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(Received for publication, May 20, 1997, and in revised form, July 23, 1997)
From the Department of Pharmacology, University of California at
San Diego, La Jolla, California 92093-0640
The regulation of conventional protein kinase Cs
by Ca2+ was examined by determining how this cation
affects the enzyme's 1) membrane binding and catalytic function and 2)
conformation. In the first part, we show that significantly lower
concentrations of Ca2+ are required to effect half-maximal
membrane binding than to half-maximally activate the enzyme. The
disparity between binding and activation kinetics is most striking for
protein kinase C Protein kinase C is a multi-domain family of enzymes that
transduces the myriad of signals resulting in phospholipid hydrolysis (1-3). The amino-terminal regulatory half of the conventional isozymes
comprises three functionally distinct domains as follows: 1) an
intramolecular inhibitory domain, the pseudosubstrate, that occupies
the active site when the enzyme is inactive; 2) two cysteine-rich domains (C1) that are each capable of binding diacylglycerol or phorbol
esters; and 3) the C2 domain that binds Ca2+ and acidic
phospholipids. The C1 and C2 domains function as discrete membrane-targeting motifs (4); binding of ligand to either domain alone
can promote protein kinase C translocation to membranes, but both
domains must be membrane-bound for the high affinity interaction
resulting in maximal activation (3). The carboxyl-terminal half of the
protein comprises the conserved kinase core, followed by a
carboxyl-terminal region whose sequence varies among isozymes.
Understanding the mechanism by which Ca2+ first recruits
protein kinase C to membranes and then activates its kinase activity is
essential to understanding how calcium mobilization regulates the
function of protein kinase C in vivo. Although the
relationship between Ca2+ effects on binding and activity
has not been established, much progress has been made toward describing
the effects of the cation on protein kinase C activation. Since the
initial reports that lipid-stimulated activation of protein kinase C
requires Ca2+ (5), biochemical analyses from several
laboratories have established that Ca2+ decreases the
concentration of negatively charged phospholipids required for maximal
activation (6, 7) or membrane binding (8, 9). It is also well
established that the Ca2+-mediated increase in affinity for
acidic membranes is considerably more pronounced in the presence of
diacylglycerol or phorbol esters (10). The molecular mechanism for this
synergy was recently found to result not from allosteric interactions
between the binding sites for these two ligands but rather because each
cofactor, by separate mechanisms, increases protein kinase C's
affinity for phosphatidylserine (9, 11, 12). Thus, considerably less
diacylglycerol is required to activate protein kinase C as the
Ca2+ concentration is raised, and vice versa, because both
Ca2+ and diacylglycerol cause tighter binding to
phosphatidylserine (and it is this tight binding that results in
release of the autoinhibitory pseudosubstrate from the active site
(13)). The dissociation constant of Ca2+ from protein
kinase C has recently been estimated to be 3 mM in the
absence of lipid and 0.7 µM from the protein kinase
C-lipid complex (11). Furthermore, the enzyme's membrane affinity has been shown to vary linearly with Ca2+ concentration from
the low micromolar to the submillimolar concentration range of this
cation (11).
The stoichiometry of the protein kinase C-Ca2+ complex has
been reported to be 1 (11, 14) to 1 or 2, depending on the isozyme (15), and to up to 8 (8). However, NMR and crystallographic data from
C2 domains analyzed in the presence of >10 mM
Ca2+ (16) or Sm3+ (17) indicate that the
Ca2+-binding pocket coordinates two metal ions for the C2
domains studied; the actual affinities for each cation and whether both are bound in the presence of lipid remains to be established. Despite
great advances in elucidating how Ca2+ is accommodated in
the protein kinase C structure, understanding how this cation affects
the function of protein kinase C awaits further biochemical
characterization.
This contribution examines the role of Ca2+ in regulating
the membrane binding and catalytic function of protein kinase C and how
these functional changes correlate with structural changes. Specifically, we show that 1) membrane binding and activation of
conventional protein kinase Cs display different Ca2+
requirements, with activation requiring higher concentrations of the
cation than membrane binding, and 2) distinct conformational changes
accompany Ca2+-dependent membrane binding and
Ca2+-dependent activation. In addition, we show
that determinants in the carboxyl terminus modulate protein kinase C's
affinity for Ca2+.
Bovine brain L- Polyclonal antibodies against bacterially
expressed catalytic domain and bacterially expressed regulatory domain
of protein kinase C Protein kinase C Sucrose-loaded vesicles (40 mol % POPS, 55 mol % POPC, and 5 mol % diacylglycerol) were prepared as described (19).
Triton X-100:lipid mixed micelles of composition 0-15 mol % brain
phosphatidylserine and 5 mol % diacylglycerol were prepared as
described by Newton and Koshland (20). Phospholipid concentrations in
chloroform were determined by assay for phosphate concentration (21).
Lipids were diluted 10-fold into the assay mixture corresponding to
0.1% Triton X-100 and approximately 100-300 µM lipid
for assays using micelles or 100 µM lipid for assays
using vesicles.
