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Volume 272, Number 40,
Issue of October 3, 1997
pp. 25176-25183
©1997 by The American Society for Biochemistry and Molecular Biology, Inc.
Genomic Organization of Human and Mouse Genes for Vascular
Endothelial Growth Factor C*
(Received for publication, June 2, 1997, and in revised form, July 24, 1997)
Dmitri
Chilov
§,
Eola
Kukk
¶,
Suvi
Taira
,
Michael
Jeltsch
,
Jaakko
Kaukonen
,
Aarno
Palotie
,
Vladimir
Joukov
and
Kari
Alitalo
From the Molecular/Cancer Biology Laboratory, Haartman Institute,
PL21 (Haartmaninkatu 3), University of Helsinki,
Helsinki 00014, Finland
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
FOOTNOTES
ACKNOWLEDGEMENTS
REFERENCES
ABSTRACT
We report here the cloning and characterization
of human and mouse genes for vascular endothelial growth factor C
(VEGF-C), a newly isolated member of the vascular endothelial growth
factor/platelet-derived growth factor (VEGF/PDGF) family. Both VEGF-C
genes comprise over 40 kilobase pairs of genomic DNA and consist of
seven exons, all containing coding sequences. The VEGF homology domain
of VEGF-C is encoded by exons 3 and 4. Exons 5 and 7 encode
cysteine-rich motifs of the type C6C10CRC, and
exon 6 encodes additional C10CXCXC motifs typical of a silk protein. A putative alternatively spliced rare
RNA form lacking exon 4 was identified in human fibrosarcoma cells, and
a major transcription start site was located in the human VEGF-C gene
523 base pairs upstream of the translation initiation codon. The
upstream promoter sequences contain conserved putative binding sites
for Sp-1, AP-2, and NF- B transcription factors but no TATA box, and
they show promoter activity when transfected into cells. The
VEGF-C gene structure is thus assembled from exons encoding
propeptides and distinct cysteine-rich domains in addition to the VEGF
homology domain, and it shows both similarities and distinct
differences in comparison with other members of the VEGF/PDGF gene family.
INTRODUCTION
The process of growth and development of new blood vessels from
preexisting ones is termed angiogenesis. Angiogenesis plays a critical
role in providing growing tissues with oxygen and nutrients and also
occurs in some pathological conditions, including tumor growth and
metastasis, inflammatory lesions, wound healing, and endocrine diseases
(1). Specific growth factors for the vascular endothelium, namely
vascular endothelial growth factor
(VEGF),1 VEGF-B, VEGF-C, and
placenta growth factor (PlGF) form a subfamily of the platelet-derived
growth factor family (2-5). Certain other angiogenic growth factors
may also act indirectly on endothelial cells via the induction of VEGF
secretion in adjacent cells (4, 6). Besides angiogenesis, VEGF is
implicated in vasculogenesis or formation of blood vessels de
novo by in situ differentiation from mesodermal
precursor cells (7). Both vasculogenesis and angiogenesis appear to be
further regulated by inhibitory signals from cells and pericellular
matrices (8, 9).
In situ hybridization studies have revealed that the three
VEGF receptors VEGFR-1 (Flt-1), VEGFR-2 (Flk-1/KDR), and VEGFR-3 (Flt4)
have specific, although partly overlapping, expression patterns in
developing fetal tissues (10). VEGFR-3 expression has been localized in
early embryonic blood vessels, especially in regions where the
sprouting of developing lymphatic vessels takes place during the
embryonic period (11). Its continued expression primarily in the
lymphatic endothelium of adult tissues suggests that it functions as a
regulator of these vessels. Notably, the expression of VEGF-C is often
found in mesenchymal tissues surrounding the developing lymphatic
vessels (12), and overexpression of VEGF-C induces lymphatic
hyperplasia in transgenic mice (13).
Amino acid sequences of the PDGF/VEGF growth factor family are
distinguished by eight conserved cysteine residues. In the case of
PDGF, the cysteine residues have been shown to be essential for the
correct folding and dimerization of the protein (14, 15), although
activity was preserved when the interchain disulfide bonds were mutated
(16). The VEGF-C dimers consist of polypeptides of 29- and 31-kDa,
generated by proteolytic cleavage of the precursor between residues 227 and 228, and 21 kDa, produced via further N-terminal cleavages
(17-19). In its C terminus, the VEGF-C precursor contains a unique
domain of cysteine rich sequences resembling those of a silk protein.
