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(Received for publication, February 28, 1997, and in revised form, July 21, 1997)
From the Phosphorylase b kinase (PbK) from
skeletal muscle is a highly regulated oligomer consisting of four
copies of four distinct subunits ( Through allosteric and covalent modification sites on its three
regulatory subunits, phosphorylase b kinase
(PbK)1 integrates neural,
hormonal, and metabolic signals to modulate glycogenolytic flux in
skeletal muscle (for review, see Refs. 1 and 2). Although the The geometric isomers (ortho, meta, and
para) of the homobifunctional cross-linker
phenylenedimaleimide (PDM) were evaluated with the rationale that any
effector-induced perturbations in their cross-linking of PbK could be
interpreted solely on the basis of geometry and span (4.8 Å for
o-PDM to 12 Å for p-PDM (14)). In addition to
forming an PbK was isolated from fast-twitch
skeletal muscle of New Zealand White rabbits (15), dialyzed against a
solution of Hepes buffer (50 mM, pH 6.8), sucrose (10%),
EDTA (0.2 mM), and either used immediately or stored frozen
at Bovine serum albumin (A-9647) was from Sigma, and the catalytic subunit
of cAMP-dependent protein kinase was from Promega. Melittin
was from Sigma, with its concentration determined as described
previously (20). Monoclonal antibodies (mAbs) against the The concentrations of the
PDM cross-linkers (Aldrich) were determined from their absorbance in
dry acetone at 332 nm, the absorption maximum characteristic of the
maleimido functionality. The extinction coefficient at this wavelength
was determined for each isomer through its alkylation of a known excess
of the free thiolate (TNB Cross-linking was carried out at 30 °C at
the indicated time intervals with o-, m-, or
p-PDM. Final concentrations of protein and reagents in the
standard reaction were: PbK, 1.73 µM
The N-(tolyl)succinimides used as inhibitors of
cross-linking were obtained from Aldrich and were used without further
purification.
Apparent molecular masses of the cross-linked species were determined
from comparison with the migration of protein standards: myosin (205 kDa), To measure the effects of cross-linking on
the phosphorylase conversion activity of PbK, cross-linking (at pH 8.2)
was first arrested by an 80-fold dilution in cold Hepes buffer (50 mM, pH 6.8) containing 3.0 mM dithiothreitol.
Control experiments showed that inclusion of this concentration of
dithiothreitol in the dilution buffer did not influence the activity of
PbK in subsequent activity assays. An aliquot of the diluent was then
measured for activity at pH 6.8 by following the incorporation for 5 min at 30 °C of 32P from [ The subunits
of nonactivated PbK were rapidly cross-linked by o-,
m-, and p-PDM (Fig.
1). As judged by coelution of
cross-linked and native enzyme on Sepharose 6B (data not shown), this
cross-linking was intramolecular, i.e. within hexadecamers,
as opposed to between. Based on their mobilities in SDS-polyacrylamide
gels, three general sets of conjugates (a high, intermediate, and low
mass set) were formed by cross-linking the enzyme with each PDM isomer.
The formation of these sets was dependent upon the time of
cross-linking and concentration of cross-linker used, as is discussed
in the following sections.
When nonactivated
enzyme was incubated either with very small amounts of any of the three
PDM isomers (1 PDM:2 When cross-linking was carried out at pH 6.8, but under otherwise
standard conditions (2 min at 30 °C with a 10-fold molar excesss of
cross-linker over Based on the densities of the bands in Fig. 1, greater than 90% of the
Increasing
the concentration of PDM or the time of cross-linking resulted in
increased formation of two additional conjugates with apparent masses
of 225 and 205 kDa, corresponding to the masses of A minor cross-linked
species corresponding to the known mass of an The rapid and relatively
specific cross-linking with concentrations of PDM below PbK suggested
that these reagents might be functioning as affinity cross-linkers,
i.e. that they bind to the enzyme prior to covalently
cross-linking its subunits. To test this possibility, we asked whether
