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Volume 272, Number 40,
Issue of October 3, 1997
pp. 25394-25400
©1997 by The American Society for Biochemistry and Molecular Biology, Inc.
The Nucleotidylylation of Herpes Simplex Virus 1 Regulatory
Protein 22 by Human Casein Kinase II*
(Received for publication, June 25, 1997)
Clayton
Mitchell
,
John A.
Blaho
§,
A. Louise
McCormick
and
Bernard
Roizman
¶
From The Marjorie B. Kovler Viral Oncology Laboratories, The
University of Chicago, Chicago, Illinois 60637
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
FOOTNOTES
ACKNOWLEDGEMENTS
REFERENCES
ABSTRACT
The products of the genes of herpes simplex
virus 1, the infected cells proteins (ICP) 0, 4, 22, and 27 perform
regulatory functions, are nucleotidylylated, and share the signaling or
recognition sequence (RR(A/T)(P/S)R) that correctly predicted the
nucleotidylylation of viral proteins encoded by UL21,
UL31, UL49, and UL47 genes expressed later in infection. Extracts from uninfected HeLa cells or
casein kinase II purified from sea star nucleotidylylated the ICP22
moiety of a glutathione S-transferase-ICP22
(GST22P) fusion protein with [ -32P]ATP or
[2-3H]ATP. We report that: (i) Purified HeLa cell casein
kinase II specifically labeled a glutathione S-transferase
fusion protein containing the amino-terminal 151 amino acids of ICP22
with [2-3H]ATP. (ii) Nucleotidylylation of GST-ICP22 by
purified enzyme exhibited positive cooperativity (Hill coefficient of 2 and a K of 3.7 µM) and a
Km = 37.7 µM for ATP. (iii)
Nucleotidylylation was inhibited by heparin, casein, or ATP S but not
by ATP S. (iv) Mutation of the signaling sequence from RRAPRR to
LKAPEK abolished nucleotidylylation. We conclude that
nucleotidylylation of proteins by casein kinase II requires the
presence of the signaling or recognition sequence, involves the
cleavage of the phosphodiester bond between the and phosphate,
and need not be preceded by phosphorylation.
INTRODUCTION
The 84 known herpes simplex virus 1 (HSV-1)1 genes form several
groups whose expression is coordinately regulated and sequentially ordered in a cascade fashion at both the transcriptional and
posttranscriptional levels (1, 2) (for review, see Ref. 3). At least
four of the six genes (the first genes to be expressed after
infection), 0, 4, 22, and 27, appear to play a key
regulatory role. The products of these genes, designated as infected
cell proteins (ICPs) 0, 4, 22, and 27 have been shown to (i)
transactivate the transcription of viral genes, both specifically
(ICP4) and promiscuously (ICP0) (4-9) and (ii) to regulate the
processing and levels of mRNA and their corresponding proteins of
all (ICP27) or of 0 and a subset of late ( ) genes (ICP22)
(10-14). Of particular interest with respect to the function of these
proteins is that they are extensively modified posttranslationally. All
four are phosphorylated (15) and ICP4 has been shown to be
poly(ADP-ribosyl)ated both in vitro and in infected cells
(16, 17). More recently, this laboratory reported that these proteins
are also guanylylated and adenylylated (18, 19). This conclusion was
based on the observations that these proteins were labeled in isolated
nuclei with [ -32P]GTP and
[ -32P]ATP, as well as with [2-3H]ATP
where the tritium atom is in the purine ring. The four regulatory
proteins contain a common amino acid sequence RR(A/T)(P/S)R designated
the alpha protein basic (APB) site. The hypothesis that the APB
sequence signals a posttranslational modification was supported by the
observation that it accurately predicted the identity of four
additional viral proteins labeled by
[ -32P]GTP and [ -32P]ATP
(20). We should stress that the genes encoding these proteins were
mapped by first defining the domains of genome encoding
nucleotidylylated proteins from analyses of proteins specified by HSV-1
X HSV-2 intertypic recombinants containing specific regions of the
HSV-2 genome in a HSV-1 background. In the second step, the genes whose proteins are nucleotidylylated were identified.
These earlier studies suggested the possibility that ICP22 was
nucleotidylylated by a cellular enzyme (19). Consistent with this
conclusion, it was shown that an ICP22-GST fusion protein (GST22P) was
nucleotidylylated by an enzyme present in a nuclear extract from
uninfected HeLa cells (21). Also, the addition of GST22P to the
reaction containing [ -32P]ATP and HeLa cell nuclear
extracts inhibited the labeling of at least two host cell proteins (H2
and H3) by [ -32P]ATP. The substrate specificity and
subcellular localization of the nucleotidylylating activity led us to
test the hypothesis that this enzyme might be casein kinase II (CKII).
Subsequent studies showed that GST22P could be nucleotidylylated by
CKII purified from the Sea Star (21) with [ -32P]ATP,
[ -32P]GTP, or [2-3H]ATP but not with
[ -32P]CTP.
