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J Biol Chem, Vol. 273, Issue 29, 18332-18339, July 17, 1998
A Human Homologue of the Schizosaccharomyces pombe
rad1+ Checkpoint Gene Encodes an Exonuclease*
Andrew E.
Parker §,
Inez
Van de Weyer ,
Marc C.
Laus ,
Inge
Oostveen¶,
Jeff
Yon¶,
Peter
Verhasselt¶, and
Walter H. M. L.
Luyten
From the Department of Experimental
Molecular Biology and the ¶ Department of Applied Molecular
Biology, Janssen Research Foundation, Turnhoutseweg 30, B-2340 Beerse, Belgium
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ABSTRACT |
In the fission yeast Schizosaccharomyces
pombe the rad1+ gene is required for both
the DNA damage-dependent and the DNA
replication-dependent cell cycle checkpoints. We have
identified a human homologue of the S. pombe
rad1+ gene, designated Hrad1, as well
as a mouse homologue: Mrad1. Two Hrad1
alternative splice variants with different open reading frames have
been identified; one codes for a long form, Hrad1A, and the other
encodes a short form because of N-terminal truncation, Hrad1B. Hrad1A
has 60% identity to the S. pombe rad1+
sequence at the DNA level and 49% identity and 72% similarity at the
amino acid level. Northern blot analysis indicates elevated levels of
expression in testis and cancer cell lines. Chromosomal localization by
fluorescence in situ hybridization indicates that Hrad1 is located on chromosome 5p13.2-13.3. This region
is subject to loss of heterozygosity in several human cancers. Hrad1
also shares homology with the Saccharomyces cerevisiae
RAD17 and Ustilago maydis REC1 proteins. REC1 has
previously been characterized as a 3' 5' exonuclease with a
C-terminal domain essential for cell cycle checkpoint function. We have
expressed and purified polyhistidine-tagged fusions of Hrad1A and
Hrad1B and show that HisHrad1A has 3' 5' exonuclease activity,
whereas HisHrad1B lacks such activity. The biological functions of the
two proteins remain to be determined.
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INTRODUCTION |
For any dividing cell it is essential to maintain the integrity of
the genome ensuring that DNA replication occurs once per cell cycle and
that identical chromosomal copies are distributed equally to two
daughter cells at mitosis. When cells are subjected to conditions that
interfere with DNA replication or spindle assembly or that cause damage
to DNA, cell-cycle progression halts, permitting cell cycle phase
completion or DNA repair. These control mechanisms are referred to as
"checkpoints" (reviewed in Refs. 1-3). The loss of checkpoint
control in mammalian cells, most notably through the inactivation of
p53, results in genomic instability leading to the amplification,
rearrangement, or loss of chromosomes, events that commonly occur in
cancer cells (2, 4).
Much of our current knowledge about checkpoint control has been
obtained from studies using budding (Saccharomyces
cerevisiae) and fission (Schizosaccharomyces pombe)
yeast (reviewed in Ref. 5). In the fission yeast at least two distinct
checkpoint pathways have been identified: the DNA
replication-dependent checkpoint pathway that ensures that
S phase is completed before M phase is initiated and the DNA
damage-dependent checkpoint pathway that acts to halt the
cell cycle when genomic integrity is compromised (5). The products of
six genes, rad1+, rad3+,
rad9+, rad17+,
rad26+, and hus1+, have
been identified in S. pombe as essential components of both
checkpoint pathways (5). In S. cerevisiae the two checkpoint pathways are genetically separable; four gene products, RAD9, RAD17,
RAD24, and MEC3, have been identified as essential for the DNA
damage-dependent checkpoint pathway, and three gene
products, POL2, RFC5, and DPB11, are essential for the DNA
replication-dependent checkpoint pathway (reviewed in Refs.
3-5). Several of the S. pombe checkpoint genes have
structural homologues in the budding yeast and further conservation
across eukaryotes has recently been demonstrated with the cloning of
two human homologues of S. pombe rad3+, ATM
(ataxia telangiectasia mutated) (6)
and ATR (ataxia telangiectasia and
rad3+ related) (7, 8), and a human
homologue of S. pombe rad9+, Hrad9
(9).
The identification and characterization of human homologues of yeast
checkpoint genes provides clear evidence that at least some checkpoint
pathways are conserved between mammals and yeast. Currently little is
known about the biochemistry of checkpoint control. The genetic data in
yeast suggest that a complex of proteins mediates the monitoring of
replication-specific structures and damaged DNA (10). Furthermore,
recent biochemical studies in S. pombe and humans suggest
that the cell cycle arrest in response to DNA damage is brought about
by the activation of a signal transduction pathway involving the
putative protein kinases ATM/ATR and Hchk1, resulting in inhibitory
phosphorylation of Cdc25 and subsequent stabilization of the inhibitory
Tyr15 phosphorylation of Cdc2 (7, 11-14).
Although a great deal of progress has been made in identifying the
kinase components of the signal transduction pathway mediating cell
cycle arrest (6-8, 12), there has been little progress in identifying
the sensing mechanisms that activate the checkpoint pathways. The
S. pombe rad1+ gene acts early in the checkpoint
pathway (15) and presumably plays a role in the transmission of
information regarding the state of the genome to the checkpoint control
mechanism. The rad1-1 mutant is extremely sensitive to all
DNA damaging agents (15, 16) and fails to invoke a G2
arrest in response to ionizing radiation yet is DNA repair-competent,
indicating a loss in the ability to recognize the presence of damaged
DNA (15). The rad1-1 mutant is also sensitive to
hydroxyurea, indicating an uncoupling between the completion of S phase
and entry into mitosis (15), and is synthetically lethal when combined
with mitosis-promoting mutations such as wee1-50 (15). The
S. pombe rad1+ gene has been cloned (17), and
the predicted amino acid sequence shows significant sequence similarity
to the Ustilago maydis protein Rec1 (18) and S. cerevisiae RAD17 (20). Mutations in these genes lead to cell cycle
checkpoint defects and other phenotypes associated with alterations in
DNA repair and recombination (19, 20).
Purified Rec1 protein has been shown to have a 3' 5' exonuclease
activity (21), suggesting that Rec1/Rad1/RAD17 may be involved in
modifying DNA damage (22, 23). Studies of Rec1 truncation mutants have
demonstrated that the nuclease activity is located in the N-terminal
half of the protein. However the Rec1-dependent checkpoint
function requires the C-terminal region of the protein and does not
require the exonuclease activity (24, 25). In addition, Rec1 mutants
that lack exonuclease activity have a 100-fold higher rate of
spontaneous mutation, indicating that the exonuclease function may be
required for mismatch repair (24). Thus it would appear that the Rec1
protein is bifunctional, having an N-terminal exonuclease domain and a
C-terminal checkpoint domain.