nonfunctional structural analogs of PDM could competitively inhibit
cross-linking. The first PDM analogs tested were their corresponding
disuccinimides, produced by catalytic hydrogenation of the three PDM
isomers; however, none of these disuccinimides was sufficiently soluble under our standard cross-linking conditions to evaluate as an inhibitor. We turned, therefore, to the more soluble monosuccinimide structural analogs o-NTS and p-NTS, both of which
were found to be potent inhibitors of cross-linking by o-
and p-PDM (Fig. 3). Based on
the residual amounts of the Because
activation of PbK is associated with conformational changes, some of
which can be detected by cross-linkers (5, 7, 8, 29), we wished to
determine whether PDM could also distinguish the activated
conformation(s) of the holoenzyme. The allosteric activators ADP and
GDP caused a large increase over controls in the formation of
In contrast to the significant amounts of Melittin, a model calmodulin-binding peptide that is an inhibitor of
PbK (31), did not enhance, with respect to control, the formation of
either Because activation of PbK influenced its
cross-linking pattern, resulting in increased formation of As was observed previously with perturbation of the cross-linking
pattern (Fig. 4A), heparin and melittin also acted
differently than the other effectors in their influence on the
cross-linking-dependent activation. In the case of heparin,
activation was not completely reversed by dilution, even though its
assay concentration was well below its Ka (32), and
cross-linking in its presence did not cause a significant increase over
the non-cross-linked control activity (Fig. 5). These results further
suggest that heparin brings about activation through a mechanism that
is distinct from that of the other activators. Rather than stimulate
the activity of enzyme cross-linked in its presence, the inhibitor
melittin, if anything, caused a slight inhibition (Fig. 5), further
indicating that PDM is a reporter of active conformations of the
enzyme.
PbK underwent intramolecular differential affinity cross-linking
by the three geometric isomers of PDM to form three major conjugates
( Although the number of binding sites for PDM/NTS, their relative
affinities for ligand, and their subunit location are certainly issues
of interest, consideration of these issues is complicated by the fact
that affinity cross-linking has two underlying components, binding and
reactivity, with the latter comprising two separate reactions by the
bifunctional reagent. Thus, even though The cross-linking of PbK by PDM was conformation-dependent
in that stimulators of activity (ADP, GDP, and phosphorylation) caused
a large increase in the formation of The ability of PDM to lock the enzyme in the active form(s) induced by
ADP and GDP further indicates that these cross-linkers are effective
reporters of active conformations of the holoenzyme. Intramolecular
cross-linking has been shown to stabilize given forms of proteins (36),
effectively locking them in specific conformations. For example,
cross-linking by bis(3,5-dibromosalicyl)fumarate has been
reported to lock hemoglobin in its T-state (37). In an oligomer the
size and complexity of PbK, there is undoubtedly a large number of
intersubunit contacts that define its active conformation(s) (38), and
only a small fraction of these are likely to be targeted by PDM.
Nevertheless, our results indicate that in the case of activation by
ADP and GDP, PDM cross-links at least several sites in the activated
enzyme that allow it to remain activated after removal of the
activators. Of the PDM conjugates formed,
Volume 272, Number 42,
Issue of October 17, 1997
pp. 26196-26201
©1997 by The American Society for Biochemistry and Molecular Biology, Inc.
Differential Affinity Cross-linking of Phosphorylase Kinase
Conformers by the Geometric Isomers of Phenylenedimaleimide*
,
¶
Department of Biochemistry, College of
Medicine, the University of Tennessee, Memphis, Tennessee 38163 and the
§ Department of Pathology, Brigham and Women's Hospital and
Harvard Medical School, Boston, Massachusetts 02115


