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J Biol Chem, Vol. 273, Issue 15, 8598-8606, April 10, 1998
From the Laboratory of Molecular and Cellular Biology, NIDDK,
National Institutes of Health, Bethesda, Maryland 20892
We have isolated and characterized a cDNA
encoding a transcription activating factor for the mouse selenocysteine
tRNA (tRNAsec) gene from mouse mammary gland. The
full-length cDNA, designated m-Staf, has a 1878-base
pair open reading frame encoding 626 amino acids. The predicted amino
acid sequence of m-Staf is highly homologous to that of Staf, another
selenocysteine tRNA gene transcription activating factor of
Xenopus laevis. Like Staf, m-Staf contains seven tandemly
repeated zinc fingers and four repeated motifs. Gel shift assays
indicated that the recombinant m-Staf specifically bound to the
activator element region in the mouse tRNAsec gene.
Transient co-transfection experiments in Drosophila
Schneider cells, which lack endogenous Staf-like binding activity,
showed that m-Staf increased the mouse tRNAsec gene
transcription about 15-fold, whereas it stimulated Pol
II-dependent thymidine kinase promoter only 2-fold.
Northern blot analysis detected the presence of a 3.4-kilobase pair
m-Staf transcript, which was widely but differentially expressed in
various murine tissues. The binding activity of m-Staf in mouse mammary
gland was undetectable during virgin and postlactating periods but
increased markedly in parallel with the increase of tRNAsec
transcript during the periods of pregnancy and lactation, when the
gland undergoes growth and development. These results indicate that
m-Staf is a transcriptional activator of the mouse tRNAsec
gene and that its binding activity in the mammary gland undergoes developmental alterations.
Selenium has been established as a nutritional requirement for the
essential trace elements and shown to be indispensable for the
biosynthesis of selenoproteins (1). These selenoproteins include type I
thyroxine 5'-deiodinase in thyroid hormone metabolism (2), those of the
glutathione peroxidase family in an antioxidative system (3, 4), and
several other newly found ones, such as selenoprotein P, selenoprotein
W, and thioredoxin reductase (5-8). Both type I thyroxine
5'-deiodinase and glutathione peroxidase play an important function in
metabolic activities of mammary cells during lactation (9-12).
Selenium is incorporated into selenoproteins in the form of
selenocysteine, and its incorporation is directed by a specific UGA
codon, which normally functions as a stop codon in both procaryotes and
eucaryotes (13). The selenocysteine tRNA
(tRNAsec)1 serves
as a donor of selenocysteine to nascent selenoproteins in response to
the specific UGA selenocysteine codons (13, 14). This reaction also
requires a selenocysteine insertion sequence, a cis-acting mRNA
element, and a specialized elongation factor, the SELB protein (15,
16). It has been shown that transfection of plasmids expressing
tRNAsec into human 293 cells, an embryonic kidney cell
line, increases the level of 5'-deiodinase activity (17), suggesting
that the amount of tRNAsec is critical for the regulation
of selenoprotein biosynthesis.
Extensive analysis of the tRNAsec gene promoter has been
reported for Xenopus laevis (18-21). Like other tRNA genes,
this gene is transcribed by RNA polymerase III (Pol III) (22). Usually, transcription of tRNA genes requires two promoter elements, named A box
and B box, situated inside the coding region. However, the tRNAsec gene is atypical in that its transcription is not
dependent on the A box, which is naturally debilitated in this gene,
but requires the B box and three other upstream elements, such as an
activator element (AE) located in a distal sequence element, a proximal sequence element, and a TATA motif (18-21). These elements are well
conserved among murine and bovine species as well as in X. laevis (23). The factors binding to the proximal sequence element, the TATA motif, and the B box have been well characterized, but the
ones to the AE have not (14-17). Recently, a cDNA encoding a
DNA-binding protein to the AE has been cloned from X. laevis and named Staf (selenocysteine tRNA gene transcription activating factor) (24). The structure of Staf is characterized by the presence of
seven tandemly repeated zinc fingers that facilitate its DNA binding
activity (24). Staf has been shown to transactivate tRNAsec
gene transcription in a X. laevis oocyte system (24).
