revealed 4.4- and 1.8-kb factor H
transcripts in cells incubated in medium alone. As in normal cells
(17), both transcripts were up-regulated by TNF- Fig. 3. RNA blot analysis of normal control and factor H-deficient fibroblasts: unstimulated (lanes 1 and 5), stimulated with 20 µg/ml TNF- (lanes 2 and 6), 1000 units/ml IFN- (lane 3), and the
combination of both (lanes 4 and 7). 10 µg of RNA/lane.
[View Larger Version of this Image (83K GIF file)] Biosynthetic Analysis A preliminary experiment showed that
the 155-kDa factor H was synthesized but not secreted in fibroblasts
from the homozygous H-deficient patient. During a prolonged pulse, a
small quantity of 155-kDa factor H (apparent size of the intracellular
polypeptide) was detected in medium from the patient's cells.
Accordingly, a pulse-chase experiment was performed. The patient's
fibroblasts synthesized 155- and 45-kDa forms of factor H in quantities
and sizes similar to normal fibroblasts (Fig.
4). The 45-kDa protein was secreted with
similar kinetics in the patient's and in normal fibroblasts
(t1/2 ~ 45 min). Factor H (molecular mass, 155 kDa) disappeared from the intracellular compartment accompanied by the
appearance of the 160-kDa H protein in the extracellular medium from
normal fibroblast cultures with a half-time of 40-60 min. In contrast,
for H-deficient cells the 155-kDa factor H protein was retained within
cell lysates. Although a small quantity of the 155-kDa H protein was
detected in the medium at the 12-h chase time point, little or no
secreted 160-kDa protein was detected. Moreover, as estimated from
direct scintillation spectrometry of the radiolabeled bands, less than
10% of cell-associated 155-kDa factor H was lost at 12-h chase;
i.e. little or no degradation of retained factor H was
apparent in the deficient cells.
Fig. 4. Immunoprecipitation of factor H from a pulse-chase experiment in normal (upper panel) and factor H-deficient (lower panel) fibroblasts stimulated with TNF- and IFN- (1-h pulse) (24-h exposure, inset of
upper panel, 25 days of exposure).
[View Larger Version of this Image (30K GIF file)] Visualization of Factor H in Fibroblasts by Immunofluorescence When investigated with a standard
epifluorescent microscope, factor H showed perinuclear staining similar
to staining obtained with antibody to calnexin. Therefore confocal
images were taken of fibroblasts stained for both factor H and calnexin
in several focal planes. Perinuclear distribution of H staining (green
fluorescence, Fig. 5A) also
showed a similar pattern using antibody to calnexin (red fluorescence,
Fig. 5B), a marker for the endoplasmic reticulum compartment
(32). Overlaying the two patterns revealed colocalization of the
signals (Fig. 5C).
Fig. 5. Confocal images of the patient's fibroblasts stained for factor H and calnexin. The two images were taken in the same focal plane using filters for the green fluorescence corresponding to factor H (panel A) and the red fluorescence corresponding to calnexin (panel B).The obtained gray scale images were colorized and overlaid to produce panel C, which shows the colocalization of the two signals (producing orange). Colocalization was established in all focal planes in many fields in several experiments. The cell in the lower right portion of the field shows only very faint H staining, but it is colocalized with the much stronger signal for calnexin. [View Larger Version of this Image (151K GIF file)] Sequence Analysis of Factor H cDNA Clones Nucleotide sequencing of the factor H-deficient patient's entire cDNA revealed 6 base substitutions which deviated from the published normal H sequence (6,GenBankTM HSH.GB_PR, accession no. Y00716). Only changes found on both strands in two or more clones are reported to exclude RT-PCR artifacts. Two mutations affecting the codons for conserved cysteine residues, one
in SCR 9 and the other in SCR 16 were noted, one on each allele (Fig.
6). That is, in the patient's cDNA a
T to C mutation at position 1679 changes cysteine 2 in SCR 9 to
arginine (Cys518 Fig. 6. Schematic representation of the large and the small forms of factor H protein. The T C mutation in SCR 9 causes a Cys Arg change, the G A mutation in SCR 16 causes a
Cys Tyr change, both mutations affecting residues conserved in SCR modules. Only the framework cysteines of the short consensus repeat are
shown. Other conserved residues of the SCR are omitted for simplicity,
but can be found in Barlow et al. (8) and Janatova et
al. (9).
