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J Biol Chem, Vol. 273, Issue 20, 12281-12287, May 15, 1998
Suramin Is an Active Site-directed, Reversible, and Tight-binding
Inhibitor of Protein-tyrosine Phosphatases*
Yan-Ling
Zhang ,
Yen-Fang
Keng,
Yu
Zhao,
Li
Wu, and
Zhong-Yin
Zhang§
From the Department of Molecular Pharmacology, Albert Einstein
College of Medicine, Bronx, New York 10461
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ABSTRACT |
The effect of suramin, a well known
antitrypanosomal drug and a novel experimental agent for the treatment
of several cancers, on protein-tyrosine phosphatases (PTPases) has been
examined. Suramin is a reversible and competitive PTPase inhibitor with Kis values in the low µM range,
whereas the Kis for the dual specificity
phosphatase VHR is at least 10-fold higher. Although suramin can also
inhibit the activity of the potato acid phosphatase at a slightly
higher concentration, it is 2-3 orders of magnitude less effective
against the protein Ser/Thr phosphatase 1 and the bovine intestinal
alkaline phosphatase. Suramin binds to the active site of PTPases with
a binding stoichiometry of 1:1. Furthermore, when suramin is
bound to the active site of PTPases, its fluorescence is
enhanced approximately by 10-fold. This property has allowed the
determination of the binding affinity of suramin for PTPases and
several catalytically impaired mutant PTPases by fluorescence titration
techniques. Thus, the active site Cys to Ser mutants bind suramin with
similar affinity as the wild type, while the active site Arg to Ala
mutant exhibits a 20-fold reduced affinity toward suramin.
Interestingly, the general acid deficient Asp to Ala mutant PTPases
display an enhanced affinity toward suramin, which is in accord with
their use as improved "substrate-trapping" agents. That suramin is
a high affinity PTPase inhibitor is consistent with the observation
that suramin treatment of cancer cell lines leads to an increase in
tyrosine phosphorylation of several cellular proteins. Given the
pleiotropic effects of suramin on many enzyme systems and growth
factor-receptor interactions, the exact in vivo actions of
suramin require further detailed structure-activity investigation of
suramin and its structural analogs.
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INTRODUCTION |
Suramin is a polysulfonated naphthylurea compound (see Fig.
1A) that has been widely used for the treatment of
trypanosomiasis (sleeping sickness) and onchocerciasis since the early
1920s (1). It was originally synthesized by Bayer AG in 1916 based on
the observation that trypan red and trypan blue exhibited trypanocidal activity (2, 3). Since the last decade, many new and therapeutically significant properties of this compound have been identified. For
example, suramin has been shown to prevent the infection of T
lymphocytes by human immunodeficiency virus in vitro (4). Suramin has also been shown to exert antiproliferative activities by
interfering with the binding of a number of growth factors, such as
platelet-derived growth factor, epidermal growth factor, basic
fibroblast growth factor, transforming growth factor- (5-9), and
tumor necrosis factor- (10) to their corresponding receptors. The
ability of suramin to block the activity of several growth factors that
play important role in tumor cell biology has prompted studies directed
at the use of suramin as an antineoplastic agent (3). Indeed,
subsequent investigations have shown that suramin exhibits antitumor
activity against several metastatic cancers such as renal cancer,
adrenocarcinoma, lymphoma, and prostate cancer (11, 12).
If the antitumor property of suramin is solely due to its ability to
antagonize the activity of growth factors that stimulate the intrinsic
protein-tyrosine kinase activity of the receptors, one would expect a
decrease in tyrosine phosphorylation in cancer cells upon exposure to
suramin. Unexpectedly, suramin treatment of epidermal carcinoma and
several prostate, breast, gastric, and colon cancer cell lines causes
rapid and dramatic increase in tyrosine phosphorylation of several
cellular proteins (13, 14). These observations cast doubt about the
notion that the antitumor action of suramin simply arises from
abrogation of growth factor functions and suggest the possibility that
suramin may suppress cell growth by altering directly the enzymatic
activity of protein-tyrosine kinases and protein-tyrosine phosphatases (PTPases).1 PTPases, in
conjunction with protein-tyrosine kinases, control the state of
tyrosine phosphorylation in cellular proteins, which regulate a wide
variety of biological processes such as cell growth, differentiation
and oncogenic transformation (15, 16). Although suramin is capable of
reducing the activity of Ser/Thr kinases such as protein kinase C (17,
18) and Cdc2 (19), the effect of suramin on protein-tyrosine kinase
activity is unknown. Interestingly, suramin has also been reported to
enhance the tyrosine phosphorylation of Cdc2 kinase in a nuclear
extract (19) and to inhibit the tyrosine phosphatase activity of a
preparation of immunoprecipitated plasma membrane bound CD45 in a
noncompetitive and irreversible manner (20).