Other VEGF/PDGF family members typically have short C-terminal
stretches of basic amino acid residues, which are encoded by
alternatively spliced mRNAs and mediate VEGF binding to heparan
sulfate proteoglycans (20).
The isolation and characterization of the VEGF gene promoter has been
reported from human, rat, and mouse species (21-23). The human
promoter was shown to contain multiple binding sites for Sp-1, AP-1,
and AP-2 transcription factors and hypoxia-regulated elements (21-23).
This promoter is TATA-less and responds to various effectors, including
hypoxia, tumor necrosis factor- , and basic fibroblast growth factor
(24). A 1.2-kb 5 -flanking region of the mouse VEGF gene contains basal
promoter activity (21, 23). However, although the promoter also has a
hypoxia-regulated element, VEGF gene induction by hypoxia is also
effected via mRNA stabilization (25).
We report here the cloning and characterization of the human and mouse
VEGF-C genes. The genomic structure of the VEGF-C gene has been
analyzed, and one alternatively spliced human mRNA isoform is
described. We show that human genomic fragments containing the
transcription initiation site are sufficient for basal promoter activity in transfected cells.
MATERIALS AND METHODS
Isolation of Human and Mouse Genomic Clones
A human genomic
library in bacteriophage EMBL-3 (CLONTECH) was
screened using a PCR fragment corresponding to nucleotides 632-746 of
human VEGF-C cDNA (GenBankTM accession number X94216).
One positive clone termed 3 was obtained, and the insert was
subcloned as a 14-kb XhoI fragment into the pBluescript II
SK(±) vector (Stratagene). Restriction endonuclease digestion and
hybridization analysis indicated that clone 3 contains exons 2 and
3. The screening was continued using a fragment from the 5 -noncoding
region of the cDNA (bp 1-95). Of two positive clones, clone 5
contained exon 1 and the putative promoter region. To isolate
additional clones encompassing further exons, purified DNA from a P1
plasmid clone 7760 (26) was used. EcoRI subclones of the P1
insert DNA containing human VEGF-C cDNA homologous sequences were
isolated, and three different fragments were obtained, which contained
the remaining exons.
About 106 plaques of bacteriophage FIX II library
(Stratagene, La Jolla) containing 129SV mouse genomic DNA were screened with VEGF-C cDNA probes. Five cDNA fragments of human and mouse origin were used: 1) a PCR-amplified fragment corresponding to bp
495-1660 of human cDNA sequence (GenBankTM accession
number X94216), 2) the full-length mouse cDNA (accession number
U73620), 3) a fragment of a truncated mouse cDNA clone corresponding to bp 300-655, 4), a similar fragment corresponding to
bp 498-655, and 5) a BstXI-EcoRI fragment of
mouse cDNA (bp 1370-1816). Lambda inserts varying from 10 to 15 kb
in size were subcloned into pBluescript SK+ (Stratagene, La Jolla, CA).
Computer analysis of the promoter region was performed with the
MatInspector program (23).
Analysis of mRNA Expression
Polyadenylated RNA was
isolated from NS-ø plasmacytoma, PYS-1 parietal yolk sac tumor (a kind
gift from Dr. Eero Lehtonen), C2C12 myoblast,
WEHI-3 myelomonocyte, HeLa human cervical adenocarcinoma, and LLC Lewis
lung carcinoma cell lines, and, as a positive control, from the human
lung carcinoma HT-1080 cell line. The cells were starved overnight in
media containing 0.2% fetal calf serum and then stimulated either with
10% of fetal calf serum or with 5 ng/ml
12-O-tetradecanoylphorbol-13-acetate for the indicated
periods of time. Polyadenylated RNA was isolated, and 5 µg of each
sample was electrophoresed in a 0.8% agarose gel containing
formaldehyde and blotted onto Hybond-N (Amersham Corp.) filters. Blots
were subsequently hybridized with radiolabeled probes specific for VEGF-C exons 4 (bp 713-836) or 2-4 (bp 335-836) or for the the full-length mouse cDNA and washed in stringent conditions. Mouse -actin probe (CLONTECH) was used as a
control.