Protein kinase C (typically
3 nM) activity was assayed by measuring the initial rate of
[32P]phosphate incorporation from
[ Protein kinase C (3-30 nM) was incubated
with sucrose-loaded vesicles (100 µM lipid; 40 mol % POPS, 5 mol % diacylglycerol, 55 mol % POPC) and various
Ca2+ concentrations in the presence of 20 mM
HEPES buffer, 0.8 mM DTT, 0.3 mg ml This assay takes advantage of the large increase in
trypsin sensitivity of protein kinase C's hinge region that
accompanies membrane binding (22). For comparison of the two binding
assay methods, protein kinase C (30 nM) was incubated under
conditions described above for the centrifugation assay. Samples were
treated with trypsin (0.12 units ml Protein kinase C (approximately 30 nM) was incubated at 30 °C in the presence of HEPES, DTT
(1 mM final concentration), CaCl2 (1 nM to 5 mM final concentration), Triton X-100
(0.1% w/v final concentration) mixed micelles containing 15 mol % brain phosphatidylserine and 5 mol % diacylglycerol and proteases
(concentrations and incubation times as indicated in the figure
legends). Proteins were separated by SDS-PAGE on 7 or 9%
polyacrylamide gels and visualized by silver staining, or in some
cases, proteins were electrophoretically transferred to nitrocellulose
and labeled with antibodies to protein kinase C via incubation with
alkaline phosphatase-conjugated IgG and detection by the formation of
the insoluble product of 5-bromo-4-chloroindoyl phosphate
hydrolysis.
The dependence of protein kinase C binding or
activity on the lipid composition of vesicles (or micelles) or the
Ca2+ concentration was analyzed by a nonlinear
least-squares fit to a modified Hill equation as described (20). The
apparent association constant, Ka, for binding of
protein kinase C to vesicles was calculated as the fraction of protein
kinase C bound to membranes divided by the product of the fraction of
protein kinase C remaining in the supernatant and the total lipid
concentration (19).
Concentrations of
free Ca2+ were calculated using a computer program kindly
provided by Dr. Claude Klee (23) that takes into account pH,
Ca2+, Mg2+, K+, Na+,
EGTA, EDTA, and ATP concentrations. Binding constants used in this
program were those given by Fabiato and Fabiato (24).
The Ca2+ dependence for the
binding of protein kinase C
Importantly, the centrifugation assay ( Fig.
2A compares the
Ca2+ dependence for membrane binding of three conventional
protein kinase Cs as follows:
Table I.
Comparison of Ca2+ requirements for various protein kinase
C isozymes
Volume 272, Number 41,
Issue of October 10, 1997
pp. 25959-25967
©1997 by The American Society for Biochemistry and Molecular Biology, Inc.

ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
FOOTNOTES
ACKNOWLEDGEMENTS
REFERENCES
II, where the concentration of Ca2+
promoting half-maximal membrane binding is approximately 40-fold higher
than the apparent Km for Ca2+ for
activation. In addition, the Ca2+ requirement for
activation of protein kinase C
II is an order of magnitude greater
than that for the alternatively spliced protein kinase C
I; these
isozymes differ only in 50 amino acids at the carboxyl terminus,
revealing that residues in the carboxyl terminus influence the
enzyme's Ca2+ regulation. In the second part, we use
proteases as conformational probes to show that
Ca2+dependent membrane binding and
Ca2+-dependent activation involve two distinct
sets of structural changes in protein kinase C
II. Three separate
domains spanning the entire protein participate in these conformational
changes, suggesting significant interdomain interactions. A highly
localized hinge motion between the regulatory and catalytic halves of
the protein accompanies membrane binding; release of the carboxyl terminus accompanies the low affinity membrane binding mediated by
concentrations of Ca2+ too low to promote catalysis; and
exposure of the amino-terminal pseudosubstrate and masking of the
carboxyl terminus accompany catalysis. In summary, these data reveal
that structural determinants unique to each isozyme of protein kinase C
dictate the enzyme's Ca2+-dependent affinity
for acidic membranes and show that, surprisingly, some of these
determinants are in the carboxyl terminus of the enzyme, distal from
the Ca2+-binding site in the amino-terminal regulatory
domain.
-phosphatidylserine,
sn-1-palmitoyl-2-oleoylphosphatidylserine
(POPS),1 and
sn-1-palmitoyl-2-oleoylphosphatidylcholine (POPC) were
obtained from Avanti Polar Lipids, Inc.
[3H]L-
-Dipalmitoylphosphatidylcholine
(30-60 Ci mmol
1) and [
-32P]ATP (3000 Ci
mmol
1) were from NEN Life Science Products. Triton X-100
(10%, w/v, aqueous solution) was from Pierce.
sn-1,2-Dioleoylglycerol, trypsin from bovine pancreas
(1.22 × 104 BAEE units mg
1), HEPES,
dithiothreitol (DTT), EGTA, trypsin inhibitor (soybean), and protamine
sulfate were supplied by Sigma. Thermolysin, elastase, chymotrypsin,
endoproteinases Arg-C, Asp-N, Glu-C, and Lys-C, bovine serum albumin,
and alkaline phosphatase-conjugated and peroxidase-conjugated goat
anti-rabbit IgG were obtained from Boehringer Mannheim. Nitrocellulose
(Schleicher & Schuell) was from Midwest Scientific. Calcium chloride
(analytical grade) was purchased from J. T. Baker, Inc. A protein
kinase C-selective peptide substrate
(Ac-FKKSFKL-NH2; (18)) was synthesized by the
Indiana University Biochemistry Biotechnology Facility. All other
chemicals were reagent grade. Unless otherwise noted, experiments were
performed using 20 mM HEPES, pH 7.5, at 22 °C (HEPES
buffer). Protein sequencing was performed by the Harvard Microchemistry
Facility.
II were a gift of Drs. Andrew Flint and Daniel
Koshland, Jr.; a polyclonal antibody against a peptide comprising
residues 645-673 of protein kinase C
II was generously provided by
Lilly, and one against residues 19-32 of protein kinase C
II was
from the laboratory of Dr. David S. Williams.
