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Volume 272, Number 52, Issue of December 26, 1997
pp. 32743-32749
(Received for publication, June 18, 1996, and in revised form, July 3, 1997)
From the Section of Molecular Therapeutics, Department of
Experimental Pediatrics, University of Texas MD Anderson Cancer Center,
Houston, Texas 77030
The complete hGSTP1*C, consisting of
7 exons and 6 introns contained in 3116 base pairs, was isolated from a
cosmid genomic library of a glioblastoma multiforme cell line. Although
the promoter of hGSTP1*C was identical to that of the
previously reported GST-Pi gene, several of its structural features had
not been previously described. These include several nucleotide
transitions and transversions. Transitions of A The glutathione S-transferases
((GSTs)1 EC 2.5.1.18) are
best known for their ability to catalyze the neutrophilic attack of the
sulfur atom of glutathione by a variety of electrophilic endogenous and
exogenous compounds (1-5), producing water-soluble and often less
reactive metabolites. Much interest is currently being focused on the
Pi class GST because the gene is up-regulated during the early stages
of oncogenesis and it is the most significantly overexpressed GST gene
in many human tumors including gliomas (6-17). A large number of
studies have also shown the high levels of GST-Pi expression to be
associated directly with tumor drug resistance and with poor patient
survival (9, 12, 16-19). In gliomas, the level of GST-Pi
expression correlates positively with tumor grade (15, 20), and
in glioma cell lines, high GST-Pi expression has been correlated with
increased resistance to 1,3-bis(2-chloroethyl)-1-nitrosourea (12).
Recently, we reported the isolation of three full-length cDNAs,
hGSTP1*A, hGSTP1*B, and hGSTP1*C,
corresponding to closely related GST-Pi mRNAs and encoding
structurally and functionally different GST-Pi proteins (21). Of the
three allelic GST-Pi gene variants, hGSTP*1C was shown to be
expressed at a much higher frequency in malignant gliomas than in
normal brain, placenta, and lymphocytes. To facilitate studies aimed at
clarifying the molecular mechanisms underlying the overexpression of
the GST-Pi gene in human gliomas, we undertook in this study the
isolation and characterization of the hGSTP*1C gene from
cells of a human glioblastoma multiforme cell line that expresses high
levels of GST-Pi gene transcripts and protein and is resistant to
2-chloroethylnitrosoureas and cisplatin. We compared the isolated gene
with the previously described GST-Pi gene and examined its regulation
by all-trans retinoic acid (RA).
Restriction endonucleases, Klenow enzyme, and T4
DNA ligase were purchased from Boehringer Mannheim. Proteinase K, RNase
A, and all-trans RA were from Sigma. SuperCos 1 cosmid vector,
Bluescript phagemid II, Gigapack II packaging system, calf intestinal
alkaline phosphate, pBK-CMV expression vector, and the
methylstyrylbenzene mammalian transfection kit were purchased from
Stratagene, La Jolla, CA. [35S]dATP and
[ The MGR3 human glioblastoma multiforme cell
line was established in our laboratory from a primary specimen, as
described previously (22). It is glial fibrillary acidic protein
positive by immunocytochemistry, and the cells show the typical
pleomorphism of neoplastic glial cells. The cell line is routinely
maintained in Dulbecco's modified Eagle's medium supplemented with
10% fetal calf serum and nonessential amino acids and had undergone 11 in vitro passages before being used in these studies. MCF7,
obtained from the American Type Tissue Collection, Gaithersburg, MD, is
a human mammary carcinoma cell line that, under normal physiological
conditions, does not express detectable basal levels of GST-Pi
transcripts or protein.
These were performed using
standard techniques (23). For Southern analysis, genomic DNA was
extracted from MGR3 cells using the phenol/chloroform procedure (23),
and for the Northern blots, total RNA was isolated with the acid
guanidinium thiocyanate/phenol/chloroform procedure (24).
Where indicated, PCR was performed in a DNA
thermocycler (Perkin-Elmer). The 100-µl reaction mixture contained 50 ng of SuperCos-GST-Pi or other DNA template, 500 ng each of forward and
reverse primers, 10 × PCR buffer, 100 nM each dATP,
dCTP, dGTP, and dTTP. 2.5 units of Amplitaq polymerase was added, and
the mixture was overlaid with mineral oil. After 1 cycle of denaturing
(95 °C for 90 s), annealing (55 °C for 2 min), and chain
extension (72 °C for 3 min), 35 cycles of 95 °C (1 min),
55 °C (2 min), and 72 °C (3 min) were performed.