We have been studying the regulatory mechanisms involved in
developmental and tissue-specific gene expression in the mouse mammary
gland (25). During the course of our study to clone and characterize
cDNA for mammary transcription factors, we have cloned a cDNA
encoding a protein containing zinc finger motifs and named it
m-Staf. In this report, we describe the molecular cloning
and functional characterization of m-Staf and present evidence
indicating that it is a mouse counterpart of Staf, which activates
transcription of the mammalian tRNAsec gene. We also
present data suggesting that it is involved in regulating mouse
tRNAsec gene expression during the development of mouse
mammary gland.
cDNA Cloning--
A mouse mammary gland cDNA library
(Stratagene) was screened using a 32P-labeled probe
corresponding to the DNA binding domain of mouse YY1 cDNA (26).
Among several clones obtained, one clone, named 1BA, was sequenced and
analyzed further. The 5' and 3' regions of the gene were obtained from
a mouse spleen marathon-ready cDNA (CLONTECH)
by the method of 5'- and 3'-RACE (rapid amplification of cDNA ends)
(27). Using a set of primers corresponding to the 5' or 3' non-coding
regions, a full-length cDNA was amplified from mouse mammary gland
poly(A)+ RNA and ligated to a TA cloning vector
(Invitrogen). The resultant plasmid was named pCRStaf. The sequence was
verified by sequencing three independent clones.
Plasmid Constructions--
Plasmids pCRfull, pCR 235/+7 region of mouse
tRNAsec (23) was linked to chloramphenicol
acetyltransferase (CAT) reporter plasmids. Mutations corresponding to
MM0, MM1, and MM3 (see Table I) were introduced to the element by
PCR-based mutagenesis method (28). The promoter elements were ligated
into the PstI-XbaI site of pCAT Basic vector
(Promega) to obtain reporter plasmids termed pTRwt, pTRmm0, pTRmm1, and
pTRmm3.
The 237/ 193 region of mouse tRNAsec gene, with and
without a mutation, was ligated into the upstream region of the herpes
simplex virus thymidine kinase promoter-CAT fusion plasmid and named
wAE-tkCAT and mAE-tkCAT, respectively.
Preparation of Recombinant Proteins--
Recombinant m-Staf
proteins were expressed by using the His-patch ThioFusion System
(Invitrogen). The expression constructs pThio-full and pThio- Northern Blot Analysis-- Total RNA from various tissues was prepared by the CsCl precipitation method (29) or by the acid phenol extraction method (Ambion). For detection of m-Staf mRNA, total RNAs were electrophoresed on formaldehyde-agarose gels, blotted onto a Hybond-N+ (Amersham Pharmacia Biotech), and hybridized with a 32P-labeled probe bearing the +1/+252 region of m-Staf cDNA. For detection of tRNAsec, total RNAs were separated by electrophoresis on a 6% polyacrylamide-8 M urea gel (Novex), transferred to a Nylon+ membrane (Novex) by electroblotting, and hybridized with a 5'-end 32P-labeled oligonucleotide (5'-GCACCCCAGACCACTGAGGATCATCCGGGC-3') specific for the mouse tRNAsec. Preparation of Nuclear Extracts and Gel Shift Assays-- Aged-matched virgin (3 months old) and pregnant (9-11 days of gestation) C3H/HeN female mice were obtained from the Animal Center of the National Institutes of Health. Animal care and study protocol were in full compliance with the National Institutes of Health guidelines. Nuclear extracts were prepared from thoracic mammary glands according to the method described previously (25). Nuclear extracts or recombinant proteins were mixed with 3 µg of poly(dI-dC) (Sigma) in 17 µl of reaction buffer containing 14 mM Hepes, pH 7.9, 12% glycerol, 90 mM NaCl, 2.5 mM MgCl2, and 1 mM dithiothreitol, and incubated for 15 min on ice. Gel shift assays were performed using a double-stranded oligonucleotide corresponding to the 233/ 198 region
of the mouse tRNAsec gene. Following the addition of the
32P-labeled probe (3 × 104 cpm), the
reaction mixtures were incubated for 30 min at 25 °C and subjected
to electrophoresis on a 4% polyacrylamide gel in 0.25× TBE.
Transfections and CAT Assays--
Drosophila SL2
cells were grown at 22 °C in Schneider's medium supplemented with
10% heat-inactivated fetal calf serum. For transfection, 3.5 × 106 cells were plated on each of 3.5-cm-diameter dishes.