In this report we describe the cloning and characterization of a novel
human cDNA, designated Hrad1, which is highly similar to
the S. pombe rad1+ checkpoint gene. We also
report the cloning of a mouse homologue designated Mrad1. We
show that Hrad1 is subject to alternative splicing giving
rise to two potential open reading frames
(ORFs)1 coding for a
full-length and a truncated form of Hrad1, designated Hrad1A and
Hrad1B, respectively. We have expressed in Escherichia. coli
and affinity purified N-terminal polyhistidine-tagged fusions of Hrad1A
and Hrad1B and show that Hrad1A but not Hrad1B has 3' 5'
exonuclease activity. Hrad1B corresponds to the C-terminal domain of
Rec1 that has been implicated solely in checkpoint function. Thus we
can speculate that Hrad1A plays a role in the recognition and
processing of DNA ends and also in checkpoint function, whereas the
role of Hrad1B may be restricted to checkpoint control.
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EXPERIMENTAL PROCEDURES |
Cloning and Sequencing of Human and Mouse rad1--
A search for
sequences similar to S. pombe rad1+ was carried
out using the TBLASTN program (26) against the GenBankTM
data base. Deduced amino acid sequences were aligned using the CLUSTALW
program, and similarity was determined with a blosum62 amino acid
substitution matrix. An expressed sequence tag (EST) clone with
significant sequence similarity to S. pombe
rad1+ was identified and obtained from the Integrated
Molecular Analysis of Genomes and their Expression (I.M.A.G.E.)
Consortium.
DNA sequencing was carried out on double-stranded plasmid DNA with dye
terminator chemistry as prescribed by the manufacturer (Perkin-Elmer/Applied Biosystems), and the products were resolved on an
ABI PrismTM 377 Automated Sequencer. The complete insert sequence of
the EST clone was determined.
To extend this sequence and to examine the possibility of alternative
splicing, 5' and 3' RACE-PCR was carried out according to the
manufacturer's instructions (CLONTECH).
For the 5' RACE, two gene-specific primers were designed to the 5' end
of the putative Hrad1 ORF: GSP1
(5'-ATTTGTAGGACTTCACTCGTCATAT-3') and GSP2
(5'-TGTGTATTGATTTTGCAGACT GTCA-3'). These were used in a nested PCR
reaction with Marathon-Ready human placental cDNA (CLONTECH) as the template. The first PCR reaction
made use of the GSP1 PCR primer for the 3' end, combined with the AP1
primer from CLONTECH that is complementary to an
adaptor ligated to the 5' end of all Marathon-Ready cDNAs. The
second PCR reaction started from 1-5 µl of the first and used the
GSP2 in combination with a nested AP2 primer
(CLONTECH). The reaction conditions for the first
RACE-PCR were 30 cycles of 30 s at 95 °C, 30 s at 65 °C and
1 min at 72 °C. The subsequent nested PCR used two-step cycles, each
consisting of a 30 s denaturation step at 95 °C and a combined annealing and elongation step for 2 min, which was carried out at
72 °C for the first five cycles, at 70 °C for the five subsequent cycles and at 68 °C for the remaining 25 cycles.
For the 3'RACE, two gene-specific primers were designed to the 3' end
of the putative Hrad1 ORF: GSP3
(5'-CAAGGTTATGGTTACCCTTTGATG-3') and GSP4
(5'-TCAATACACAGGAACCTGAGGAG-3'). These were used in a nested PCR
reaction with Marathon-Ready human fetal cDNA
(CLONTECH) as the template. The first PCR reaction
made use of the GSP3 PCR primer for the 5' end, combined with the AP1
primer from CLONTECH that is complementary to an
adaptor ligated to the 3' end of all Marathon-Ready cDNAs. The
second PCR reaction started from 1-5 µl of the first and used the
GSP4 primer in combination with a nested AP2 primer
(CLONTECH). After a 1-min denaturation at 94 °C, the reaction conditions for the first RACE-PCR were 30 cycles of
30 s at 95 °C and 4 min at 68 °C, concluding with a 7-min
extension at 72 °C. The subsequent nested PCR also used two-step
cycles, each consisting of a 30 s denaturation step at 94 °C
and a combined annealing and elongation step for 4 min, which was
carried out at 72 °C for the first five cycles, at 70 °C for the
five subsequent cycles and at 68 °C for the remaining 25 cycles. A
final 7-min extension step at 72 °C concluded the PCR.
The PCR reaction products were resolved by agarose gel electrophoresis,
and specific reaction products were excised, purified using the
QIAQuick gel extraction kit (Qiagen), and ligated into the pCR2.1-TOPO
vector (Invitrogen). The insert sequence of 10 independent clones was
determined and compared with the putative Hrad1 cDNA
sequence. The sequences obtained separated into two classes generating
two ORFs that we designated Hrad1A and Hrad1B.
PCR primers were designed to amplify Hrad1A, OML003
(5'-AAGGATCCGAATGCCCCTTCTGACCCAACAGA-3') and OML001
(5'-TAGCTCGAGTCAAGACTCAGATTCAGGAACTTC-3'), and
Hrad1B, OAP034 (5'-CCGCTCGAGATGTGTTACCAAGGTTAT-3') and
OAP033 (5'-GCCGAATTCTCAAGACTCAGATTCAGGAA-3'), to enable subcloning into various expression vectors. The complete ORFs of Hrad1A and
Hrad1B were PCR-amplified starting from cDNA prepared
from human SK-N-MC neuroblastoma cells and the Marathon-Ready human
placenta cDNA (CLONTECH), respectively. The
amplification products were directly cloned into the pCR2.1-TOPO vector
(Invitrogen), and the insert sequence from three independent clones of
Hrad1A and Hrad1B was determined.
To determine the DNA sequence of mouse rad1 (Mrad1), mouse
EST clones were identified by screening the GenBankTM with
Hrad1, and three independent EST clones were obtained from the
I.M.A.G.E. consortium. The insert sequence for each clone was
determined and aligned as described for Hrad1.
Northern Blot Analysis--
Two multiple human tissue Northern
blots (CLONTECH) and a human cancer cell line
Northern blot (CLONTECH) were hybridized with a
full-length Hrad1B cDNA probe, labeled with
[ -32P]dCTP by random hexamer priming with the
Prime-a-Gene Kit (Promega). The blots were hybridized in ExpressHyb
solution according to the manufacturer's instructions
(CLONTECH) and washed at high stringency (0.1 × SSC, 0.1% SDS, 50 °C, 2 × 20 min) and exposed to Kodak
X-Omat autoradiography film with intensifying screens at 70 °C.
The blots were then rehybridized with a human -actin probe
(CLONTECH) labeled with [ -32P]dCTP
as described above to verify the intactness of the RNA samples and
confirm the presence of comparable amounts of RNA across
lanes.