)
4. The
subunit is catalytic, and the remaining subunits are regulatory. To
characterize effector-induced changes in the quaternary structure of
the enzyme, we utilized the ortho-, meta, and
para-isomers of phenylenedimaleimide (PDM), which in addition to having different geometries, also vary 2.5-fold in their
cross-linking spans. Even at concentrations equivalent to the



protomers of PbK, all three isomers caused specific, rapid, and extensive cross-linking of the holoenzyme to form primarily 
dimers, plus smaller amounts of 

and 

trimers.
The formation of these three conjugates was nearly totally inhibited by
a 10-fold molar excess over PDM of N-(o- and
p-tolyl)succinimide, which are chemically inert structural
analogs of PDM. This inhibition suggests that PbK has binding sites for
PDM and that PDM acts as an affinity cross-linker in binding to these
sites prior to forming cross-linked conjugates. The largest effect on
cross-linking in progressing from o- to p-PDM
was on the 

trimer, which is preferentially formed by the
p-isomer. Activation of the enzyme by either
phosphorylation or the allosteric activators ADP and GDP resulted in
large increases in the amount of 

formed, small increases in


, and little change in 
. When cross-linked in the
presence of the reversibly activating nucleoside diphosphates, PbK
remained activated after their removal, indicating that cross-linking had locked it in the active conformation. Our results provide direct
evidence for perturbations in the interactions of the catalytic
subunit with the regulatory
and
subunits upon activation of
PbK.
,
,
and
(calmodulin) regulatory subunits clearly control the activity
of the catalytic
subunit, little is known concerning the mechanisms
through which they exert this control, including the extent to which
their regulatory influence on
is direct versus indirect;
this is especially the case for the larger regulatory subunits,
and
. Phosphorylation (3) or proteolysis (4) of
causes increased
activity of
within the (


)4 holoenzyme, but
evidence for a direct
-
interaction that is altered by this
activation has not been observed. Likewise, multiple means of
activating the holoenzyme cause common conformational changes in the
subunit (5-7); but again, no evidence for alteration of a direct
-
interaction has been observed. In two previous studies,
cross-linking was used successfully to detect changes in the
cross-linking patterns of both the
(8) and
(5) subunits upon
activation of the holoenzyme; but with the cross-linkers used, the
observed changes involved only a second
or
subunit to form
homodimers and did not involve the catalytic
subunit. Even though
cross-linking has been shown to be a potentially promising approach to
probing structural changes associated with activation of the
hexadecameric PbK holoenzyme, it has not been exploited widely because
of the intrinsic difficulty in identifying unambiguously the subunit
composition of cross-linked complexes (techniques used previously with
PbK to analyze such complexes have been limited to approximate mass,
relative susceptibility to proteolysis, and specific radioactivity of
individual subunits (5, 9, 10)). The recent availability of a panel of
subunit-specific monoclonal antibodies against PbK's four different
subunits (11-13) has greatly aided analysis of the subunit composition
of cross-linked complexes (8), which in turn, has encouraged us to
evaluate additional cross-linkers, seeking to discover one capable of
detecting changes in the interaction of the catalytic and regulatory
subunits of PbK upon its activation.

dimer, each isomer cross-linked two
subunits with
an
and with a
subunit; moreover, this cross-linking was
differential, in two senses. First, 

and 

were
preferentially formed with activated conformers of the kinase; and
second, in progressing from o-, to m-, to
p-PDM, there was a reversal in the relative amounts of


and 

conjugates formed with the activated conformers
(from predominantly 

to predominantly 

). The three
isomers also behaved as affinity cross-linkers, i.e. binding
to PbK prior to cross-linking. Based on relative efficiencies of
cross-linking, two major sets of binding sites for PDM were observed,
with cross-linking at the lower efficacy sites reflecting the extent of
the enzyme activation.
Enzymes and Proteins
60 °C. All experiments described in this study were repeated a
minimum of three times using three different PbK preparations. When
autophosphorylated PbK was required for cross-linking studies, the
phosphorylation was carried out at pH 8.2 in Hepes buffer for 1 min
using the methodology of King et al. (16). The extent of
phosphate incorporation with different kinase preparations ranged from
1.2 to 2.1 mol/
subunit and 0.8-1.0/
subunit. The enzyme was
also phosphorylated by the catalytic subunit of protein kinase A, as
described previously (12), to the extent of 1 mol of phosphate each per
and
subunit. Prior to cross-linking, PbK phosphorylated through
either mechanism was purified by gel filtration over a Sepharose 6B
column (1.5 × 112 cm) developed with Hepes buffer (50 mM, pH 6.8), 0.2 mM EDTA, and 10% sucrose. Fractions that eluted at the position of native holoenzyme were collected, buffer was exchanged, and the enzyme was concentrated to 4.5 mg/ml by ultrafiltration using a Centricon-30 concentrator (Amicon).
Nonphosphorylated enzyme used as the control to determine the effects
of phosphorylation was subjected to the same incubation, gel
filtration, and concentration protocols. Phosphorylase b was isolated from rabbit skeletal muscle (17), and residual AMP was
adsorbed with activated charcoal (Sigma, C-4386). The concentrations of
PbK and phosphorylase b were determined
spectrophotometrically using their respective absorbance indices (18,
19).
,
, and
subunits of phosphorylase kinase were generated in mice against the
holoenzyme as antigen (12, 13). The anti-calmodulin mAb was generated
in mice against a peptide antigen corresponding to residues 107-148 in
the COOH-terminal region of calmodulin (11). Detection conjugates for
immunoblots were from Southern Biotechnology.
) of DTNB, with this and all
related reactions carried out in capped quartz cuvettes. The
TNB
was generated by thiol exchange of DTNB (441 µM) and dithiothreitol (59 µM) in acetone
(21). The release of TNB
was monitored at 412 nm and
reached a plateau after 12 min. Solutions of known TNB
concentrations (
TNB = 14,150 M
1 cm
1 (22)) were then
alkylated at room temperature with limiting amounts of each PDM isomer.
The absorbance of TNB
stopped decreasing after 1 h,
and final measurements were made after 3 h of alkylation. The
concentration of PDM in the reaction was taken to be equal to half the
final decrease in the concentration of TNB
. The
332 values for o-, m-, and
p-PDM determined in this manner were 0.42, 0.59, and 0.66 M
1 cm
1, respectively.
Concentrations of PDM solutions determined spectrophotometrically using
these extinction coefficients agreed well with concentrations based on
triplicate dry weight measurements and the manufacturer's stated
purity for the cross-linkers.