Five µg of CAT construct, 5 µg of expression plasmid, and 2 µg of
ADH- -gal
by the calcium phosphate method. After 40 h, cells were harvested
for subsequent assays.
Molecular Cloning of m-Staf-- The DNA binding domain of mouse YY1-cDNA encoding transcription factor bearing four C2-H2 type zinc fingers (26) was used for screening a mouse mammary gland cDNA library at low stringency. One positive clone, 1BA, was further analyzed. The complete nucleotide sequence of this clone (Fig. 1) indicated that it contained a 1878-nucleotide open reading frame (positions 64-1941), which potentially encoded a 67.5-kDa polypeptide consisting of 626 amino acid residues. The predicted amino acid sequence revealed that this protein contained four repeated motifs between residues 39 and 135 and a zinc finger domain of the C2-H2 type tandemly repeated seven times between residues 220 and 428.
Tissue Distribution of m-Staf mRNA-- Total RNA prepared from various tissues of female mice was subjected to Northern blot analysis using m-Staf cDNA as a probe (Fig. 3). A single band of transcript (3.4 kb) was detected in all tissues examined. The level of the transcript relative to that of GAPDH mRNA was highest in the lung and lowest in the liver. These results indicate that the m-Staf gene is widely but differentially expressed in mouse tissues.
Recombinant m-Staf Binds to the AE Region--
We produced two
recombinant m-Staf proteins, rStaf-full, corresponding to amino acid
residues 1-626, and rStaf-
222/ 220)
and TGC ( 216/ 214), are important binding elements (Table I). The
recombinant protein rStaf- 53, in which the three of four repeated
motifs and the 84 amino acid residues in the carboxyl terminus were
deleted, also could bind to the probe (lane 14). The
sequence specificity of rStaf- 53 binding was the same as that of
rStaf-full as judged by competition experiments (data not shown). These
results indicate that residues 118-542, which contain the zinc
fingers, are sufficient for the DNA binding activity of m-Staf.
Recombinant m-Staf Functions as a Transcriptional Activator on
Mouse tRNAsec Promoter--
We next examined whether
m-Staf functions as a transcriptional activator of the mouse Pol
III-dependent tRNAsec gene. For transient
co-transfection experiments, Drosophila SL2 cells, which do
not have endogenous Staf-like binding activity (24), were used. The
expression vectors ADH-pEXPfull, ADH-pEXP
53 (mS53) expressing amino acid residues 118-542 (Fig. 4A) on transcriptional activity of pTRwt. Co-transfection of
mS53 did not increase the CAT expression of pTRwt (Fig. 5A,
columns 1 and 3), suggesting that some region(s) other
than the zinc finger domain is important for the transcriptional
activation. On the other hand, co-transfection of ADH-pEXP 3 (mS3)
expressing amino acid residues 1-542 produced approximately a 13-fold
increase in CAT activity (Fig. 5A, columns 1 and
4). These data suggest that amino acid residues 1-117,
which contain three of the four repeated motifs, are important for the
transcriptional activation, whereas amino acid residues 543-626 are
dispensable.
To assess the possible action of m-Staf on transcription mediated by
Pol II-dependent promoter, we examined its effect on reporter plasmids, AE-linked thymidine kinase promoter-CAT (wAE-tkCAT) or its mutated form, mAE-tkCAT. As shown in Fig. 5B,
cotransfection of mS increased the activity of wAE-tkCAT only 2-fold
(columns 1 and 2), whereas the activities of
mAE-tkCAT showed no increase (columns 3 and 4).
These data, together with those presented in Fig. 5A,
suggest that m-Staf preferentially stimulates Pol
III-dependent tRNAsec promoter.
Another expression vector, pEXPfull, was co-transfected with pTRwt into
two mammalian cell lines, HepG2 and Chinese hamster ovary. The CAT
activity increased about 8-fold even in the absence of pEXPfull,
whereas its addition did not enhance the CAT activity. This was
probably due to the high levels of endogenous Staf-like activity in
HepG2 and Chinese hamster ovary cells (data not shown).
m-Staf Binding Activity in Mouse Mammary Gland at Various Reproductive Stages-- Cloning of the m-Staf cDNA and detection of its transcript in mouse mammary gland prompted us to examine the activity of m-Staf in the gland. Gel shift assays using nuclear extracts from mammary glands of pregnant mice revealed the presence of two retarded bands (Fig. 6A, lane 1). Competition experiments indicated that the DNA binding activity of the upper band had the same sequence specificity as that of the recombinant m-Staf (Fig. 6A, lanes 2-13, and Fig. 4B) whereas the lower band showed no sequence-specific DNA binding activity and thus was considered to be nonspecific. In addition, the migration rate of the upper band was found to be similar to that formed by the recombinant m-Staf (data not shown). These data indicate the presence of endogenous m-Staf in the mammary glands.