Given the structural and chemical nature of suramin (Fig.
1A), we were intrigued by the observation that suramin
inhibits the CD45 phosphatase activity noncompetitively and
irreversibly. Suramin lacks a reactive functionality and possesses six
sulfonic acid groups attached directly to aromatic rings. Thus, it is
possible that suramin may bind the PTPase active site, which recognize phosphotyrosine (21), and acts as a competitive, reversible PTPase
inhibitor. This possibility together with the observation that suramin
enhances the tyrosine phosphorylation level of several proteins in
tumor cells and in Cdc2 prompted us to carry out detailed kinetic and
binding studies on homogeneous recombinant Yersinia PTPase,
the mammalian PTP1B, and several active site-directed mutant PTPases in
order to define the mode of action of suramin on PTPases. Furthermore,
we have also studied the effect of suramin on the reaction catalyzed by
the dual specificity phosphatase VHR, the protein Ser/Thr phosphatase
1 , the potato acid phosphatase, and the bovine intestinal alkaline
phosphatase.
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EXPERIMENTAL PROCEDURES |
Materials--
All chemicals were obtained from commercial
suppliers and used without further purification.
p-nitrophenyl phosphate (pNPP) was from Fluka Co.
Suramin (hexasodium
sym-bis[m-aminobenzoyl-m-amino-p-methylbenzoyl-L-naphthylamino-4,6,8-trisulfonate] carbamide, molecular weight = 1429) was a kind gift from Dr.
William Doug Figg at the National Cancer Institute, NIH. Sulfosalicylic acid (3-carboxy-4-hydroxybenzenesulfonic acid) was purchased from Fisher. Solutions were prepared using deionized and distilled water.
Acid phosphatase (potato) and alkaline phosphatase (bovine intestine)
were purchased from Sigma. Protein phosphatase 1 was a generous gift
from Dr. Ernest Lee at the University of Miami. Site-directed
mutagenesis kit was from Bio-Rad, and DNA sequencing kit from U. S.
Biochemical Corp.
Enzyme Preparation--
The catalytic domains of the
Yersinia PTPase (Yop51*/ 162, residues 163-468) (22),
PTP1B (residues 1-321) (23), and the full-length dual specificity
phosphatase VHR (24) were used in this study. The catalytic domains of
the Yersinia PTPase and PTP1B were kinetically
indistinguishable from the corresponding full-length native enzymes and
were the forms used in x-ray structural studies (25, 26). The
recombinant Yersinia PTPase, PTP1B, and VHR were expressed
in Escherichia coli and purified to homogeneity as described
previously (22-24). Protein concentration was determined from
absorbance measurement at 280 nm using an absorbance coefficient A2801 mg/ml of 0.493 for the
Yersinia PTPase, 1.24 for PTP1B, and 0.564 for VHR.
Site-directed Mutants--
Site-directed mutagenesis experiments
that converted Asp-356 in the Yersinia PTPase to an Ala
(Yersinia PTP/D356A) and Asp-181 in PTP1B to an Ala
(PTP1B/D181A) were performed using the Muta-Gene in vitro
mutagenesis kit from Bio-Rad. The oligonucleotide primers used were as
follows: D356A, 5'-ATTGGCCCGCTCAGACCGC-3', and D181A, 5'-CATGGCCTGCCTTTGGAGT-3', where the underlined base
indicates the change from the naturally occurring nucleotide. All
mutations were confirmed by DNA sequencing. The Yersinia
PTP/C403S (27), Yersinia PTP/R409A (28), and PTP1B/C215S
(23) have been described. All of the mutant PTPases were purified using
procedures similar to those employed for the wild type enzyme.
Inhibition Study--
The PTPase activity was assayed at
25 °C in a reaction mixture (0.2 ml) containing an appropriate
concentration of pNPP as substrate. The assay buffer
contained 50 mM 3,3-dimethylglutarate, pH 7.0 with
ionic strength of 0.15 M adjusted by sodium chloride (buffer A). The reaction was initiated by addition of the enzyme and
quenched after 2-3 min by addition of 1 ml of 1 N NaOH.
The nonenzymatic hydrolysis of the substrate was corrected by measuring the control without the addition of the enzyme. The amount of p-nitrophenol produced was determined from the absorbance at
405 nm using a molar extinction coefficient of 18,000 M 1 cm 1. The inhibition
constants of suramin were determined for PTP1B, the Yersinia
PTPase and VHR in the following manner. At various fixed concentration
of suramin, the initial rate at various pNPP concentrations
was measured as described (29). The data was fitted to appropriate
equations using KINETASYST (IntelliKinetics, State College, PA) to
obtain the inhibition constant.
