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Volume 272, Number 45, Issue of November 7, 1997
pp. 28342-28348
(Received for publication, March 11, 1997, and in revised form, August 11, 1997)
From the Department of Cellular and Molecular Physiology, The
Milton S. Hershey Medical Center, Pennsylvania State University
College of Medicine, Hershey, Pennsylvania 17033
S-Adenosylmethionine decarboxylase
(AdoMetDC) is a pyruvoyl enzyme, and the pyruvate is formed in an
intramolecular reaction that cleaves a proenzyme precursor and converts
a serine residue into pyruvate. The wild type potato AdoMetDC proenzyme
processed much faster than the human proenzyme and did not require
putrescine for an optimal rate of processing despite the presence of
three acidic residues (equivalent to Glu11,
Glu178, and Glu256) that were demonstrated in
previous studies to be required for the putrescine activation of human
AdoMetDC proenzyme processing (Stanley, B. A., Shantz, L. M.,
and Pegg, A. E. (1994) J. Biol. Chem. 269, 7901-7907). A fourth residue that is also needed for the putrescine
stimulation of human AdoMetDC proenzyme processing was identified in
the present studies, and this residue (Asp174) is not
present in the potato sequence. The site of potato AdoMetDC proenzyme
processing was found to be Ser73 in the conserved sequence,
YVLSESS, which is the equivalent of Ser68 in
the human sequence. Replacement of the serine precursor with threonine
or cysteine by site-directed mutagenesis in either the potato or the
human AdoMetDC proenzyme did not prevent processing but caused a
significant reduction in the rate. Although the COOH-terminal regions
of the known eukaryotic AdoMetDCs are not conserved, only relatively
small truncations of 8 residues from the human protein and 25 residues
from the potato proenzyme were compatible with processing. The
maximally truncated proteins show no similarity in COOH-terminal amino
acid sequence but each contained 46 amino acid residues after the last
conserved sequence, suggesting that the length of this section of the
protein is essential for maintaining the proenzyme conformation needed
for autocatalytic processing.
AdoMetDC1 is an
essential enzyme for the biosynthesis of polyamines and is one of a
small class of decarboxylases that uses a covalently bound pyruvate as
a prosthetic group (1, 2). These pyruvoyl-dependent
decarboxylases form amines such as histamine, decarboxylated
S-adenosylmethionine, phosphatidylethanolamine (a component
of membrane phospholipids), and
[View Larger Version of this Image (16K GIF file)]
Studies in which the yeast and the human AdoMetDC (hAdoMetDC)
proenzymes were expressed have shown that the site of cleavage was
contained in the sequence YVLSESS, with the underlined
serine residue forming the pyruvate (8, 9). Apart from the obvious presence of a serine residue, this sequence has little or no
resemblance to the cleavage sites in the proenzymes of histidine
decarboxylase, phosphatidylserine decarboxylase, and aspartate
decarboxylase (1, 2).
Processing and activity of the mammalian and yeast AdoMetDCs is
enhanced by the presence of putrescine (12-14). This provides an
important physiological mechanism favoring the conversion of putrescine
into the higher polyamines, since it links the level of putrescine to
the amount of active AdoMetDC that is needed for the conversion
of putrescine into spermidine. Site-directed mutagenesis studies of the
hAdoMetDC proenzyme have indicated that the interaction of
putrescine with at least three acidic acid residues (Glu11,
Glu178, and Glu256) is necessary for the
acceleration of processing, since conversion of any of these residues
to glutamine abolishes the effect (15, 16).
Numerous cDNA sequences for eukaryotic AdoMetDC proenzymes have now
been obtained, and at least 23 such sequences can be compared. These
include five mammalian (human (17), mouse (18), rat (19), hamster (20),
and cow (21)), amphibian (Xenopus laevis) (22), yeast (9),
two protozoan parasites (Trypanosoma brucei (GenBankTM U20092) and Leishmania donovani
(GenBankTM U20091)), the parasitic worm Onchocerca
volvulus, (23), and at least 13 plants including both
monocotyledons such as wheat (24), maize (GenBankTM
Y07767), and rice (GenBankTM Y07766) and dicotyledons such
as potato (25, 26), tomato (GenBankTM Y07768), periwinkle
(27), cabbage (GenBankTM X95729), arabidopsis
(GenBankTM U63633), morning glory (GenBankTM
U64927), and carnation (28). The derived amino acid sequences from
these cDNAs show that there are some very highly conserved regions
that include the sequence for proenzyme cleavage and the sequence
(KTCTG) containing an essential cysteine residue that has been shown to
be part of the active site of hAdoMetDC (15).