The Level of tRNAsec in Mouse Mammary Gland at Various Reproductive Stages-- Because m-Staf was shown to be a positive transcriptional regulator of the mouse tRNAsec gene, it was of interest to compare the levels of tRNAsec transcript and m-Staf binding activities in mouse mammary gland at various reproductive stages. As shown in Fig. 7, a mouse tRNAsec transcript having 87 bp was detected as a single band. Its level in the mammary gland increased substantially during pregnancy and lactation (Fig. 7, lanes 2 and 3), whereas it remained at relatively low levels during virgin (lane 1) and postlactating (lane 4) periods.
In this study, we cloned a cDNA encoding a zinc finger protein from mouse mammary gland. The predicted amino acid sequence of this clone indicates that it contains the seven tandemly repeated C2-H2-type zinc fingers and the four repeated motifs, which are highly homologous with Staf from X. laevis. Accordingly, we have designated this cDNA m-Staf. However, we found several structural differences between m-Staf and Staf. First, Staf has additional amino acid residues at the amino terminus and contains the third methionine residue at the position corresponding to the translation start site of m-Staf. Second, m-Staf contains an additional 54 amino acid residues downstream of the zinc finger domain. The nucleotide sequence of the inserted portion is 5'-GTCAACA- - - -CAG-3', which is identical to the consensus sequence of the intron donor and acceptor site (33), suggesting that this portion might originally have been an intron, which has evolved into an exon. The sequence is no longer spliced out because RT-PCR analysis demonstrated that mouse mammary gland does not contain any Staf gene products that lack the 54 amino acid residues (data not shown). In addition, these amino acid residues are also present in the same downstream region of human zinc finger protein ZNF143, suggesting that they are well conserved in mammalian species. We obtained several lines of evidence indicating that m-Staf is a
transcriptional activator of the mouse tRNAsec gene. Like
Staf, the recombinant m-Staf, rStaf-full, was shown to bind to the
15-base pair AE region of the mouse tRNAsec gene in a
sequence-specific manner. Competition assays using various mutated
sequences indicate that the two sequences CCA ( Transfection experiments showed that expression vectors for both m-Staf
(ADH-pEXPfull) and one truncated form of m-Staf (ADH-pEXP We found that m-Staf stimulated transcription of tRNAsec Pol III-dependent promoter but had only minimal effect on AE-linked thymidine kinase Pol II-dependent promoter in transfection experiments using Drosophila cells. These cells were used because they do not contain any detectable level of Staf-like binding activities. In contrast to our present findings, it was reported that transfection of Staf in Drosophila cells was not effective in stimulating transcription of the X. laevis tRNAsec Pol III, although Staf markedly activated the AE-containing Pol II promoter (24). The transcriptional activity of Staf could only be demonstrated by using a X. laevis oocyte system into which Staf mRNA was microinjected prior to introduction of the tRNAsec-CAT reporter gene. The observed difference in the transcriptional activity of the two Stafs transfected in Drosophila cells could be explained by the aforementioned structural difference of the two proteins or by the source of tRNAsec Pol III promoter used in reporter plasmids, i.e. mouse versus X. laevis. These differences could influence the functional properties of Stafs in forming the active transcriptional complex. Our studies of m-Staf in mouse mammary gland indicated that m-Staf binding activities changes as a function of reproductive stage. The binding activity of m-Staf in the mammary gland was undetectable at virgin and postlactating stages, when the gland is developmentally dormant. However, the binding activity increased markedly during the periods of pregnancy and lactation, when the mammary gland undergoes extensive growth and differentiation (36). Thus, the change in the m-Staf binding activity in the gland appears to be correlated to the developmental status of the mammary tissue. Because the development of the mammary gland is stimulated by various steroid and polypeptide hormones (36), the binding activity of m-Staf in the gland also may be hormonally regulated. In addition, we found that the level of tRNAsec in the mammary gland increased during pregnancy and lactation largely in parallel with that of m-Staf binding activity. These findings are