The effects of suramin on other phosphatases were also evaluated at
25 °C using pNPP as a substrate. For potato acid
phosphatase, the reaction was conducted in 100 mM sodium
acetate, I = 0.15 M, pH 5.0 buffer. For
bovine intestinal alkaline phosphatase, the assay was performed in 100 mM Tris, 1.0 mM MgCl2,
I = 0.15 M, pH 8.0 buffer. For protein
phosphatase 1 , the assay was performed in 50 mM
3,3-dimethylglutarate, 2 mM dithiothreitol, 0.2 mM MnCl2, I = 0.15 M, pH 7.0 buffer.
Fluorescence Spectroscopy--
A Perkin-Elmer LS50B
spectrofluorimeter equipped with a thermostated cell holder was used
for suramin fluorescence measurement. The sample contained 4 µM suramin and various concentrations of PTP1B or
Yersinia PTPase in buffer A. Emission spectra from 370-480 nm were recorded with an excitation wavelength of 315 nm at
25 °C.
Time Course for Suramin Binding to the PTPases--
A sample of
2 µM suramin in buffer A was first placed in the cuvette
at 25 °C as the reference. An aliquot (50 µl) of PTPase stock was
then added and mixed with the suramin solution manually. The final
protein concentration was 10 µM. The time course of suramin binding to the PTPase was followed by the increase in fluorescence emission at 405 nm with an excitation wavelength of 315 nm.
Stoichiometry of Suramin Binding to the PTPases--
In these
experiments, the total concentration of suramin and the PTPase were
kept constant at 20 µM while the ratio of suramin to the
PTPase varied. The fluorescence of the mixture was measured as a
function of the ratio of suramin to the PTPase at 25 °C in buffer A. The highest fluorescence intensity was observed when the ratio of
suramin to protein equaled to the stoichiometry of the complex
composition.
Reversibility of Suramin Binding to the PTPases--
To assess
the reversibility of suramin binding to PTPases, the following
experiments were performed. Concentrated PTP1B or the
Yersinia PTPase (40 µM) and suramin (40 µM) was incubated together at 25 °C in buffer A for
two hours and its fluorescence was recorded after a 100-fold dilution.
A 20 µl aliquot of the diluted enzyme solution was also withdrew for
activity measurement. Then a small volume of concentrated suramin was
added to the 100-fold diluted sample so that the final concentration
for suramin and the PTPase was 4.0 and 0.4 µM,
respectively. The fluorescence of this sample was measured and compared
with the control, which was prepared by adding 4.0 µM
suramin directly to 0.4 µM fresh PTPase.
Binding Studies--
To determine the affinity of suramin to the
PTPases, the fluorescence intensity of the bound suramin was
followed as increasing amount of the PTPases was added to a solution of
suramin at 25 °C in buffer A. The excitation wavelength was 315 nm
and the fluorescence emission was monitored at 405 nm. The absorbance
of both suramin and the proteins at 315 nm and 405 nm was less than 0.1 in the concentration range used for the study. The dissociation
constant Kd was then calculated by a nonlinear
square fit of the data to Equation 1
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(Eq. 1)
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(Eq. 2)
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(Eq. 3)
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(Eq. 4)
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(Eq. 5)
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where F is the difference between the fluorescence
of titrated sample and the fluorescence of the controls. Two controls were used even though they contributed only a small amount to the total
fluorescence. One control consisted of suramin sample titrated with the
same volume of buffer and the other control consisted of the buffer
titrated with the protein stock.  represents a constant which is
the difference between the fluorescence coefficient of bound suramin
and those of free suramin and free protein under the selected
excitation and emission wavelength. V0 is
initial volume of the solution in the cuvette and V is
the volume of the titrating agent. P0 is the
protein concentration of stock solution, and L0
is the initial suramin concentration in the cuvette.
Effect of Vanadate on Suramin Binding--
One mM
vanadate was added to the mixture of suramin (2 µM) and
PTP1B (10 µM) or the Yersinia PTPase (10 µM). Suramin fluorescence of this sample was measured and
compared with the fluorescence of the sample in absence of
vanadate.
Data Presentation--
All of the experiments were reproducible
and were carried out in duplicate or triplicate. Each set of
experiments were repeated at least three times with similar results.
The details for data analysis is described above and the results are
shown as means ± standard error.