,
I, or
II were
expressed in Sf21 insect cells (Invitrogen) by infection with
recombinant baculovirus (generous gifts from Robert Bell, Peter Parker,
and Daniel Koshland Jr., respectively) and purified to homogeneity as
described (13). The enzymes were stored at
20 °C in 10 mM Tris buffer, pH 7.5 at 4 °C, 150 mM KCl,
0.5 mM DTT, 0.5 mM EDTA, 0.5 mM
EGTA, and 50% glycerol.
-32P]ATP (50 µM; 3000 Ci
mmol
1) into saturating amounts of a protein kinase
C-selective peptide (50 µg ml
1) or protamine sulfate
(0.2 mg ml
1) as described (13). Reactions were allowed to
proceed for 6 min at 30 °C. The concentrations of CaCl2
and lipid present in the assays are indicated in the figure
legends.
1 bovine
serum albumin, 500 µM EGTA, 60 mM KCl, and in
the presence or absence of 5 mM MgCl2. Membrane
binding was measured by determining the fraction of protein kinase C
bound to sucrose-loaded vesicles after centrifugation for 30 min at
100,000 × g, 22 °C. The amount of protein kinase C
in the supernatant or associated with the vesicles was measured either
by assaying kinase activity toward protamine sulfate as described above
or by Western blot analysis of supernatant and pellet samples.
1; 10 min at
30 °C), and proteolysis was quenched by addition of 0.25 volume of
SDS-PAGE sample buffer. Samples were analyzed by SDS-PAGE (8%
polyacrylamide) followed by electrophoretic transfer to nitrocellulose
membranes and Western blotting with protein kinase C antibodies against
the carboxyl terminus of
II. Quantitative analysis of proteolysis
was carried out by densitometric scanning of the intact protein kinase
C bands with a scanning densitometer (Molecular Dynamics). Percent of
protein kinase C bound to membranes was correlated to the amount of
proteolyzed protein as described (22).
Ca2+ Dependence for Membrane Binding Detected by Two
Independent Assays
II to large unilamellar vesicles (100 µM lipid) containing phosphatidylserine (40 mol %) and
diacylglycerol (5 mol %) is presented in Fig.
1. Binding was detected three ways, using
two independent assays, to ensure that the measured kinetics reflected
properties of the protein-cofactor interaction rather than the assay
system. One assay was conformation-based (
); it detects the marked
increase in proteolytic sensitivity of protein kinase C's hinge region that accompanies membrane binding (approximately 100-fold increase for
protein kinase C
II) (22). The second assay involved physical separation of membrane-bound protein kinase C from free protein kinase
C by centrifugation (19). In the latter, the amount of membrane-bound
protein kinase C was determined either from Western blot analysis (
)
or activity assays using the cofactor-independent substrate protamine
(
). The only compositional difference between the two assays was the
presence of trypsin in the conformation-based assay. The centrifugation
assay has the advantage of being a direct measure of the membrane
association, whereas the conformation-based assay has the advantage of
not involving separation of free enzyme from vesicles and thus avoids
potential perturbation of the equilibrium between the bound and free
enzyme.
Fig. 1.
The Ca2+ dependence of protein
kinase C
II binding to model membranes is the same using two assay
methods. The binding of protein kinase C
II (30 nM)
to vesicles (100 µM lipid) containing 40 mol % POPS, 5 mol % diacylglycerol, and 55 mol % POPC was measured in the presence
of various Ca2+ concentrations by pelleting the
vesicle-bound enzyme (
,
) or by proteolyzing with trypsin (
),
as described under "Materials and Methods." The amount of
membrane-bound protein kinase C was determined from Western blot
analysis (
) or activity assays (
). Binding measurements were
performed in buffer containing 500 µM EGTA;
Ca2+ was added to yield the indicated concentrations of
free Ca2+. Data are representative of two separate
experiments.
[View Larger Version of this Image (14K GIF file)]
,
) and conformation-based
assay (
) yielded similar results; under the conditions of the
experiment, half-maximal binding to vesicles was mediated by
approximately 300 nM Ca2+. At this free
Ca2+ concentration, the enzyme's apparent membrane
affinity was 104 M
1. This
affinity is comparable to that reported for the interaction of protein
kinase C from rat brain with vesicles containing slightly more
phosphatidylserine (50 mol %) but less diacylglycerol (1 mol %) in
the presence of 1 µM Ca2+ (11).
(
),
II (
), and the
alternatively spliced
I (
) which differs from
II in the last
50 residues at the carboxyl terminus. The Ca2+ requirement
for membrane binding differed modestly for these three isozymes; under
the conditions of the assay, the concentrations of Ca2+
mediating half-maximal binding ranged from 0.3 to 1.0 µM
for the three isozymes (Table I). Note
that the concentration of Ca2+ resulting in half-maximal
membrane binding for
II was approximately 3-fold higher in Fig.
2A (and Table I) than that in Fig. 1; this resulted from the
presence of 5 mM Mg2+ in the assay in Fig. 2,
which decreases the membrane surface potential and hence protein kinase
C's membrane affinity (19). Importantly, the apparent Ca2+
affinity of protein kinase C
I was 3-fold higher than the apparent Ca2+ affinity of protein kinase C
II, despite the two
having identical Ca2+-binding sites in the C2 domain.
Furthermore, protein kinase C
I displayed a significantly higher
level of Ca2+-independent membrane binding than the other
two isozymes: 40% of the protein kinase C
I associated with
vesicles in the absence of Ca2+, compared with 15 and
10% for protein kinase C
and
II, respectively. These results
reveal that the very carboxyl-terminal residues of protein kinase C
influence its Ca2+-dependent membrane
interaction.