consistent with the view that m-Staf is involved in the regulation of tRNAsec gene transcription. It is noted, however, that both virgin and postlactating mammary glands had no detectable m-Staf binding activity but showed low levels of tRNAsec transcript. It is possible that the basal level of tRNAsec gene transcription in developmentally dormant glands is maintained by other transcription factors acting on the basal promoter elements (18, 21). The parallel increase in tRNAsec and m-Staf binding activity in the mammary gland during pregnancy and lactation is noteworthy because the production of at least two selenoproteins, glutathione peroxidase (9) and type I thyroxine 5'-deiodinase (10-12), is found to increase in the gland during these periods. Type I thyroxine 5'-deiodinase is the best characterized selenoprotein in the mammary gland; it catalyzes monodeiodination of the prohormone thyroxine (T4) to form a more active hormone, 3,5,3'-tri-iodothyronine (T3). Its activity in the mammary gland increases during lactation (10) and correlates well with lactational intensity, as judged by litter size (11). These observations are consistent with the view that the deiodinase plays a key role in maintaining lactogenesis by catalyzing the production of T3 (12). Although the mechanisms of induction of type I thyroxine 5'-deiodinase during lactation have not been elucidated, our present findings raise the possibility that m-Staf plays a role in the biosynthesis of type I thyroxine 5'-deiodinase, as well as other selenoproteins, by regulating expression of the tRNAsec gene in lactating mammary glands. Recently, it was reported that Staf could activate not only the X. laevis tRNAsec gene but many small nuclear RNA and small nuclear RNA-type genes transcribed by RNA polymerase II or Pol III in a X. laevis oocyte system (37). Moreover, some of these genes, such as the U2 gene, were found to contain binding sites for both Staf and Oct factor in their distal sequence element regions (37, 38), in which the two transcription factors interact to activate transcription. Because the distal sequence element region of the mouse tRNAsec gene also contains a consensus octamer binding site (23), it is of interest to examine whether such an interaction is important for the regulation of murine tRNAsec gene promoter transcription. In addition, the question of whether m-Staf can also activate transcription of small nuclear RNA genes in mammalian tissues, including the mammary gland, remains to be investigated. Previously, it was reported that human ZNF76 (39) was a human homologue of Staf (24, 37), although its biological function was not identified. The sequence of ZNF76 showed 85.1% identity (172 of 202 residues) with Staf in the zinc finger region, but its entire sequence had only 58.0% homology with Staf (298 of 514 residues). We found that m-Staf and human ZNF143, another human zinc finger protein (32), share 97.1% homology in their amino acid sequences. In view of our findings that m-Staf functions as a transcription activator of the mouse tRNAsec gene, ZNF143 may be the human homologue of m-Staf and have similar functions for the regulation of tRNAsec gene transcription in mammalian systems. Moreover, because the ZNF143 gene was mapped to chromosomal regions implicated in developmental and malignant disorders (32), it is of interest to examine the possible involvement of m-Staf in these disease states in the mouse model.
We thank Drs. Deborah M. Hinton, Karen Usdin, and Michael D. Davis for their discussion and critical reading of our manuscript.
* The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact. The nucleotide sequence(s) reported in this paper has been submitted to the GenBankTM/EMBL Data Bank with accession number(s) AF011758.
§ Present address: Molecular Biology Dept., Nippon Shinyaku Co., Ltd., 3-14-1 Sakura, Tukuba-City, Ibaraki 305, Japan.
¶ To whom correspondence should be addressed: LMCB/NIDDK/NIH, Bldg. 8, Rm. 309, Bethesda, MD 20892. Tel.: 301-496-1404; Fax: 301-402-0053.
1 The abbreviations used are: tRNAsec, selenocysteine tRNA; Pol III, RNA polymerase III; Pol II, RNA polymerase II; AE, activator element; Staf, selenocysteine tRNA gene transcription activating factor; CAT, chloramphenicol acetyltransferase; TBE, 90 mM Tris base, 90 mM boric acid, 0.5 mM EDTA, pH 8.3; MW, mouse wild type competitor; MM, mouse mutated competitor.
Copyright © 1998 by The American Society for Biochemistry and Molecular Biology, Inc. This article has been cited by other articles:
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