High molecular weight genomic DNA from
MGR3 cells was partially digested with Sau3A1, and the
fragments were ligated into the SuperCos 1 vector. The constructs were
packaged into bacteriophage lambda particles using the Gigapack II
packaging system, and the resulting phage used to infect the bacterial
host strain XL-1 Blue MR. After amplification, primary and secondary
colonies were screened with a 0.5 µg of SuperCos-GST-Pi DNA was digested with NotI and
HindIII, electrophoresed in 1.2% agarose, and
Southern-hybridized with a GST-Pi probe. GST-Pi-positive fragments were
purified, ligated into NotI and HindIII sites of
the pBluescript II phagemid vector, and transfected into competent XL-1
Blue cells. Overlapping GST-Pi fragments were amplified by PCR, the PCR
products were electrophoresed in 1.2% agarose, and fragments of
appropriate sizes were excised, purified, blunt-ended with 0.05 unit/pmol DNA Klenow enzyme, and ligated into EcoRV-digested
and calf intestinal alkaline phosphate-treated pBluescript phagemid II.
Competent XL-1 Blue cells were transfected with the vector constructs,
and GST-Pi-positive clones were identified by Southern hybridization and used for sequencing.
Nucleotide
sequencing was performed with the 35S-dideoxynucleotide
chain termination method (25). Each gene fragment was sequenced in both
directions, and each sequencing was performed twice to exclude PCR
artifacts. Sequencing primers were designed from published GST-Pi gene
sequences and from the sequence of the cosmid.
Analyses of the nucleotide sequence and structural organization of the
isolated GST-Pi gene were performed using a commercial DNA sequence
analysis package (Macmolly Tetra, Berlin, Germany). The sequence was
compared with those of the previously described GST-Pi genes from the
HPB-ALL (26) and the MCF7 (27) cell lines (GenBankTM
accession numbers X0894-6 and X08058, respectively). For further analysis of introns 5 and 6 of the isolated GST-Pi gene, a 1-kb DNA
fragment containing intron 5 and a 450-bp fragment containing intron 6 as well as the regions flanking these introns were amplified using the
primer pairs listed in Table I. The PCR
products were purified and digested to confirm the presence of
SpeI and AvaII restriction sites in introns 5 and
6, respectively, both of which had been predicted by nucleotide
sequence analysis to be present in the cloned GST-Pi gene. Because of
previous data indicating that the GST-Pi gene and its promoter could be
regulated by retinoic acid (28, 29), we analyzed the cloned GST-Pi gene
for the presence of sequences homologous to known retinoic acid
response element (RARE) consensus sequences (30).
Table I.
Primers for PCR amplification of overlapping GST-Pi DNA fragments from
SuperCos-GST-Pi clone and of specific regions of GST-Pi gene
The complete GST-Pi gene was obtained by ligating a 2.2-kb
NotI/BamHI fragment to a 0.9-kb
BamHI/KpnI fragment, both from SuperCos-GST-Pi,
into the NotI/KpnI site of the pBK-CMV expression vector (Stratagene) in which eukaryotic expression is driven by the
cytomegalovirus (CMV) immediate early promoter. The resulting GST-Pi
expression construct, designated pGST-Pi-CMV, contained the entire
3.1-kb GST-Pi gene consisting of 131 bp of 5 pGST-Pi-CMV was transfected into exponentially growing Cos 1 cells using the calcium phosphate method (23). After 48 h, the cells were harvested, washed twice in phosphate-buffered saline, homogenized, and centrifuged at 20,000 × g for 20 min at 4 °C. Protein concentrations and total GST enzyme activity in the supernatants were determined as described previously (12, 31), the latter using 1-chloro-2,4-dinitrobenzene as substrate. Specific GST-Pi protein content was determined by Western blotting as we had previously described (12). RA Effect on GST-Pi Gene Expression in Glioma CellsThese studies were performed to examine the responsiveness of the GST-Pi gene to RA. Exponentially growing MGR3 cells from which the GST-Pi gene was isolated were treated with 1 µM all-trans RA, and after 24 and 48 h of incubation at 37 °C, total RNA and protein were extracted from control and RA-treated cells, and GST-Pi gene transcript and protein levels were determined by Northern and Western blotting, respectively, as we described earlier. RA Effects on Full-length and RARE-deleted Constructs of GST-Pi Expression VectorsTo further characterize the functionality of