RT-PCR Analysis of Splice Variants
A human HT-1080
fibrosarcoma cell cDNA library in gt11 vector
(CLONTECH, HL1048b) was screened using the 153-bp
human VEGF-C cDNA fragment described previously (18). Nine positive
clones were picked and analyzed by PCR amplification using primers 1 (5 -CACGGTTATGCAAGCAAAG-3 ) and 2 (5 -AACACAGTTTTCCATAATAG-3 ), flanking bp 494-1661 (X94216). PCR was carried out at an annealing temperature of 55 °C for 25 cycles. Five out of nine clones were of
the expected length of 1147 bp, and one was shorter. Both types of
fragments were cloned into the pCRTMII vector (Invitrogen)
and analyzed by sequencing. The human cDNAs and cDNA libraries
analyzed by PCR were made from placenta (Invitrogen A900-11), fetal
lung (CLONTECH HL3022s), and heart
(CLONTECH PT1156-2). The poly(A)+ RNA
was analyzed by RT-PCR using oligonucleotides 3 (5 -ATAGATGTGGGGAAGGAGTTT-3 ) and 4 (5 -CATAAAATCTTCCTGAGCC-3 ) (bp
765-1143) or 5 (5 -TCCTTCCACCATGCACTTGC-3 ) and 6 (5 -CAGAAAACCAGTCTT-3 ) (bp 350-1806). Reverse transcription employed
the avian myeloblastosis virus enzyme and oligo(dT) priming and was
carried out at 42 °C for 1 h. PCR was carried out at an annealing temperature of 56 °C for 30 cycles.
To study potential splicing variants of mouse VEGF-C, the RT-PCR
amplification employed 2 µg of the RNA, avian myeloblastosis virus
polymerase, and oligo(dT) for priming. 2 µl of the cDNA mix was
used for PCR amplification of the coding region of VEGF-C cDNA. 30 cycles of amplification were carried out using sense primer 7 (5 -CCCCAGCCTGCGCCAGCCA-3 ), antisense primer 8 (5 -GTGACTGACTGAAAACTGGTATG-3 ) and DynazymeTM polymerase
(Finnzymes) under the following conditions: 95 °C for 60 s, 62 °C for 60 s, and 72 °C for 75 s.
RNase Protection
RNA antisense probes of 122 and 256 bp
were generated either from NotI-linearized plasmid
containing a 90-bp SacII fragment corresponding to
nucleotides 16 to 74 or from a BanI-linearized plasmid
containing a 166-bp BanI-RsrII fragment
corresponding to nucleotides 45-211 of the human VEGF-C promoter,
using T3 polymerase and [ -32P]UTP. 3 µg of
poly(A)+ RNA was incubated with labeled probe at 55 °C
overnight. Unhybridized RNA was digested with RNase A (10 units/ml) and
T1 (1 mg/ml) at 30 °C for 1 h. The RNases were inactivated by
proteinase K digestion at 37 °C for 15 min, and the samples were
analyzed in 8% sequencing gels.
Analysis of Promoter Activity
Restriction fragments of
genomic DNA containing 5 portions of the first exon were cloned into
the polylinker of the pGL3 reporter vector (Promega) and confirmed by
sequencing. About 10 µg of the individual constructs in combination
with 2 µg of pSV2- -galactosidase control plasmid (ATCC) were
transfected into HeLa or HT-1080 cells using the calcium
phosphate-mediated transfection method. Two days after transfection,
the cells were harvested and analyzed for luciferase activity. For
serum stimulation experiments, the cells were transfected as described
above, and 24 h after transfection they were changed into medium
containing 0.5% bovine serum albumin. About 24 h later, the cells
were stimulated for 4 h with 10% fetal calf serum and assayed for
luciferase activity.
Fluorescence in Situ Hybridization
Mouse fetal fibroblast
culture was established according to Ref. 29, and metaphase spreads
were made using standard procedures. The cosmid probes specific for the
mouse VEGF-C gene (exon 3) and Aga subclones A and B (28) were labeled
with biotin-11-dUTP (Sigma) and digoxigenin-11-dUTP (Boehringer
Mannheim) by nick translation. The fluorescence in situ
hybridization was performed and analyzed as described previously (29,
30).
RESULTS
Preliminary Characterization of the Human and Mouse VEGF-C
Genes
Two DNA clones covering exons 1, 2, and 3 of the human
VEGF-C gene and several clones covering exons 1-7 of the mouse VEGF-C gene were isolated from human or mouse genomic DNA libraries using
VEGF-C cDNA fragments as probes. Three additional genomic fragments
containing exons 4-7 of the human gene were subcloned from a P1
plasmid clone (26). To determine the genomic organization, the clones
were mapped using restriction endonuclease cleavage, Southern blotting,
and hybridization analysis. The coding regions and exon-intron
junctions were partially sequenced. The resulting exon-intron
organization of the human and mouse VEGF-C genes are shown in Fig.
1A. As can be seen from the
figure, both the human and mouse VEGF-C genes consist of seven exons,
which all contain coding sequences. In Fig. 1B, the known
structures of other genes of the VEGF family are shown for comparison.