protomer, which is the concentration used in generating Figs. 1, 2, 3, 4, 5;
Hepes, 50 mM, pH 8.2; EDTA, 1.0 mM; and
cross-linker, 17.3 µM, unless otherwise indicated. Prior
to the cross-linking of PbK in the presence or absence of effectors,
the enzyme was incubated for 2 min at 0 °C with the indicated
concentrations of GDP, ADP, heparin, and melittin. Cross-linking was
initiated by the addition of PDM dissolved in dry acetone, with the
final amount of acetone in the cross-linking reactions never exceeding 1% (v/v); in control experiments, this concentration of acetone was
found to have no influence on enzymatic activity. Cross-linking was
quenched by dilution of an aliquot of the reaction mixture into an
equal volume of SDS buffer (0.125 M Tris, pH 6.8, 20% glycerol, 5%
-mercaptoethanol, 4% SDS) followed by brief mixing. After heating at 80 °C for 10 min, the samples (14 µg/lane) were run on SDS-polyacrylamide gradient gels (4-15%) (23) and stained with
Coomassie Blue. All gels were destained in 40% methanol, 10% acetic
acid (2 h) and 7% acetic acid, 4% methanol (15 h). All conclusions
regarding the relative amounts of cross-linked species formed were
based on the integrated optical density of the protein bands determined
using a BioImage whole band analyzer.
Fig. 1.
Time- and concentration-dependent
cross-linking of nonactivated PbK by o-, m-,
and p-PDM followed by SDS-PAGE. Panel A, PbK was
cross-linked with the indicated concentrations of o-PDM (lane 1), m-PDM (lane 2), and
p-PDM (lane 3) for 2 min. Panel B, PbK
was incubated with the isomers of PDM in the stoichiometry (10 PDM:1