the RAREs in the cloned GST-Pi gene, the RA response of the expression
vector, pGST-Pi-CMV, containing the full-length hGSTP1*C
gene and of one, pGST-Pi-CMV-RARE( Exponentially growing MCF7 cells were transfected with
pGST-Pi-CMV-RARE( Construction and Screening of Genomic Library Approximately 106 colonies of the MGR3 SuperCos 1 genomic library were initially screened with the GST-Pi cDNA probe. Twenty positive colonies were subjected to secondary screening, after which two were selected for tertiary screening. One positive clone designated SuperCos-GST-Pi containing the intact GST-Pi gene was selected for further analysis. Restriction Endonuclease Mapping of SuperCos-GST-PiThe results of Southern analysis of NotI- and HindIII-digested SuperCos-GST-Pi with a GST-Pi cDNA probe were used to construct a simplified restriction map of the SuperCos-GST-Pi clone. The map showed the GST-Pi gene to be located between two NotI sites of the SuperCos-GST-Pi clone and to overlap two HindIII fragments. The entire gene was contained within a 2.1-kbNotI-HindIII fragment and an 11.5-kb HindIII fragment. This was subsequently verified by computer analysis of the final DNA sequence. Nucleotide Sequence and Structural AnalysisThe nucleotide
sequence of the isolated GST-Pi gene is shown in Fig.
1. The sequenced region was 3116 bp in
size and contained the entire GST-Pi gene, consisting of 7 exons and 6 introns located within nucleotides +30 and +2762. Each of the
exon-intron boundaries is characterized by the AG and GT splicing
signals at their 5 Fig. 1. Nucleotide and deduced amino acid sequences of the complete GST-Pi gene. The AP-1 and SP-1 sites, TATAA box, ARE, IRE, RARE, and the AATAAA polyadenylation signal are underlined. AG/GT splicing signals (underlined) were used to determine intron/exon boundaries. Codon changes are in boldface. Overlapping fragments of the GST-Pi gene were cloned into pBluescript phagemid II and sequenced by the 35S-dideoxynucleotide method. [View Larger Version of this Image (110K GIF file)] Comparison of Isolated GST-Pi Gene with Previously Described Human GST-Pi Genes Table II summarizes
the structural differences between the GST-Pi gene isolated from the
MGR3 cell line and the previously reported GST-Pi gene from the MCF7
cell line (27). Two transitions, an A
In addition to the three nucleotide transitions in exons 5, 6, and 7, several intronic differences were also observed between the MGR3 and
the MCF7 GST-Pi genes. A region of high homology with the core sequence
(CCCGCCTC) of the insulin response element A, IRE-A (32) was observed
at +45 to +52. This IRE differed from that previously described at the
same location in the GST-Pi gene isolated from the MCF7 (27) by having
a guanine insertion at +51. The insertion created two CpG dinucleotides
and a cleavage site (CG The structure
of the pGST-Pi-CMV expression vector is shown in Fig.
2, and the Western blot analysis for
GST-Pi protein in control Cos-1 cells and in Cos-1 cells 48 h
after transfection with the pGST-Pi-CMV are shown in Fig.
2b. Densitometry of the Western blots showed a
2.9-fold-increased GST-Pi protein content in the transfected cells
relative to controls. Bulk GST enzyme activity was 51.9 and 22.0 nmol/min/mg protein in transfected and control cells, respectively. The
similar levels of increase in total GST activity and specific GST-Pi
content indicate that the increase in GST enzyme activity was due,
primarily, to the overexpressed GST-Pi protein.