The sequences of all VEGF-C exon-intron boundaries conform to the
consensus splicing signals (Fig. 2). The
length of the intron between exons 5 and 6 was determined by nucleotide
sequencing to be 301 bp in the human gene and 350 bp in the mouse gene.
The length of the intron between exons 2 and 3 of the human gene was
determined by restriction mapping and Southern hybridization to be
approximately 1.6 kb. The length of other introns both in the human and
mouse genes varied from 4.5 to over 10 kb (Fig. 2).
Fig. 1.
Exon-intron organization of human and mouse
VEGF-C genes and other members of the VEGF family. A, the
exons are shown as boxes and their lengths in bp are
indicated. White boxes, noncoding portions; hatched
boxes, signal sequences; gray boxes: sequences encoding
C- and N-terminal propeptides that are removed during successive steps
of proteolytic processing; black boxes, sequences encoding
the fully processed VEGF-C polypeptide. The cysteine motifs encoded by
the different exons are indicated above the boxes. The translational start (ATG) and stop (TAA) codons
are marked in boldface type, as is the polyadenylation
signal (pA). The TAA stop codon in the 5th exon refers to the
alternatively spliced mRNA form lacking exon 4, which is also
marked. The putative mRNA form lacking exons 2-4 is indicated with
the broken line. Primers used for the RT-PCR are marked with
the numbered arrows; their sequences are detailed under
"Materials and Methods." B, the structures of the VEGF,
VEGF-B, and PlGF genes are shown for comparison. Black boxes
indicate the cooling region, and the striped box
indicates the exon encoding part of the heparin-binding region. The
bars are drawn to scale. The structures of the VEGF, PlGF, and VEGF-B genes are from Refs. 22, 49, 50, and 52.
[View Larger Version of this Image (28K GIF file)]
Fig. 2.
Exon-intron junctions of human and mouse
VEGF-C genes. Nucleotide sequences of the exon-intron borders are
shown; nucleotides present in the cDNAs are indicated as
uppercase letters. The corresponding codons and amino acid
residues encoded at the junctions as well as exon and estimated intron
lengths are indicated. Nucleotide numbering is according to the
published human and mouse VEGF-C cDNA sequences (12, 18).
[View Larger Version of this Image (55K GIF file)]
Analysis of the distribution of the various motifs encoded by both the
human and mouse VEGF-C genes shows that the signal sequence and the
first residues of the N-terminal propeptide are encoded by exon 1 (Fig.
1). The second exon encodes the carboxyl-terminal part of the
N-terminal peptide and the amino terminus of the VEGF homology domain.
The region encoding the 21-kDa form of VEGF-C (19) after proteolytic
processing of both the N and C termini is marked black in
Fig. 1A. The most conserved sequences of the VEGF homology
domain are distributed in exons 3 (containing 6 conserved Cys residues)
and 4 (containing 2 Cys residues). Exon 4 encodes the sequence for the
major proteolytic cleavage site of the VEGF-C precursor between the
VEGF homology domain and the C-terminal propeptide (19). Notably, in
contrast with the other VEGF genes, exon 4 contains a 24-amino acid
C-terminal extension after the last cysteine residues conserved in the
VEGF homology domain.
Although there is no significant homology in the more C-terminal
sequences, exons 5 and 7 each contain a
C6C10CRC motif, resembling that found in exon 7 of VEGF, and exon 6 encodes an almost complete 5-fold repeated
C10CXCXC motif, i.e. the
Balbiani ring-3 protein-homologous domain (18). No sequences
corresponding to exons 5 and 6 of VEGF and PlGF can be identified in
VEGF-C. This is striking, because basic residues encoded by exons 6 of
VEGF and PlGF contain parts of strong heparin-binding motifs. The
length of 3 -noncoding region of the VEGF-C gene is 389 bp in the human
and 395 bp in the mouse gene, followed by a polyadenylation signal. The
3 region of mouse VEGF-C mRNA has three AUUUA motifs implicated in
the rapid turnover of many cytokine mRNAs, including VEGF mRNA
(31); however, only one of these sequences is conserved between the
human and mouse mRNAs.
Chromosomal Localization of the Mouse VEGF-C Gene
The
localization of the mouse VEGF-C gene was determined by fluorescent
in situ hybridization. Initial analysis suggested localization to chromosome 8. As an internal control, we therefore performed cohybridization with a probe specific for the mouse aspartylglucosaminidase gene, previously mapped to chromosome 8 B3
(28). As analyzed from 22 metaphases, VEGF-C was localized telomeric of
the aspartylglucosaminidase gene in chromosome 8, subband B3 (Fig.
