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J Biol Chem, Vol. 273, Issue 21, 13015-13021, May 22, 1998
The Human Poly(A)-binding Protein 1 Shuttles between the Nucleus
and the Cytoplasm*
Elena
Afonina ,
Roland
Stauber §, and
George N.
Pavlakis¶
From the Human Retrovirus Section, ABL-Basic Research Program,
NCI-Frederick Cancer Research and Development Center,
Frederick, Maryland 21702-1201
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ABSTRACT |
We have studied the intracellular localization of
poly(A)-binding protein 1 (PABP1) by indirect immunofluorescence as
well as by tagging with the green fluorescent protein (GFP) in living cells. We show that PABP1 is able to enter the nucleus. Accumulation of
PABP1 in the nuclei was observed upon transcription inhibition, suggesting that active transcription is required for PABP1 export. The
nuclear import of PABP1 is an energy-dependent process
since PABP1 fails to enter the nucleus upon ATP depletion and at low temperature. Transfection of PABP1 or PABP1-GFP resulted in
heterogeneity of intracellular distribution of the protein. In the low
expressing cells, PABP1 was localized in the cytoplasm, whereas in the
high expressors, we observed accumulation of the protein in the
nucleus. Nuclear PABP1 observed either after overexpression or after
transcription inhibition was found in speckles and colocalized with
splicing factor SC35. The ability of PABP1 to shuttle between nucleus
and cytoplasm was also shown by heterokaryon formation upon cell
fusion. Deletion mutagenesis showed that the minimal part of PABP1
retaining the ability to shuttle consists of the first two RNA-binding
domains. This mutant interacted with poly(A) RNA with high affinity and accumulated in the nucleus. Deletion mutants exhibiting reduced RNA
binding affinity did not accumulate in the nucleus. PABP1 has been
proposed to participate at various steps of mRNA utilization. Our
results suggest involvement of PABP1 in nuclear events associated with
the formation and transport of mRNP to the cytoplasm and identify a new
trafficking pattern for RNA-binding proteins.
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INTRODUCTION |
Eukaryotic mRNAs are organized in ribonucleoprotein complexes
(1, 2). One predominant protein of these complexes is the
poly(A)-binding protein 1 (PABP1)1, which associates
with the 3' poly(A) tail of mRNA (3-6). PABP1 is an essential
protein in yeast (7) and is highly conserved among eukaryotic organisms
(3, 4). PABP1 is clearly a multifunctional protein, proposed to
participate in 3' end formation of mRNA, translation initiation,
mRNA stabilization, protection of poly(A) from nuclease activity,
mRNA deadenylation, inhibition of mRNA decapping, and mRNP
maturation (8, 9). PABP1 may be a key factor in mediating regulation of
mRNA turnover through the inhibition of mRNA decapping by the
poly(A) tail or by influencing the rate of deadenylation (10-13).
Several lines of evidence argue that PABP1 plays a role in stimulating
translation initiation (14-16), suggesting that the interaction of
this protein with the 3' poly(A) sequence can influence events at the
5' end of mRNA. PABP1 availability for interaction with processed
mRNA is very important. Recent studies have shown that PABP1 is
involved in the processing of 3' end of premessenger RNA (9). These
results imply that interaction of PABP1 with poly(A) tail occurs in the
nucleus. Mature mRNA is exported from the nucleus accompanied by
several hnRNP proteins (17-19). Presence of PABP1 on the poly(A) tails
of exported mRNA could be advantageous for translation
initiation.
Recently, we have shown that PABP1 can also bind internal mRNA
sites and that binding to the inhibitory/instability sequences (INS1)
of human immunodeficiency virus type 1 (HIV-1) may affect HIV-1
mRNA stability and utilization (20). Since our previous experiments
suggested that the presence of INS1 affects not only expression but
also the export of gag mRNA (21, 22), we examined the possibility
that interaction with PABP1 already occurs in the nucleus. PABP1 is
thought to be a cytoplasmic protein and has been detected in the
cytoplasm by immunofluorescence (23).
In this report, we show that PABP1 is not a purely cytoplasmic protein,
but it is also found in the nucleus. We studied the localization of
PABP1 by using both indirect immunofluorescence and tagging of the
PABP1 by fusion to the green fluorescent protein (GFP). We present data
demonstrating that PABP1 shuttles between the nucleus and cytoplasm.
The RNA-binding ability of PABP1 is important for nuclear retention.
These results suggest an expanded role for PABP1 in nucleocytoplasmic
trafficking and utilization of mRNP particles.