Fig. 2.
Three Ca2+-dependent
isozymes of protein kinase C display similar Ca2+
requirements for binding to membranes but an order of magnitude difference in Ca2+ requirements for activity. A,
protein kinase C (3 nM)
(
),
I (
), or
II
(
) binding to vesicles (100 µM lipid) was measured in
the presence of 5 mM Mg2+ and various
Ca2+ concentrations using the centrifugation assay as
described under "Materials and Methods." Data represent the
average ± S.E. of the mean of 4, 2, and 7 separate experiments
for
,
I, and
II, respectively. B, activity of
protein kinase C (3 nM) toward selective peptide was
determined under identical conditions to those described in
A except no bovine serum albumin was present, and ATP and
peptide substrate were present. Data show the average ± S.D. of
two experiments performed in sextuplet.
[View Larger Version of this Image (19K GIF file)]
Isozyme
Binding
Activity
µM
µM

0.8
± 0.2
1.5 ± 0.4
II1.0 ± 0.2
38
± 14
I0.31 ± 0.02
4.4 ± 0.6
The Ca2+ requirement for activation differed significantly
among isozymes, and, for two isozymes, this requirement was markedly different from the Ca2+ requirement for membrane binding
(Fig. 2B). The Ca2+ dependence for both
activation and binding was similar for protein kinase C
; however,
both protein kinase Cs'
I and
II required over an order of
magnitude higher concentrations of Ca2+ for half-maximal
activation compared with that required for half-maximal membrane
binding (Table I). Conditions for the membrane binding and activity
assays were identical except that bovine serum albumin (0.3 mg
ml
1) was included in the binding assay (its presence in
activity assays did not affect results (data not shown)) and ATP and
peptide substrate were present in the activity assay (their presence in binding assays does not significantly affect protein kinase Cs' interaction with vesicles2).
Most strikingly, the alternatively spliced
isozymes displayed a
difference in their Ca2+ requirements for activation that
was even greater than the difference in their requirements for membrane
binding; the apparent Km for Ca2+
(for activity) was approximately 10 × higher for protein
kinase C
II compared with protein kinase C
I.
The Ca2+ dependence for activation was found to be
sensitive to the total lipid concentration. Analysis of the data in
Fig. 3 revealed that increasing the lipid
concentration 10-fold resulted in a 10-fold drop in the apparent
Km (from approximately 30 µM in the
presence of 100 µM lipid to approximately 3 µM in the presence of 1 mM lipid). This is
consistent with binding studies by Mosior and Epand (19) showing that
the interaction of protein kinase C with membranes obeys the mass
action law; altering either the total lipid concentration or the total
enzyme concentration affects the amount of protein kinase C that
partitions with the membrane. Thus, reported Km
values for Ca2+ for protein kinase C are specific to
particular assay conditions.
II activity is dependent on the lipid concentration.
Protein kinase C activity toward selective peptide was measured in the
presence of vesicles (100 µM (
) or 1 mM
(
) lipid) containing 40:5:55 mol % POPS:diacylglycerol:POPC. Data
represent the average ± S.D. of triplicate measurements. Data
points at 0.1 µM Ca2+ are slightly offset for
clarity.
Ca2+-induced Conformational Changes
The finding
that protein kinase C requires different Ca2+
concentrations for membrane binding and activation led us to explore whether distinct conformational changes accompany the
Ca2+-dependent membrane interaction and the
Ca2+-dependent activation. In a first set of
experiments, we examined whether the proteolytic sensitivity of protein
kinase C
II was altered with increasing Ca2+
concentrations when in solution or when membrane-bound. Fig. 4 shows that the trypsin sensitivity of
protein kinase C
II, in the absence of lipid cofactors, was the same
in the presence of 100 nM to 5 mM
Ca2+. Under the conditions of the assay, the enzyme was
partially proteolyzed to generate the catalytic domain (approximately
45 kDa) and regulatory half (approximately 35 kDa; does not stain well
by silver) (lanes 2-9). The similar degree of cleavage in lanes 2-9 reveals that the intrinsic activity of trypsin is
not affected by altering the Ca2+ concentration between 100 nM and 5 mM Ca2+ (also established
using BAEE as substrate, not shown).
II proteolyzed with trypsin as a function of increasing
Ca2+ concentrations, in the presence or absence of lipid.
Protein kinase C
II (35 nM) was incubated in the absence
(lanes 2-9) or presence (lanes 11-18) of Triton
X-100 (0.1%) mixed micelles containing 15 mol % phosphatidylserine
and 5 mol % diacylglycerol and the indicated concentrations of
Ca2+; the enzyme was then treated with trypsin (3.7 units
ml
1 in the absence of lipid; 0.37 units ml
1
in the presence of lipid) for 20 min at 30 °C. Native protein kinase
C that was not treated with trypsin is shown in lanes 1 and
10. Samples were analyzed on 9% polyacrylamide gels.
Arrow indicates the 78-kDa intermediate; asterisk
indicates 70-kDa intermediate.