Fig. 2. a, structure of pGST-Pi-CMV-eukaryotic expression vector construct used to examine expression of cloned hGSTP1*C gene. b, Western blot analysis of extracts of whole cells and of control and pGST-Pi-CMV-transfected Cos-1 cells. Cos-1 cells were transfected with pGST-Pi-CMV using the calcium phosphate method. After 48 h at 37 °C and 5% CO2, the cells were harvested, homogenized, and centrifuged at 20,000 × g. 25 µg of protein extracts were electrophoresed in a 10% polyacrylamide gel, transferred to nylon membranes, and probed for GST-Pi protein by the chemiluminescence method. HP, GST, control and GST-II represent human placental GST-pi, protein from untreated cells and protein from pGST-pi-CMV transfected cells. [View Larger Version of this Image (26K GIF file)] RAREs in Isolated GST-Pi Gene RAREs are direct repeat
regulatory motifs to which RA-RAR complexes bind and mediate
transcription of RA-responsive genes (30, 34-36). We report for the
first time the presence of RARE sequences in the GST-Pi gene. These
RARE motifs are located in intron 5 of the GST-Pi gene, in a region
spanning nucleotides +1521 to +1644 and consisted of one palindromic
and six direct repeats of RARE concensus half-sites arranged in tandem.
Fig. 3 shows the region of the GST-Pi
gene with the six direct repeats and one palindromic RARE half-sites,
and Table III compares the consensus
RAREs in the isolated GST-Pi gene with known RAREs in other selected
genes.
Fig. 3. Region of intron 5 of the GST-Pi gene showing RARE concensus half-sites arranged in tandem between +1521 and +1644. The first RARE is palindromic. The regions, designated RARE-1, RARE-2, and RARE-3 contain direct repeat RARE half-sites with the number of intervening nucleotides shown to be required for functionality. [View Larger Version of this Image (19K GIF file)]
The results of these studies designed to examine response
of the GST-Pi gene to RA are summarized in Fig.
4, a and b.
Northern analysis (Fig. 4a) showed a moderate but
significant increase in the level of GST-Pi gene transcripts in MGR3
cells exposed to 1 µM all-trans retinoic acid over 24 and
48 h, with a maximum of a 3.4-fold increase relative to control
levels at 48 h. The Western blot analysis (Fig. 4b)
showed a similar increase in GST-Pi protein at 24 and 48 h after
exposure to 1 µM all-trans-retinoic acid. After 48 h, GST-Pi protein content of RA-treated cells increased by 4.2-fold
relative to untreated controls.
Fig. 4. Effect of all-trans RA on GST-Pi gene expression in MGR3 cells. Cells were treated with 1 µM RA, and after 24 and 48 h, were harvested. a, Northern blotting. Total RNA was extracted from the cells, purified, and electrophoresed at 7.5 µg/lane in formaldehyde-agarose gels. After transfer onto nylon membranes, hybridization was with a 32P-labeled full-length GST-Pi cDNA. b, Western blot analysis. Cell extract proteins were electrophoresed in SDS-polyacrylamide gel electrophoresis, transferred onto polyvinylidene membranes and probed with a human GST-Pi-specific monoclonal antibody using the chemiluminescent technique. Both the mRNA and protein bands were quantitated by densitometry and used to determine the degree of GST-Pi gene induction by all-trans RA. GAPDH, glyceraldehyde-3-phosphate dehydrogenase. [View Larger Version of this Image (32K GIF file)]
To examine whether the RA response of the hGSTP1*C gene was
mediated via the RARE in the gene, pBK-CMV control vector, and the
expression vector constructs, pGST-Pi-CMV and pGST-Pi-CMV-RARE( Fig. 5. Response of MCF7 cells transfected with RARE-containing and RARE-deleted hGSTP1*C gene to all-trans RA. Tumor cells were transfected with control pBK-CMV, pCMV-GST-Pi, and pCMV-GST-Pi-RARE(-) vectors. After transfection, one set of cultures was treated with 1 µM all-trans RA, and another set was treated with vehicle control. 48 h later, total RNA was extracted and electrophoresed at 5 µg/lane. After membrane transfer, the blots were hybridized with a 32P-labeled GST-Pi cDNA probe. The lanes contained RNA from cells transfected with the following: lanes 1 and 2, control pCMV vector; lanes 3 and 4, pCMV-GST-Pi; and lanes 5 and 6, pCMV-GST-Pi-RARE(-). Lanes 1, 3, and 5 contained RNA from cells without RA treatment, whereas the RNA in lanes 2, 4, and 6 were from cells that had been treated with 1 µM RA for 48 h. [View Larger Version of this Image (21K GIF file)]