All of the acidic residues known to be involved in putrescine
activation of the processing and activity of the hAdoMetDC (15, 16) are
present in the cDNA-derived plant sequences, but there is no
obvious similarity to the Mg2+-activated Escherichia
coli AdoMetDC (14, 29, 30). However, plant AdoMetDC activities
have been reported not to be activated by putrescine (31-34), and the
question of the possible activation of the proenzyme processing by
putrescine has not been addressed. A comparison of the amino acid
sequences of the hAdoMetDC and the potato AdoMetDC (pAdoMetDC) is shown
in Fig. 2. We present evidence showing
that neither the activity nor the proenzyme processing rate of the
pAdoMetDC are stimulated by putrescine or by Mg2+.
[View Larger Version of this Image (66K GIF file)]
Studies of the processing of AdoMetDC have been hampered by the speed
and apparently autocatalytic nature of the reaction. This has rendered
it difficult to study the processing reaction, since significant
processing occurs during the period of synthesis of the proenzyme
needed to accumulate sufficient protein for analysis. In the present
studies, we have investigated the effect of replacing the
pyruvate-generating serine with two other amino acids, cysteine and
threonine, which could also form a peptide ester. Studies were carried
out with both the hAdoMetDC and the pAdoMetDC proenzymes. The
importance of the COOH-terminal region of the molecule has also been
studied, since the largest region of differences in the known AdoMetDC
sequences occurs at the carboxyl end of the molecule, where there is no
clear similarity after the sequence FXPXXF
located at human residues 275-280 (Fig. 2). The potato and all of the
other known plant AdoMetDC sequences have a highly charged extension at
the carboxyl terminus.
Potato AdoMetDC cDNA contained in a
pBluescript KS vector (pTUB13) (25) was generously provided by Dr.
M. A. Taylor, Scottish Crop Research Institute, Invergowrie,
Dundee, Scotland. The T7-coupled Transcription and Translation kit
(TNT) and RNasin were purchased from Promega.
[35S]Methionine was from NEN Life Science Products, and
[14COOH]AdoMet was from Amersham Life Science, Inc. The
Chameleon double-stranded site-directed mutagenesis kit were purchased
from Stratagene. Unlabeled AdoMet was from Sigma. The restriction
enzymes used were from Life Technologies, Inc., Promega, and New
England Biolabs Inc. Vent polymerase was from New England Biolabs. DNA sequencing was carried out using Sequenase Version 2.0 (Amersham) and
by an ABI 377 automated sequencer (Applied Biosystems Inc.) in the
macromolecular core facility of Hershey Medical Center. The pQE31
plasmid was obtained from Qiagen Inc. (Chatsworth, CA), and the
TalonTM metal affinity resin was purchased from
CLONTECH.
Mutant cDNAs were constructed using pTUB13 (26) for the
potato (which contains the cDNA in a pBluescript KS vector) and pCM9 (which contains the human cDNA in the pGEM3Zf The COOH-terminal deletion mutants were produced by changing the codons
indicated to UGA, which was followed by an XhoI site (for
potato) or an XbaI site (for human) using PCR carried out with an antisense mutation primer that produced these changes and a
sense primer to the T7 promoter region located upstream of the AdoMetDC
coding regions. The PCR products then were cut with AflII
and XbaI (for mutations in pCM9) or with BamHI
and XhoI (for mutations in pTUB13), and the fragments were
ligated into vector pieces derived from the template plasmids that had been cut with the same restriction enzymes. For the double mutations (A326X/K327Stop for human and T335X/R336Stop for
potato where X = A, S, K, or E), a similar procedure
was used, except that in the antisense primer the codon preceding the
UGA was changed to produce the protein containing the desired amino
acid.
The Chameleon mutagenesis kit (Stratagene) was utilized for
site-directed point mutations according to the manufacturer's instructions. For mutations in the pCM9 plasmid, a selection primer that destroyed a unique NdeI site was used, and for the
pTUB13, a selection primer that converted the unique KpnI
site to an SrfI site was used.