) for the times indicated. The reactions were carried out
as described under "Experimental Procedures," with the
cross-linking concentration of PbK being 1.73 µM in both
panels. The position of the putative 
dimer is
indicated by
.
[View Larger Version of this Image (81K GIF file)]
Fig. 2.
Western blots of nonactivated PbK
cross-linked by o- and p-PDM. PbK
(lane 1) was cross-linked with a 10-fold molar excess of
o-PDM (lane 2) or p-PDM (lane
3) for 2 min under the standard conditions, subjected to SDS-PAGE
(4-15% acrylamide), electroblotted onto nitrocellulose, and incubated
with the indicated anti-subunit mAbs, as described under
"Experimental Procedures." A previously characterized
non-cross-linked
-cross-reactive band (
frag (16,
29)), which is a commonly observed degradation product resulting from
storage of the enzyme (18), was observed in the anti-
blot. The
position of the putative 
dimer is indicated in that blot by
.
Lane BMW contains the following broad range biotinylated
molecular weight markers (Bio-Rad) in the indicated order of descending
mass: myosin,
-galactosidase, phosphorylase b, bovine
serum albumin, ovalbumin, carbonic anhydrase, soybean trypsin
inhibitor, lysozyme, and aprotinin.
[View Larger Version of this Image (92K GIF file)]
Fig. 3.
Inhibition by o- and
p-NTS of o- and p-PDM cross-linking
of PbK monitored by SDS-PAGE. Panel A, PbK was cross-linked with o- and p-PDM (17.3 µM)
(lane 1) in the presence of 8.65 µM (lane 2), 17.3 µM (lane 3), 86.5 µM (lane 4), and 173 µM
(lane 5) o-NTS, as described under
"Experimental Procedures." Panel B, PbK was cross-linked
as above (lane 1) in the presence of 86.5, 173, and 865 µM p-NTS (lanes 2-4,
respectively). The percent cross-linking was determined from a
comparison of the total combined optical density for the
,
,
,
and
subunits of cross-linked and non-cross-linked control
(lane 5).
[View Larger Version of this Image (45K GIF file)]
Fig. 4.
Influence of effectors on the cross-linking
of nonactivated PbK by the geometric isomers of PDM monitored by
SDS-PAGE. Panel A, the enzyme was cross-linked with 17.3 µM o-, m-, and p-PDM
(control lanes) in the presence of ADP (0.4 mM),
GDP (0.4 mM), heparin (0.5 mg/ml), or melittin (7.6 µM), as described under "Experimental Procedures."
Panel B, autophosphorylated PbK (lane C, without
cross-linking; 2.1 mol of phosphate/mol of
and 0.9 mol of
phosphate/mol of
) was cross-linked with o-,
m-, and p-PDM as described above.
[View Larger Version of this Image (112K GIF file)]
Fig. 5.
Activity of the cross-linked effector
complexes of PbK after dilution of effectors. PbK was incubated at
pH 8.2 in the presence (solid bars) or absence (open
bars) of m-PDM (17.3 µM) with ADP (0.4 mM), GDP (0.4 mM), heparin (0.5 mg/ml), or
melittin (7.6 µM). The enzyme was then diluted 80-fold in
Hepes buffer, pH 6.8, containing 3.0 mM dithiothreitol as
cross-linking quencher, followed by an additional 10-fold dilution into
the activity assay at pH 6.8. The error bars represent
standard deviations of assays performed in triplicate. This protocol is
described in more detail under "Experimental Procedures."
[View Larger Version of this Image (12K GIF file)]
-galactosidase (116 kDa), phosphorylase b (97.4 kDa), bovine plasma albumin (66 kDa), ovalbumin (45 kDa), and carbonic
anhydrase (29 kDa) (all from Sigma) on 4-15% linear gradient SDS-PAGE. The heaviest independent mass standard was the 
dimer (264 kDa) of PbK prepared by cross-linking the holoenzyme with transglutaminase (8). Subunit composition of the cross-linked species
was determined by Western blotting as described previously using
subunit-specific antibodies (8).
-32P]ATP into
phosphorylase b using phosphocellulose strips (24). Final
concentrations in the assay mixture were: PbK, 0.7 µg/ml; buffer (50 mM Tris, 50 mM
-glycerophosphate, pH 6.8);
phosphorylase b, 6.0 mg/ml; EGTA, 0.1 mM;
CaCl2, 0.2 mM;
-mercaptoethanol, 13 mM; [
-32P]ATP (NEN Life Science Products),
1.5 mM, 0.17 Ci/mol;
Mg(CH3CO2)2, 10 mM; and
sucrose, 2-3%.
Time- and Concentration-dependent Cross-linking of
Nonactivated PbK with the Geometric Isomers of PDM



) or with an excess of the
cross-linkers (10 PDM:1 


) for very short times (0.5 min)
(Fig. 1), the predominant cross-linked conjugate formed was a doublet
with an average mass of 258 kDa, which corresponds to an 
dimer
by mass (masstheor = 264 kDa) and by cross-reactivity with
subunit-specific mAbs (Fig. 2). Two
additional high mass conjugates with apparent molecular masses
corresponding to a 
dimer (masstheor = 250 kDa;
3.0% error) and an 

trimer (masstheor = 308 kDa;
1.7% error) were also observed in trace and minor amounts,
respectively, in Western blots of the cross-linked enzyme (Fig. 2).
Because the mass of the latter fell outside of the range of our mass
standards (29-264 kDa), it was not considered further in this study.