After stripping (0.1 × SSC, 0.1% SDS, 90 °C, 2 × 20 min), one of the blots was rehybridized with an oligonucleotide
specific to the alternatively spliced region of Hrad1A,
OAP103 (5'-CTGGAATATTTCAGGAGTTTAAA-3'), to discriminate between the
transcripts. The oligonucleotide was end-labeled in a standard reaction
using T4 polynucleotide kinase and [ -32P]ATP and
hybridized to the blot at 37 °C, and the blot was washed as
described for the previous hybridizations.
In addition, a multiple mouse tissue Northern blot
(CLONTECH) and a mouse developmental blot
(CLONTECH) were hybridized with a mouse
rad1 cDNA probe (AvaI/PstI
fragment) labeled by random hexamer priming as described above. The
blots were washed and exposed to film and then rehybridized with the
control -actin probe; all of these steps were carried out as
described for the previous hybridizations.
S. pombe Strains, Culture, and Plasmids--
S. pombe
was cultured by standard techniques (27). The genotypes of the strains
used are as follows: APY002, h+ leu1-32 ura4-D18
ade6-M216, and GBY190, h+
rad1::ura4+, leu1-32, ura4-D18, ade6-M216.
The complete ORF coding for Hrad1 was cloned into the
SmaI site of the S. pombe expression vector pREP3X (28) using standard techniques. Transformation of S. pombe was carried out by electroporation (29).
Bacterial Expression and Purification of HisHrad1A and
HisHrad1B--
The following primers were used to amplify the complete
coding regions of Hrad1A and Hrad1B: OAP105
(5'-GCACAGATCTCCCCTTCTGACCCAACAGATC-3') and OAP110
(5'-GCACAGATCTTGTTACCAAGGTTATGGTTAC-3') for the 5' end of Hrad1A
and Hrad1B, respectively, each in combination with the 3' PCR
primer OAP033 (5'-GCCGAATTCTCAAGACTCAGATTCAGGAA-3'). The PCR product
was digested with BglII and EcoRI and cloned into the corresponding sites of pRSETB (Invitrogen). This creates a fusion
protein with the following amino acid sequence N-terminal to the second
codon of Hrad1A or Hrad1B: MRGSHHHHHHGMASMTGGQQMGRDLYDDDDKDPSS. The
insert sequence of both constructs was verified.
The plasmids were transformed into E. coli BL21(DE3) cells,
and a single colony of each was inoculated into 10 ml of LB medium (containing 10 g/liter Bacto-Tryptone (Difco), 5 g/liter Bacto Yeast
extract (Difco), and 10 g/liter NaCl (Merck), brought to pH 7 with 10 N NaOH and supplemented with 100 µg/ml ampicillin) and
incubated at 250 rpm at 30 °C overnight. 4 ml of the overnight culture was added to 400 ml of medium in a 2-liter Erlenmeyer flask and
incubated until an A600 of 0.5 was reached. High
level expression was induced by the addition of
isopropyl- -D-thiogalactopyranoside to a final
concentration of 0.5 mM and a further incubation for 20 h before the cells were harvested by centrifugation. Lysates from the harvested cells were separated into the soluble and insoluble fractions using standard procedures (30).
In the case of Hrad1A, approximately 20% of the expressed protein as
judged by Coomassie staining of SDS-polyacrylamide gels was found to be
present in the soluble fraction. Affinity purification was carried out
using Ni-NTA-agarose essentially as described by the manufacturer
(QIAGEN). The soluble material was incubated with the Ni-NTA-agarose in
batch for 1 h at 4 °C on a revolving wheel. The column was then
poured and washed with 5 column volumes of sonication buffer (50 mM Tris, pH 8.0, 50 mM NaCl, 1 mM
EDTA, 0.5 mM PMSF) followed by Buffer RB, pH 8.0 (10 mM Tris, 10% glycerol, 1 mM 2-mercaptoethanol,
0.5 mM PMSF), Buffer RB, pH 6.3 and Buffer RB, pH 5.5. The
bound protein was eluted in Buffer RB, pH 8.0, containing 250 mM imidazole. Nine 1-ml fractions were collected and
analyzed by SDS-polyacrylamide gel electrophoresis. Those fractions
containing HisHrad1A were pooled and dialyzed overnight (Spectra/Por
6,000 molecular weight cut-off membrane) at 4 °C against 1 liter of
Buffer RB. The dialyzed material was centrifuged for 1 h at
4 °C and 100,000 × g. No pellet was visible by naked eye
inspection. For Hrad1B, the expressed protein was found to be almost
exclusively present in the insoluble fraction. Inclusion bodies were
prepared (30) and dissolved in Buffer A (6 M guanidine HCl,
0.1 M NaH2PO4, 0.01 M
Tris, pH 8.0, 1 mM 2-mercaptoethanol, 0.5 mM
PMSF) at 5 ml/g wet weight. The soluble material was incubated with
Ni-NTA-agarose for 1 h. The column was poured and washed with 5 column volumes of Buffer A, followed by Buffer B (8 M urea, 0.1 M NaH2PO4, 0.01 M
Tris, pH 8.0, 1 mM 2-mercaptoethanol, 0.5 mM
PMSF) and Buffer C (8 M urea, 0.1 M
NaH2PO4, 0.01 M Tris, pH 6.3, 1 mM 2-mercaptoethanol, 0.5 mM PMSF). The bound
protein was then eluted in 10 ml of Buffer B containing 250 mM imidazole. The protein was refolded by rapid 10-fold
dilution in Buffer RB and dialyzed against 1 liter of Buffer RB, pH
8.0, with several changes. The dialyzed material was centrifuged for
1 h at 4 °C and 100,000 × g. No pellet was observed. The
final protein concentration was determined by Bradford assay (Bio-Rad),
and an aliquot was separated on a 12% SDS-polyacrylamide gel to
examine the purity and integrity.
Exonuclease Assays--
The DNA used as exonuclease substrate
was plasmid pBSII (KS+) (Stratagene), digested to
completion with Sau3A. The DNA was either labeled at the 3'
termini by incorporation of [ -32P]dCTP (~3000
Ci/mmol) using the Klenow fragment of E. coli DNA polymerase
or at the 5' termini with [ -32P]ATP (~3000 Ci/mmol)
using T4 polynucleotide kinase, prior to filling in 3' recessed termini
with unlabeled dNTPs.
The exonuclease assay was carried out in a 20-µl volume
containing 50 mM Tris acetate, pH 9, 10 mM
magnesium acetate, 1 mM dithiothreitol, 0.1 mM
EDTA and substrate DNA. Exonuclease assays were carried out with 2 nmol
(as total DNA nucleotide) of end-labeled DNA containing 1.6 pmol of
32P-nucleotide as the terminal label at a specific activity
of 2 × 103 cpm/pmol. Reactions were started by the
addition of enzyme, incubated at 37 °C for 30 min unless otherwise
stated and terminated by the addition of 30 µl of an ice-cold
solution of salmon sperm DNA (0.5 mg/ml) in 25 mM EDTA and
50 µl of 10% trichloroacetic acid. The mixture was held on ice for
10 min and centrifuged at 4 °C and 10,000 × g for 10 min. A
75-µl aliquot of the supernatant was removed and mixed with 400 µl
of scintillant (UltimaGoldTM, Packard) for determination of
radioactivity by liquid scintillation counting (Tri-Carb 2100TR,
Packard).