3).
Fig. 3.
Chromosomal localization of the mouse VEGF-C
gene. A, a digital image of fluorescent in situ
hybridization on chromosome 8 visualizing the specific location and
order of the VEGF-C (red) and aspartylglucosaminidase
(green) genes in subband B3. B, an idiogram of
mouse chromosome 8 is also shown, illustrating the G-banding of the
chromosome.
[View Larger Version of this Image (33K GIF file)]
Identification of VEGF-C Splicing Variants
We reported
earlier on the hybridization of the VEGF-C cDNA with a major 2.4-kb
mRNA and with a 200-400-bp shorter minor mRNA species in human
tissues (18). Because only one polyadenylation signal was found 367 bp
downstream of the translational stop codon of the human VEGF-C gene,
the length of the VEGF-C mRNA was 2267 bp plus the polyadenylation
sequence, which is approximately the length of the 2.4 transcript. To
clarify the origin of the smaller RNA, we PCR-amplified human cDNAs
from placenta, fetal lung and heart, and the HT-1080 cell line, using
oligonucleotides 1 and 2 indicated in Fig. 1A, and screened
the PCR products in agarose gels for their size. PCR fragments
resulting from amplification of five isolated VEGF-C cDNA clones
from the HT-1080 fibrosarcoma cDNA library were of the expected
length. The sixth clone yielded a somewhat shorter product, with a
deletion of 152 bp, consisting of nucleotides 906-1058 of the
published cDNA sequence. The missing nucleotides corresponded to
exon 4 of the human gene (Figs. 1A and 2). To determine
whether the shorter RNA represented an alternatively spliced version,
we analyzed RNA from PC-3 and HT-1080 cells by RT-PCR using primers 3 and 4 and primers 5 and 6 indicated in Fig. 1A. The
amplified region contained either exons 3-5 or the whole coding region
of the human VEGF-C cDNA. The PCR products were analyzed by
Southern blotting and hybridization with the full-length VEGF-C
cDNA. However, only one major full-length form of VEGF-C could be
amplified (data not shown).
To determine whether alternative splicing occurs in the mouse VEGF-C
gene, mouse cell lines positive for VEGF-C were identified by Northern
blotting and hybridization and analyzed further by RT-PCR. From the
tested cell lines, only the myoblast cell line C2C12 and the Lewis lung carcinoma cell line
LLC appeared to contain a single 2.4-kb VEGF-C mRNA in Northern
blotting. As in several human cells (32), mouse VEGF-C mRNA was
increased 5-fold by fetal calf serum and
12-O-tetradecanoylphorbol-13-acetate treatment of the
expressing cells, but the mobility of the mRNA was not changed
(Fig. 4). The RT-PCR analysis of the
coding region of the previously published mouse cDNA (12) revealed
only one amplification product, suggesting that most of the mouse
VEGF-C mRNA is composed of only one isoform.
Fig. 4.
Northern blotting and RT-PCR analysis of
mouse VEGF-C mRNA. A, a Northern blot showing analysis
of RNA from unstimulated, fetal calf serum and tetradecanoyl-13-phorbol
acetate-stimulated C2C12 cells. For comparison,
RNA from the human HT-1080 cells was used (see Ref. 18). Mouse
-actin probe was used as a loading control. B, analysis
of the VEGF-C open reading frame by RT-PCR. The indicated RNA samples
were processed as described under "Materials and Methods,"
electrophoresed in 1% agarose, blotted, and hybridized to a cDNA
probe covering the whole open reading frame.
[View Larger Version of this Image (44K GIF file)]
Identification of the VEGF-C Promoter Region and the mRNA Start
Site
Restriction mapping of the human VEGF-C clone 5 using a
combination of single and double digestions and Southern hybridization showed that it covers approximately a 6-kb region upstream of ATG, exon
1 and at least 5 kb of intron 1. An 8-kb
XhoI-EcoRI fragment containing exon 1 and 5.4- and 2-kb stretches of 5 - and 3 -flanking sequences, respectively, was
subcloned and further analyzed. The nucleotide sequences of
approximately 0.7 kb of the human and mouse VEGF-C promoters and
5 -untranslated regions are shown in Fig.
5A. Computer analysis was
performed to find potential binding sites for transcription factors.
The human and mouse promoter sequences were compared, and conserved
sites observed in both species are marked in Fig. 5A. They
include putative binding sites for Sp-1, AP-2, and NF- B
transcription factors.