Casein kinase II is a ubiquitous serine/threonine eukaryotic kinase
existing as a heterotetramer of either
2 2,  2 2, or    2 where the subunits have an apparent
Mr of 24-28 kDa ( ), 40-44 kDa ( ), and
37-41 kDa ( ) (22). The and  subunits are encoded by
separate but related genes showing 85% homology to each other (23) and
are capable of phosphotransferase activity as monomers (24). The
significance of the divergence in the and  subunits has yet to
be determined. It has been suggested that the subunit has a
regulatory function (25) and that the addition of the subunit to
form the heterotetramer stimulates the phosphorylation activity by at
least 10-fold (24). Kinase activity is inhibited by heparin and
stimulated by the addition of basic peptides such as polylysine. The
subunit is normally phosphorylated, but the subunit may be
phosphorylated in the presence of basic substrates (25); the function
of these modifications is unknown. CKII is predominantly a nuclear
enzyme (26); it can be co-precipitated with a transcription complex
containing ATF1 since it specifically binds to an ATF1-GST fusion
protein (27). CKII has been reported to be present in purified virions of HSV-1(F) (28).
The function and posttranslational modifications of ICP22 have been of
interest to this laboratory for several reasons. In earlier studies
with a virus (R325) containing a carboxyl-terminal truncation of ICP22,
this laboratory showed that ICP22 is required for optimal viral
replication in primary human cell strains and in cell lines of rodent
origin; in these cells, the virus yields and the production of late
( ) proteins are reduced (13, 14). It is relevant to note that ICP22
is phosphorylated by both the UL13 and US3
protein kinases (29) and that the phenotype of viruses lacking the
UL13 kinase was similar to that of mutants lacking the
22 gene, i.e. phosphorylation of ICP22 by
UL13 is required for optimal expression of 0 mRNA,
ICP0, and a subset of proteins (14). However, deletion of both
UL13 and US3 genes from the viral genome did
not affect nucleotidylylation of viral proteins (20).
We now report the following. (i) An activity present in a partially
purified uninfected HeLa cell extract that contains CKII (fraction III)
was able to specifically label a GST fusion protein containing 151 amino acids from the amino portion of the ICP22 protein with either
[ -32P]ATP or [2-3H]ATP. (ii) Heparin
specifically inhibited nucleotidylylation of ICP22 by this extract.
(iii) The CKII present in fraction III was purified to near
homogeneity. (iv) Purified CKII labeled GST-ICP22 fusion proteins in a
positive cooperative manner and had a Km = 37.7 µM for ATP. (v) A GST fusion protein with a mutated APB site was not labeled in our assay. (vi) Casein was not
nucleotidylylated in our assay. We conclude that HeLa CKII, in addition
to phosphorylation with [ -32P]ATP, is capable of
catalyzing a nucleotidylylation reaction inasmuch as glutathione
S-transferase-ICP22 fusion proteins were labeled with
[ -32P]ATP and [2-3H]ATP using
purified CKII.
MATERIALS AND METHODS
Cells and Viruses
The HeLa S3 cell line obtained from the
American Type Culture Collection was grown in Dulbecco's modified
Eagle's medium supplemented with 5% newborn calf serum. HSV-1 strain
F is the prototype HSV-1 strain used in this laboratory (30).
Subconfluent HeLa S3 cultures containing approximately 4 × 106 cells were exposed to 5 plaque-forming units per cell
for 1 h and then incubated at 37 °C in medium containing 2%
newborn calf serum.
Reagents and Chemicals
All protease inhibitors,
tyrosine-agarose, heparin-agarose, nucleotides, and biochemicals,
including heparin, were from Sigma. Q-Sepharose fast flow was from
Pharmacia Biotech Inc. Protein concentration was determined by the
Bradford assay (Bio-Rad). The silver stain kit was purchased from
Diachii (Tokyo, Japan) and was used according to the manufacturer's
directions.
Construction of Plasmids
All plasmids derived in this study
were made by standard procedures described elsewhere (31). Restriction
endonucleases were from New England Biolabs and T4 DNA ligase was from
U. S. Biochemical Corp. Construction of the GST-ICP22 fusion GST22P (pRB4654) was described elsewhere (21). For construction of pRB4829
expressing a GST-ICP22 fusion protein with a mutated APB site (GST22M),
site-directed mutagenesis was done using the M13 "Muta-gene"
protocol as recommended by the vendor (Bio-Rad). The sequence of the
oligonucleotide used for mutagenesis was
5 -GGTGGCCTTAAGGCCCCCCAGAAGCTTGGG; it generated a unique
AflII and a HindIII site in the 22 gene for
ease of cloning. The mutation was verified both by DNA sequencing and
restriction endonuclease cleavage at these unique sites. The sites of
the mutations in ICP22 were R76L, R77K, R80E, and R81K. Plasmid pGEX2T
was obtained from Pharmacia. The plasmid pRB5071, expressing a
GST-ICP22 fusion protein with an additional 6 histidine residues on the
carboxyl terminus was created by insertion of the double stranded
oligo, 5 -CCATCACCATCACCATCACTAAGCTTG-3 with appropriate overhang on
the noncoding strand, into pRB4654.