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MATERIALS AND METHODS |
Recombinant DNA--
Plasmid pGEM1 containing the coding
sequence of human PABP1 was obtained from T. Grange (Institut Jacques
Monod, France) (3). The PABP1 coding sequence was inserted into the
BssHII-BamHI sites of pB37R, replacing the
gag gene of HIV-1 (24). The resulting vector, pPABP1,
contains the HIV-1 long terminal repeat (LTR) promoter. To generate a
PABP1-GFP fusion protein, the coding sequence of PABP1 was inserted in
the NheI site of plasmid pF25, which contains the mutant
GFPsg25 gene linked to the immediate early cytomegalovirus (CMV)
promoter (25). Deletion mutants of PABP1-GFP were generated by PCR. The
corresponding primers also contained NheI restriction site,
and resulting PCR fragments were inserted into pF25. Deletion mutants
shown in Fig. 2 contained the following PABP1 coding sequences: M1, nt
1-255; M1", nt 1-450; M12, nt 1-555; M2, nt 270-555; M1234, nt
1-1125; M4c, nt 835-1499; and c, nt 1128-1499.
Cells and Transfections--
HLtat is a HeLa-derived cell line
that constitutively produces Tat protein (26). 293 is an
adenovirus-transformed human embryonic kidney cell line (27). Cells
were transfected by the calcium phosphate coprecipitation technique as
described previously (28, 29). NIH 3T3 cells were transfected by
LipofectAMINE (Life Technologies, Inc.).
A cell line constitutively expressing PABP1-GFP was generated by
transfection of the PABP1-GFP-expressing plasmid into HeLa cells,
followed by selection of G418-resistant clones. After a week of
selection, cells expressing PABP1-GFP were sorted by FACS and
maintained in G418-containing medium for 2 weeks, followed by a
single-cell sorting procedure to generate clonal cell lines. Of three
clones examined in detail, we report results obtained with clone F4.2.
Analysis of protein expression in two clonal cell lines by Western blot
using anti-PABP1 antiserum 39473 revealed that the level of expression
of PABP1-GFP was less than 30% of the endogenous PABP1 in this clonal
cell population. Therefore, the majority of the cells contain a small
fraction of PABP1-GFP compared with the endogenous PABP1 protein.
Protein Analysis--
Indirect immunofluorescence analysis was
carried out as described previously (29). Briefly, cells were seeded
into coated 50-mm glass bottom dishes (MatTek) and transfected 24 h later with the indicated plasmids. One day later, cells were fixed
with 3.7% formaldehyde in PBS at room temperature for 15 min followed by incubation with 10% Nonidet P-40 in PBS for 15 min. Staining was
performed by incubation with anti-PABP1 antiserum 39473 (1:50 dilution
in PBS) for 40 min at 37 °C (20). The cells were then washed three
times with PBS and incubated with FITC-conjugated anti-rabbit antibody
(KRL, Rockville, MD) (1:20 dilution in PBS) for 40 min at 37 °C. For
colocalization experiments, cells were incubated in addition to the
anti-PABP1 antiserum with a mouse monoclonal anti-SC35 antibody (a gift
from F. Maldarelli National Institutes of Health) followed by
incubation with rhodamine red (RDR)-conjugated anti-mouse antibody
(KRL). The cells were examined by an inverted fluorescence microscope
(Zeiss Axiovert 135). GFP signals were obtained with an
FITC-fluorescence filter set (Zeiss 09, excitation 450-490 nm, beam
splitter 510 nm, emission filter >520 nm). 12-bit black and white
images were captured using a digital CCD camera (Photometrics, AZ).
Image analysis and presentation were performed using IPLab Spectrum
software (Scanalytics, Vienna, VA). The total cellular GFP signal was
measured by calculating the integrated pixel intensity in the imaged
cell multiplied by the area of the cell. Nuclear signal was similarly
obtained by measuring the pixel intensity in the nucleus. The
cytoplasmic signal was calculated by subtracting the nuclear signal
from the total cellular signal. All pixel values were measured below
the saturation limits of the CCD camera. Analysis of PABP1 by
immunoblotting was performed as described previously (20).
Cell Fusion and Heterokaryon Formation--
HeLa cells
transfected with pF25PABP1-GFP were seeded 24 h after transfection
with a 10-fold excess of untransfected HeLa cells. After overnight
incubation, the cells were treated with 100 µg/ml of cycloheximide
for 1 h, and then treated with pre-warmed 4% polyethylene glycol
for 3 min (30). The cells were washed with medium containing 100 µg/ml of cycloheximide and incubated for 1-5 h. Cells were observed
under phase contrast and fluorescent illumination, and fusions
involving one donor cell and surrounding acceptor cells were
selected for analysis over a 5-h period. Serial CCD camera images were
analyzed using IPlab Spectrum software.