The complete coding sequence of all of the mutated AdoMetDC cDNA
sequences was checked to confirm that the desired mutation was present
and that no other mutations had occurred.
The TNT
assay system (Promega) with T7 RNA polymerase was used for the coupled
transcription and translation from the control and mutant pCM9 and
pTUB13 plasmids. Reactions were carried out according to the
manufacturer's specifications with some modifications, as indicated
below. A typical 12.5-µl reaction assay mix contained 0.2 µg of
plasmid DNA, 10 units of RNasin, 1 unit of T7 RNA polymerase, 10 pmol
of [35S]methionine (1 Ci/nmol), 20 µM of
the other 19 amino acids, and 6.25 µl of rabbit reticulocyte lysate
(nuclease-treated). The tubes were incubated at 30 °C for 30 min,
and translation was stopped by adding cycloheximide to a final
concentration of 200 µM. Aliquots (5 µl) were removed
at this time and at various time points after continued incubation at
30 °C in order to measure the processing. The protein products in
these aliquots were separated by SDS-PAGE using 12.5% gels. The gels
were dried, and the radioactivity of the bands corresponding to
proenzyme and mature enzyme were directly measured with a
PhosphorImager 425E-120 (Molecular Dynamics, Inc.). In some
experiments, 1 mM putrescine was included in the processing
reaction mixes. The rates of processing were calculated as described
previously (7).
For the AdoMetDC activity assays,
47 µM of unlabeled methionine was added to the TNT
reactions in place of the [35S]methionine. A 5-µl
aliquot of the reaction mix was then assayed for AdoMetDC activity by
measuring the ability to convert [14COOH]AdoMet into
14CO2 in a 30-min incubation at 37 °C (35).
The assay mix consisted of 1.25 mM dithiothreitol, 50 mM sodium phosphate buffer, pH 6.8, and 9.6 µM [14COOH]AdoMet (52 mCi/mmol). In some
experiments, putrescine was added to a final concentration of 1.9 mM as indicated to stimulate AdoMetDC activity. Specific
activity was calculated as the cpm of 14CO2
produced per 30 min divided by the band intensity corresponding to the
31- or 32-kDa processed AdoMetDC The potato AdoMetDC
cDNA was inserted into the pQE31 expression vector. This
construction replaced the first three residues of the amino terminus of
the pAdoMetDC sequence (MEM) with the sequence MRGS(H)6TDP
and allows the protein to be purified by immobilized metal affinity
chromatography. Insertion was carried out by using PCR with pTUB13 as a
template and the primers 5 The pyruvate prosthetic group
was converted to alanine by reductive amination by incubation at
37 °C in 2 M ammonium acetate, pH 6.5, and 100 mM NaCNBH3 (8, 9, 36), and the protein subunits
were resolved by SDS-polyacrylamide gel electrophoresis. The protein
bands were transferred to polyvinylidene difluoride membranes
(Millipore), and the 32-kDa band was subjected to amino acid sequencing
using an Applied Biosystems 477A protein sequencer.
Previous studies have shown that
the 38-kDa hAdoMetDC proenzyme is processed in reticulocyte lysates and
that putrescine stimulates this reaction. The data for hAdoMetDC shown
in Fig. 3a are in agreement
with this. After a synthesis period of 30 min in a typical TNT reaction
in the presence of putrescine, 35% of hAdoMetDC was in the processed
31-kDa form. After 60 min of further incubation plus putrescine,
virtually all of the proenzyme was processed. When synthesis and
further reaction were carried out in the absence of putrescine, the
mature enzyme constituted only about 15% of the total enzyme after a
30-min synthesis and only about 70% at the end of an additional
120-min incubation. In contrast, the pAdoMetDC proenzyme was processed
so rapidly in the reticulocyte lysate system that only the processed
band of 32 kDa could be detected at the end of the synthesis period
(Fig. 3a). The expected proenzyme band of 40 kDa from the
pAdoMetDC could only be detected using a shorter synthesis time and,
even then, only a very weak band corresponding to the proenzyme was
seen; this disappeared after 2 min of processing. The presence of
putrescine did not appear to stimulate this reaction (data not shown),
but since the processing is so fast, no definitive conclusion could be
drawn.