Preparation and Fractionation of Whole Cell
Extract
Suspension cultures of HeLa S3 cells were grown at
37 °C in 5% newborn calf serum to a density of approximately 3-5
ml of packed cells per liter. All extraction procedures were at
4 °C. The pelleted cells were rinsed three times in 8-10 packed
cell volumes of phosphate-buffered saline (140 mM NaCl, 3 mM KCl, 10 mM Na2HPO4,
1.5 mM KH2PO4, pH 7.4), and the
cells were lysed by resuspension in 1.5 volumes of 20 mM
HEPES (pH 7.8), 520 mM NaCl, 1 mM EDTA, 1 mM EGTA, 1 mM dithiothreitol, 10 µM
L-1-chloro-3-(4-tosylamido)-4-phenyl-2-butanone (TPCK), 10 µM
L-1-chlor-3-(4-tosylamido)-7-amino-2-heptanon-hydrochloride (TLCK), 0.5 mM phenylmethylsulfonyl fluoride, and 0.1%
Nonidet P-40 in 25% glycerol followed by rotating the samples for 60 min at 4 °C. After pelleting the cellular debris, samples were
stored at 80 °C. Prior to fractionation, dry ammonium sulfate was
added directly to the supernatant (fraction I) and mixed thoroughly by
inversion. Initially, a 20% saturation was taken and discarded, and a
60% saturation was pelleted, dissolved in lysis buffer, and then
dialyzed into column buffer (20 mM ethanolamine (pH 9.5), 50 mM NaCl, 1 mM EDTA, 1 mM EGTA,
0.02% Nonidet P-40, 0.5 mM dithiothreitol, 0.5 mM phenylmethylsulfonyl fluoride, 10 µM TPCK,
10 µM TLCK, and 25% glycerol). The dialyzed fraction
(fraction II) was clarified by centrifugation, filtered through a 0.2 micron cellulose acetate filter (Corning) and then the extract was
chromatographed at 4 °C on a Q-Sepharose column using standard
techniques (32). Briefly, after application of fraction II, the column
was rinsed with 1.5-column volumes of column buffer. The bound protein
was then eluted with a 10.5-column volume linear gradient beginning at
50 mM NaCl and ending at 540 mM NaCl. The
fractions were then assayed for the ability to label GST22P as
described below, and the fractions active for nucleotidylylation were
pooled (fraction III).
Purification of CKII from HeLa Cells
Preparation of
fraction III was as outlined above except the concentration of buffer
in the extraction buffer was increased to 50 mM HEPES.
Following ammonium sulfate fractionation, the precipitate was
resuspended in Q-Sepharose column buffer to 0.5 × the starting
volume. The suspension was passed through a Sephadex G-50 column
equilibrated with column buffer, and the volume of the eluate was
reduced by concentration against polyethylene glycol flakes
(Calbiochem). The concentrated protein (fraction II) was filtered
through a 0.45 micron polyvinylidene difluoride membrane, and the
proteins were fractionated on a Q-Sepharose column as described above.
The fractions active for nucleotidylylation were pooled (fraction
III).
To concentrate the pooled sample, fraction III was diluted 2-fold with
50 mM Tris-HCl (pH 8.0), 25% glycerol, reapplied to a 5-ml
Q-Sepharose column, eluted with a 100-ml gradient as described above,
and the active fractions were pooled. Subsequent purification steps
were a modification of the procedure used by J.S. Sanghera, et
al. (33). The Q-Sepharose pool was diluted with an equal volume of
20 mM Tris-HCl (pH 8.0), 1 mM dithiothreitol,
and 2 mM EDTA (Buffer B) containing 1.6 M (35%
saturation) (NH4)2SO4. The extract
was stirred over ice for 10 min and then centrifuged at 10,000 × g for 10 min at 4 °C. The supernatant was removed and
loaded onto a tyrosine-agarose column pre-equilibrated in Buffer B
containing 0.8 M
(NH4)2SO4. The column was developed with a 200-ml decreasing linear gradient starting with 0.8 M (NH4)2SO4 in Buffer
B, ending with Buffer B, and 4-ml fractions were collected. The
fractions containing activity that labeled GST22P with
[ -32P]ATP were pooled, diluted 1:3 with Buffer B, and
loaded onto a heparin-agarose column pre-equilibrated with Buffer B. The column was rinsed with 10-column volumes of Buffer B containing 50 mM NaCl and then the proteins were eluted with a 100-ml
linear gradient from 50 to 800 mM NaCl. The fractions
containing nucleotidylylating activity were pooled and assayed for
purity using SDS-polyacrylamide gel electrophoresis and silver staining
(Diachii, Tokyo, Japan).
Purification of Fusion Proteins from Escherichia coli
The
procedures for the growth, induction, and purification of herpesviral
fusion proteins in E. coli were a modification of procedures
described previously (34). In general, E. coli do not
express herpesvirus proteins stably either because of the high
guanine/cytosine content of viral DNA or the high content of proline in
viral proteins. The following protocol reproducibly generated intact
fusion protein to yields as high as 8 mg/liter of bacterial culture.