The human GST-P1 gene locus has now been shown conclusively to be polymorphic (21). Of the three allelic gene variants, however, only one, hGSTP1*A, has been isolated (26, 27). We describe here the cloning and the structural and functional characterization of another human GST-Pi gene, hGSTP1*C, that in preliminary studies has been shown to be expressed at an increased relative frequency in malignant gliomas compared with normal lymphocytes. The sequenced region of the isolated clone consisted of 3116 nucleotides and contained the complete GST-Pi gene consisting of seven exons and six introns and encoding 210 amino acids. Several of the structural features previously observed in the hGSTP1*A gene isolated independently by Cowell et al. (26) and by Morrow et al. (27) were present in the isolated hGSTP1*C gene. These include a TATAA box, two SP-1 sites, and one AP-1 site in the promoter region. An anti-oxidant response element, ARE, was also observed in the AP-1 site of the isolated hGSTP1*C gene. This ARE, also recently observed in the GSTP1*A gene (37), is identical to the ARE core sequence (GTGACTCAGC) of the human NADPH:quinone oxidoreductase gene (3, 38) and has a high degree of homology to the ARE (GTGACAAAGC) in the rat GST-Ya gene (3, 39). Several important differences were observed between the GST-Pi gene
described here and that previously reported (26, 27). These include
nucleotide transitions of A In this study, we report for the first time the presence of RAREs in
the human GST-Pi gene. The six direct repeat and one palindromic RARE
half-sites were all located in intron 5 and are highly homologous to
the concensus RARE half-site, 5 It was of interest that the RARE region in the hGSTP1*C
gene, although intronic, was functional and could regulate RA response of the GST-Pi gene. This contrasts with the majority of previously described RAREs, which are cis-acting and are located in the
5 The observations in this study that RA increases GST-Pi expression in tumor cells transfected with the hGSTP1*C gene containing the RARE but not with a gene in which the RARE is deleted contrast with the results of a previous study that showed RA-mediated suppression of the GST-Pi promoter in a chloramphenicol acetyltransferase cDNA construct (28) and suggest a complex mechanism of cellular GST-Pi gene regulation based in part on the previously described antagonism between the AP-1 site and RA gene induction (56-58). In this model of gene regulation, suppression of the GST-Pi gene occurs via competitive inhibition of the binding of AP-1-binding transcription factors such as jun and fos to the AP-1 site by the RA-RAR complex, as has also been suggested in a previous study (28). GST-Pi gene activation, on the other hand, will be mediated through the binding of the RA-RAR complex to RAREs in the GST-Pi gene. Such a model is also consistent with a previously proposed general mechanism for RA-mediated gene regulation by ligand-activated RARs (58). It is further supported by the fact that the activation of the GST-Pi gene by all-trans RA in MGR3 cells observed in this study is a delayed process similar to the late transcriptional induction of the laminin B1 gene by RA (59) and consistent with a mechanism involving RAR-ligand binding to RAREs. The ability of RA to activate the GST-Pi gene has significant implications for both cancer prevention and chemotherapy. It suggests that part of the molecular basis for the cancer preventive action of long term administration of retinoic acid (60) may involve induction of GST-Pi gene expression. Given the important role that GST-Pi plays in the ability of tumor cells to inactivate anticancer agents, these results also suggest that RA pretreatment is likely to increase tumor resistance to alkylating agent chemotherapy. The isolation of a complete variant GST-Pi gene is an important step in the study of this gene and should facilitate future studies on its molecular regulation in both normal and neoplastic cells. * This work was supported by NCI, National Institutes of Health Grant CA55835 and by a research award from the Kleberg Foundation. Part of this work was performed in fulfillment of the thesis requirement for the master of science degree in biochemistry for H.-W. Lo at the University of Texas School of Biomedical Sciences, Houston, Texas.The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact. The nucleotide sequence(s) reported in this paper has been submitted to the GenBankTM/EMBL Data Bank with accession number(s) U21689.
To whom correspondence should be addressed: Tel.: 713-792-3495;
Fax: 713-792-5514; E-mail: Ali-Osman{at}utmdacc.mda.uth.tmc.edu.
1 The abbreviations used are: GST, glutathione S-transferase; RA, retinoic acid; RARE, RA response element; PCR, polymerase chain reaction; kb, kilobase; bp, base pair(s); CMV, cytomegalovirus; AP1, activator protein 1; ARE, anti-oxidant response element; IRE, insulin response element.
Volume 272, Number 52,
Issue of December 26, 1997
pp. 32743-32749
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