[View Larger Version of this Image (36K GIF file)]
The cleavage site of the
hAdoMetDC is known to be between residues Glu67 and
Ser68, with Ser68 forming the pyruvate
prosthetic group at the NH2 terminus of the
[View Larger Version of this Image (25K GIF file)]
From sequence comparisons (Fig. 2), the equivalent residue to the human
Ser68 in the potato sequence appears to be
Ser73. Mutating this residue to threonine or cysteine led
to a much slower cleavage of the pAdoMetDC, whereas mutating the
adjacent serine residue to cysteine (S74C) had no effect on the
cleavage (Fig. 4b and 4c). As with the hAdoMetDC
mutants, the pAdoMetDC containing cysteine at position 73 was cleaved
more slowly than the mutant containing threonine.
These results provide suggestive but indirect evidence that
Ser73 is the source of the pyruvate in pAdoMetDC. To
confirm that this is the case, the pAdoMetDC protein was expressed in
E. coli and purified to homogeneity. The purified protein
was treated by reductive amination using ammonium ions and
NaCNBH3 to convert the amino-terminal pyruvate into alanine
and allow sequencing by Edman degradation. The reduced protein was
separated by SDS-polyacrylamide gel electrophoresis, and the 32-kDa
subunit was sequenced using a gas phase sequencer. The sequence
obtained was Ala-Ser-Leu-Phe-Val-Tyr-Ser-Tyr-Lys, which agrees
completely with the sequence predicted from the proenzyme cDNA
(Fig. 2) of residues 73-81 with the Ser73 replaced by Ala.
Interestingly, the same sequence (but in lower yield) was obtained even
when the purified pAdoMetDC was not treated to convert the pyruvate.
The most likely explanation for this finding is that a portion of the
recombinant pAdoMetDC has been inactivated by transamination during
expression in E. coli. Although the explanation for this
phenomenon is not known, a similar observation has been made when
either the yeast or the E. coli AdoMetDC were overproduced
to high levels in E. coli (9).
Replacement of the serine precursor of the pyruvate prosthetic group
with threonine generates an Table I.
Effect of mutation of the serine residue that serves as the precursor
of pyruvate on activity of human and pAdoMetDC
Processing of Mammalian and Plant
S-Adenosylmethionine Decarboxylase Proenzymes*

-alanine (a precursor of coenzyme
A), which are all of critical importance in cellular physiology and
provide an important target for drug design. The mechanism of formation
of the prosthetic group has been studied extensively using histidine
decarboxylase from Lactobacillus (1, 3-6), and more
preliminary studies with other decarboxylases including AdoMetDC (7-9)
suggest that the mechanism is similar (Fig.
1). In all cases, the enzyme is
synthesized as a proenzyme that then undergoes an intramolecular
cleavage reaction forming the two subunits and generating the pyruvate
at the amino terminus of the
subunit from a serine precursor
residue. Cleavage takes place via the formation of an intermediate
ester resulting from a nucleophilic attack of this serine residue at
the amide carbonyl group of the preceding amino acid. This is followed
by
-elimination to form the
subunit and the
subunit
containing a dehydroalanine at its amino terminus. The dehydroalanine
then loses ammonia and is converted to pyruvate via the formation of
imine and carbinolamine intermediates (1-3). The initial rearrangement
step of this reaction to form a peptide ester linked to the hydroxyl
side chain of serine is identical to that involved in protein splicing
reactions (10, 11). Further information on such cleavage reactions
would be very useful in understanding this reaction in more detail and in producing useful drugs based on prevention of protein
maturation.
Fig. 1.
Formation of pyruvate from an internal serine
residue.
Fig. 2.
Comparison of human and potato AdoMetDC
sequences. The residues that are fully conserved or subject to
only highly conservative replacements in all known eukaryote AdoMetDCs
are shown in bold. The site of formation of pyruvate is
double underlined. The glutamic acid residues and the
aspartic acid needed for stimulation of processing of the hAdoMetDC by
putrescine are shown underlined or by an
asterisk, respectively. The position at which the proteins can be truncated without losing the ability to be processed is indicated with an arrow.
Materials
vector (8)) for the hAdoMetDC.
subunit from a parallel synthesis
with [35S]methionine.