Briefly, E. coli BL21 cells containing plasmids that
expressed appropriate fusion proteins were stored in 15% glycerol at
70 °C as a freezer stock. One loop full of the freezer stock
served as the inoculum for 50 ml of L-broth containing ampicillin (100 µg/ml) that was incubated at 37 °C overnight. This 50-ml culture
was used to inoculate 500 ml of L-broth containing ampicillin that was
placed in a shaking incubator at 30 °C and incubated until an
A600 of 0.8 to 1.2 was reached. At that point,
60 µl of a freshly prepared 20%
isopropyl-1-thio- -D-galactopyranoside solution was
added, and the cells where incubated for an additional 2 h.
Pelleted cells were resuspended in 5 ml of ice cold 20 mM Tris-HCl (pH 8.0), 200 mM NaCl (TBS), briefly sonicated on
ice, and 500 µl of Triton X-100 (1/10 volume) was added prior to
pelleting the cellular debris at 10,000 rpm for 5 min in a Sorvall SS34 rotor at 4 °C. For GST22P and GST22M, the supernatant fluid was mixed with 1.0 ml of a 50% slurry of glutathione-agarose beads (Sigma)
in TBS and rotated for 30-60 min. The agarose beads were pelleted and
rinsed four times in 50 ml of TBS. Last, the fusion protein was eluted
from the glutathione beads by two sequential incubations with 1.0 ml of
5 mM glutathione, 50 mM Tris-HCl (pH 8.0) for
30 min at room temperature, and the two elutants were stored separately
at 70 °C.
For GST22PH, the cell extract was prepared as specified above and
allowed to bind overnight at 4 °C with 0.5 ml of a 50% slurry of
Ni-NTA-agarose beads (Qiagen) in TBS. The agarose beads were pelleted
and rinsed 4 times with 50 ml of TBS; the fusion protein was eluted by
three sequential 1-ml volumes of TBS containing 500 mM
imidazole. The pooled eluant was then incubated for 30-60 min at
4 °C with 0.5 ml of a 50% slurry of glutathione-agarose beads in
TBS. The beads were rinsed, and the fusion protein was eluted and
stored as described for GST22P. Protein yield was typically 0.3-0.5
mg/ml.
Nucleotidylylation of Proteins with [ -32P]ATP
and [2-3H]ATP
Fractionated proteins (50 µg) were
added to 50-µl mixtures containing 50 mM Tris-HCl (pH
7.5), 5 mM MgCl2, 30 nM
[ -32P]ATP (3,000 Ci/mmol; Amersham) and 150 µM ATP (Sigma) and incubated at either 15 or 30 °C, as
indicated. Reactions were terminated by the addition of EDTA to 25 mM, which has been shown to completely inhibit the reaction
(18). For reactions containing fusion proteins, the labeling conditions
were the same except that 10 µg of chimeric protein were added to the
mixtures. The reaction mixture was then solubilized in sodium dodecyl
sulfate (SDS) and subjected to electrophoresis in denaturing gels and
autoradiography as described previously or analyzed in a filter binding
assay as described below.
Retention of Labeled Proteins on Nitrocellulose
Filters
The assay was done at 30 °C as described above except
that [2-3H]ATP (23 Ci/mmol; Amersham) was diluted 1:100
into 1 mM ATP, ATP S, or ATP S and then diluted to give
a final concentration of 100 µM ATP (or as indicated) in
the assay. The reaction was terminated by the addition of EDTA to 250 mM. The extent of protein labeling was quantitated in a
nitrocellulose filter binding assay as described previously (21).
Briefly, the labeling mixtures were filtered though nitrocellulose
(BA83) membranes (Schleicher & Schuell) that had been pre-wet in
phosphate-buffered saline and inserted in a "dot-blot" manifold as
recommended by the manufacturer (Life Technologies, Inc.). After the
sample had been added to the wells, the nitrocellulose sheet was rinsed
by filtration with three sequential 0.5-ml amounts of
phosphate-buffered saline filtered through each spot. The membrane was
removed from the apparatus and dried, and the radioactivity retained in
each spot was measured by cutting the sections apart and dissolving the
portions of the membrane in tetrahydrofuran (Sigma), followed by
addition of BCS-NA scintillant (Amersham), and counting in a Beckman
liquid scintillation counter.
Polyacrylamide Gel Electrophoresis, Electrical Transfer of
Electrophoretically Separated Polypeptides to Nitrocellulose,
Autoradiography, and Immunoblotting with Polyclonal
Antibodies
Electrophoretic separations of denatured proteins were
performed on 12% polyacrylamide gels cross-linked with
N,N -diallyltartardiamide containing 0.1% SDS at
1 mA/cm for 15 h. The separated polypeptides were either stained
as indicated or electrically transferred to nitrocellulose sheets in a
gel buffer containing 0.025% SDS at 120 V for 5 h at 4 °C.