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RESULTS |
PABP1 Is Found in the Nucleus After Transcription
Inhibition--
Although PABP1 is localized in the cytoplasm by
immunofluorescence (Fig. 1A,
panel 1) (23), several experiments have suggested a nuclear
role for this protein (4, 9, 20). To examine a possible nuclear
localization of PABP1, we tested whether localization of PABP1 depends
on ongoing transcription since PABP1 is a mRNA-binding protein. For
this, we treated cells with transcription inhibitor, 5,6-dichlororibofuranosylbenzimidazole (DRB) known to cause early termination of pre-mRNA transcription (Fig. 1A) (31).
Treatment with DRB (25 µg/ml) for 6 h, resulted in accumulation
of PABP1 in the nucleus, mostly in speckles, as shown by
immunofluorescence (Fig. 1A, panel 2). In
addition, we constructed a HeLa-derived stable cell line expressing
PABP1-GFP (Fig. 2) as described under "Materials and Methods." In the great majority of these cells, PABP1-GFP was localized in the cytoplasm (Fig. 1B,
panel 1), while in few cells we observed nuclear speckles
containing PABP1-GFP. After 4 h of incubation of this clonal cell
line with either DRB (25 µg/ml) or with actinomycin D (0.5 µg/ml or
5 µg/ml), PABP1-GFP was observed in nuclear speckles (Fig.
1B, panels 2, 3, and 4). The DRB
effect was reversible; after removing DRB and incubating the cells in
fresh DRB-free medium, all PABP1-GFP was relocated to the cytoplasm
(Fig. 1B, panel 5).

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Fig. 1.
Inhibition of transcription results in
nuclear accumulation of PABP1. A, immunofluorescence
analysis. Hela cells were fixed and stained for indirect
immunofluorescence using anti-PABP1 antiserum 39473 as described under
"Materials and Methods." 1, untreated cells;
2, cells treated with 25 µg/ml of DRB for 6 h at
37 °C. B, CCD camera images of live HeLa cells (clone
F4.2) stably expressing PABP1-GFP, treated for 4 h at 37 °C as
follows: 1, no drug; 2, 0.5 µg/ml of
actinomycin D; 3, 5 µg/ml of actinomycin D; 4,
25 µg/ml of DRB; 5, cells treated with 25 µg/ml of DRB
for 4 h and then incubated in drug-free medium overnight;
6, cells treated with 100 µg/ml of cycloheximide for
4 h; 7, cells treated with 25 µg/ml of DRB, 4 h
at 4 °C; 8, cells treated with 5 µg/ml of actinomycin
D, 4 h at 4 °C; 9, cells pretreated with
glucose-free DMEM supplemented with 10 mM 2-deoxyglucose
and 10 mM sodium azide for 1 h at 37 °C and then
incubated with 25 µg/ml of DRB, 4 h at 37 °C.
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Fig. 2.
Expression vectors for PABP1 and
mutants. Plasmids expressing PABP1, PABP1-GFP, and mutants of
PABP1 fused to GFP coding sequence are shown, with arrows
corresponding to the PABP1 RNA-binding domains (RBDs) and
gray areas to the C-terminal part of the protein.
LTR, HIV-1 LTR promoter; CMV, cytomegalovirus
early promoter; poly(A), polyadenylation signal.
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To test whether localization of PABP1 was dependent on ongoing
translation, we examined the effect of the protein synthesis inhibitor
cycloheximide on the subcellular distribution of PABP1 or PABP1-GFP in
living cells. We did not observe any significant changes in the
localization upon cycloheximide (100 µg/ml) treatment alone (Fig.
1B, panel 6). To demonstrate complete inhibition
of protein synthesis by cycloxehimide under the conditions used in our
experiments, we measured incorporation of radiolabeled amino acids into
trichloroacetic acid (TCA)-insoluble protein fraction from untreated
and cycloheximide-treated cells. The presence of cycloheximide
inhibited protein synthesis by 97%.
These results suggested that PABP1 is able to enter the nucleus, and
its exit to the cytoplasm is dependent on active RNA transcription.
Given the size of the protein, we thought it is unlikely that PABP1
passively diffuses into the nucleus. To investigate whether the nuclear
uptake of PABP1 is an energy-dependent process, we treated
cells with actinomycin D or with DRB at 4 °C. PABP1-GFP failed to
accumulate in the nucleus under these conditions (Fig. 1B,
panels 7 and 8). Import of PABP1 was also
abolished in the cells upon inhibition of transcription in the presence
of 2-deoxyglucose (10 mM) and sodium azide (10 mM) that deplete ATP pools (32-34) (Fig. 1B,
panel 9). Administration of sodium azide alone did not completely prevent the accumulation of the PABP1 in the nucleus (data
not shown). We interpret the results of these experiments to suggest
that the import of PABP1 to the nucleus is an energy-requiring process.