protomer), the only significant product
was the pair of 
dimers (data not shown). Because the reaction of
sulfhydryls with maleimides is approximately 1,000-fold faster than
with amines at pH values below 7.0 (25), cysteine residues on
and
may be the primary nucleophiles for PDM that result in 
formation. The presence of two 
dimers with slightly different
mobilities on SDS-polyacrylamide gels presumably arises either from the
cross-linking of different regions on
and
or from intrasubunit
cross-linking of one or both of the individual subunits (26). Either
possibility indicates more than one region of cross-linking by PDM on
the
and/or
subunits. Similarly, the cross-linking of
subunits to form 
dimers with different migrations has been
observed previously when activated forms of the kinase are treated with
1,5-difluoro-2,4-dinitrobenzene (5), indicating that more than one
region of the
subunit is also subject to chemical modification by
this bifunctional aryl reagent.
and
subunits lost formed 
dimers when the nonactivated holoenzyme was treated with the three PDM isomers under those conditions (low concentrations of cross-linkers or short incubation times). Not only was 
formation relatively specific, it was also
an efficient process, given that 15% of the
and
subunits were
cross-linked during a short period of cross-linking (2 min) at the low
ratio of 1 PDM:2


(Fig. 1A). This high yield of cross-linking under these conditions indicates minimal competition from
monosubstitution reactions or hydrolysis of the active maleimide, a
significant reaction at pH 8.2 (27), our standard pH of cross-linking. The specificity, rapidity, and extent of cross-linking are consistent with the presence of binding sites for PDM on the
and/or
subunits, which have significant sequence similarity (28).


(masstheor = 228 kDa;
1.3% error) and 

trimers (masstheor = 215 kDa;
4.7% error), respectively (Fig.
1). The subunit composition of these new heteromers was verified
further by cross-reactivity with subunit-specific mAbs (Fig. 2). As was the case with the 
dimer, the 

trimer was also present
as a doublet. In contrast, however, to the 
dimer, the rate of formation of the trimers, especially of 

, varied with the
cross-linker used: the p-isomer caused the greatest
formation of 

, although the amount of it formed using this
isomer and nonactivated enzyme was still less than that of 

(Fig. 1). Also, the extent of 

and 

formation
increased over a 10-min period at excess PDM concentrations (10 PDM:1



) (Fig. 1B), whereas the amount of discrete

dimer reached a maximum within 0.5 min and then slowly decreased
upon further cross-linking. Because only 
dimers are observed
when the enzyme is cross-linked below pH 7.5 (data not shown), the
formation at higher pH values of 

and 

trimers presumably results either from the cross-linking of different types of
side chains or from a conformational change induced by alkaline pH,
which is known to stimulate the activity of phosphorylase kinase
greatly and to induce a conformational change (13).

dimer
(masstheor = 155 kDa, 0.6% error) was observed under
conditions identical to those under which 

and 

trimers formed (Fig. 1). As was observed for 

, the rate of
formation of this putative 
dimer increased in order of
cross-linking by o-, m-, and p-PDM. In
blots of enzyme cross-linked by either o- or
p-PDM, the conjugate interacted with the anti-
mAb but not with the anti-calmodulin mAb (the
subunit is endogenous calmodulin) (Fig. 2,
). Although the anti-calmodulin mAb, which targets the COOH-terminal region of calmodulin (11), has been used
successfully with other cross-linkers of PbK to detect trace amounts of
calmodulin-containing conjugates (29), it is possible that the
calmodulin epitope in this particular conjugate is masked as a result
of the cross-linking by PDM.
,
,
, and
subunits that were
protected from cross-linking, a 10-fold excess of o-NTS (the more potent inhibitor) over PDM inhibited cross-linking by
o- and p-PDM (10 PDM:1 


) by 95 and
91%, respectively; under identical conditions p-NTS
inhibited cross-linking by the respective PDM isomers by 86 and 87%.
The potent inhibition of o- and p-PDM
cross-linking by their nonreactive succinimide structural analogs
indicates the presence of binding sites on PbK for the PDM isomers.
Furthermore, the nearly identical inhibition of both PDM cross-linkers
by either monosuccinimide isomer suggests that these four compounds
bind to a common site or sites.