In contrast to the cleavage in the absence of lipid, incubation of
protein kinase C
II with phosphatidylserine:diacylglycerol mixed
micelles resulted in pronounced differences in the enzyme's proteolytic sensitivity as the Ca2+ concentration was
raised. Two sets of changes in proteolytic rates or proteolytic
fragments produced were observed. First, at Ca2+
concentrations sufficient to effect membrane binding, but not activation, the enzyme was markedly more sensitive to proteolysis at
the hinge region as assessed by the increased generation of the
catalytic domain (compare lane 11 (100 nM
Ca2+; no binding) with lanes 12 and
13 (1 and 10 µM Ca2+; under the
conditions of this assay, half-maximal binding required 1 µM Ca2+)). In the presence of
Ca2+ concentrations too low to effect membrane binding (100 nM Ca2+), the enzyme was proteolyzed at a
similar rate as in the absence of lipid (note that the trypsin
concentration in lanes 11-18 (plus lipid) was 10-fold lower
than in lanes 2-9 (no lipid)). This change in proteolytic
sensitivity is the well-characterized exposure of the hinge region upon
membrane binding (22). In addition, a novel 70-kDa intermediate
(asterisk) became more pronounced in lanes where protein
kinase C was bound to lipid but not active (e.g. lanes 12 and 13); a slightly faster migrating band (68 kDa) was
barely visible below this band. A second set of changes in proteolytic
sensitivity occurred as the Ca2+ concentration was raised
to activating levels (e.g. above 500 µM
Ca2+); the 70-kDa intermediate became less apparent and a
78-kDa intermediate (arrow) became apparent. Qualitatively
similar results were obtained whether protein kinase C was incubated
with mixed micelles (Fig. 4) or vesicles (data not shown).
To better understand the Ca2+-induced
changes in protein kinase C's structure, a series of polyclonal
antibodies generated against different determinants on protein kinase C
were used to identify proteolytic fragments. Fig.
5A characterizes the epitope
of each antibody. Protein kinase C
II was proteolyzed so that the
native protein (80 kDa) and 78- (arrow), 70- (asterisk), and 68-kDa intermediates were trapped (the 78- and 68-kDa forms are more apparent when endoproteinase Arg-C is used;
all these fragments co-migrate with the bands generated by trypsin
cleavage). Samples were analyzed by SDS-PAGE and stained with silver
(panel 1) or labeled with four antibodies (panels
2-5). The 78-kDa fragment (arrow) has been previously
characterized and results from activation-dependent cleavage at Arg-19 in the pseudosubstrate of protein kinase C
II
(13). This fragment was recognized by all antibodies except one
generated against the bacterially expressed regulatory domain of
protein kinase C: thus, the epitope for this antibody (anti-regulatory) lies in the first 18 residues of protein kinase C
II. The 70-kDa intermediate (asterisk) was recognized by all antibodies
except an antibody generated against the carboxyl terminus of protein kinase C
II (residues 645-673); this revealed that the 70-kDa form
was proteolyzed at the carboxyl terminus. Antibodies generated against
bacterially expressed catalytic domain (anti-catalytic) and the peptide
sequence from the pseudosubstrate of protein kinase C
II (residues
19-32; anti-pseudosubstrate) recognized native and amino- or
carboxyl-terminally cleaved protein kinase C equally well. Neither the
anti-regulatory or anti-carboxyl-terminal domain antibodies labeled the
68-kDa fragment, indicating that it was truncated at both termini.
Thus, one antibody recognized the first 18 residues of protein kinase C
II (anti-regulatory), one recognized the pseudosubstrate of protein
kinase C (anti-pseudosubstrate), one recognized the catalytic domain
(anti-catalytic), and one recognized the extreme carboxyl terminus of
the protein (anti-carboxyl terminus).
II (30 nM) was digested with endoproteinase Arg-C (4 units
ml
1) in the presence of 200 µM
Ca2+ and mixed micelles of the composition described in
Fig. 5. The proteolytic digests were analyzed by silver (Ag)
staining (lane 1) or by Western blotting with antibodies
generated against the catalytic (Cat) domain (lane
2), the carboxyl terminus (C-term) (lane 3),
the pseudosubstrate (Pseudo) (lane 4), or the
regulatory (Reg) domain (lane 5) of protein
kinase C. The four bands stained by the antibodies correspond to the
four bands stained by silver. B, protein kinase C
II was
proteolyzed with trypsin in the absence of lipid and the presence of 1 µM Ca2+ (lane 2), in the presence
of phosphatidylserine (15 mol %):diacylglycerol (5 mol %):Triton
X-100 (0.1% w/v) mixed micelles, and 1 µM
Ca2+ (lane 3), or in the presence of mixed
micelles and 200 µM Ca2+ (lane 4).
Trypsin concentrations were 60 units ml
1 for lane
2 and 0.6 units ml
1 for lanes 3 and
4. Lane 1 contains untreated protein kinase C. Samples were analyzed by Western blot analysis using the antibodies described in A. Indicated are the 78-kDa fragment,
arrow; the 70-kDa fragment, asterisk; the 45-kDa
catalytic domain, Cat; the 35-kDa regulatory domain,
Reg.