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RESULTS |
Suramin Is a Tight-binding and Competitive Inhibitor of
PTPases--
Table I summarizes the
steady state kinetic parameters for the reaction catalyzed by PTP1B,
the Yersinia PTPase, and the dual specificity
phosphatase VHR, using pNPP as a substrate at pH 7 and
25 °C. PTPases utilize an invariant Asp residue (Asp-181 in PTP1B
and Asp-356 in the Yersinia PTPase) as a general acid/base to assist phosphate monoester hydrolysis (30-33). Replacement of Asp181 in PTP1B or Asp-356 in the Yersinia PTPase by an Ala
reduced the kcat value by 300- and 900-fold,
respectively. Interestingly, substitution of Asp-181 in PTP1B or
Asp-356 in Yersinia PTPase with an Ala improved the
Km for pNPP by 30- and 10-fold, respectively. Arg-409 of the Yersinia PTPase is a key
residue in the PTPase signature motif (28). The guanidinium group in Arg-409 makes a bidentate hydrogen bond with the phosphoryl moiety of
the substrate (26) and is involved in both substrate binding and
catalysis (28). The Km value of the R409A mutant Yersinia PTPase increased by 20-fold while its
kcat was reduced by 10,000-fold.
We have evaluated the ability of suramin to inhibit the action of
PTPases and investigated the mode of inhibition by suramin at 25 °C,
pH 7.0. As shown in Fig. 2A, the effect of suramin on the
PTP1B-catalyzed pNPP hydrolysis displayed the characteristic intersecting line pattern for competitive inhibition. Similar results
were obtained for the Yersinia PTPase and the dual
specificity phosphatase VHR. Thus, suramin acts as a competitive
inhibitor for PTP1B, the Yersinia PTPase and VHR. The
competitive inhibition pattern is not surprising considering the
structural similarity of aryl sulfonate moieties in suramin with
phosphotyrosine. The Kis values for suramin with the
Yersinia PTPase and PTP1B are 1.3 and 4.0 µM,
respectively, while the Kis for suramin with VHR is
48 µM, which is more than 10 times greater than those for
the Yersinia PTPase and PTP1B (Table
II). We also tested the ability of a
simple aryl sulfonic acid derivative, sulfosalicylic acid (Fig.
1B), to inhibit PTPases. As
expected, sulfosalicylic acid inhibited the Yersinia PTPase
activity competitively (Fig. 2B), with a
Kis value of 7.5 ± 0.2 mM.

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Fig. 2.
A, effect of suramin on the
PTP1B-catalyzed hydrolysis of pNPP. The experiment was
performed at 25 °C, pH 7.0. Suramin concentrations were 0 µM ( ), 5 µM ( ), 10 µM
( ) and 20 µM ( ), respectively. B, effect
of sulfosalicylic acid on the Yersinia PTPase-catalyzed
hydrolysis of pNPP. The experiment was performed at
25 °C, pH 7.0. Sulfosalicylic acid concentrations were 0 mM ( ), 5 mM ( ), 10 mM ( ),
and 15 mM ( ), respectively.
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Effects of Suramin on Other Phosphatases--
Is the inhibition by
suramin on PTPases specific? To answer this question, we have
determined the effect of suramin on pNPP hydrolysis
catalyzed by potato acid phosphatase, bovine intestinal alkaline
phosphatase, and protein Ser/Thr phosphatase 1 . Suramin inhibited
the potato acid phosphatase-catalyzed reaction and the pattern of
inhibition was noncompetitive, with Kis = 9.3 ± 0.9 µM and Kii = 11.2 ± 0.6 µM, respectively. The pattern of inhibition for suramin
in the protein phosphatase 1 -catalyzed reaction was also
noncompetitive, but in this case, Kis = 250 ± 90 µM and Kii = 220 ± 60 µM. Interestingly, suramin acted as a competitive
inhibitor for the alkaline phosphatase-catalyzed reaction, with a
Kis value of 1.4 ± 0.1 mM.
Changes of Suramin Fluorescence upon Interaction with
PTPases--
Free suramin displayed a low fluorescence intensity when
excited at 315 nm (34). The fluorescence spectra of suramin in the
presence of increasing concentrations of PTP1B showed a pronounced increase in the emission intensity at the fluorescence maximum whereas
the maximum emission wavelength ( max = 405 nm) of
suramin did not change2 (Fig.
3). Similar observations were also made
for the Yersinia PTPase and VHR. The fluorescence
enhancement was 10-fold for PTP1B at the ligand and enzyme
concentration of 4 and 16 µM, respectively. Such a
fluorescence enhancement of suramin upon the binding of PTPase can be
used to measure the affinity of suramin for PTPases using techniques of
fluorescence titration.

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Fig. 3.