PABP1 Localizes in Both the Cytoplasm and Nucleus upon
Transfection--
We studied the localization of PABP1 in HeLa cells
upon transient transfection of plasmids expressing a full-length PABP1 cDNA (pPABP1, Fig. 2). Indirect immunofluorescence showed that PABP1 accumulated in the nucleus of cells producing high levels of the
protein, whereas PABP1 showed cytoplasmic localization in cells
expressing low levels of protein or in non-transfected cells (Fig.
3, A and B). We
also introduced GFP-tagged PABP1 protein into the cells by transient
transfections of pF25PABP1-GFP, a plasmid producing a PABP1-GFP fusion
protein (Fig. 2). Similarly to transfected PABP1, PABP1-GFP was found
to have a variable distribution in transfected cells. In low expressing
cells, PABP1-GFP was found in the cytoplasm (Fig. 3D),
whereas high expressing cells displayed nuclear accumulation of the
fusion protein (Fig. 3C). Similar results were obtained upon
transfection of human kidney 293 cells and mouse NIH-3T3 cells (data
not shown). Comparison of the levels of expression of PABP1-GFP in
cells containing nuclear/cytoplasmic versus cytoplasmic only
PABP1-GFP was performed by quantitation of GFP fluorescence. Series of
images of transfected cells were taken at identical settings and total
GFP signal was measured as described under "Materials and Methods,"
below the saturation limits of the CCD camera. The fluorescence levels
of cells containing PABP1-GFP only in the cytoplasm was on average
3-5-fold lower than that of cells containing PABP1-GFP both in the
cytoplasm and nucleus.

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Fig. 3.
Nuclear accumulation of PABP1 or PABP1-GFP
upon transient transfection. HLtat cells were transiently
transfected with 3 µg of the PABP1-expressing plasmid pPABP1
(A and B) or with the PABP1-GFP-expressing
plasmid pF25PABP1-GFP (C and D). Detection of
PABP1 in panels A and B was by
immunofluorescence as in Fig. 1A above, whereas detection of
PABP1-GFP in live cells was by excitation using blue light. PABP1
(A) or PABP1-GFP (C) accumulated in the nucleus
of high-expressing cells. Cells expressing low levels of PABP1
(B) or PABP1-GFP (D) showed cytoplasmic
localization of the protein. Representative fields are shown. Exposure
times for images (B) and (D) were longer compared
with (A) and (C).
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In most cells containing nuclear PABP1, the protein accumulated in
nuclear speckles. This was observed both in live cells expressing
PABP1-GFP and in fixed cells expressing untagged PABP1 (Fig.
4, A and D).
Because this localization was reminiscent of the nuclear speckles
containing splicing factors, the cells were immunostained with
antiserum against the splicing factor SC35 to further characterize the
intranuclear location of PABP1 (Fig. 4, C and F).
Combining the signal from PABP1-GFP with the corresponding immunostaining image of SC35 or double immunostaining of cells transfected with PABP1 revealed significant colocalization of PABP1 and
SC35 nuclear speckles (Fig. 4, B and E).

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Fig. 4.
Colocalization of PABP1 or PABP1-GFP and SC35
in nuclear speckles. HLtat cells were transiently transfected with
1 µg of a PABP1-expressing plasmid (top panels) or
PABP1-GFP-expressing plasmid (bottom panels). At 24-h
post-transfection, cells were fixed, immunostained, and examined by
fluorescent microscopy as described under "Materials and Methods."
Cells at the top panel were subjected to double
immunostaining with rabbit antiserum against PABP1 and FITC-conjugated
anti-rabbit antibody together with mouse anti-SC35 monoclonal antibody
and RDR-conjugated anti-mouse antibody. Cells at the bottom
panel were stained with mouse anti-SC35 monoclonal antibody and
RDR-conjugated anti-mouse antibody. PABP1-GFP was detected directly
using the FITC filter set. A, PABP1 localization;
C, SC35 localization; D, PABP1-GFP detection;
F, SC35 localization; B and E,
combined images for FITC and RDR fluorescence show colocalization of
PABP1 and SC35.
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These results suggested that PABP1 may traffic between the nucleus and
the cytoplasm. Another way to study nuclear-cytoplasmic transport is to
utilize heterokaryon assay upon cell fusion similar to previously
published procedures (35, 36). Heterokaryon formation temporarily
creates a nonequilibrium situation, allowing real-time study of protein
redistribution among different intracellular compartments. This assay
allows simultaneous monitoring of the exit of the protein of interest
from the donor nucleus to the cytoplasm and the import into the
surrounding acceptor nuclei. HeLa cells containing PABP1-GFP in the
nucleus were fused to excess of untransfected cells. The localization
of PABP1-GFP was followed in living cells after cell fusion.