Fluorescence in Situ Hybridization Studies
(FISH)--
Chromosomal localization was carried out by SeeDNA Inc.
(Toronto, Ontario, Canada). Lymphocytes isolated from human blood were cultured in -minimal essential medium supplemented with 10%
fetal calf serum and phytohaemagglutinin at 37 °C for 68-72 h. The
lymphocyte cultures were treated with bromodeoxyuridine (0.18 mg/ml) to
synchronize the cell population. The synchronized cells were washed
three times with serum-free medium to release the block and recultured
at 37 °C for 6 h in -minimal essential medium with thymidine
(2.5 µg/ml). Cells were harvested, and slides were prepared by using
standard procedures including hypotonic treatment, fixation, and air
drying.
The Hrad1B complete ORF was gel purified and biotinylated
with dATP using the Life Technologies, Inc. BioNick labeling kit (15 °C, 1 h) (31). The procedure for FISH detection was
performed as described previously (31, 32). Briefly, slides were baked at 55 °C for 1 h. After RNase treatment, the slides were
denatured in 70% formamide in 2 × SSC for 2 min at 70 °C
followed by dehydration with ethanol. Probes were denatured at 75 °C
for 5 min in a hybridization mix consisting of 50% formamide and 10%
dextran sulfate. Probes were loaded on the denatured chromosomal
slides. After overnight hybridization, slides were washed, and the
signal was detected. FISH signals and the 4',6-diamidino-2-phenylindole
(DAPI)-banding pattern were recorded separately by taking photographs,
and the assignment of the FISH mapping data with chromosomal bands was achieved by superimposing FISH signals with DAPI-banded chromosomes (33).
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RESULTS |
Identification of Human and Mouse Homologues of S. pombe
rad1+--
A human EST cDNA clone (accession number
AA029300) was identified in the EMBL DNA data base using the TBLASTN
homology searching program (26) with the S. pombe
rad1+-derived amino acid sequence as the query. This
clone was obtained from the I.M.A.G.E. Consortium (EST 470124), and DNA
sequence analysis of the 1.2-kb insert (Figs.
1 and
2A) revealed an ORF that was
highly similar to S. pombe Rad1. The predicted amino acid
sequence of this ORF, however, was significantly shorter than the
S. pombe Rad1 protein. To ensure that we had identified the
complete sequence of the putative Hrad1 cDNA, we carried
out 3' and 5' RACE-PCR. The 3' RACE clones that we obtained were all identical to the original EST cDNA sequence. The 5' RACE clones that we obtained separated into two classes. The first was identical to
our original cDNA clone, and the second contained a 119-nucleotide insertion presumably originating from an alternatively spliced mRNA. This additional sequence changed the reading frame
immediately upstream of the initiation codon in our original cDNA
sequence and resulted in a second and longer ORF (Figs. 1 and
2A). We have named the long and short ORFs Hrad1A and
Hrad1B, respectively, and their sequences have been deposited into
GenBankTM under accession codes AJ004974 and AJ004975,
respectively). Hrad1A has 60% identity to the S. pombe
rad1+ sequence at the DNA level and 49% identity and
72% similarity at the amino acid level (Fig. 2B). The
Hrad1A cDNA encodes a protein with a predicted molecular
mass of approximately 31.5 kDa, and the Hrad1B protein has a predicted
molecular mass of approximately 19.5 kDa.

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Fig. 1.
Nucleotide sequence and predicted amino acid
sequence of human rad1. The sequence presumed to be
alternatively spliced is underlined, and the two presumptive
initiation codons are shown in bold type. The sequences of
Hrad1A and Hrad1B have been deposited into
GenBankTM under accession codes AJ004974 and AJ004975,
respectively.
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Fig. 2.
Presumptive alternative splice and domain
structure of Hrad1. A, schematic diagram of the
proposed alternatively spliced forms of human rad1.
B, amino acid sequence alignment between human Rad1,
S. pombe Rad1, S. cerevisiae RAD17, and U. maydis REC1 performed using the CLUSTALW alignment program.
Residues conserved between at least three species are highlighted in
gray, those conserved in all four are highlighted in
black.
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A subsequent search of the data bases resulted in the identification of
several mouse ESTs homologous to the Hrad1 cDNA. Three clones were obtained from the I.M.A.G.E. Consortium (accession codes AA387891, AA387463, and AA386981) and sequenced, resulting
in the identification of a single ORF that encodes a protein with a
predicted molecular mass of approximately 31.5 kDa (data not shown)
(the nucleotide sequence was deposited into GenBankTM under
accession code AJ004976). Mouse and human Rad1A are 91% identical at
the amino acid level. None of the mouse clones sequenced corresponded
to Hrad1B.
Northern Blot Analysis of Human and Mouse rad1--
The transcript
profiles of human and mouse rad1 were examined by probing
several multiple tissue Northern blots (CLONTECH), a cancer cell line Northern blot (CLONTECH), and a
mouse developmental Northern blot (CLONTECH). Three
transcripts of approximately 5, 3, and 1.3 kb were identified for
Hrad1, and all were elevated in the cancer cell lines (Fig.
3A). All three transcripts
were present in differentiated tissues with the highest levels in
testis, skeletal muscle, placenta, and heart. There was a specific
increase in the shortest transcript in testis. The alternative splice
we identified represents a difference of 119 nucleotides, which is too
small to account by itself for the differences between the three
transcripts.

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Fig. 3.
Northern blot analysis of
Hrad1 and Mrad1. A, the
multiple tissue Northern blot and cancer cell line Northern filters
(CLONTECH) were hybridized with the
Hrad1B-derived complete ORF. RNA size markers are indicated.
The blots were then rehybridized with a human -actin cDNA probe
(CLONTECH) to verify the loading of comparable
amounts of RNA across lanes as well as the lack of degradation of the
samples. B, the center blot was then hybridized with an
oligonucleotide specific for the alternatively spliced region of
Hrad1 to discriminate between the Hrad1A and
Hrad1B transcripts. C, a mouse multiple tissue
Northern blot and a developmental Northern blot
(CLONTECH) were hybridized with a mouse
rad1 cDNA probe. The blots were then rehybridized with a
human -actin cDNA probe (CLONTECH). Exposure
times were overnight for the Hrad1 probe and 30 min for the
-actin probe.