Fluorescence emission spectra of suramin in
the presence of different concentrations of PTP1B at pH 7.0 and
25 °C. Suramin concentration was 4 µM and PTP1B
concentrations were 0 (1), 2.2 (2), 4.4 (3), 8.5 (4), 12.3 (5), and 16.7 (6) µM, respectively. The excitation
wavelength was 315 nm. The inset shows fluorescence
titration of suramin by PTP1B at pH 7.0 and 25 °C. The initial
solution (1 ml) contained 4 µM suramin. The concentration
of the PTP1B stock solution was 115 µM. The fluorescence
intensity was measured at an excitation wavelength of 315 nm and an
emission wavelength of 405 nm.
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Suramin Binding to PTP1B and the Yersinia PTPase Is Rapid and
Reversible--
PTPase inhibition experiments indicate that suramin is
a high affinity inhibitor for PTP1B and the Yersinia PTPase.
In order to measure the binding constant by fluorescence titration, a
fast and reversible binding is required. The fluorescence intensity of
free suramin was low. When PTP1B was added to suramin, its fluorescence
increased rapidly and reached 90% of its maximum within 30 s
(which was the time required for the manual mixing, data not shown).
The fluorescence then increased gradually and reached the maximum in 10 min. A similar time course was observed upon suramin binding to the
Yersinia PTPase. These results indicate that suramin binding
to PTPases is a fast process.
To assess the reversibility of the binding of suramin to the PTPases,
the phosphatase activity and suramin fluorescence of the native PTPases
were compared with those of PTPases released from the suramin bound
complexes. PTP1B (40 µM) was first mixed with an equal
amount of suramin, which should result in 73% of PTP1B in the
suramin-bound form (this estimate was based on the Kis of suramin of ~4 µM for PTP1B).
When the sample was diluted by 100-fold, more than 90% of PTP1B should
be in the ligand-free form. The fluorescence spectrum of the diluted
solution containing 0.4 µM suramin and 0.4 µM PTP1B is shown in Fig. 4
(spectrum 2). Suramin (4 µM) alone had little
fluorescence (Fig. 4, spectrum 1). However, when 3.6 µM of suramin was added to the diluted PTP1B and suramin
sample (Fig. 4, spectrum 3), the fluorescence increased and
reached to the same level as the control (Fig. 4, spectrum 4), which was made of freshly mixed PTP1B (0.4 µM)
and suramin (4.0 µM). This result suggests that PTP1B
released from the PTP1B-suramin complex still has the native
conformation and is able to bind suramin again. This conclusion is
supported by measurements of the phosphatase activity of PTP1B released
from the preformed PTP1B-suramin complex. When the 100-fold diluted
PTP1B and suramin mixture was diluted 10-fold further for activity
measurement, the enzyme activity of this 1,000-fold diluted sample was
found to be exactly the same as the native PTP1B in the absence of
suramin. This indicates that PTP1B released from the suramin-bound form possess full enzymatic activity. Similar results were also obtained with the Yersinia PTPase. Thus, the interaction between
suramin and PTPases are rapid and reversible.

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Fig. 4.
Reversibility of suramin binding to PTP1B at
pH 7.0 and 25 °C. Spectrum 1, 4 µM suramin;
spectrum 2, the 100-fold diluted sample from the 40 µM suramin and 40 µM PTP1B mixture;
spectrum 3, same as spectrum 2, which contained 0.4 µM suramin and 0.4 µM PTP1B, plus an
additional 3.6 µM suramin; and spectrum 4, 4 µM suramin in the presence of 0.4 µM
freshly added PTP1B.
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Stoichiometry and Site of Interaction for Suramin
Binding--
Suramin fluorescence increases when it binds to PTPases.
To determine the stoichiometry of suramin binding to PTPases, the dependence of the fluorescence intensity of the PTPase-suramin mixture
on the ratio of suramin to the protein was measured, while keeping the
total concentration of suramin and the protein constant. Fig.
5 shows that suramin fluorescence reaches
to the maximum at a suramin to PTP1B ratio of 1:1. A stoichiometry of
1:1 was also observed for suramin binding to the Yersinia
PTPase, VHR and all of the mutants PTPases examined, including
PTP1B/D181A, PTP1B/C215S, Yersinia PTP/D356A,
Yersinia PTP/C403S and Yersinia PTP/R409A. These
results indicate that these PTPases and their mutants possess only one
binding site for suramin.

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Fig. 5.
Job-plot for the binding of suramin to PTP1B
at pH 7.0 and 25 °C. The total concentration of suramin and
PTP1B was 20 µM. The fluorescence intensity reached the
maximum at the ratio of 1:1 of suramin to PTP1B. The fluorescence
intensity was measured at an excitation wavelength of 315 nm and an
emission wavelength of 405 nm.