Ca2+ Binding Induces Three Structural Changes in Protein Kinase C
The four antibodies, with epitopes spanning the length of protein kinase C, were used to characterize the tryptic fragments described in Fig. 4. Protein kinase C was partially proteolyzed by trypsin under three conditions, shown in Fig. 5B, when it was 1) soluble (lane 2), 2) bound to phosphatidylserine:diacylglycerol mixed micelles in the presence of 1 µM Ca2+ (lane 3) and thus inactive, or 3) bound to phosphatidylserine:diacylglycerol mixed micelles in the presence of 200 µM Ca2+ (lane 4) and thus active. Labeling with the catalytic domain antibody (lower left panel) shows the 70-kDa fragment was most pronounced when protein kinase C was lipid-bound but inactive (lane 3). The carboxyl-terminal antibody did not recognize this fragment (top left panel) but the regulatory antibody that recognizes the first 18 amino acids of the protein did (bottom right panel). Thus, Ca2+ concentrations sufficient for membrane binding but not activation cause a conformational change that exposes the carboxyl terminus to proteolysis. The conformational changes occurring at activating Ca2+ concentrations were characterized by generation of the 78-kDa fragment, which results from exposure of the pseudosubstrate and cleavage at Arg-19 (13) (Fig. 5B, lane 4; labeled by anti-carboxyl-terminal, anti-catalytic, and anti-pseudosubstrate antibodies, but not the anti-regulatory antibody recognizing the first 18 amino acids; see also Fig. 5A).
The proteolytic pattern resulting from inactivating and activating
Ca2+ concentrations was explored in more detail in the time
courses of trypsinolysis in Fig.
6A. Protein kinase C was
incubated with 1 nM Ca2+ and no lipid (soluble
conformation), with 1 µM Ca2+ and
phosphatidylserine:diacylglycerol mixed micelles (lipid-bound but
inactive), or with 200 µM Ca2+ and
phosphatidylserine:diacylglycerol mixed micelles (lipid-bound and
active) and treated with trypsin for 0-30 min. Under the conditions of
the assay, soluble protein kinase C was relatively resistant to
proteolysis, whereas the lipid-bound enzyme was markedly sensitive to
proteolysis at the hinge to generate the catalytic domain (apparent in
Fig. 6A starting at 1 min time point in the presence of 1 and 200 µM Ca2+). Importantly, the rate of
disappearance of the native (80 kDa) protein kinase C was similar in
the presence of 1 and 200 µM Ca2+, consistent
with the hinge exposure reflecting the lipid-bound conformation of
protein kinase C and being independent of the active state of the
enzyme. The 70-kDa fragment resulting from carboxyl-terminal cleavage
was specific to the incubation with 1 µM
Ca2+; in addition, a truncated catalytic domain was
apparent (this catalytic domain fragment was proteolyzed at the
carboxyl terminus because it was not labeled with
anti-carboxyl-terminal antibodies (data not shown)). Cleavage at the
pseudosubstrate (N-nicked PKC in Fig. 6A) but not
at the carboxyl terminus characterized the proteolytic pattern in the
presence of activating Ca2+ concentrations (lane
14). At this activating Ca2+ concentration, the
cleaved catalytic domain was considerably more stable than at the
non-activating concentration (after 5 min of proteolysis in the
presence of 1 µM Ca2+, the catalytic core is
almost completely proteolyzed at the carboxyl terminus; 200 µM Ca2+ protects this fragment from
additional proteolysis).
II (30 nM) was incubated in
the presence of Triton X-100:lipid mixed micelles (15 mol % phosphatidylserine and 5 mol % diacylglycerol in 0.1% Triton X-100)
and the indicated concentrations of Ca2+ and treated with
trypsin (0.12 units ml
1) (A) or endoproteinase
Lys-C (0.24 units ml
1) (B) for the indicated
times. N-Nicked refers to 78-kDa fragment cleaved at
amino-terminal pseudosubstrate; C-Nicked refers to 70-kDa
fragment cleaved at carboxyl terminus; Cat, to 45-kDa
catalytic domain; Nicked Cat, to catalytic domain cleaved at
carboxyl terminus; Reg, to 35-kDa regulatory domain, and
Nicked Reg, to regulatory domain cleaved at pseudosubstrate.
C, schematic of the primary structure of protein kinase C
II showing the trypsin and Lys-C cleavage sites in the hinge
identified by amino-terminal sequencing (open arrows) and
the trypsin cleavage sites at both termini of the protein localized by
antibody labeling (filled arrows).
Hinge Conformational Change Is Highly Localized
Fig. 6B shows the sensitivity of protein kinase C to endoproteinase Lys-C for soluble, lipid-bound but inactive, and lipid-bound and active protein kinase C. In marked contrast to the cleavage by trypsin, Lys-C did not discriminate between the different forms of protein kinase C; proteolysis at the hinge to generate the catalytic and regulatory domains occurred at the same rate for all three conditions. To localize the site of the conformational change in the hinge, the catalytic domains generated by trypsin or Lys-C cleavage were subjected to amino-terminal sequencing. Fig. 6C shows that trypsin cleaves at two sites, Arg-307 and Lys-309, which are amino-terminal to the single Lys-C site at Lys-320. Thus, the region around residue 320 is equally accessible in all three conformations of protein kinase C (soluble, membrane-bound with or without activity), whereas a region removed by only a dozen residues is masked in the soluble conformation and undergoes a dramatic increase in exposure upon membrane binding.
Other Proteases as Conformational ProbesTable II summarizes the results of treating protein kinase C with a number of proteases. Proteases fell into three classes as follows: those such as elastase, trypsin, and to a lesser extent chymotrypsin and thermolysin that preferentially cleaved the membrane-bound conformation of protein kinase C at the hinge; those such as endoproteinase Glu-C and endoproteinase Lys-C that cleaved at the hinge independently of the membrane-bound conformation; and those such as endoproteinase Arg-C and endoproteinase Asp-N that did not cleave significantly at the hinge. Trypsin, elastase, and endoproteinase Arg-C were unique in being able to detect Ca2+-induced conformational changes occurring upon activation of membrane-bound protein kinase C. Curiously, Mg2+ inhibited the proteolysis at the hinge catalyzed by proteases that detected the hinge conformational change attendant to membrane binding (chymotrypsin, thermolysin, and trypsin) but did not inhibit the hinge proteolysis catalyzed by enzymes that did not discriminate between soluble and membrane-bound protein kinase C (endoproteinases Glu-C and Lys-C). Mg2+ did not inhibit the intrinsic activity of trypsin, assessed using BAEE as a substrate (data not shown), suggesting that Mg2+ may be interacting with the protein in such a manner to alter the hinge accessibility.