Cycloheximide (100 µg/ml) was added to prevent de novo
protein synthesis. Fig. 5A
shows the movement of PABP1-GFP over a period of 4.5 h in two
independent heterokaryons initially containing one bright nucleus and
either one or two empty nuclei. We were able to detect PABP1-GFP in the acceptor (untransfected) nuclei within 1-2 h after fusion. We also
observed a decrease in the intensity of fluorescence in the donor
nucleus in parallel to the increase in the acceptor nuclei (Fig.
5A, compare donor nuclei of both fusions at 1- and 4.5-h time points). Quantitation of the fluorescence signal revealed that the
ratio of the total nuclear signal to the cytoplasmic signal for the
whole heterokaryon was not changed over this period, whereas the signal
within the donor nucleus decreased and that of the acceptor nuclei
increased (Fig. 5B). Therefore, PABP1-GFP migrated out of
the donor nucleus and was imported into the acceptor nuclei.

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Fig. 5.
Shuttling of PABP1 after cell fusion.
A, redistribution of PABP1-GFP from donor nuclei into
acceptor nuclei 1-4.5 h after PEG-mediated fusion. HLtat cells were
transfected with 3 µg of PABP1-GFP-expressing plasmid.
PABP1-GFP-expressing cells were cocultivated with excess of
untransfected HLtat cells, and cell fusion was performed the next day
as described under "Materials and Methods." Two independent
heterokaryons in the same field are shown. B, quantitation
of nuclear/cytoplasmic signal ratios for PABP1-GFP within the
heterokaryon in panel A, over time. Circles,
total nuclear/cytoplasmic signal; triangles, donor
nucleus/cytoplasmic signal; squares, acceptor
nucleus/cytoplasmic signal ratios. GFP fluorescence was quantified from
the serial CCD camera images as described under "Materials and
Methods."
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The Two N-terminal RNA-binding Domains of PABP1 Are Sufficient for
Nuclear Localization--
PABP1 contains four RNA-binding domains
(RBDs) and a proline-rich C-terminal domain (Fig. 2). To investigate
the part of PABP1 responsible for nuclear accumulation, we generated
deletion mutants coupled to GFP and introduced them into HeLa cells by
transient transfection (Fig. 2). Interestingly, deletion mutants
containing the two N-terminal RBDs (M12) or all four RBDs (M1234) of
PABP1 showed predominantly nuclear localization (Fig.
6, A and B). In contrast to PABP1-GFP, we did not observe any significant differences in the intracellular distribution of these mutant proteins associated with different levels of expression in individual transfected cells.

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Fig. 6.
Cellular localization of PABP1-GFP
mutants. HLtat cells were transfected with 1-3 µg of indicated
plasmids. At 24 h post-transfection, fluorescent microscopy was
performed. Representative fields of live cells captured by CCD camera
are shown.
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Mutants containing single RBDs (M1 or M2; Fig. 6, C and
E, respectively) or only the C-terminal part of PABP1 (Fig.
6G) were distributed throughout the entire cell, and their
localization was indistinguishable from that of GFP alone (Fig.
6H). Mutants containing the first RBD and part of the second
domain (M1", Fig. 6D) or the fourth RBD and the C-terminal
part of PABP1 (M4c, Fig. 6F) were also distributed
throughout the entire cell. This distribution of GFP hybrids containing
small fragments of PABP1 may reflect passive diffusion among cellular
compartments. We conclude that mutant M12 contains the minimal part of
PABP1 necessary and sufficient for nuclear localization.
We next investigated the ability of the mutant polypeptides to bind
poly(A) in vitro. Cell lysates from cells transfected with
DNA expressing the different mutants were incubated with poly(A)-Sepharose, and the presence of bound PABP1 or mutant
polypeptides was examined by immunoblotting after extensive washing
with 1 M KCl (Fig. 7). Both
PABP1 and PABP1-GFP bound tightly to poly(A), and were retained on the
poly(A)-Sepharose matrix after this wash step. The mutants M12 and
M1234 also bound efficiently to poly(A). A significant amount of each
polypeptide was retained on the poly(A)-Sepharose beads after the wash
step with 1 M KCl (Fig. 7, lanes 2, 6, 8, and
14). We did not observe any significant poly(A) binding
activity with either M1, c (the C-terminal fragment of PABP1), or M4c
(Fig. 7, lanes 4, 10, and 12). The decrease of
the intensity of the retained band corresponding to these mutant
polypeptides could not be attributed to the degradation of the protein
during the experiment since we were able to detect the unbound mutant
polypeptides in the flow-through fractions (data not shown). These
results are in agreement with the results of Burd et al.