-TCATAATGGATCCGGATTGCCAGTTTCTGCC-3
and
5
-AATTAACCCTCACTAAAGGG-3
to generate a 1.4-kilobase fragment that was
cut with BamHI and KpnI and inserted into pQE31
cut with the same enzymes, giving plasmid pHIS-PSAM. XL-1 Blue cells
were transformed with pHIS-PSAM and grown to a density corresponding to
A600 of 0.6. Expression of AdoMetDC was then
induced by the addition of
isopropyl-1-thio-
-D-galactopyranoside to a final concentration of 0.3 mM, and after 3 h the cells were
harvested and washed once with buffer X (10 mM Tris-HCl, pH
8.0, 200 mM NaCl, 0.1 mM phenylmethylsulfonyl
fluoride) at 4 °C. The cell pellet was then resuspended in buffer X
and homogenized with a French press. The suspension was centrifuged at
20,000 × g for 30 min, and the supernatant was applied
to a 1-ml column of TalonTM resin pre-equilibrated with
buffer X. The column was washed with buffer X containing 10 mM imidazole, and the protein was eluted with buffer X
containing 200 mM imidazole. The eluted protein was
immediately passed through a Sepahadex G-25 column pre-equilibrated with 10 mM Tris-HCl, pH 8.0, 50 mM NaCl, 2.5 mM EDTA, and 0.1 mM phenylmethylsulfonyl
fluoride to remove the imidazole, and the protein was stored at
80 °C. The S73C mutant pAdoMetDC protein was prepared in the same
way using the pTUB13 containing the S73C mutation for the PCR
template.
The Processing of AdoMetDC
Fig. 3.
The processing of human and potato
AdoMetDC. The proenzyme proteins were synthesized as described
under "Experimental Procedures" for 15 min (panel b) or
30 min (panel a). After the addition of cycloheximide to 200 nM, incubation was continued, and 5-µl aliquots were
removed at the time shown and separated on 12.5% SDS-polyacrylamide
gel electrophoresis. Panel a shows the processing curves of
hAdoMetDC and pAdoMetDC in the absence of putrescine and the hAdoMetDC
in the presence of 1.0 mM putrescine. Panel b
shows the gel of the processing of pAdoMetDC after a 15-min synthesis
period with samples removed at 2-min intervals. Results are shown for
the wild type (WT) pAdoMetDC and for the truncated mutant
Y339Stop.
subunit.
This serine residue was converted to alanine, threonine, or cysteine by
site-directed mutagenesis. As previously reported (8), the S68A mutant
proenzyme gave no detectable 31-kDa subunit, but both the S68C and S68T
mutants did process, although much more slowly than the wild type (Fig.
4a). The half-time for
processing of the proenzyme of the S68T mutant was about 5 h,
whereas that of the S68C mutant was >12 h.
Fig. 4.
The processing of mutants at the cleavage
site of human and pAdoMetDC. Processing was measured as described
in Fig. 3. Panel a shows the time course of processing in
the presence of 1.0 mM putrescine after a 30-min synthesis
reaction for the hAdoMetDC and its mutants in which the
Ser68 residue was changed to threonine, cysteine, or
alanine as shown. Panel b shows results for the pAdoMetDC in
which residues Ser73 and Ser74 were changed to
cysteine or Ser73 was changed to threonine as shown. Samples
were taken at the end of the 30-min synthesis reaction. Panel
c shows the effect of putrescine on the processing of S73C and
S73T pAdoMetDC mutants. Processing was measured after a 30-min synthesis period in the presence or absence of putrescine
(Put.) as shown. Aliquots of the synthesis reaction for the
S73C mutant were also precipitated with 2 M
(NH4)2SO4 (A.S.), at
4 °C, redissolved and desalted, and then incubated in the presence
or absence of reticulocyte lysate as indicated. W.T., wild
type.