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The foregoing data establish that 1)
Ca2+-dependent membrane binding and activation
of conventional protein kinase Cs are differentially regulated by
Ca2+, and 2) distinct conformational changes accompany
these two events for the isozyme examined, protein kinase C
II.
Kinetic studies reveal that the Ca2+ requirements for
membrane binding and activation of conventional protein kinase Cs
differ, with activation lagging behind membrane binding. Proteolytic
sensitivity experiments with protein kinase C
II reveal that one set
of conformational changes accompanies the membrane binding mediated by
Ca2+ concentrations too low to activate the enzyme, and a
second set of conformational changes accompanies activation resulting
from higher Ca2+ concentrations.
Kinetic analyses reveal that
higher concentrations of Ca2+ are required to effect
activation of protein kinase C compared with membrane binding. This
difference is particularly striking for protein kinase C
II, where
approximately 40-fold greater Ca2+ concentrations are
required to half-maximally activate the enzyme compared with the
concentrations promoting half-maximal binding to membranes. This
difference is only 2-fold for protein kinase C
and approximately
10-fold for protein kinase C
I. Importantly, the Ca2+
requirement for binding is similar, within a factor of 3, for protein
kinase C
,
I, and
II; what differs most significantly between
the isozymes is the Ca2+ requirement for activation. Thus,
all three isozymes bind to membranes with similar affinity; however,
some isozymes require Ca2+ concentrations that cause a much
tighter binding to be catalytically competent. One explanation for the
different Ca2+ requirements for membrane binding and
activation is that protein kinase C binds two Ca2+ ions
with differing affinity and different consequences on the structure
(see below) and function of the protein; in this regard, the
Ca2+ site in the C2 domains of synaptotagmin and
phospholipase C
have been shown to accommodate two metal ions (16,
17).
Activation of protein kinase C requires removal of a basic
autoinhibitory domain, the pseudosubstrate, from the substrate-binding cavity in the kinase core (3). One possibility to account for the
discrepancy in Ca2+ concentrations required for binding and
activation is that the tighter membrane binding induced by higher
Ca2+ concentrations provides the energy to release the
pseudosubstrate. For example, an extra kcal mol
1 in
binding energy is gained by a 10-fold increase in binding affinity.
Alternatively, tighter membrane binding may position protein kinase C
closer to the membrane, perhaps promoting domain movements that might
facilitate removal of the pseudosubstrate (for example, interaction
with a basic surface in the regulatory region could neutralize the
patch of acidic residues on the surface of the substrate-binding cavity
that holds the pseudosubstrate in place (26)).
An unexpected finding from this
work is that the Ca2+ requirements for activation and, to a
lesser extent, membrane binding differ between the two alternatively
spliced protein kinase C
isozymes. Notably, these isozymes have
identical regulatory domains and differ only in the kinase domain; the
carboxyl-terminal 52 residues of
II are replaced by 50 residues in
protein kinase C
I, 24 of which are identical to those in protein
kinase C
II (25). Thus, the Ca2+-binding site in the C2
domain must be influenced by interactions with the carboxyl terminus of
the kinase core. The carboxyl terminus has recently been shown to be
critical to protein kinase C's regulation: phosphorylation at this
region influences the enzyme's subcellular localization (27, 28); this
region has been reported to promote the binding of protein kinase C
II but not
I to actin (29), and deletion of this region prevents
expression of mature, active protein kinase C (30). The finding that
the Ca2+ requirement for activation is significantly
greater than that for binding in protein kinase C
II compared with
I suggests that this carboxyl-terminal interaction may be more
critical in allowing catalysis than in modulating membrane binding.
A second line of evidence supports the regulation of protein kinase
C's Ca2+ interaction by carboxyl-terminal interactions.
All protein kinase C isozymes contain two conserved phosphorylation
sites on their carboxyl terminus (27); we recently showed that
phosphorylation at one of these positions (Ser-660 in protein kinase C
II) increases protein kinase C's affinity for Ca2+ by
an order of magnitude (28). Whether the carboxyl terminus interacts
directly with the C2 domain, perhaps providing coordination sites for
Ca2+, or whether it indirectly modulates the conformation
of the Ca2+-binding site remains to be established.
Using proteases as conformational probes, three
regions of protein kinase C
II were identified that undergo
structural changes representative of membrane binding and of
activation: 1) the hinge, which becomes exposed whenever protein kinase
C binds lipid, independently of the active conformation, 2) the
carboxyl terminus, which becomes exposed only when protein kinase C is
bound to lipid in its inactive conformation, and 3) the
pseudosubstrate, which becomes exposed when protein kinase C is
active.