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Since suramin displays competitive inhibition pattern against these
PTPases, it is important to determine weather the suramin binding site
on the PTPases corresponds to the PTPase active site (i.e.
the phosphotyrosine binding site). Vanadate is a well known competitive
inhibitor of PTPases and the crystal structure of the
Yersinia PTPase complexed with vanadate reveals that
vanadate binds at the active site (35). When 1 mM of
vanadate was added to the solution containing both suramin and PTP1B
(spectrum 1 in Fig. 6), the suramin
fluorescence decreased dramatically (spectrum 2 in Fig. 6). The dose
dependence for the ability of vanadate to suppress binding of suramin
to the active site of PTP1B is shown in the inset of Fig. 6. These
results indicated that vanadate was able to displace suramin from the
active site of PTP1B. Similar observation was also made for the
Yersinia PTPase. Furthermore, an active site mutant PTPase
with decreased affinity for substrates and oxyanions also displays a
reduced binding toward suramin (see below). Collectively, all of the
data suggest that suramin, like vanadate, binds at the active site of
PTPases.

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Fig. 6.
Effect of vanadate on the binding of suramin
to PTP1B at pH 7.0 and 25 °C. Spectrum 1, suramin at a
concentration of 2 µM in the presence of 10 µM PTP1B; spectrum 2, the mixture of 2 µM suramin, 10 µM PTP1B, and 1 mM vanadate; and spectrum 3, suramin alone at
concentration of 2 µM. The inset shows the
dose dependence for the ability of vanadate to displace suramin (2 µM) from PTP1B (20 µM). The data were
fitted to the following equation by a none linear regression
analysis
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(Eq. 6)
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where vanadate and suramin are assumed to bind PTP1B
competitively, and suramin concentration is much smaller than the
enzyme concentration, F is the fluorescence of the sample
in the presence of vanadate and F0 is the
fluorescence of the sample without vanadate,
C0E is the enzyme concentration
which is fixed at 20 µM,
C0V is the vanadate concentration
during titration, KdS is the
dissociation constant for the suramin-PTP1B complex with a value of 1.4 µM (Table I), and
KdV is the dissociation constant
for the vanadate-PTP1B complex. By fitting the dose-dependence curve, a
dissociation constant (KdV) of
15 ± 1 µM was obtained for the PTP1B-vanadate
complex. This value is 30-fold higher than the Kis
(0.52 ± 0.05 µM) for vanadate determined under
steady state conditions in the PTP1B reaction. This apparent
discrepancy may result from differences in enzyme concentrations in the
two experiments or that the presence of suramin may decrease the
affinity of vanadate to PTP1B.
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Binding Constants for the Association of Suramin with PTPases
Determined by Fluorescence Titration--
We have shown that suramin
binds to the active site of PTPases rapidly and reversibly. The
PTPase-bound suramin exhibits enhanced fluorescence emission at 405 nm
when excited at 315 nm. These desirable properties have allowed us to
determine the suramin binding constants for PTP1B, the
Yersinia PTPase and several of the active site-directed
mutants PTPases with low or no catalytic activities. A typical
fluorescence titration curve for the determination of binding constant
of suramin to PTP1B is shown in the inset of Fig. 3. The solid
line was obtained by a nonlinear least square fit of the titration
data to the 1:1 binding model as described under "Experimental
Procedures." The dissociation constants for suramin binding to PTP1B,
the Yersinia PTPase, and the mutants are listed in Table II.
The Kd values determined by fluorescence titration
for PTP1B and Yersinia PTPase were 1.4 and 3 µM, respectively, which were similar to the inhibition
constants measured by steady state kinetics. The slight differences in
the results between fluorescence titration and inhibition study might
be caused by the differences in experimental conditions, such as enzyme
concentrations.
The general acid deficient mutant PTPases (PTP1B/D181A and
Yersinia PTP/D356A) and the active site Arg mutant
(Yersinia PTP/R409A) display very low phosphatase activity.