-ketobutyrate (1, 4). Although such
mutants of histidine decarboxylase or phosphatidylserine decarboxylase
have been shown to be active (4, 37), neither the human S68T nor the
potato S73T AdoMetDCs had any detectable activity (Table
I). Replacement of the serine precursor
with cysteine has no effect on the prosthetic group formed on cleavage, which is still pyruvate but produces a thiocarboxylate group at the
carboxyl terminus of the
chain in the mutant (1, 4). Within the
limits of experimental error, the plant S73C mutant appeared to be
fully active (Table I). The human S68C AdoMetDC was also active, but
the specific activity was considerably less than that of wild type
(Table I). The correct processing/cleavage of the pAdoMetDC S73C mutant
was confirmed by expressing the protein in E. coli and
sequencing the large subunit after reductive amination as described
above.
subunit from a synthesis reaction with [35S]methionine run in
parallel. Assays of enzymatic activity were carried out using a 30-min
incubation at 37 °C with [14COOH]AdoMet in the presence of
1.0 mM putrescine for hAdoMetDC and without putrescine for
pAdoMetDC. The limit of detection of the AdoMetDC activity measurement
was determined by assuming that twice the background cpm released in
the assay was the minimum amount that unequivocally indicated activity.
This limit is lower for the human AdoMetDC because this is more active
than the pAdoMetDC. The limit of detection for the processing reaction
was 0.3%/h.
AdoMetDC used
Specific
activity
Processing
% control
% proenzyme
cleaved in 1 h
Wild type human
100
>95
S68T
<0.2
12
S68C
7
4
S68A
<0.2
<0.3
Wild type potato
100
>95
S73T
<1
10
S73C
90
4
S74C
98
>95
Putrescine had absolutely no stimulatory effect on the slower rate of processing of the potato S73C or S73T mutants (Fig. 4c). This is not due to the presence of sufficient putrescine in the rabbit reticulocyte lysate used in the TNT reactions to stimulate the processing of pAdoMetDC. The concentration of putrescine was investigated by high performance liquid chromatography and found to be <1 nM. Furthermore, treatment of the samples with 2 M (NH4)2SO4 at 4 °C to precipitate the AdoMetDC proenzyme protein and remove putrescine did not slow the rate of processing and re-addition of untreated lysate did not stimulate it (Fig. 4c). The addition of Mg2+ also did not influence the processing of the pAdoMetDC proenzyme (results not shown). Activity assays with the wild type and S74C mutant pAdoMetDC also indicated that the activity of pAdoMetDC was not affected by putrescine or by Mg2+ at concentrations of up to 8 mM (data not shown).
Three acidic residues have been found to be essential for the
stimulation of the processing of mammalian AdoMetDC proenzyme by
putrescine, suggesting that interactions between the cationic putrescine and the protein change its configuration to favor processing (7, 15, 16). A simple model for this interaction would involve two
putrescine molecules, each forming a bridge between two acidic sites,
and would suggest that a fourth site also exists. Previous studies have
eliminated all of the other conserved glutamic acid residues (15, 16),
but comparisons of the amino acid sequences of the putrescine-activated
AdoMetDCs revealed two conserved aspartic acid residues that were
possible candidates for a fourth site. These two residues,
Asp174 and Asp266, were therefore mutated
separately in the hAdoMetDC to Asn, and the effect of putrescine on the
processing and activity was studied. As shown in Fig.
5, the processing of the D174N mutant
proenzyme was not stimulated by putrescine, whereas the processing of
the D266N proenzyme was the same as wild type AdoMetDC. Therefore, Asp174 appears to be the fourth site of interaction of
putrescine with the human AdoMetDC. An acidic residue at this site is
absent from the pAdoMetDC (Fig. 2) and from all other plant AdoMetDC
sequences.
[View Larger Version of this Image (24K GIF file)]
The enzymatic activity of the processed D174N mutant hAdoMetDC was not stimulated by putrescine (Table II). Although the activity was slightly reduced compared with that of the wild type or the D266N mutant, most of this reduction was due to the lack of putrescine stimulation.
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The hAdoMetDC and the pAdoMetDC differ most
significantly at the COOH terminus, where there is little similarity
after human residue Phe280 (equivalent to potato residue
Phe289), and the potato protein contains a very acidic
17-amino acid extension that is not present in the human. These
differences raised the possibilities that (a) part of the
carboxyl domain may not be necessary for activity or processing and
(b) that the COOH-terminal region of the pAdoMetDC is
responsible for the very rapid processing of this proenzyme. To
determine the minimum size of the AdoMetDC proenzyme compatible with
processing, a series of deletion mutations were made in both enzymes
(Fig. 6).