, especially by m- and p-PDM, and a
small increase in 

(Fig.
4A). Likewise, activation by autophosphorylation also caused a large increase in the formation of


and a small increase in 

(Fig. 4B);
activation via phosphorylation by the catalytic subunit of protein
kinase A caused similar effects (data not shown). The isomer
selectivity for trimer formation with these activated conformers of PbK
induced by either nucleoside diphosphates or phosphorylation changed
from predominantly 

with o-PDM, to approximately
equivalent amounts of 

and 

with m-PDM, to
predominantly 

with p-PDM. Thus, the relative selectivity for increased 

formation in progressing from
o- to p-PDM is the same as was described
previously for the nonactivated enzyme (Fig. 1); of course, it is
possible that the basal formation of these trimers with the
nonactivated enzyme may simply reflect the fact that cross-linking is
carried out at the stimulatory pH of 8.2. Unlike the very large
increase in 

and the small increase in 

, there were
only modest increases in the 
and putative 
dimers upon
activation.


and 

conjugates induced by nucleoside diphosphates and by phosphorylation, only trace amounts of these trimers were formed when the enzyme was
cross-linked in the presence of the activator heparin. Instead, heparin
protected the
subunit while promoting extensive cross-linking of
the
subunit (Fig. 4A). These results suggest that
heparin, which also promotes dissociation of the
subunit (30),
activates the enzyme through a different mechanism than ADP, GDP, or
phosphorylation.


or 

(Fig. 4A), which is consistent with the notion that formation of these trimers is
characteristic of activated conformations or at least those
activated conformations induced by nucleoside diphosphates or
phosphorylation.


and 

trimers, we were curious if the cross-linked activated
enzyme would remain activated when subsequently assayed under
nonactivating conditions, i.e. whether cross-linking could
lock it in the activated conformation. Because m-PDM formed
approximately equal amounts of 

and 

, it was the
isomer chosen for these experiments. Cross-linking with
m-PDM at the stimulatory pH of 8.2, but in the absence of any specific allosteric activators, caused a 2.5-fold activation in
subsequent assays at the control pH of 6.8 (Fig.
5); this activation was not observed when
the cross-linking was performed at pH 6.8, which resulted in 
dimers being the only significant conjugate formed (data not shown).
When the allosteric activator ADP was included during cross-linking at
pH 8.2, the activation in subsequent assays was increased an additional
60% to 4-fold over control. The additional activation was not the
result of carryover ADP in the activity assay because the dilution step
between cross-linking and assay was sufficient to dilute the activator
to well below its Ka value, as shown by the lack of
activation by ADP in the non-cross-linked control (Fig. 5).
Cross-linking in the presence of GDP, the other known purine nucleoside
diphosphate activator, caused an activation of 3.25-fold. When both the
cross-linking and activity assays were performed at pH 8.2, this
irreversible activation was not detected, even when effectors were
included in the cross-linking reaction; in fact, cross-linking resulted in a slight inhibition of the activity measured at this pH value (data
not shown).

, 

, and 

), plus smaller amounts of a probable 
complex. With all forms of the enzyme tested, there was an increased formation of 

in going from o-, to
m-, to p-PDM, which not only changes the geometry
of cross-linking, but also increases the cross-linking span from 4.8 Å to 12 Å (14). The rate, efficiency, and concentration dependence of
cross-linking suggested the possible presence of binding sites for PDM
on PbK, which was confirmed through the inhibition of cross-linking by the chemically inactive structural analogs o- and
p-NTS. These results identify PbK as one of numerous
proteins that bind and subsequently undergo modification by reactive
phenyl derivatives that would not generally be considered as affinity
labels (for discussion, see Ref. 33). Given that the cross-linking of
PbK by both o- and p-PDM was inhibited to the
same extent by either o- or p-NTS, it is probable
that the isomers of PDM bind to the same site or sites. In a recent
study that compared the binding of benzene, o-xylene, and
p-xylene within a buried nonpolar cavity of T4 lysozyme, it
was shown that the same site accommodated each xylene isomer through
different ligand binding interactions: the o- and
p-substituted isomers were bound in orientations resulting from rotation and translation of the ring with respect to its orientation in bound benzene (34). Similarly, the differential formation of 

and 

could possibly be caused by
different orientations of each PDM isomer within a given site as
opposed to simply the different cross-linking spans of the isomers.

forms much more readily
than 

and even though higher concentrations of NTS are
required to inhibit the formation of 
than of 