Densitometric analysis of the stained gels was performed using an Eagle
Eye II (Stratagene). Labeled proteins were subjected to autoradiography
at 70 °C on Kodak X-OMAT film. Polypeptides were visualized on
nitrocellulose after staining with specific antibodies in an
immunoalkaline phosphatase-coupled reaction (Bio-Rad) or by
immunoluminescence and measured with a chemiluminescence (ECL) kit as
recommended by the vendor (Amersham). The antibody against GST
(SC-138), which was used to visualize all of the fusion proteins, and
the antibody against Erk-1 (SC-94) were from Santa Cruz Biotechnology
(Santa Cruz, CA). The antibodies to the subunit of CKII were from
Upstate Biotechnology Inc. (Lake Placid, NY) or a generous gift of
E. G. Krebs (6461D) as indicated.
RESULTS
Fraction III of the HeLa Cell Extract, Capable of
Nucleotidylylating GST22P, Is Enriched for CKII
Earlier studies
from this laboratory have shown that GST22P can be labeled in
vitro with uninfected HeLa cell nuclear extract using
[ -32P]ATP or [ -32P]GTP, suggesting
that a HeLa nuclear enzyme was required for this modification (21).
Furthermore, several lines of evidence suggesting that this enzyme had
characteristics in common with CKII led to the demonstration that
purified Sea Star CKII (Upstate Biotechnology, Lake Placid, NY) could
label GST22P with either [ -32P]ATP or
[2-3H]ATP in a filter binding assay. Because of the high
background in the labeling reaction with HeLa cell nuclear extracts, we
partially purified the HeLa cell CKII as described under "Materials
and Methods" (fraction III). To verify the presence of CKII in
fraction III, HeLa cell protein was fractionated on Q-Sepharose,
labeled with [ -32P]ATP, separated on a denaturing 12%
gel, transferred to nitrocellulose, and probed with antibodies to
either CKII or Erk-1 using the ECL technique as described under
"Materials and Methods." The immunoblot was probed for Erk-1 since
it is also a nuclear kinase and has an electrophoretic mobility similar
to that of the HeLa cell proteins H2 and H3 reported previously (19,
21). The results (Fig. 1) were as
follows.
Fig. 1.
Autoradiographic images (A) and
immunoluminescent reactivities (B and C) of
fractionated proteins labeled with
[ -32P]ATP. HeLa cell proteins were
isolated, fractionated on Q-Sepharose, labeled at 15 °C with
[ -32P]ATP, separated on a denaturing 12% gel,
transferred to nitrocellulose, and probed with antibodies to either
CKII or Erk-1 using the ECL protocol, as described under "Materials
and Methods." Arrows indicate the positions of CKII,
Erk-1, H1, H2, and H3. The labels H1, H2, and
H3 refer to the nucleotidylylated host proteins that were identified previously (20, 22). Sodium chloride fractions (15-45) from
approximately 0.1-0.4 mM are shown, as well as fraction I
(I), fraction II (II), the flow-through
(FT), and wash (W).
[View Larger Version of this Image (78K GIF file)]
(i) Panel A shows the nucleotidylylation profile of HeLa
cell proteins fractionated on a Q-Sepharose column. Bands H2 and H3
predominate in the flow-through, wash, and in the early (low salt)
elutions. The majority of the other major labeled bands partition in
fractions 33-43. Using a dot-blot apparatus in an in vitro
nucleotidylylation assay with GST22P as the substrate, we observed that
the activity, which specifically labeled GST22P with
[ -32P]ATP, peaked between fractions 37 and 41 (data
not shown), and the pool of these fractions was termed fraction
III.
(ii) Erk-1 (panel C) did not partition with either H2/H3 or
the peak of major labeled bands, whereas CKII (panel B)
eluted in fractions 33-45 and peaked in fraction 39.
From these results we conclude that CKII, but not Erk-1, is present in
the protein fraction (III), which is capable of nucleotidylylating ICP22.
Construction of GST-ICP22 Fusion Proteins
To characterize the
nucleotidylylation of ICP22, we generated a series of GST fusion
proteins (Fig. 2) that contain amino acids 49 to 200 of ICP22. This domain of ICP22 was specifically chosen
because earlier studies showed that it is of a sufficient length to be
nucleotidylylated by an uninfected cell extract as well as by purified
sea star CKII (21). In addition, the amino-terminal fragment of ICP22,
expressed in recombinant virus R325, is nucleotidylylated (19).
Moreover, earlier studies showed that the ABP site could be used to
predict the HSV-1 proteins that would be nucleotidylylated (20),
suggesting that this site is either the labeling site or is involved in
substrate recognition. To provide a negative control for our in
vitro assay, we created GST22M, which has a mutated APB site with
the sequence "LKAPEK" instead of "RRAPRR" at ICP22 amino acids
76-81. In addition, we created a histidine-tagged version of GST22P
consisting of the glutathione S-transferase at the amino
terminus followed by amino acids 49-200 of ICP22 and 6 histidine
residues at the carboxyl terminus (GST22PH). Thus, purification of the
tagged fusion protein by affinity chromatography on Ni-NTA-agarose and
glutathione-agarose should yield only full-length fusion protein (35).
All fusions were in-frame with GST and started at the unique
StyI site of the HSV-1(F) 22 gene.
Fig. 2.