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To discriminate between the transcripts we probed the blot containing
the testis sample with an oligonucleotide (OAP103) derived from the
alternatively spliced region. This hybridized specifically to the 3-kb
transcript indicating that the 1.3-kb transcript, which is highly
elevated in testis does not contain the alternatively spliced region
and therefore does not correspond to Hrad1A (Fig. 3B). Further searches of the EST data bases have revealed a
possible alternative 3'-untranslated region (accession number
AA464502), which may explain at least one of the other transcripts
(data not shown).
A single transcript of approximately 2.2 kb was identified for mouse
rad1 and was expressed at comparable levels in all tissues and at all stages of development tested (Fig. 3C). We have
not established whether mouse rad1 is subject to alternative
splicing as demonstrated for Hrad1. Our Northern blot
experiment does not provide the resolution to display two transcripts
differing by a 119-nucleotide alternative splice.
Complementation of S. pombe rad1--
Complementation has often
been used to demonstrate biological activity for mammalian homologues
of yeast proteins (34, 35). We examined whether Hrad1 could
complement the UV irradiation (DNA damage-dependent
checkpoint) or hydroxyurea (DNA replication-dependent checkpoint) sensitivity phenotypes of a S. pombe
rad1::ura4+ strain. Hrad1A and
Hrad1B were cloned into the S. pombe expression vector pREP3x (28) and transformed into wild-type and
rad1::ura4+ cells. Transformants were
exposed to varying doses of UV or transiently exposed to 10 mM hydroxyurea as described previously (16). We observed no
complementation of the UV or hydroxyurea sensitivity phenotypes (data
not shown).
Hrad1 Transcription Is Not DNA Damage-inducible--
Many genes
involved in the response to DNA damage are induced by exposure to DNA
damaging agents. To examine whether this was the case for
Hrad1 we exposed human HaCaT cells to 30 J/m2 of
UV radiation, a dose sufficient to cause DNA damage and invoke a cell
cycle arrest (36). We prepared RNA at various time points up to 8 h after exposure and then determined the effect upon Hrad1 transcript level using an RNase protection assay. The level of the
Hrad1 transcript remained constant throughout the time
course (data not shown). Consequently, we conclude that
Hrad1 transcription is not increased in response to
UV-induced DNA damage.
Affinity Purified HisHrad1A Exhibits Exonuclease Activity--
The
sequence of Hrad1 is highly similar to that of REC1 from U. maydis, and purified hexahistidine-tagged Rec1 has been shown to
have exonuclease activity (21). To test whether Hrad1 shared this
biochemical activity, both Hrad1A and Hrad1B were expressed in E. coli as N-terminal hexahistidine-tagged fusion proteins using the
pRSETB inducible expression vector (Invitrogen). The proteins
designated HisHrad1A and HisHrad1B were purified by immobilized metal
affinity chromatography (Qiagen). Bacterially expressed HisHrad1A was
found predominantly in the insoluble fraction; however, approximately
20% of the protein as judged by Coomassie staining of
SDS-polyacrylamide gels was present in the soluble fraction, allowing
purification under nondenaturing conditions. HisHrad1B was found
exclusively in the insoluble fraction and was isolated from inclusion
bodies under denaturing conditions and refolded by rapid dilution.
HisHrad1A and HisHrad1B have predicted molecular masses of
approximately 35.5 and 23.5 kDa, respectively. The electrophoretic mobility of the purified proteins on SDS-polyacrylamide gels was in
agreement with these predictions (Fig.
4).

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Fig. 4.
Purification of HisHrad1A and HisHrad1B.
Aliquots of the various steps in the purification of HisHrad1A were
analyzed by SDS-polyacrylamide gel electrophoresis and Coomassie Blue
staining. Size markers are indicated in kDa on the left
side. Lane 1, lysate of uninduced cells (equivalent to
20 µl of culture) containing HisHrad1A expression plasmid. Lane
2, lysate of induced cells (equivalent to 20 µl of culture)
containing HisHrad1A expression plasmid. Lane 3, soluble
fraction from induced cells (equivalent to 300 µl of culture)
containing HisHrad1A expression plasmid. Lane 4, insoluble
fraction from induced cells (equivalent to 300 µl of culture)
containing HisHrad1A expression plasmid. Lane 5, affinity
purified HisHrad1A (2 µg). Lane 6, affinity purified
HisHrad1B (2 µg).
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|
First we assayed purified HisHrad1A and HisHrad1B for the ability to
release labeled 5' or 3' terminal nucleotides from linear double-stranded DNA. HisHrad1A exhibited clear nucleolytic activity (Fig. 5, A and B),
releasing radionucleotide from both the 5' and the 3' termini with a
6-fold preference for the 3' end. HisHrad1B did not show any
nucleolytic activity. This may be a consequence of the different
purification regimes or may reflect a true difference in biological
activity.

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Fig. 5.
Exonucleolytic activity of affinity purified
HisHrad1A. The affinity purified HisHrad1A and HisHrad1B were
examined for exonuclease activity. The results are the means of four
experiments. A, 3 µg of protein was incubated under
standard reaction conditions with 3' 32P end-labeled
double-stranded DNA for the times indicated. HisHrad1B exhibited no 3'
5' exonuclease activity. B, 3 µg of protein was
incubated under standard reaction conditions for 30 min with 3' and 5'
32P end-labeled double- and single-stranded DNA.
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|
The conditions for optimal activity were examined and found to be
similar to those observed for REC1 (21). Maximum activity was obtained
in a low ionic strength buffer at pH 7.4-9.0 and containing
Mg2+ (Table I). Activity was
unaffected by ATP or dATP but was significantly reduced by 100 mM NaCl. The replacement of Mg2+ with
Zn2+ or the addition of 10 mM EDTA resulted in
complete loss of activity (Table I).
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|
Table I
Characterization of HisHrad1A nuclease activity
Reactions were carried out under standard conditions using
3'-32P-labeled double-stranded DNA as substrate with the
indicated additions or modifications. 3 µg of protein was used in
each reaction mix, and maximum activity was 12.5% of end nucleotide
released.
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|
The substrate specificities were also examined in greater detail.
HisHrad1A has an approximately 6-fold preference for 3' termini under
these assay conditions and is approximately 2-fold more active when
single-stranded DNA is provided as substrate (Fig. 5B). The
activity associated with HisHrad1A differs from known
Mg2+-dependent exonucleases (Table
II), strongly suggesting that the activity we observed is inherent in the Rad1A gene product.
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Table II
Comparison of nuclease activities with respect to substrate
The data for REC1, exonuclease I, exonuclease, and exonuclease III
are taken from Thelen et al. (21). All Hrad1A reactions were
carried out as described under "Experimental Procedures" for 30 min
at 37 °C. Reaction conditions for the other (cited) enzymes were
similar but not identical, so that exact numerical comparisons are not
warranted.