Fig. 5.
Comparison of the upstream regions of the
human and mouse VEGF-C genes and mapping of the human VEGF-C mRNA
start site. A, alignment of human and mouse VEGF-C gene
promoter regions. Putative transcription factor binding sites conserved
in both species are indicated. The promoter region was analyzed using the MatInspector program (23). The transcription start site is
indicated with an asterisk. Consensus binding sites for the relevant transcription factors are boxed: Sp-1, GGGCGG (51); AP-2, 5 -GSSWGSCC-3 (43); NF- B, 5 -GGGRNNYYCC-3 (27). Relevant restriction endonuclease cleavage sites are also shown. The translation initiation codon is marked in boldface type. The GenBankTM
accessions numbers are AF020393 (human) and AF020392 (mouse).
B, schematic structure of the promoter region and the cRNA
probe generated from the SacII fragment using the T3 RNA
polymerase. The 5 -end of the VEGF-C cDNA (X94216) is shown as the
shaded box on the right. The vertical
arrow shows the mRNA start site. C,
poly(A)+ RNA from PC-3 cells, starved or serum-stimulated
HT-1080 cells, and HeLa cells was isolated and hybridized with the
122-bp antisense riboprobe shown in A. Bands corresponding
to the probe and the protected fragment of 76 bp (see A) are
indicated with arrows on the right.
[View Larger Version of this Image (71K GIF file)]
The location of the human VEGF-C mRNA start site was established by
RNase protection assay. Hybridization of an antisense riboprobe
generated from a 166-bp BanI-RsrII genomic
fragment with poly(A)+ RNA from PC-3 cells expressing high
levels of VEGF-C resulted in the protection of the full-length probe
(Fig. 5B and data not shown). The use of a further upstream
90-bp SacII fragment resulted in a protected band of 76 bp
(Fig. 5C). This indicates that a major VEGF-C mRNA start
site (marked +1 in the figure) is located 523 bp upstream of
the ATG translation initiation codon. A similar result was obtained
when using poly(A)+ RNA from serum stimulated HT-1080
cells, whereas an approximately 3-fold weaker RNA signal was obtained
from serum-starved HT-1080 cells or HeLa cells.
Analysis of VEGF-C Promoter Activity
To identify DNA elements
important for the basal expression of VEGF-C in transfected cells, a
set of luciferase reporter plasmids containing serial 5 -deletions of
the human VEGF-C promoter region was constructed. The promoter-reporter
constructs were cotransfected into HeLa cells, which gave a high
frequency of positive cells in control transfections with the
pSV2- -galactosidase control plasmid. The luciferase activity was
normalized to that of the pGL3 luciferase control vector driven by the
SV40 promoter/enhancer. As can be seen from Fig.
6, the 5.4-kb
XhoI-RsrII fragment gave 9-fold higher activity
in comparison with a promoterless vector. Deletion of a 5
XhoI-HindIII fragment of 2 kb did not change the
activity. The activity of the 1.1-kb XbaI-Rsr II fragment was approximately twice that of the pGL3 basic vector, while the activity of the same fragment in the reverse orientation was at background level. Further deletion of the 5
XbaI-SacI fragment caused an increase of the
promoter activity, suggesting the presence of silencer elements in the
region from 1059 to 201. The SacII-RsrII (+74
to +206) fragment yielded only background activity, which was
consistent with the fact that the mRNA initiation site was not
present in this construct (data not shown).
Fig. 6.
Schematic structure of the VEGF-C
promoter-reporter constructs and their activities in transfected HeLa
cells. Constructs were generated by linking putative VEGF-C
promoter fragments to the luciferase reporter gene in the pGL3 vector
(Promega) and introduced into HeLa cells by the calcium
phosphate-mediated transfection method. The luciferase activities
obtained were compared with the activity of a promoterless pGL3basic
construct to obtain a measure of relative promoter activity. For
analysis of the stimulation of promoter activity by serum, transfected
HeLa cells were starved for 24 h followed by serum stimulation for
4 h. The ratio of serum-stimulated/starved luciferase activities
is given. All luciferase values are mean values from at least three
experiments, normalized for transfection efficiency using the
pSV2- -galactosidase plasmid.
[View Larger Version of this Image (16K GIF file)]
To determine whether further sequences in the first exon of the human
VEGF-C gene are important for basal expression, an Rsr II fragment
spanning nucleotides +206 to +493 was subcloned between the
XbaI-RsrII fragment and the luciferase reporter
gene. Indeed, the construct obtained showed a 50% increase in activity
in comparison with the XbaI-RsrII fragment.