The increased proteolytic sensitivity of the hinge accompanying
membrane binding was originally noted by Nishizuka and co-workers (31)
and forms the basis for the membrane binding assay (22) illustrated in
Fig. 1. An unexpected finding from the present contribution is that the
region in the hinge that becomes proteolytically labile upon membrane
binding is highly localized; Arg-307 and Lys-309 are protected from
proteolysis by trypsin when protein kinase C is in solution and become
2 orders of magnitude more sensitive to proteolysis upon membrane
binding. In sharp contrast, Lys-320 is equally accessible to
proteolysis by endoproteinase Lys-C whether protein kinase C is soluble
or membrane-bound. This finding suggests a highly localized "hinge"
motion, as depicted in Fig. 7. The
increased proteolytic sensitivity of membrane-bound protein kinase C to
elastase, chymotrypsin, and thermolysin suggests that the sites of
cleavage of these proteases are localized near the trypsin site. An
alternative explanation is that these proteases recognize interaction
sites elsewhere on protein kinase C that are better exposed when
protein kinase C is membrane-bound, so that proteolysis of the hinge is
accelerated without sequences in this region being more exposed.
Importantly, the hinge conformational change does not result in activation of protein kinase C; membrane-bound but inactive protein kinase C has an exposed hinge, and this exposure is not influenced by the activation induced by increasing Ca2+ concentrations. Consistent with this, binding of protein kinase C to non-activating acidic membranes (e.g. containing phosphatidylserine but no diacylglycerol or containing acidic phospholipids other than phosphatidylserine (9)) also is accompanied by exposure of the hinge (7). Conversely, the active conformation of protein kinase C does not require hinge exposure; we showed previously that cofactor-independent activation by protamine sulfate does not expose the hinge of protein kinase C (26). Thus, the hinge exposure results from protein kinase C's interaction with phospholipid, independently of the activation state of the kinase. One possible mechanism is that tethering of protein kinase C to acidic membranes via the C2 domain promotes the hinge conformational change; this domain, which contains the binding sites for Ca2+ and acidic phospholipids, is adjacent to the hinge region (3).
The exposure of the carboxyl terminus to proteolysis is particularly interesting in that it occurs only when protein kinase C is membrane-bound but inactive; i.e. concentrations of Ca2+ that promote membrane binding but not activation result in exposure of the carboxyl terminus, but higher concentrations of Ca2+ that promote activation result in masking of the carboxyl terminus to proteolysis. One possibility is that activation promotes a domain movement that masks the carboxyl terminus, for example release of the pseudosubstrate from the active site might mask the carboxyl-terminal cleavage site. A second is that tight membrane binding of protein kinase C prevents access of trypsin to the carboxyl terminus. A third possibility is that the carboxyl terminus is a flexible region of the protein that transiently "opens up" as protein kinase C makes its initial low affinity membrane interaction (a conformation that can be trapped by having non-activating Ca2+ concentrations present in in vitro assays) but closes up again when the enzyme binds tightly to membranes and adopts the active conformation. Several lines of evidence suggest that the carboxyl terminus of protein kinase C is flexible. Modeling studies of protein kinase C's carboxyl terminus, based on the crystal structure of protein kinase A, suggest that it is a random coil which, by analogy to protein kinase A, wraps around the top of the kinase domain (26). However, the ability to autophosphorylate at residues in the carboxyl terminus suggests a flexible coil that can access the active site (27, 32). The proteolytic sensitivity is also consistent with a flexible loop or hinge.
The third conformational change detected by proteases involves the
activation-dependent exposure of the pseudosubstrate (13). We have previously shown that Arg-19, the first residue in the pseudosubstrate of protein kinase C
II, becomes sensitive to proteolysis only when protein kinase C is active and that this exposure
is independent of how protein kinase C is activated; activation by its
second messengers, by cofactor-independent activators such as protamine
sulfate or by short chained phosphatidylcholines, is accompanied by
pseudosubstrate exposure (13, 26). In this contribution, we show that
membrane binding alone is not sufficient for pseudosubstrate release
and that activating concentrations of Ca2+ are required to
release the pseudosubstrate.
Fig. 7 presents a possible model illustrating the low affinity membrane interaction that does not result in activation, and the high affinity membrane interaction that does result in activation. Potential Ca2+-dependent conformational changes that accompany each interaction are also illustrated and explained in the legend. This model assumes that the increased proteolytic sensitivity of defined regions of protein kinase C that accompany membrane binding and activation result from conformational changes. As discussed above, protease accessibility could be affected as a result of other interactions. For example, juxtaposition of protein kinase C with the membrane could prevent trypsin from accessing the carboxyl terminus.
In summary, these data reveal that
Ca2+-dependent membrane binding is not
sufficient to activate protein kinase C and that the discrepancy
between Ca2+ requirements for membrane binding and
activation varies depending on isoform, and, significantly, varies
considerably between two isozymes that differ only in the carboxyl
terminus. In addition, membrane binding and activation of protein
kinase C
II appear to be accompanied by two distinct sets of
conformational changes involving the amino terminus, the hinge, and the
carboxyl terminus. The movement of three separate domains spanning the
entire protein suggests complex interplay between the
membrane-targeting domains, the kinase core, and the carboxyl terminus.
The finding that Ca2+ differentially regulates protein
kinase C
I and
II reveals, in particular, that the carboxyl
terminus modulates Ca2+ binding; the carboxyl terminus may
thus provide a mechanism for differential Ca2+ regulation
of two very closely related isozymes that are often both present in the
same cell type.
To whom correspondence should be addressed. Tel.: 619-534-4527;
Fax: 619-534-6020; E-mail: anewton{at}ucsd.edu.
We thank Andrew Flint and Daniel Koshland for a generous gift of the catalytic and regulatory domain antibodies, Lilly for the carboxyl-terminal antibodies, and David Williams for the pseudosubstrate antibodies. We thank Sherry Cai for protein purification, and Calbiochem and Avanti Polar Lipids for participating in the National Science Foundation Young Investigator Program.
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