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Chromosomal Localization of Hrad1--
The chromosomal position of
Hrad1as determined to establish whether a loss of
heterozygosity associated with Hrad1 might be linked with
any known disease. The 1.2-kb cDNA corresponding to Hrad1B (EST 470124) was used as a probe for FISH analysis.
Under the conditions used, the hybridization efficiency was
approximately 69% for the probe (among 100 checked mitotic figures, 69 showed signals on one pair of chromosomes). The DAPI banding pattern was used to establish that Hrad1 localizes to the short arm
of chromosome 5. No additional locus was picked up by FISH detection under the conditions used. The detailed position was further determined based upon the analysis of 10 photographs leading to the conclusion that Hrad1 is located on human chromosome 5p13.3-13.2 (Fig.
6). Loss of heterozygosity of this region
of chromosome 5 has been linked to a variety of human neoplasias
including lung cancer (37, 38).

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Fig. 6.
Chromosomal localization of the
Hrad1 gene determined by FISH analysis.
A, photograph of metaphase chromosome spread labeled with
fluorescent Hrad1 cDNA probe. B, photograph
of the same mitotic figure stained with DAPI to identify chromosomes
and reveal chromosome band patterns. Comparison with panel A
shows the FISH signal is located on chromosome 5. C,
idiogram of chromosome 5. The signal was further localized to position
p13.2-p13.3 by determination of the distribution of signals from 10 independent photographs.
|
|
 |
DISCUSSION |
In S. pombe, cell cycle checkpoint arrest in response
to DNA damage or inhibition of replication is dependent on multiple proteins. Six gene products have been identified that act early in the
process of checkpoint control, and to date human homologues of two of
these proteins have been identified, Hrad9 (9) and ATR (7, 8). Based
upon sequence homology and biochemical activity, we have identified a
third component, Hrad1, a human homologue of he S. pombe rad1+ cell cycle checkpoint gene. Hrad1 is
highly similar to S. pombe rad1+, S. cerevisiae RAD17, and the REC1 gene of
U. maydis. Mutations in these genes lead to similar cell
cycle checkpoint defects and other phenotypes associated with
alterations in DNA repair and recombination (16, 19, 20).
We have shown that Hrad1 is subject to alternative splicing
giving rise to two ORFs, a long form, designated Hrad1A, and
an N-terminal truncation, designated Hrad1B. The Hrad1 gene
has at least three transcripts of 5, 3, and 1.3 kb present in all
tissues that we examined and that are increased in all the cancer cell lines examined, suggesting either that transcription of
Hrad1 is proliferation-dependent or that it is
increased in response to the genomic instability of cancer cell lines.
In testis we observed an increase specifically in the 1.3-kb
transcript. We have demonstrated that this transcript does not
correspond to Hrad1A, suggesting that it corresponds to Hrad1B or an as
yet unidentified third form of Hrad1. Several yeast cell cycle
checkpoint genes play important roles in meiosis (39) and recently ATM and ATR (the human homologues of S. pombe rad3)
were shown to be highly expressed in testis where they interact with
meiotic chromosomes. This suggests a direct role for these proteins in recognizing and responding to DNA strand interruptions that occur during meiotic recombination (40). Hrad1 could form part of this
recognition complex in association with ATM or ATR.
When expressed in an S. pombe
rad1::ura4+ strain, both Hrad1A
and Hrad1B failed to complement the phenotypes associated
with loss of checkpoint function. However, this should not be taken as
evidence against functional homology because failure to complement has
been shown for other checkpoint genes such as ATR and
Hchk1 (7,
12).2
The Hrad1 amino acid sequence is significantly similar to the U. maydis REC1 protein, indicating that Hrad1 may have a 3' 5'
exonuclease activity. We have confirmed the predicted 3' 5'
exonuclease activity for Hrad1A by demonstrating that Hrad1A expressed
as a hexahistidine fusion protein and purified from E. coli
is an exonuclease with a 6-fold preference for 3' termini. The
biochemical properties of HisHrad1A were very similar to REC1 (21). The
truncated Hrad1B, expressed as a hexahistidine fusion protein, lacks
detectable exonuclease activity. This may reflect the in
vivo biological activity or may be a consequence of the purification regimes. To fully address this question, purification of
endogenous Hrad1B from mammalian cells or from a heterologous expression system that yields native protein will be required.
An analysis of C-terminal truncations of the Rec1 protein has
established that the C-terminal portion of the Rec1 protein is not
essential for exonuclease activity but is crucial for G2-M checkpoint function (24, 25). The checkpoint-compromised U. maydis rec1-1 mutant results from a C-terminal truncation lacking 122 amino acids (24), including a block of sequence containing four
periodically spaced leucines that is conserved in Hrad1 and S. pombe Rad1 but not in S. cerevisiae RAD17 (24). This
may represent a domain important in interactions with other checkpoint components. In addition, the rec1-5 mutant that lacks
exonuclease activity has a 100-fold higher rate of spontaneous
mutation, indicating that the exonuclease function may be required for
mismatch repair (24). Thus, the Rec1 protein appears bifunctional,
having an N-terminal exonuclease domain and a C-terminal checkpoint
domain. This type of separation of enzymatic and checkpoint domains has also been described for S. cerevisiae DNA polymerase (41). The bifunctional nature is likely to be conserved in Hrad1A based upon our biochemical studies and the protein sequence similarity between Hrad1A and the U. maydis Rec1 protein. However, in
humans we have identified an additional component, Hrad1B, which
corresponds to the C-terminal region of Rec1 implicated solely in
checkpoint control. We cannot discount the possibility that the
alternatively spliced mRNA coding for Hrad1B is not translated.
However, if the Hrad1B mRNA leads to the production of a protein,
then what role might it play in DNA metabolism or checkpoint control?
In fission yeast, rad1 is required for both the DNA damage-
and DNA replication-dependent checkpoints, whereas in
S. cerevisiae RAD17 is only required for the DNA
damage-dependent checkpoint. It has been demonstrated that
RAD17 functions in conjunction with RAD24 and MEC1 to activate DNA
degradation (23), leading to the suggestion that there is a requirement
to process single- or double-stranded breaks such that single-stranded
DNA is exposed to activate the checkpoint (22, 23). If we consider
Hrad1 as part of a complex that acts as a surveillance mechanism
monitoring the genome and communicating the presence of DNA damage or
unreplicated DNA to the cell cycle machinery, then it is conceivable
that in higher eukaryotes two types of surveillance complexes exist
separating the DNA damage- and DNA replication-dependent
checkpoint pathways. Hrad1A could be specifically required for the DNA
damage-dependent checkpoint, able to monitor the genome via
the C-terminal checkpoint domain and process single- and
double-stranded breaks via the N-terminal exonuclease domain. A link
between the mismatch repair system and the DNA
damage-dependent checkpoint has been demonstrated (42).