Effect of Serum Stimulation on VEGF-C mRNA
Expression
Because the increase of VEGF-C mRNA obtained after
serum stimulation may have been due to mRNA stabilization or an
increased transcription rate, we sought to elucidate whether serum
stimulates VEGF-C promoter activity. VEGF-C promoter constructs were
transfected into HeLa cells, and the transfected cells were
subsequently stimulated with serum as described under "Materials and
Methods." As can be seen from the data listed in the right-hand part
of Fig. 6, the 1.1-kb XbaI-RsrII promoter
construct yielded a 2-fold increase of activity upon serum stimulation,
whereas the same fragment in the reverse orientation showed no
response. The other VEGF-C promoter constructs also showed
up-regulation, ranging from 1.4- to 1.6-fold. However, no significant
increase was seen in the activity of the control vector. The
XhoI-RsrII promoter construct gave only a
1.7-fold induction upon serum stimulation upon transfection into HT1080
cells (data not shown). For comparison, the increase of the VEGF-C
steady-state mRNA after 4 h of serum stimulation was about
1.7-fold in HeLa cells and about 3-fold in HT-1080 cells.
DISCUSSION
VEGF-C is the fourth member of the VEGF subfamily of PDGF-related
growth factors and the largest VEGF gene described so far. The genomic
structures of the previously described members, VEGF, VEGF-B, and PlGF
show a high degree of similarity between each other in exon-intron
junctions and some similarities of alternative splicing. In the case of
VEGF-C, the exon structure resembles that of the other VEGF family
members, particularly in exons 3 and 4 encoding the core growth factor
domain, which contains the eight cysteine residues and the signature
sequence PXCVXXXRCXGCC conserved in
all PDGF/VEGF family members. The most variable parts of these genes
are the regions encoded by the sixth and seventh exons, which are
alternatively spliced in all other members except VEGF-C. A short fifth
exon is present in all splicing variants of the other genes, but VEGF-C
appears to lack such an exon. Instead, there is a C-terminal extension
in the sequences encoded by exon 4. Also, sequence corresponding to
exon 6, which encodes part of a heparin binding domain present in
VEGF145, VEGF165, VEGF189, and
PlGF152 is missing in VEGF-C (22, 33).
All VEGFs have a cysteine-rich C terminus. In the case of VEGF-C, the
cysteine-rich domain is extended in a repeated motif and divided into
three exons. Exons 5-7 show no significant homology with VEGF,
although the C6C10CRC cysteine motifs, which
are encoded by exons 5 and 7 of VEGF-C may be related to the
CXCXC6C11CRC pattern
distributed in exons 7 and 8 of VEGF (22) and 6A and 7 of VEGF-B (34,
35). The distribution of functional domains in the VEGF-C gene
resembles to some extent that of the PDGF-B gene, where the N- and
C-terminal propeptides are also cleaved off after polypeptide
biosynthesis (36).
The most striking differences between VEGF-C and the other VEGFs
concern the potential alternative splicing variants. We have previously
shown hybridization of mRNA species of 2.4 and 2.0-2.2 kb with the
VEGF-C probe. Lee et al. (37) reported two VEGF-C cDNA
clones containing deletions of 152 or 557 nucleotides corresponding to
exon 4 or exons 2-4, respectively. These variant cDNAs were considered to be the result of alternative splicing. We report here a
similar, alternatively spliced version of VEGF-C lacking exon 4. Deletion of exon 4 would result in a premature stop codon caused by a
frameshift after the alternative splice acceptor of exon 5. This
protein would not contain the C-terminal cleavage site (amino acids 227 and 228) of the precursor and would lack 2 of the 8 conserved Cys
residues of the VEGF homology domain (18). Indeed, a recombinant
protein of the expected size was produced from a baculovirus vector
containing the variant cDNA, but in preliminary experiments, we
have been unable to show that this protein is capable of stimulating
the autophosphorylation of
VEGFR-3.2 Studies of VEGF
crystal structure have shown that the corresponding region contains the
receptor binding sites and essential cysteine residues involved in
inter- and intrachain disulfide bonding (38). All isoforms of the VEGFs
described earlier contain this part of the protein. Furthermore, RT-PCR
analysis suggested that the PC-3 and HT-1080 cells as well as several
tissues express only one major form of VEGF-C. Therefore, the
alternatively spliced mRNA detected in the HT-1080 cell library may
represent a rare transcript that is unlikely to have significant
biological relevance in the cells and tissues analyzed. A similar
conclusion was made from RT-PCR analysis of the mouse VEGF-C coding
region.