Furthermore, the active site Cys to Ser mutant PTPases (PTP1B/C215S and
Yersinia PTP/C403S) possess no measurable phosphatase
activity at all (27). Thus, direct measurements of the affinity of
suramin toward these mutant PTPases by enzyme kinetic inhibition
experiments can be difficult. The described fluorescence titration is
an ideal method to measure suramin binding constants for these low
activity PTPase mutants. Interestingly, both PTP1B/D181A and
Yersinia PTP/D356A displayed higher affinity (5-fold) than
the wild type enzyme toward suramin. Substitution of Cys-215 in PTP1B
and Cys-403 in the Yersinia PTPase by a Ser did not change
the PTPase's affinity for suramin, even though the phosphatase
activity was completely abolished. The guanidinium side chain of
Arg-409 in the Yersinia PTPase interacts with two oxygens in
the phosphoryl moiety of a substrate or an oxyanion (26). Substitution
of Arg-409 by an Ala in the Yersinia PTPase has been shown
to decrease the affinity of the Yersinia PTPase toward
pNPP (a substrate) and arsenate (an oxyanion competitive inhibitor) by 30- and 40-fold, respectively (28). Here we show that
replacement of Arg-409 by an Ala in the Yersinia PTPase also resulted in a 20-fold decrease in the phosphatase's affinity toward suramin. These results suggest that the active site Arg residue interacts with the oxygens on the sulfonate group of suramin in the
same manner as it interacts with the oxygens on the phosphoryl moiety,
and is consistent with the conclusion that suramin binds the PTPase
active site.
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DISCUSSION |
We have examined the effect of suramin on two representative
PTPases, human PTP1B and the Yersinia PTPase, both of which
have been extensively characterized biochemically and structurally (36). Included in the PTPase superfamily is a subfamily of enzymes called dual specificity phosphatases that can catalyze the hydrolysis of not only phosphotyrosine but also phosphoserine/threonine (37). The
effect of suramin on the human dual specificity phosphatase VHR, the
best characterized member of this family of phosphatases, is also
investigated. Using a variety of kinetic and fluorescence titration
techniques, we show that suramin is indeed a high affinity PTPase
inhibitor. In addition, we demonstrate that the mode of suramin
inhibition is competitive and that the binding of suramin to the
PTPases and VHR is rapid and reversible. Finally, we conclude that the
binding stoichiometry of suramin to PTPases is 1:1 and suramin binds directly to the active site of the PTPases and VHR. These
results are in direct contrast to a previous report that suramin
inhibits the phosphatase activity of the receptor-like PTPase CD45
noncompetitively and irreversibly (20). We do not know the source for
this discrepancy. We note that, in the early work, an
immunoprecipitated plasma membrane-bound CD45 preparation was used,
while in our experiments, homogeneous recombinant PTPases were
employed.
Although the amino acid sequence of the Yersinia PTPase is
only ~20% identical to PTP1B, it is clear that their structures share a common secondary structural scaffold, with close similarity in
tertiary structure (25, 26). In addition, the majority of the residues
conserved among PTPases are located in and around the
phosphotyrosine-binding site. Thus it is not surprising that PTP1B and
the Yersinia PTPase bind suramin with similar affinity. The
dual specificity phosphatases share little sequence identity with the
PTPases, except in the region of the active site phosphate binding
loop. The three-dimensional structure of the dual specificity phosphatase VHR reveals a general fold that occurs in the PTPases, which retains many of the secondary and tertiary structural elements characteristic of PTPases (38). It appears that the dual specificity phosphatases and the PTPases also utilize a common chemical mechanism for phosphate monoester hydrolysis (36). Interestingly, the affinity of
VHR for suramin is 10-40-fold lower than those of the PTPases.
To answer the question whether suramin displays a special affinity for
PTPases, we also examined the ability of suramin to inhibit
pNPP hydrolysis catalyzed by the nonspecific acid and alkaline phosphatases as well as protein phosphatase 1 . At the pH
optima for activity measurement, suramin inhibits the potato acid
phosphatase-catalyzed reaction noncompetitively, with dissociation constants severalfold higher than those of the PTPases, whereas suramin
is not an effective inhibitor for protein phosphatase 1 and alkaline
phosphatase, with dissociation constants 2 and 3 orders of magnitude
higher than those of the PTPases. Thus it does not appear that suramin
inhibit phosphatases nondiscriminately.
We have also established that sulfosalicylic acid is a competitive
inhibitor for the Yersinia PTPase. However, the affinity of
sulfosalicylic acid for the Yersinia PTPase is 5,700-fold
lower than that of suramin. This implies that structural features in addition to the aryl sulfonate motif in suramin are required for high
affinity binding. It is known that the phosphotyrosine binding site
(the active site) of PTP1B possesses significant plasticity so that
substituted naphthalene derivatives containing a
difluoromethylenephosphonyl group can also be accommodated (39). Thus,
the polysubstituted sulfonyl naphthalene moiety may be responsible for
the enhanced affinity of suramin for PTPases. It is possible that the
additional polysubstituted sulfonyl naphthalene moiety and/or other
functionalities in suramin are also important for the high affinity
binding.