Hrad1B may have a function in the DNA replication-dependent checkpoint that might require only the monitoring activity and not the
nuclease function to identify replication forks. Hrad1B also
contains the sequence shown to be essential for checkpoint function in
a mutational analysis of S. pombe Rad1 (43). The increase in
transcription that we observed in testis could also signify a role for
Hrad1B in meiotic recombination in conjunction with ATR and ATM.
The loss of checkpoint function has been shown to lead to genomic
instability even in the absence of exogenous DNA damage (44). In
humans, the p53 gene and the ATM gene are not
only required for the G1-S phase checkpoint (45, 46) but
also act as tumor suppressors (47-50). It is likely that other
checkpoint genes will act as tumor suppressors. The Hrad1
gene is located on chromosome 5p13.2-13.3. Loss of heterozygosity of
this region of chromosome 5 has been associated with a tumor suppressor
function most notably in human lung cancer (37, 38). The CDK2/cyclin A-associated protein p45 (SKP2) has been mapped to 5p13 (51), but
Hrad1 should also be considered as a candidate tumor
suppressor gene in this region.
The precise roles that Hrad1A and Hrad1B play in cell cycle
control, DNA repair, and tumor suppression remain to be
determined. This study represents a starting point to begin to unravel
the potential multiple roles for the Hrad1 gene product.
 |
ACKNOWLEDGEMENTS |
We thank Jörg Sprengel for
bioinformatics assistance, Grant Brown for providing S. pombe strains, George Brush, Grant Brown, Alan Richardson, and
Paul Russell for their critical review of the manuscript, and the
reviewer for helpful comments.
 |
FOOTNOTES |
*
The costs of publication of this
article were defrayed in part by the
payment of page charges. The article
must therefore be hereby marked
"advertisement" in
accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
The nucleotide sequence(s) reported in this paper has been submitted to the GenBankTM/EMBL Data Bank with accession number(s) AJ004974, AJ004975, and AJ004976.
§
Present address: Cardiovascular Metabolism and Musculoskeletal
Research Dept., Zeneca Pharmaceuticals, Alderley Edge, Cheshire, UK.
To whom correspondence should be addressed. Tel.: 32-14-602618 or 32-14-605734; Fax: 32-14-606111; E-mail:
wluyten{at}janbe.jnj.com.
1
The abbreviations used are: ORF, open reading
frame; RACE, rapid amplification of cDNA ends; FISH, fluorescence
in situ hybridization; DAPI, 4',6-diamidino-2-phenylindole;
EST, expressed sequence tag; PCR, polymerase chain reaction; PMSF,
phenylmethylsulfonyl fluoride; kb, kilobase pair(s).
2
A. Parker, unpublished results.
 |
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[Abstract]
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R. E. Jones, J. R. Chapman, C. Puligilla, J. M. Murray, A. M. Car, C. C. Ford, and H. D. Lindsay
XRad17 Is Required for the Activation of XChk1 But Not XCds1 during Checkpoint Signaling in Xenopus
Mol. Biol. Cell,
September 1, 2003;
14(9):
3898 - 3910.
[Abstract]
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E. A. Barnes, L. A. Porter, J.-L. Lenormand, R. W. Dellinger, and D. J. Donoghue
Human Spy1 Promotes Survival of Mammalian Cells following DNA Damage
Cancer Res.,
July 1, 2003;
63(13):
3701 - 3707.
[Abstract]
[Full Text]
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M. Giannattasio, S. Sabbioneda, M. Minuzzo, P. Plevani, and M. Muzi-Falconi
Correlation between Checkpoint Activation and in Vivo Assembly of the Yeast Checkpoint Complex Rad17-Mec3-Ddc1
J. Biol. Chem.,
June 13, 2003;
278(25):
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[Abstract]
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I. Hirai and H.-G. Wang
A Role of the C-terminal Region of Human Rad9 (hRad9) in Nuclear Transport of the hRad9 Checkpoint Complex
J. Biol. Chem.,
July 5, 2002;
277(28):
25722 - 25727.
[Abstract]
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K. Yoshida, K. Komatsu, H.-G. Wang, and D. Kufe
c-Abl Tyrosine Kinase Regulates the Human Rad9 Checkpoint Protein in Response to DNA Damage
Mol. Cell. Biol.,
May 15, 2002;
22(10):
3292 - 3300.
[Abstract]
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L. Zou, D. Cortez, and S. J. Elledge
Regulation of ATR substrate selection by Rad17-dependent loading of Rad9 complexes onto chromatin
Genes & Dev.,
January 15, 2002;
16(2):
198 - 208.
[Abstract]
[Full Text]
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L. A. Lindsey-Boltz, V. P. Bermudez, J. Hurwitz, and A. Sancar
Purification and characterization of human DNA damage checkpoint Rad complexes
PNAS,
September 25, 2001;
98(20):
11236 - 11241.
[Abstract]
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A. Kataoka, N. Sadanaga, K. Mimori, H. Ueo, G. F. Barnard, K. Sugimachi, D. Auclair, L. B. Chen, and M. Mori
Overexpression of HRad17 mRNA in Human Breast Cancer: Correlation with Lymph Node Metastasis
Clin. Cancer Res.,
September 1, 2001;
7(9):
2815 - 2820.
[Abstract]
[Full Text]
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M. Kai, H. Tanaka, and T. S.-F. Wang
Fission Yeast Rad17 Associates with Chromatin in Response to Aberrant Genomic Structures
Mol. Cell. Biol.,
May 15, 2001;
21(10):
3289 - 3301.
[Abstract]
[Full Text]
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P. Perego, G. S. Jimenez, L. Gatti, S. B. Howell, and F. Zunino
Yeast Mutants As a Model System for Identification of Determinants of Chemosensitivity
Pharmacol. Rev.,
December 1, 2000;
52(4):
477 - 492.
[Abstract]
[Full Text]
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H. Hang, S. J. Rauth, K. M. Hopkins, and H. B. Lieberman
Mutant alleles of Schizosaccharomyces pombe rad9+ alter hydroxyurea resistance, radioresistance and checkpoint control
Nucleic Acids Res.,
November 1, 2000;
28(21):
4340 - 4349.
[Abstract]
[Full Text]
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R. S. Weiss, T. Enoch, and P. Leder
Inactivation of mouse Hus1 results in genomic instability and impaired responses to genotoxic stress
Genes & Dev.,
August 1, 2000;
14(15):
1886 - 1898.
[Abstract]
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C. Venclovas and M. P. Thelen
Structure-based predictions of Rad1, Rad9, Hus1 and Rad17 participation in sliding clamp and clamp-loading complexes
Nucleic Acids Res.,
July 1, 2000;
28(13):
2481 - 2493.