The transcription of the human VEGF-C gene starts 523 bp before the
first coding base; thus, the mRNA has a long untranslated 5 -leader. As for the VEGF gene (22), the VEGF-C gene promoter lacks
consensus TATA and CCAAT sequences. Instead, it has putative binding
sites for Sp-1, a ubiquitous nuclear protein that can initiate
transcription from TATA-less genes (39) and a long GC-rich
5 -untranslated region, which is typical for several growth factor
genes and is postulated to have a role in translational regulation (22,
23, 28, 40). In addition, sequences upstream of the VEGF-C translation
start site were found to contain consensus binding sites for the AP-2
transcription factor. This suggests that the cAMP-dependent
protein kinase and TGF- as activators of the AP-2 transcription
factor can regulate VEGF-C transcription (41-43). Besides, we have
shown here that the VEGF-C promoter activity is approximately 2-fold
induced by serum stimulation. The corresponding mRNA increase was
2-5-fold in different cells, although some of this increase could be
attributed to mRNA stabilization (32). Thus, important
serum-responsive elements may be located outside of the promoter
fragments used in the present work, for example in the first intron of
this large gene.
Potential binding site for the NF- B transcription factor important
for the lymphoid and immune systems was also found. NF- B is
associated with rapid response activation mechanisms and is known to be
induced by a variety of inflammatory stimuli, being a mediator of
tissue-specific gene expression (44, 45). The presence of NF- B sites
suggests that NF- B may be implicated in the induction of the VEGF-C
mRNA by interleukin-1 and tumor necrosis
factor- .3
Unlike the VEGF gene, the VEGF-C gene promoter does not contain
putative binding sites for hypoxia-regulated factors. Numerous studies
have shown that another major control point for the hypoxic induction
of the VEGF gene is the regulation of the steady-state level of
mRNA (21, 46, 47). The VEGF mRNA stability is considered to be
determined by the presence of protein-binding sequence motifs in its
3 -untranslated region (5, 25). The 3 -untranslated region of the
VEGF-C gene also contains a motif of this type, but at least our
preliminary analyses indicate that the mRNA steady-state levels are
not increased by hypoxia. Thus, besides the significant differences in
its exon structure and encoded protein domains, the VEGF-C gene also
has interesting differences in its regulation and function in
comparison with the VEGF prototype of this gene family (13, 32).
Interestingly, if gaps introduced into the amino acid sequences for the
purposes of alignment are ignored for calculations, the newly cloned
FIGF/VEGF-D is about 48% identical with human VEGF-C and about 31%
identical with human VEGF (48, 52). On the basis of their multiple
amino acid sequence alignments, VEGF-C and VEGF-D are likely to have
similar structural and functional properties and gene structures.
Perhaps the PDGF-A/PDGF-B and VEGF-C/VEGF-D genes have diverged from
VEGF/VEGF-B and from PlGF earlier than from each other during
evolution.
FOOTNOTES
*
This study was supported by the Finnish Cancer
Organizations, the Finnish Academy, the Sigfrid Juselius Foundation,
the Center for International Mobility (CIMO), the University of
Helsinki, and the State Technology Development Center.The costs of publication of this
article were defrayed in part by the
payment of page charges. The article
must therefore be hereby marked
"advertisement" in accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
The first two authors contributed equally.
§
Supported by a grant from Ida Montini Foundation.
¶
Supported by a grant from Maud Kuistila and Ida Montini
Foundations.
To whom correspondence should be addressed. Tel.:
358-9-1912-6434; Fax: 358-9-1912-6448.
1
The abbreviations used are: VEGF, vascular
endothelial growth factor; PlGF, placenta growth factor; PDGF,
platelet-derived growth factor; VEGFR, vascular endothelial growth
factor receptor; bp, base pair(s); kb, kilobase pair(s); PCR,
polymerase chain reaction; RT-PCR, reverse transcriptase-polymerase
chain reaction.
2
D. Chilov, E. Kukk, S. Taira, M. Jeltsch, J. Kaukonen, A. Palotie, V. Joukov, and Kari Alitalo, unpublished
data.
3
A. Ristimaki, D. Chilov, E. Kukk, S. Taira, M. Jeltsch, J. Kaukonen, A. Palotie, V. Joukov, and Kari Alitalo,
unpublished data.
ACKNOWLEDGEMENTS
We thank Mari Helanterä and Tapio
Tainola for excellent technical assistance.
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Copyright © 1997 by the American Society for Biochemistry and Molecular Biology.
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