(37) showing that a contiguous two RBD combination is required for
efficient RNA binding. As shown above, none of the single-domain
polypeptides were able to be retained in the nucleus, suggesting a
correlation between nuclear accumulation and the ability of the
polypeptides to bind tightly to poly(A) RNA.

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Fig. 7.
Comparison of poly(A) binding activity of the
PABP1, PABP1-GFP, and mutants. Binding of PABP1 and mutants to
poly(A) in vitro measured after immunoblotting of the
proteins captured on poly(A) beads. HLtat cells were transfected with
the indicated plasmids expressing PABP1 and mutants. A 50-µl aliquot
of cell extract from each transfection was loaded in lanes 1, 3, 5, 7, 9, 11, and 13. A 200-µl aliquot of cell extract
was bound to poly(A)-Sepharose beads, washed with 1 M KCl,
and the bound proteins were boiled in loading buffer containing SDS and
loaded on lanes 2, 4, 6, 8, 10, 12, and 14,
respectively.
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DISCUSSION |
In this study, we present evidence that the cytoplasmic
localization of PABP1 represents a dynamic equilibrium of the protein, which has the ability to shuttle between the nucleus and cytoplasm. Different types of evidence support this conclusion. First, inhibition of transcription results in PABP1 accumulation in nuclear speckles. Removal of the inhibitor (DRB) restores the cytoplasmic localization of
PABP1. Second, overexpression of the protein results also in nuclear
speckle accumulation. We have performed analysis of either PABP1 or
PABP1-GFP localization and trafficking. In all cases, the results were
in agreement, indicating that GFP tagging did not affect PABP1
function. We show that the import of PABP1 is an active process, since
PABP1 fails to enter the nuclei upon ATP depletion or at low
temperature. We observed that two deletion mutants of PABP1 containing
two or four RBDs have retained the ability to enter the nucleus. In
agreement with our data, a truncated form of PABP1 encompassing only
four RBDs, which is very similar to our M1234 mutant, was previously
found in the nucleus (4). These mutants, M12 and M1234, readily
interacted with poly(A) RNA with an affinity comparable with that of
the full-length protein. Deletion mutants exhibiting reduced RNA
binding activity did not show any preference in localization.
Therefore, the minimal putative nuclear localization signal of PABP1 is
composed of two RBDs and was not associated with any short peptide
sequence. RNA binding and nuclear import may be distinct, and RNA
binding may be the cause for nuclear retention. Such mechanism has been
proposed for the Rev protein of HIV-1, based on the demonstration of
nuclear import but not nuclear retention of Rev mutants that lack RNA binding.2 Previously, it was
reported that PABP1 is localized exclusively to the cytoplasm, even
upon overexpression of hemagglutinin-tagged PABP1 (17, 23). We do not
know the reason for this discrepancy although it might reflect
differences in the levels of expression, the type of cells used for
transfection, or accessibility of the hemagglutinin tag to the
antibodies. Similar to our results, Sachs (4) et al. have
suggested the presence of nuclear PABP1 in yeast.
Nuclear PABP1 was concentrated in speckles that also contained splicing
factor SC35. Speckles containing the splicing factors SC35, Sm, and
U2AF were initially thought to be a factor storage compartment
(38-42). Others have suggested a more dynamic functional role for
nuclear speckles, due to their marked reorganization upon cell
differentiation or inhibition of transcription (43-48). Huang and
Spector (43) reported colocalization of poly(A)-containing RNA and SC35
speckles and reorganization of such structures upon inhibition of
transcription, suggesting an active role in the RNA processing itself.
Therefore, we suggest that the binding of PABP1 to poly(A)-containing
RNA occurs in the nuclear speckles during or shortly after
transcription.
Since PABP1 accumulated in the nucleus upon overexpression, we
hypothesize that the export pathway of the protein is saturable. To
explore the possible mechanism of PABP1 export, we investigated its
dependence on the inhibition of transcription and translation. Transcription inhibition resulted in accumulation of PABP1 in the
nuclei of the cells expressing low levels of PABP1. Inhibition of
translation by cycloheximide did not affect the intracellular distribution of PABP1. The requirement for ongoing transcription for
PABP1 export suggests that PABP1 utilizes its RNA binding activity to
exit the nucleus as RNP particles. mRNA export has been suggested
to be mediated by hnRNP proteins. Of these, the best characterized
candidate is hnRNP A1, which is constantly shuttling between nucleus
and cytoplasm (17-19). Future experiments are required to investigate
whether PABP1 and hnRNP proteins utilize the same export pathway.