[Abstract]
[Full Text]
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T. Bessho and A. Sancar
Human DNA Damage Checkpoint Protein hRAD9 Is a 3' to 5' Exonuclease
J. Biol. Chem.,
March 10, 2000;
275(11):
7451 - 7454.
[Abstract]
[Full Text]
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J. G. Moggs, P. Grandi, J.-P. Quivy, Z. O. Jónsson, U. Hübscher, P. B. Becker, and G. Almouzni
A CAF-1-PCNA-Mediated Chromatin Assembly Pathway Triggered by Sensing DNA Damage
Mol. Cell. Biol.,
February 15, 2000;
20(4):
1206 - 1218.
[Abstract]
[Full Text]
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T. Caspari, M. Dahlen, G. Kanter-Smoler, H. D. Lindsay, K. Hofmann, K. Papadimitriou, P. Sunnerhagen, and A. M. Carr
Characterization of Schizosaccharomyces pombe Hus1: a PCNA-Related Protein That Associates with Rad1 and Rad9
Mol. Cell. Biol.,
February 15, 2000;
20(4):
1254 - 1262.
[Abstract]
[Full Text]
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D Griffiths, M Uchiyama, P Nurse, and T. Wang
A novel mutant allele of the chromatin-bound fission yeast checkpoint protein Rad17 separates the DNA structure checkpoints
J. Cell Sci.,
January 3, 2000;
113(6):
1075 - 1088.
[Abstract]
[PDF]
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T. WEINERT, E. LITTLE, L. SHANKS, A. ADMIRE, R. GARDNER, C. PUTNAM, R. MICHELSON, K. NYBERG, and P. SUNDARESHAN
Details and Concerns Regarding the G2/M DNA Damage Checkpoint in Budding Yeast
Cold Spring Harb Symp Quant Biol,
January 1, 2000;
65(0):
433 - 442.
[Abstract]
[PDF]
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R.S. WEISS, P. LEDER, and T. ENOCH
A Conserved Role for the Hus1 Checkpoint Protein in Eukaryotic Genome Maintenance
Cold Spring Harb Symp Quant Biol,
January 1, 2000;
65(0):
457 - 466.
[Abstract]
[PDF]
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M.-S. Chang, H. Sasaki, M. S. Campbell, S.-K. Kraeft, R. Sutherland, C.-Y. Yang, Y. Liu, D. Auclair, L. Hao, H. Sonoda, et al.
HRad17 Colocalizes with NHP2L1 in the Nucleolus and Redistributes after UV Irradiation
J. Biol. Chem.,
December 17, 1999;
274(51):
36544 - 36549.
[Abstract]
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F. Paques and J. E. Haber
Multiple Pathways of Recombination Induced by Double-Strand Breaks in Saccharomyces cerevisiae
Microbiol. Mol. Biol. Rev.,
June 1, 1999;
63(2):
349 - 404.
[Abstract]
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R. P. St. Onge, C. M. Udell, R. Casselman, and S. Davey
The Human G2 Checkpoint Control Protein hRAD9 Is a Nuclear Phosphoprotein That Forms Complexes with hRAD1 and hHUS1
Mol. Biol. Cell,
June 1, 1999;
10(6):
1985 - 1995.
[Abstract]
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S. Bao, M.-S. Chang, D. Auclair, Y. Sun, Y. Wang, W.-K. Wong, J. Zhang, Y. Liu, X. Qian, R. Sutherland, et al.
HRad17, a Human Homologue of the Schizosaccharomyces pombe Checkpoint Gene rad17, Is Overexpressed in Colon Carcinoma
Cancer Res.,
May 1, 1999;
59(9):
2023 - 2028.
[Abstract]
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E. Volkmer and L. M. Karnitz
Human Homologs of Schizosaccharomyces pombe Rad1, Hus1, and Rad9 Form a DNA Damage-responsive Protein Complex
J. Biol. Chem.,
January 8, 1999;
274(2):
567 - 570.
[Abstract]
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A. E. Parker, I. Van de Weyer, M. C. Laus, P. Verhasselt, and W. H. M. L. Luyten
Identification of a Human Homologue of the Schizosaccharomyces pombe rad17+ Checkpoint Gene
J. Biol. Chem.,
July 17, 1998;
273(29):
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[Abstract]
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R. L. Cai, Y. Yan-Neale, M. A. Cueto, H. Xu, and D. Cohen
HDAC1, a Histone Deacetylase, Forms a Complex with Hus1 and Rad9, Two G2/M Checkpoint Rad Proteins
J. Biol. Chem.,
September 1, 2000;
275(36):
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[Abstract]
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M. A. Burtelow, S. H. Kaufmann, and L. M. Karnitz
Retention of the Human Rad9 Checkpoint Complex in Extraction-resistant Nuclear Complexes after DNA Damage
J. Biol. Chem.,
August 18, 2000;
275(34):
26343 - 26348.
[Abstract]
[Full Text]
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M. Rauen, M. A. Burtelow, V. M. Dufault, and L. M. Karnitz
The Human Checkpoint Protein hRad17 Interacts with the PCNA-like Proteins hRad1, hHus1, and hRad9
J. Biol. Chem.,
September 15, 2000;
275(38):
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[Abstract]
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M.-J. Chen, Y.-T. Lin, H. B. Lieberman, G. Chen, and E. Y.-H. P. Lee
ATM-dependent Phosphorylation of Human Rad9 Is Required for Ionizing Radiation-induced Checkpoint Activation
J. Biol. Chem.,
May 4, 2001;
276(19):
16580 - 16586.
[Abstract]
[Full Text]
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D. J. Mazur and F. W. Perrino
Structure and Expression of the TREX1 and TREX2 3'right-arrow5' Exonuclease Genes
J. Biol. Chem.,
April 27, 2001;
276(18):
14718 - 14727.
[Abstract]
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D. J. Mazur and F. W. Perrino
Excision of 3' Termini by the Trex1 and TREX2 3'right-arrow5' Exonucleases. CHARACTERIZATION OF THE RECOMBINANT PROTEINS
J. Biol. Chem.,
May 11, 2001;
276(20):
17022 - 17029.
[Abstract]
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M. A. Burtelow, P. M. K. Roos-Mattjus, M. Rauen, J. R. Babendure, and L. M. Karnitz
Reconstitution and Molecular Analysis of the hRad9-hHus1-hRad1 (9-1-1) DNA Damage Responsive Checkpoint Complex
J. Biol. Chem.,
July 6, 2001;
276(28):
25903 - 25909.
[Abstract]
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H. Zhang, Z. Zhu, G. Vidanes, D. Mbangkollo, Y. Liu, and W. Siede
Characterization of DNA Damage-stimulated Self-interaction of Saccharomyces cerevisiae Checkpoint Protein Rad17p
J. Biol. Chem.,
July 6, 2001;
276(28):
26715 - 26723.
[Abstract]
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Copyright © 1998 by the American Society for Biochemistry and Molecular Biology.
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