Schematic representation of the ICP22-GST
fusion proteins. Line 1, the prototype orientation of the
HSV genome; the boxes indicate the repeat sequences flanking
the unique long (UL) and short
(US) sequences of HSV DNA. Line 2, the
22 gene showing relevant restriction endonuclease sites; the
striped box and RRAPR refer to the location of
the APB sequence in ICP22. Lines 3-5, the portions of the
ICP22 protein fused to the GST protein (oval). The
constructs containing a portion of the ICP22 protein were as follows:
line 3, GST22P containing amino acids 49-200; line
4, GST22M containing amino acids 49-200 but with mutations R76L,
R77K, R80E, and R81K; line 5, GST22PH containing amino acids
49-200 plus 6 in frame histidine residues. The filled ovals
indicate that the fusion proteins contain intact APB sites, whereas the
open box refers to a mutant APB site with the sequence LKAPEK instead of RRAPRR at ICP22 amino acids 76-81.
[View Larger Version of this Image (16K GIF file)]
Production and Labeling of GST Fusion Proteins with Fraction
III
To show that fraction III was capable of nucleotidylylating
GST22P, we first compared the products isolated during purification of
GST22P, GST22PH, and GST22M by analysis with denaturing gels and
immunoblotting. The purified products were separated in a denaturing
gel, electrically transferred to nitrocellulose, and probed with
antibody SC-138 (specific for GST) as described under "Materials and
Methods." The results (Fig. 3) were as
follows: Coomassie Blue staining shows the bands present in the
fraction containing the purified GST fusion proteins (panel
A). During the synthesis of the fusion proteins in E. coli BL21 cells, proteolytic degradation occurred as seen in
panel A, lanes 1, 2, and 4.
Those incomplete fragments that still contained a functional GST moiety bound to the glutathione resin and were purified with the full-length fusion. Despite the double purification, the lane containing the double
fusion GST22PH also contains some degradation products (panel
A, lane 4), probably due to dimerization of GST (35). Densitometric analysis of the gel represented in panel A (as
described under "Materials and Methods") determined that the top
two bands of lane 1 represent 10% of the Coomassie Blue
staining protein in that lane, whereas the corresponding area of
lane 4 represents 80% of the total (data not shown).
Fig. 3.
Coomassie Blue staining (A) and
immune reactivities (B) of the purified GST fusion
proteins. The purified fusion proteins were separated on a
denaturing 12% polyacrylamide gel and stained with Coomassie Blue, or
transferred to nitrocellulose and probed with antibodies to GST as
described under "Materials and Methods."
[View Larger Version of this Image (51K GIF file)]
All of the proteins corresponding to the major Coomassie Blue staining
bands in the lanes containing GST22P, GST22M, or GST22PH reacted with
antibody against GST (panel B, lanes 5,
6, and 8). The observation that the more rapidly
migrating bands in lane 8 react with the anti-GST antibody
indicate that they are truncated products that may have co-purified due
to dimerization of the GST moiety and not unrelated bacterial
proteins.
In the second series of experiments, freshly prepared GST22P or GST was
incubated with fraction III in the presence of [2-3H]ATP
at 30 °C for 30 min and bound to nitrocellulose membranes as
described under "Materials and Methods." Two sets of reaction conditions were analyzed. In the first, the concentration GST22P or GST
was varied, whereas the concentration of ATP was held constant. In the
second, the amount of GST22P was held constant, and the extent of
adenylylation of this protein was measured as a function of increasing
concentrations of ATP.
The results (Fig. 4, panel A)
showed that within the limits of the experimental design, the amount of
label incorporated into the GST22P by [2-3H]ATP was
proportional to the concentration of the fusion protein in the reaction
mixture. In contrast, the labeling of GST was at a background level and
remained constant, independent of the concentration of the protein.
From the data presented in Fig. 4, panel B, an approximate
Km of 35 µM ATP for the activity in
fraction III was calculated. This value corresponds approximately to
the Km for ATP previously reported for
phosphorylation by CKII (22). This value was also the same as that
observed for labeling GST22P with [ -32P]ATP and
[ -32P]GTP under identical conditions (data not shown).
The labeling of GST22P with [ -32P]ATP was stable to
treatment with HCl and NaOH, suggesting that the bond was stable and
not a transient
intermediate.2
Fig. 4.
Tritiated ATP incorporated into the substrate
as a function of concentration of fusion protein substrate
(A) and ATP (B). The amount of
[2-3H]ATP retained on nitrocellulose by fresh GST22P
( ) and GST ( ) following incubation with fraction III was measured
as described under "Materials and Methods." The amount of
radioactivity present on the filters was determined using liquid
scintillation.
[View Larger Version of this Image (13K GIF file)]
Purification of HeLa Cell CKII from Fraction III
To further
ascertain that the activity identified in fraction III was due to CKII
and not to a contaminating activity, CKII was purified to near
homogeneity as described under "Materials and Methods." The protein
in fraction III was concentrated by application to a second Q-Sepharose
column, the active fractions were pooled,
(NH4)2SO4 was added to 0.8 M, and the sample was fractionated on tyrosine-agarose as a
reverse phase column. The fractions containing the peak of activity
were pooled, diluted, and fractionated on a heparin-agarose column. The
fractions containing the peak of activity were pooled, and the proteins
were separated by SDS-polyacrylamide gel electrophoresis and visualized
by silver staining (Fig. 5, panel
A). The identity of the band corresponding to the subunit of
CKII was identified by immunostaining with a rabbit polyclonal antibody
generously provided by E. G. Krebs (Fig. 5, panel B).