[View Larger Version of this Image (47K GIF file)]
Removal of eight residues from the COOH-terminal of hAdoMetDC proenzyme had no effect on processing in the presence of putrescine and only a slight effect on processing in the absence of putrescine. Removal of one more residue (mutant A326Stop) greatly reduced the rate of processing, and any additional truncations (mutants F325Stop, S324Stop, V321Stop, and C310Stop) reduced processing to undetectable levels (>98% reduction) (Fig. 6, a and b). These results indicate that the minimal size for normal processing of the hAdoMetDC is 326 amino acids, with the protein extending for 46 residues beyond the Phe280 residue. Similarly, truncations of the pAdoMetDC proenzyme that still included Thr335 (which is 46 residues beyond Phe289) still processed at wild type rates, but truncations to 334 or fewer residues produced essentially complete inhibition of processing (Fig. 6c).
Although their removal prevented proenzyme processing, the nature of the COOH-terminal residues in the smallest processable truncated proenzymes (K327Stop, human; R336Stop, potato) seemed to make little difference to the processing rate. Thus, both potato COOH-terminal mutants T335A/R336Stop, T335S/R336Stop, T335K/R336Stop, and T335E/R336Stop (Fig. 6c) and, in the presence of putrescine, human COOH-terminal mutants A326G/K327Stop, A326K/K327Stop, and A326E/K327Stop (results not shown) still processed at the same rate as their respective wild type proenzymes. However, when assayed in the absence of putrescine, the human K327Stop mutant processed somewhat slower than longer proenzymes, and whereas the double mutation of A326G/K327Stop did not slow down the processing rate further, A326K/K327Stop and A326E/K327Stop mutants did process still more slowly than K327Stop.
To determine whether the pAdoMetDC proenzyme processes so much faster than the human because of the highly charged COOH-terminal sequence, the final six residues of the human sequence (QQQQQS) were replaced by a sequence similar to the potato (EEEEKE or QEQEEE). However, these alterations had no effect on the processing rate in the absence or presence of putrescine (results not shown).
Effect of Carboxyl Truncation of AdoMetDC Proenzyme on ActivityDeletions up to K327Stop had only slight effects on the specific activity of processed hAdoMetDC assayed in the presence of putrescine (Table II). Further truncation of the hAdoMetDC by removing Ala326 produced a major reduction in activity to 7% that of wild type. Replacement of this alanine residue by a variety of other amino acids produced only a small decline in activity (Table II). Substitution of glutamic acid had the greatest effect on reducing the activity of the K327Stop mutant from 83 to 42% that of wild type. The potato R336Stop mutant AdoMetDC had about half the activity of wild type (Table II). The decrease was independent of the residue present at the carboxyl terminus. A more detailed study of the R336Stop AdoMetDC indicated the apparent Km for AdoMet was increased from 0.05 to 0.11 mM, which accounts for part of this difference (results not shown).
Our results confirm that the residue forming the pyruvate moiety
after cleavage of the pAdoMetDC proenzyme is Ser73. This is
as expected since it is the equivalent residue to Ser68,
which is known to form the pyruvate in the hAdoMetDC proenzyme (8), and
the sequence surrounding these residues, YVLSESS, is
totally conserved in all of the known eukaryotic AdoMetDC sequences. The equivalent residue has also been identified as the source of
pyruvate in AdoMetDCs from Saccharomyces cerevisiae (9) and
Catharanthus roseus (27). Cleavage of the proenzyme of
either the human or the plant AdoMetDC to form the
and
subunits
was not prevented when either threonine or cysteine was substituted for
this serine, but the rate of processing was greatly reduced. This
finding is similar to that found for two other pyruvoyl enzymes, histidine decarboxylase (4) and phosphatidylserine decarboxylase (37),
and suggests that all of these proenzymes undergo a similar type of
reaction in generating the two subunits and the pyruvoyl prosthetic
group needed for activity.
However, there are several differences between the responses of the
AdoMetDC proenzyme mutants and those of these other proenzymes. First,
the processing was more rapid when threonine was substituted rather
than cysteine, whereas with histidine decarboxylase (4), the reverse
was the case, and with phosphatidylserine decarboxylase (37), the rates
were equal. Second, the serine-to-threonine change reduced AdoMetDC
activity by >99%, whereas both histidine decarboxylase and
phosphatidylserine decarboxylase mutants did retain some enzymatic
activity with this substitution (1). This indicates that
-ketobutyrate cannot substitute for pyruvate in the AdoMetDC
reaction. One possible reason for this might be that the larger
prosthetic group is not compatible with substrate binding.