The trafficking pattern identified for PABP1 may be shared with other
proteins. We have recently shown that the product of the von
Hippel-Lindau tumor suppressor gene (pVHL) (49-52) has trafficking properties similar to PABP1, i.e. pVHL shuttles
between the nucleus and cytoplasm and, similar to PABP1, inhibition of transcription resulted in nuclear
accumulation.3 The similarity
between the intracellular localization changes and trafficking pattern
for PABP1 and pVHL suggests similar trafficking mechanisms for the two
proteins.
The suggestion that PABP1 has the ability to interact with
poly(A)-containing RNA in the nucleus and that it exits the nucleus as
a complex with newly synthesized poly(A)-containing RNA raises the
possibility that PABP1 binding to the poly(A) tail in the nucleus is
important for mRNA processing, transport, and utilization. Recently, PABP1 was identified as a component of CF I complex responsible for premessenger mRNA 3'-end formation (9). Thus, PABP1
is involved in early steps of regulation of mRNA expression that
occur in the nucleus. It was hypothesized that PABP1 binds to
progressively growing poly(A) tail and that the amount of bound PABP1
regulates poly(A)-polymerase activity. The yeast PABP1 homologue Pab1p
was also reported to interact with the cap-binding complex via the
eIF-4G subunit (16). It is tempting to speculate that mRNA is
transported out of the nucleus as an RNP complex competent for
translation initiation.
We have previously shown (20) that PABP1 binds the INS1 sequences
within the HIV-1 mRNA and may participate in down-regulation of
this mRNA. The proposed mechanism of this inhibition included the
formation of aberrant complexes of PABP1 and the adenosine-rich regions
of INS1. Our present finding that PABP1 is capable of trafficking
between cellular compartments suggests that the complexes of PABP1 and
INS1-containing RNA may form in the nucleus, which is consistent with
the conclusion that INS acts in the nucleus. Incorrect binding of PABP1
within the mRNA may affect efficient RNP formation and export of
this mRNA.
PABP1 is clearly a multifunctional protein involved in several steps of
mRNA metabolism. Our results suggest that, by binding to the
poly(A)-containing mRNA in the nucleus, PABP1 may participate in
mRNP formation, transport, and utilization. Association of PABP1 with
poly(A) RNA in the nucleus and transport of the protein as part of an
RNP particle is an attractive hypothesis explaining different aspects
of PABP1 function, and especially participation in mRNP maturation.
 |
ACKNOWLEDGEMENTS |
We thank A. Gragerov and B. K. Felber
for helpful discussions and critical reading of the manuscript. We are
grateful to A. Zolotukhin for suggestions and discussions, G. Gragerova
and P. Carney for excellent technical assistance, T. Grange for PABP1 cDNA, F. Maldarelli for anti-SC35 antibody, E. Hudson for help with
the confocal microscopy, and A. Arthur for editing.
 |
FOOTNOTES |
*
This work was sponsored by the NCI, DHHS, National
Institutes of Health, under contract with ABL.The costs of publication of this
article were defrayed in part by the
payment of page charges. The article
must therefore be hereby marked
"advertisement" in accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
Both authors contributed equally to this work.
§
Present address: Institute fur Klinische und Molekulare Virologie,
Erlangen, Germany.
¶
To whom correspondence should be addressed: ABL-Basic Research
Program, P. O. Box B, Bldg. 535, Rm. 210, NCI-FCRDC, Frederick, MD
21702-1201. Tel.: 301-846-1474; Fax: 301-846-6368; E-mail: pavlakis{at}ncifcrf.gov.
1
The abbreviations used are: PABP1,
poly(A)-binding protein 1; GFP, green fluorescent protein; INS1,
inhibitory/instability sequence 1; HIV-1, human immunodeficiency virus,
type 1; LTR, long terminal repeat; nt, nucleotide(s); PBS,
phosphate-buffered saline; FITC, fluorescein isothiocyanate; RDR,
rhodamine red; DRB, 5,6- dichlororibofuranosylbenzimidazole.
2
R. Stauber, E. Afonina, and G. N. Pavlakis,
unpublished data.
3
S. Lee, M. Neumann, R. Stauber, A. Pause, S. Zhou, G. N. Pavlakis, and R. D. Klausner, submitted for
publication.
 |
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L. McKendrick, E. Thompson, J. Ferreira, S. J. Morley, and J. D. Lewis
Interaction of Eukaryotic Translation Initiation Factor 4G with the Nuclear Cap-Binding Complex Provides a Link between Nuclear and Cytoplasmic Functions of the m7 Guanosine Cap
Mol. Cell. Biol.,
June 1, 2001;
21(11):
3632 - 3641.
[Abstract]
[Full Text]
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C. Feral, G. Guellaen, and A. Pawlak
Human testis expresses a specific poly(A)-binding protein
Nucleic Acids Res.,
May 1, 2001;
29(9):
1872 - 1883.