The band with an apparent Mr of 116,000 is enhanced
by a gel artifact, and the other bands in lane 3 above 45 kDa represent less than 20% of the stained material as determined by
densitometry. The other bands present in lane 3, slightly
below those identified as the subunits of CKII, may represent
degradation products that do not react with the antibody, as they were
present in multiple preparations and could not be removed by further
purification steps.
Fig. 5.
Purification of HeLa cell CKII to near
homogeneity. The proteins were separated on a denaturing 12% gel
and stained using silver stain or transferred to nitrocellulose, and
the CKII subunit was visualized using antibody 6461D as described
under "Materials and Methods." Lane 1 contains fraction
III; lane 2 is blank; lane 3 contains purified
CKII; and lane 4 is an immunostaining of the CKII subunit present in the purified fraction.
[View Larger Version of this Image (40K GIF file)]
Labeling of GST Fusion Proteins by Purified CKII
In this
series of experiments, various substrates were incubated with purified
CKII in the presence of [2-3H]ATP. The amount of
tritiated nucleotide incorporated was determined using a filter binding
assay and scintillation counting as described under "Materials and
Methods." The purified CKII nucleotidylylated GST22P but not GST22M
or casein (Fig. 6, panel A),
demonstrating that the reaction is specific for the APB site of GST22P
and not a nonspecific artifact. In addition, the failure to label
GST22M suggests that the sequence RRAPR is required for
nucleotidylylation, although the possibility that the mutation alters
the folding of the GST22M protein and thereby blocks the reaction
cannot be discounted. On the other hand, all three proteins were
labeled by purified CKII using [ -32P]ATP (data not
shown) indicating that the kinase was fully functional. The
nucleotidylylation reaction could not be stimulated by basic substrates
such as polylysine, but as previously demonstrated with Sea Star CKII
(21), labeling of GST22P by fraction III with
[ -32P]ATP, [ -32P]ATP, and
[2-3H]ATP could be inhibited by the addition of heparin
at concentrations below 0.2 µM (data not shown).
Panel B shows the ability of CKII to label GST22P with 1 µM [2-3H]ATP in the presence of 99 µM ATP, or the nonhydrolyzable analogs ATP S and
ATP S. The reaction rate in the presence of ATP and ATP S were
identical, whereas ATP S completely inhibited the nucleotidylylation activity. This observation indicated that nucleotidylylation proceeds through the hydrolysis of the phosphodiester bond between the and
phosphate and that the hydrolysis of the / bond is not required. Thus, nucleotidylylation is a unique modification and does
not require previous phosphorylation, and it does not proceed through
progressive removal of phosphates from the nucleotide.
Fig. 6.
Nucleotidylylation of fusion proteins and
casein by CKII. Proteins were labeled at 30 °C with purified
CKII and [2-3H]ATP and assayed in a filter binding assay
as described under "Materials and Methods." Panel A
shows labeling of 1.0 µM GST22P ( ), GST22
M ( ), or casein ( ). Panel B shows the
effect of nucleotidylylation of GST22P by CKII in the presence of 1 µM [2-3H]ATP and 99 µM ATP
( ), ATP S ( ), or ATP S ( ).
[View Larger Version of this Image (14K GIF file)]
Determination of the Km and Kcat for
Nucleotidylylation by Purified CKII
To characterize the
nucleotidylylating activity of CKII, the Km for both
of its substrates was determined. First, the GST22P concentration was
held constant, and the ATP concentration was varied (Fig.
7, panel A). A double
reciprocal plot yielded a Km of 37.7 µM, a Vmax of 2.08 and a
Kcat of 17.1 pmol/min/µg enzyme for ATP. This
value is identical to the Km determined for ATP
using fraction III and is completely consistent with the Km for ATP reported for the kinase activity of CKII
(22).
Fig. 7.
Determination of the Km
for ATP. 1 µg of GST22P was labeled at 30 °C using purified
CKII and [2-3H]ATP in a filter binding assay and then
quantitated by scintillation counting as described under "Materials
and Methods." Panel A shows initial velocity
(Vi, pmoles/min) versus
increasing ATP concentration. Panel B is the double
reciprocal plot of the data in panel A.
[View Larger Version of this Image (11K GIF file)]
The ATP concentration was next held constant at 100 µM, and the GST22PH concentration was increased. The
results shown in Fig. 8 (panel
A) were analyzed on a double reciprocal plot and did not yield a
linear relationship (Fig. 8, panel B). Repeated efforts
consistently yielded a convex line, suggesting a positive cooperativity
in nucleotidylylation of GST22PH. To test this hypothesis, a plot of
the reciprocal of the initial velocity against the squared reciprocal
of the substrate concentration was made and yielded a linear
relationship (Fig. 8, panel C). This result suggests that
CKII can nucleotidylylate GST22PH in a positively cooperative manner
with an apparent Hill coefficient of 2 and a K of 3.7 µM. Further studies will be required to elucidate the
nature of this positive cooperativity.
Fig. 8.