Third, although the replacement of the critical serine with cysteine in
the hAdoMetDC greatly decreased the activity, which is similar to the
result with the equivalent histidine decarboxylase and
phosphatidylserine decarboxylase mutants (4, 37), this substitution
caused little or no reduction of the activity of the pAdoMetDC. There
are two possible reasons for the loss of activity with the hAdoMetDC.
One is that the mutant proenzyme containing cysteine actually undergoes
an abortive cleavage reaction that fails to generate pyruvate (1, 3).
Such a reaction is known to occur with a mutant histidine decarboxylase
(4) and is facilitated by the greater nucleophilicity of the thiol group of cysteine compared with the hydroxyl group of serine. A similar
reaction occurs when protein splicing intermediates are produced with
cysteine in place of serine at the upstream splice junction (11). These
reactions may be stimulated by exogenous reagents such as thiol
reactants or hydroxylamine, but the rate of cleavage of the mutant
hAdoMetDC was not increased by the addition of excess dithiothreitol
(results not shown). It is therefore more likely that any incorrect
cleavage is spontaneous and is mediated by residues in the hAdoMetDC
sequence. This interpretation would be consistent with the fact that
the pAdoMetDC formed from the S73C mutant was fully active, indicating
that incorrect cleavage does not occur with this protein. An
alternative but less likely explanation is that the presence of the
thiocarboxylate group at the carboxyl terminus of the
subunit
reduces the activity in the hAdoMetDC.
The most striking difference in the processing of the hAdoMetDC and pAdoMetDC proenzymes is that the formation of the mature pAdoMetDC occurs much more rapidly and is not affected by putrescine. Since the potato proenzyme processes so rapidly, any effect of putrescine would be of minimal physiological significance and might be missed in our in vitro experiments. However, our results with the S73C and S73T mutants show unequivocally that putrescine does not accelerate the reaction.
Previous site-directed mutagenesis studies of the hAdoMetDC indicated that the acceleration of processing mediated by putrescine requires an interaction with three Glu residues located at positions 11, 178, and 256 (15, 16). The identification of Asp174 as an additional residue essential for acceleration of processing by putrescine provides support for the suggestion that the binding of two putrescine molecules is necessary for the change in conformation that favors the processing reaction (7, 38). Since all four acidic residues must be present for putrescine activation of the human enzyme, the absence in the potato enzyme of an acidic residue equivalent to human Asp174 may explain the lack of putrescine activation in the potato enzyme, despite the presence of acidic residues equivalent to Glu11, Glu178, and Glu256. It is noteworthy that all of the known putrescine-activated mammalian, parasite, and yeast AdoMetDC sequences contain an acidic residue in a position equivalent to human Asp174, whereas none of the known plant AdoMetDC sequences do and none of the plant enzymes appear to be activated by putrescine. The mechanism of activation of the hAdoMetDC is postulated to involve a conformational change in response to the binding of putrescine to these acidic residues (16, 39). It therefore appears that other residues present in the pAdoMetDC proenzyme ensure the formation of a fully active configuration without the need for the binding of putrescine.
Although the totally conserved residue nearest to the carboxyl terminus of the hAdoMetDC proenzyme is Phe280, only a very limited truncation of eight of the COOH-terminal residues was compatible with processing. A somewhat greater deletion of 25 residues from the longer potato protein was possible. The COOH-terminal regions of the resulting active maximally truncated proteins are the same length, with 46 residues after this last conserved Phe (Fig. 2). Since our results show that the nature of the terminal residue in the minimal length proenzymes is not critical, it appears that it is the length of the protein that is essential for processing. It is likely that this section of the protein forms an essential part of the structure, placing the key residues in position to facilitate the processing.
To whom correspondence should be addressed: Dept. of Cellular and
Molecular Physiology, The Milton S. Hershey Medical Center, Pennsylvania State University College of Medicine, P. O. Box 850, Hershey, PA 17033-0850. Tel.: 717-531-8152; Fax: 717-531-5157; E-mail:
apegg{at}cmp.hmc.psu.edu.
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