When suramin is bound to the active site of PTPases, its fluorescence
is enhanced approximately 10-fold. This property makes suramin a
valuable tool to study the ligand binding reaction for the
catalytically impaired PTPase mutants. The active site Cys residue in
PTPases acts as a nucleophile to attack the phosphorous atom on the
substrate (40, 41). Although replacing the Cys residue with a Ser
residue abolishes the PTPase activity (27), the mutant protein can
still bind substrates, i.e. Tyr(P)-containing peptides/proteins (42-44). Consistent with these observations, our
work shows that PTP1B/C215S and Yersinia PTP/C403S retain similar affinity for suramin as the wild type enzymes. Elimination of
the guanidinium side chain of Arg-409 in the Yersinia
PTPase, a residue important for the binding of the phosphate group in a
substrate, reduces the affinity of the PTPase for suramin by 20-fold,
which is consistent with the conclusion that suramin binds to the
PTPase active site. When the invariant catalytic Asp residue is changed
to an Ala, the phosphatase activity of the general acid/base-deficient
PTPases is reduced dramatically. Interestingly, the affinity of
PTP1B/D181A and Yersinia PTP/D356A for substrate and suramin
increases by 5-30-fold. This is consistent with the observation that
the general acid-deficient mutant PTPase is a better
"substrate-trapping" reagent than is the active site Cys to Ser
mutant for the identification of physiological PTPase substrates
in vivo (45).
Suramin is being evaluated in phase II and III clinical trials for the
treatment of prostate cancer and other solid tumors. It is believed
that the beneficial effects of suramin treatment derive from its
ability to block the activity of a number of growth factors. The
concentration of suramin required for maximal effect was within
clinically achievable and tolerable plasma suramin levels (300 µg/ml)
(12). This concentration (200 µM) of suramin is 2 orders
of magnitude higher than that required to shut down the in
vitro activity of PTPases, which play important roles in regulating signal transduction processes initiated by growth factors. This large difference between the therapeutically effective serum suramin concentration and the concentration required to inhibit PTPases
in vitro may not be too surprising for the following
reasons. It is known that suramin is highly bound to plasma proteins
such as albumin (46, 47), which may reduce the effective free suramin concentration in circulation. Furthermore, because of its charge, suramin is membrane impermeable and has to be actively transported into
cells (12). Thus, the concentration of suramin inside the cell may well
be much lower than the therapeutic suramin concentration in the serum.
It is possible that the increase in tyrosine phosphorylation in
cellular proteins and some of the beneficial effects by suramin treatment may come from the inhibition of PTPases.
In addition to the growth factors and PTPases, suramin also exerts
pleiotropic effects on a variety of enzyme systems. For example, within
the concentration range between 1 and 100 µM, suramin can
inhibit the activity of protein kinase C (17, 18) Cdc2 (19),
phosphatidylinositol kinase and diacylglycerol kinase (48), DNA and RNA
polymerase (49, 50), reverse transcriptase (51), DNA topoisomerase
(52), steroid 5 -reductase (53), ATPase (54), and neutrophil serine
proteinases (34). Clearly, a detailed understanding of the effects of
suramin in vivo and which of these effects are important for
the antitumor activity requires further systematic structure-activity
studies of suramin and its structural analogs.
 |
FOOTNOTES |
*
This work was supported by a Pilot Research Project Award
from the Howard Hughes Medical Institute-Research Resources Program for
Medical Schools and a National Institutes of Health Grant CA69202 (to
Z.-Y. Z.).The costs of publication of this
article were defrayed in part by the
payment of page charges. The article must therefore be hereby marked
"advertisement" in
accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
Recipient of a Martin Foundation Fellowship.
§
Sinsheimer Scholar. To whom correspondence should be addressed:
Dept. of Molecular Pharmacology, Albert Einstein College of Medicine,
1300 Morris Park Ave., Bronx, NY 10461. Tel.: 718-430-4288; Fax:
718-430-8922; E-mail: zyzhang{at}aecom.yu.edu.
1
The abbreviations used are: PTPase,
protein-tyrosine phosphatases; pNPP,
p-nitrophenyl phosphate.
2
The maximum fluorescence emission wavelength of
suramin did not change during titration with PTP1B. Similar observation
has been made when neutrophil serine proteinases were added to a
suramin solution (34). The slight increase in fluorescence at 380 nm in
the spectra at high PTP1B concentrations was due to the small intrinsic
fluorescence of PTP1B, which peaks at 340 nm (excitation wavelength 315 nm). In the fluorescence titration experiments, the contribution from
the protein to the total fluorescence was corrected by subtraction (see
"Experimental Procedures").
 |
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