[Abstract]
[Full Text]
[PDF]
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G. Kozlov, J.-F. Trempe, K. Khaleghpour, A. Kahvejian, I. Ekiel, and K. Gehring
Structure and function of the C-terminal PABC domain of human poly(A)-binding protein
PNAS,
March 29, 2001;
(2001)
71024998.
[Abstract]
[Full Text]
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H. Zhang, R. J. Pomerantz, G. Dornadula, and Y. Sun
Human Immunodeficiency Virus Type 1 Vif Protein Is an Integral Component of an mRNP Complex of Viral RNA and Could Be Involved in the Viral RNA Folding and Packaging Process
J. Virol.,
September 15, 2000;
74(18):
8252 - 8261.
[Abstract]
[Full Text]
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A. Calado, F. M.S. Tome, B. Brais, G.A. Rouleau, U. Kuhn, E. Wahle, and M. Carmo-Fonseca
Nuclear inclusions in oculopharyngeal muscular dystrophy consist of poly(A) binding protein 2 aggregates which sequester poly(A) RNA
Hum. Mol. Genet.,
September 1, 2000;
9(15):
2321 - 2328.
[Abstract]
[Full Text]
[PDF]
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I. Groulx, M.-E. Bonicalzi, and S. Lee
Ran-mediated Nuclear Export of the von Hippel-Lindau Tumor Suppressor Protein Occurs Independently of Its Assembly with Cullin-2
J. Biol. Chem.,
March 17, 2000;
275(12):
8991 - 9000.
[Abstract]
[Full Text]
[PDF]
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E. J. Bates, E. Knuepfer, and D. F. Smith
Poly(A)-binding protein I of Leishmania: functional analysis and localisation in trypanosomatid parasites
Nucleic Acids Res.,
March 1, 2000;
28(5):
1211 - 1220.
[Abstract]
[Full Text]
[PDF]
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J. Bear, W. Tan, A. S. Zolotukhin, C. Tabernero, E. A. Hudson, and B. K. Felber
Identification of Novel Import and Export Signals of Human TAP, the Protein That Binds to the Constitutive Transport Element of the Type D Retrovirus mRNAs
Mol. Cell. Biol.,
September 1, 1999;
19(9):
6306 - 6317.
[Abstract]
[Full Text]
[PDF]
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J. Zhao, L. Hyman, and C. Moore
Formation of mRNA 3' Ends in Eukaryotes: Mechanism, Regulation, and Interrelationships with Other Steps in mRNA Synthesis
Microbiol. Mol. Biol. Rev.,
June 1, 1999;
63(2):
405 - 445.
[Abstract]
[Full Text]
[PDF]
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S. Lee, M. Neumann, R. Stearman, R. Stauber, A. Pause, G. N. Pavlakis, and R. D. Klausner
Transcription-Dependent Nuclear-Cytoplasmic Trafficking Is Required for the Function of the von Hippel-Lindau Tumor Suppressor Protein
Mol. Cell. Biol.,
February 1, 1999;
19(2):
1486 - 1497.
[Abstract]
[Full Text]
[PDF]
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Y. Yannoni and K White
Domain necessary for Drosophila ELAV nuclear localization: function requires nuclear ELAV
J. Cell Sci.,
January 12, 1999;
112(24):
4501 - 4512.
[Abstract]
[PDF]
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W. Y. Lee, P. Loflin, C. J. Clancey, H. Peng, and J. E. Lever
Cyclic Nucleotide Regulation of Na+/Glucose Cotransporter (SGLT1) mRNA Stability. INTERACTION OF A NUCLEOCYTOPLASMIC PROTEIN WITH A REGULATORY DOMAIN IN THE 3'-UNTRANSLATED REGION CRITICAL FOR STABILIZATION
J. Biol. Chem.,
October 20, 2000;
275(43):
33998 - 34008.
[Abstract]
[Full Text]
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T. Suzuki, S. Futaki, M. Niwa, S. Tanaka, K. Ueda, and Y. Sugiura
Possible Existence of Common Internalization Mechanisms among Arginine-rich Peptides
J. Biol. Chem.,
January 18, 2002;
277(4):
2437 - 2443.
[Abstract]
[Full Text]
[PDF]
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G. Kozlov, J.-F. Trempe, K. Khaleghpour, A. Kahvejian, I. Ekiel, and K. Gehring
From the Cover: Structure and function of the C-terminal PABC domain of human poly(A)-binding protein
PNAS,
April 10, 2001;
98(8):
4409 - 4413.
[Abstract]
[Full Text]
[PDF]
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Copyright © 1998 by the American Society for Biochemistry and Molecular Biology.
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