Determination of the Km
for GST22PH. Proteins were labeled at 30 °C using purified CKII
and 100 µM [2-3H]ATP in a filter binding
assay and then quantitated by scintillation counting as described under
"Materials and Methods." Panel A shows initial velocity
(pmoles/min) versus increasing GST22PH
concentration. Panel B is the double reciprocal plot of the
data in panel A. Panel C shows the comparison of
the reciprocal initial velocity to the square of the reciprocal of the
GST22PH concentration.
[View Larger Version of this Image (12K GIF file)]
DISCUSSION
The salient features and the significance of our results are as
follows: (i) HeLa cell nuclear extract (fraction III) containing CKII
specifically labeled a GST fusion protein containing 151 amino acids
from the amino-terminal portion of ICP22 with [2-3H]ATP.
This domain of ICP22 was previously shown to be nucleotidylylated in
isolated nuclei, as well as by purified Sea Star CKII (19, 21). CKII,
purified to near homogeneity, labeled the substrates GST22P and GST22PH
in a manner similar to that described above for fraction III and to
that reported earlier for purified Sea Star CKII (21). Our analyses
yielded a Km of 37.7 µM and
Kcat of 17.1 pmol/min/mg enzyme for ATP. These
values are of the same order of magnitude as those previously
determined for the Km of ATP for phosphorylation by
CKII. Adenylylation of the fusion protein GST22M, in which the sequence
RRAPRR was replaced with LKAPEK, was substantially reduced relative to
the unmodified polypeptide. These results indicate that CKII
nucleotidylylates proteins and that the sequence RRAPRR is necessary
for this reaction, suggesting that this site is either required for
binding of the enzyme to the substrate or the actual site of the
modification.
(ii) The observation that the activity could be inhibited by ATP S
but not by ATP S suggests that the reaction proceeds through hydrolysis of the / phosphodiester bond of ATP and does not require hydrolysis of the / as would be required for
phosphorylation.
(iii) Nucleotidylylation of GST22PH shows positive cooperativity. It is
conceivable that the the structure of the CKII heterotrimer required
for nucleotidylylation is different from that required for protein
kinase activity. Elucidation of the interaction between CKII and the
substrate nucleotidylylated by this enzyme will require further
studies.
Studies on the HSV-1(F) mutant R325 suggest that although host proteins
H1, H2, and H3 are labeled in uninfected cells, the nucleotidylylation
of viral proteins is a virus-specified process and not a random
reaction of a cellular enzyme. R325 is temperature sensitive and at
39.5 °C it expresses primarily genes. In addition, the
3 -terminal half of the coding domain of the 22 gene had been
deleted, and therefore only the amino-terminal 200 amino acids
containing the APB site are expressed. In an earlier report from this
laboratory it has been shown that in cells infected and maintained at
39.5 °C with R325, only the truncated ICP22 was labeled with
[ -32P]GTP (19) even though the products of the 0,
4, and 27 genes were made in abundance. Both the 0 and 4
gene products are known to be extensively modified posttranslationally
concurrent with the expression of a and/or gene (15, 19). These
observations suggest that nucleotidylylation of the proteins 0, 4, and 27 may require prior posttranslational modification by gene
products expressed later in infection. In addition, recent studies by
Hibbard and Sandri-Goldin (36) suggest that the amino acid sequence necessary for the nucleotidylylation of ICP27 is essential for the
function of the protein. Thus, deletion of a stretch of 13 amino acids
that included the sequence RRAPRT (the ICP27 APB site) is lethal and
precludes the expression of late genes. The specific function conferred
by the nucleotidylylation of viral proteins remains to be elucidated.
It is conceivable that this function differs depending on the protein
that is nucleotidylylated.
FOOTNOTES
*
This study was supported by Grants from the National Cancer
Institute (CA47451) and the National Institute for Allergy and Infectious Diseases (AI124009).The costs of publication of this article were defrayed in part by the
payment of page charges. The article
must therefore be hereby marked
"advertisement" in accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
Supported in part by postdoctoral Grant PF3691 from the American
Cancer Society.
§
Present address: Dept. of Microbiology, Mount Sinai School of
Medicine, New York, NY 10029. E-mail: jblaho{at}smtplink.mssm.edu.
¶
To whom correspondence should be addressed: The Marjorie B. Kovler Viral Oncology Laboratories, The University of Chicago, 910 East
58th St., Chicago, IL 60637. Tel.: 773-702-1898; Fax: 773-702-3791;
E-mail: bernard{at}kovler.uchicago.edu.
1
The abbreviations used are: HSV, herpes simplex
virus; ICP, infected cell proteins; APB, alpha protein basic; CKII,
casein kinase II; GST, glutathione S-transferase; TPCK,
L-1-chloro-3-(4-tosylamido)-4-phenyl-2-butanone; TLCK,
L-1-chlor-3-(4-tosylamido)-7-amino-2-heptanon-hydrochloride; TBS, Tris-buffered saline; ATP S, adenosine
5 -( -thio)triphosphate; ATP S, adenosine
5 -( -thio)triphosphate.
2
J. Blaho and B. Roizman unpublished data.
ACKNOWLEDGEMENTS
We thank Lindsay Smith and Maya
Schreiber for expert technical assistance and E. G. Krebs for the
generous gift of the antibody 6461D. We also thank Dr. James C. Vary
for critical reading of the manuscript.
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