[View Larger Version of this Image (17K GIF file)]
In addition four other substitutions were detected: (a) G to
A change at nucleotide 257 causes a valine to isoleucine change in SCR
1 (Val44 Sequencing of genomic DNA derived from the patient showed
T and C peaks of equal heights at position 1679 (SCR 9), indicating that the T Fig. 7. Sequencing of PCR products generated from genomic DNA of the patient and his parents. The arrows indicate position 1679 and 2949 in SCR 9 and 16, respectively. The patient carries the T1679C mutation that he inherited from his father (the father is heterozygous for this mutation, indicated by a double peak) and the G2949A mutation inherited from his mother (who is heterozygous at this position, indicated by the double peak. The sequence reads from right to left. [View Larger Version of this Image (50K GIF file)]
Direct sequencing of PCR products derived from patient genomic DNA
confirmed all of the other mutations found in the cDNA generated by
RT-PCR. One of these, the T to C change at nucleotide 1277 (Tyr384 The investigation of the cellular and molecular basis of factor H deficiency in a patient with chronic kidney disease revealed a striking block in secretion of the large (155 kDa) isoform of factor H and a defect in degradation of the retained protein in primary cultures of the patient's fibroblasts. Colocalization of the retained factor H with calnexin indicated that the block in secretion prevents egress from the endoplasmic reticulum. Staining for factor H was relatively weak compared with staining for calnexin, possibly due to complexing of factor H with endoplasmic reticulum proteins. This block in secretion of the 155-kDa factor H was selective inasmuch as synthesis and secretion of the small (45 kDa) factor H isoform was normal. The selective block in secretion of the 155-kDa H protein was also reflected in the absence of the corresponding high molecular mass factor H in the patient's plasma and the presence of the low molecular mass H protein. Even though the low molecular mass H has factor I cofactor activity and has the binding site for C3b (39), its decay accelerating activity is only 1% of the large H form (40). This provides an explanation for H deficiency, low serum C3 protein level, and kidney disease even in the presence of the 45-kDa H protein. Expression of both H isoforms was increased by cytokines (TNF- Generation of RT-PCR fragments and analysis of the entire factor H
coding sequence identified two mutations (one on each allele) that
could directly affect higher order structure. The first, Cys518 Each of these mutations is downstream of nucleotides encoding the
normally secreted 45-kDa protein. Hence, disruption of disulfide bridges in SCR 9 and 16 would affect proper folding only of the newly
synthesized 155-kDa factor H. Presumably this abnormality in folding
accounted for the endoplasmic reticulum retention of factor H in the
H-deficient fibroblasts. Mutations resulting in substitution of
critical cysteine residues have been identified in deficiencies of
other proteins in association with clinical disease. For example, in
Bernard-Soulier disease, a Cys A comparable block in secretion has also been observed in a mutation of
one of the framework cysteine residues in factor XIIIb, another protein
with SCR domains (45). One major difference between the factor H and
XIIIb deficiencies is the fact that the retained and presumably
misfolded factor H apparently was not degraded during a 12-h chase,
whereas the mutant XIIIb was. Two possibilities for this difference
were considered. First, a unique structural feature of the abnormal H
protein, for example, the size or charge (e.g. Arg) of
residues substituted for the cysteine, might affect degradation
pathways. However, on one of the affected alleles the size of the amino
acid substituted (tyrosine and phenylalanine) is approximately the same
for the factor H and the XIIIb deficiency. In the XIIIb deficient, the
retained protein is rapidly catabolized in a transfected surrogate
cell. The rate of catabolism of mutated XIIIb in the patient's cells
was not ascertained. The H-deficient patient may have inherited an
independent mutation that limits efficiency of degradation of
endoplasmic reticulum retained misfolded proteins (46). This mechanism
has been identified in a subset of children with
Four other mutations were identified in cDNA and genomic DNA from
the factor H-deficient patient, but these are likely to be of lesser
importance than the cysteine substitutions. The G1492A mutation does
not produce an amino change. The T1277C mutation yields the
Tyr384 Abundant data are now available that define the biochemical and cellular details of postsynthetic processing and transport of proteins (48-50). Mutations causing an arrest in the maturation process of the nascent polypeptide chain may cause the retention of the protein in the endoplasmic reticulum (51, 52). With these as background, it should be possible to use this genetic deficiency as a probe of H transport mechanisms for secretion of factor H and other SCR protein family members. * The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact. § Present address: Dept. of Pediatrics, Rush Medical College, Chicago, IL 60612. ** Present address: Dept. of Pediatrics, Case Western Reserve University, Cleveland, OH 44106. ![]()
To whom correspondence should be addressed: Dean's Office,
Northwestern University School of Medicine, 303 E. Chicago Ave., Chicago, IL 60611. Tel.: 312-503-0340; Fax: 312-503-7757; E-mail: colten{at}nwu.edu.
1 The abbreviations used are: SCR, short consensus repeat; HBSS, Hanks' balanced salt solution; RT, reverse transcription; PCR, polymerase chain reaction; TNF, tumor necrosis factor; IFN, interferon; PBS, phosphate-buffered saline; PAGE, polyacrylamide gel electrophoresis; kb, kilobase pair(s). We thank Drs. Gerard Garnier, Antonella Circolo, Jeff Teckman, Haibing Teng, and Michael Olszowy for invaluable discussions and advice and Barb Hermann for secretarial assistance.
©1997 by The American Society for Biochemistry and Molecular Biology, Inc. This article has been cited by other articles:
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