, one
cannot say with certainty that PDM binds with higher affinity to the
site(s) involved in formation of 
than to those involved in


trimer formation because at any given site low affinity could
be offset by high reactivity. In analyzing the number and location of
PDM/NTS binding sites, one must also take into account the high
sequence homology of the
and
subunits (28). Based on the
formation of 
, which is inhibited by NTS, there is clearly at
least one binding site for PDM/NTS on the
or
subunit. In addition, there must also be one other class of binding site on the
holoenzyme, because neither 
nor 
accumulates as an
intermediate of the 

trimer when cross-linking is carried out
in the presence of NTS, i.e. both cross-linking events
necessary for trimer formation are inhibited by NTS, demonstrating the
presence of at least two distinct binding sites in the trimer. The
second site could be on either the
or
subunit, and the trimer
could theoretically be formed either as
-
-
or as
-
-
.
The latter configuration seems unlikely because neither
2 nor higher order oligomers of
have been observed
after cross-linking of the PbK holoenzyme with a variety of
cross-linkers spanning from 0 to 17 Å (5, 8-10); nevertheless, it
cannot be completely ruled out, especially since there is indirect
evidence suggesting that
subunit from rat soleus exists as an
oligomer when expressed by itself (35). Although for the sake of
simplicity only the 

trimer was considered in the above
discussion, each consideration also applies equally to the 

trimer. Moreover, the
and
subunits, being homologs, could
contain similar binding sites for PDM.


(especially with p-PDM) and a small increase in 

. Thus, activation
of PbK is associated with changes in quaternary structure involving the
,
, and
subunits and/or with the unmasking of nucleophilic residue(s) on at least one of these subunits. Regardless, however, of
the exact mechanism through which activation by nucleoside diphosphates
and phosphorylation occurs, cross-linking with PDM provides direct
structural evidence for alterations in the interactions of the
catalytic
subunit with the regulatory
and
subunits upon
activation. The structural changes resulting in increased formation of


and 

trimers caused by the above well characterized activators of the kinase were not observed with the polyanionic activator heparin, which has previously been shown to have different structural effects on PbK than other activators (32), including causing
dissociation of the
subunit (30). Melittin, an inhibitor of PbK
(31), likewise did not cause increased formation of 

and


trimers.


, and to a lesser
extent 

, are apparent indicators of the activated
conformer(s), in that both trimers are preferentially formed with
activated kinase. The extent of formation of the 
dimer was
essentially the same with both activated and nonactivated forms of the
kinase; moreover, when cross-linking was performed at a low pH so that
the only conjugate formed to a significant extent was the 
dimer,
no activation was observed in subsequent assays. Similarly, zero length
cross-linking with transglutaminase, which resulted in 
dimers as
the predominant conjugate, did not give rise to activation (8). Based
on the time- and concentration-dependent cross-linking of
PbK by PDM under different conditions, there are two major sets of PDM
binding sites on the PbK holoenzyme: high efficacy site(s) involving
the formation of 
, which is generated in greater amounts than the
remaining conjugates with all forms of the enzyme tested, and low
efficacy site(s) involving 

and 

formation. It is the
cross-linking between the catalytic
subunits and the inhibitory
and
subunits (39-41) at the low efficacy site(s) that reflects the
activation state of the kinase.
*
This work was supported by National Institutes of Health
Grant DK32953 (to G. M. C.) and by a postdoctoral fellowship from the
Tennessee Affiliate of the American Heart Association (to O. W. N.).The costs of publication of this
article were defrayed in part by the
payment of page charges. The article
must therefore be hereby marked
"advertisement" in
accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
¶
To whom correspondence should be addressed: Division of
Molecular Biology and Biochemistry, School of Biological Sciences, University of Missouri, 503 Biological Sciences Bldg., 5100 Rockhill Rd., Kansas City, MO 64110-2499; Tel.: 816-235-2235; Fax:
816-235-5595.
1
The abbreviations used are: PbK, phosphorylase
b kinase; PDM, phenylenedimaleimide; mAb, monoclonal
antibody; TNB
, free thiol of DTNB; DTNB,
5,5
-dithiobis(2-nitrobenzoic acid); PAGE, polyacrylamide gel
electrophoresis; NTS, N-(o- or
p-tolyl)succinimide.
©1997 by The American Society for Biochemistry and Molecular Biology, Inc.
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