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J Biol Chem, Vol. 273, Issue 42, 27474-27483, October 16, 1998
Sp1 and Sp3 Regulate Transcriptional Activity of the Facilitative
Glucose Transporter Isoform-3 Gene in Mammalian Neuroblasts and
Trophoblasts*
Rosario A.
Rajakumar ,
Shanthie
Thamotharan ,
Ram K.
Menon§, and
Sherin U.
Devaskar ¶
From the Divisions of Neonatology and Developmental
Biology and § Endocrinology, the Department of Pediatrics,
University of Pittsburgh School of Medicine, Magee-Womens Research
Institute, Pittsburgh, Pennsylvania 15213
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ABSTRACT |
The murine facilitative glucose transporter
isoform 3 (Glut 3) is developmentally regulated and is predominantly
expressed in neurons and trophoblasts. Employing the primer extension
and RNase protection assays, the transcription start site (denoted as
+1) of the murine Glut 3 gene was localized to 305 base pairs (bp) 5'
to the ATG translation start codon. Transient transfection assays in
N2A, H19-7 neuroblasts, and HRP.1 trophoblasts using sequential
5'-deletions of the murine Glut 3-luciferase fusion gene indicated that
the 203 to +237 bp region with reference to the transcriptional start
site contained promoter activity. Repressor function was limited to the
137 to 130 bp region within the transcriptional activation domain.
The nuclear factors Sp1 and Sp3 bound this GC-rich region in N2A,
H19-7, and HRP.1 cells. Dephosphorylation of Sp1 was essential for Glut
3 DNA binding. The related Sp3 protein also bound this same region of
mouse Glut 3 in all three cell lines. Mutations of the Sp1-binding site
employed in transient transfection and mobility shift assays confirmed the nature of the DNA-binding proteins, while supershift assays with
anti-Sp1 and anti-Sp3 IgGs characterized the differences in the two
DNA-binding proteins. Co-transfection of the Glut 3-luciferase fusion
gene with or without mutations of the Sp1-binding site along with the
Sp1 or Sp3 expression vectors in Drosophila SL2 cells
confirmed a reciprocal effect, with Sp1 suppressing and Sp3 activating
Glut 3 gene transcription.
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INTRODUCTION |
Facilitative glucose transporters
(Glut)1 are a family of
structurally related, membrane-spanning glycoproteins that mediate the
transport of glucose across bilipid layers of cell membranes along a
concentration gradient (1, 2). Of the six major isoforms cloned to
date, Glut 3, the most efficient isoform with a Km
of 1.8 mM (1), is predominantly expressed in cells with a
high energy requirement. These cells include neurons of the brain (3)
and retina (4) and placental trophoblasts (5). Various studies have
examined the response of Glut 3 secondary to differing perturbations.
In the rat brain, there is an increase in Glut 3 expression under
chronic insulin-induced glucose deprivation (6), hyperglycemia of
diabetes mellitus (7, 8), water deprivation (7), hypoxic ischemia (9),
and depolarization (10). In streptozotocin-induced diabetes, an
increase in rat placental Glut 3 levels (11) has also been
demonstrated.
Cell-specific localization has revealed that Glut 3 is predominantly
expressed in neuronal processes at a stage in development when most
neuronal cells are fully differentiated (3). Prior to the mature stages
of development, little to no Glut 3 is noted in cells with a neuronal
phenotype (3). In placental trophoblasts, Glut 3 is primarily localized
to the cells on the fetal surface of the materno-fetal barrier (5), and
the levels of this protein increase during late gestation when fetal
growth is maximal (12). In both cell types, Glut 1, the isoform that is
ubiquitously found in all proliferating cells (1, 2), is replaced by
Glut 3 when the cells begin differentiating to attain their mature
functional form (3, 5, 12). This developmental expression of Glut 3 in
brain and placenta is not unlike the other glucose transporter isoforms, namely Glut 4 in insulin-sensitive tissues (13) and Glut 2 in
the liver (13), which replace Glut 1 when the cells in these tissues
stop proliferating and begin differentiating into the adult
phenotype.
Recent studies using antisense oligoprobes in producing a Glut 3 null
mutant mouse resulted in abnormal blastocyst differentiation leading to
an arrest in embryonic development (14). This observation attests to
the critical need for Glut 3 during the early stages of embryonic
differentiation. Thus Glut 3 at this stage of development cannot be
effectively replaced by any other related glucose transporter isoform
(Glut 1), supporting its indispensable role in cell development, particularly in differentiation of high energy-requiring cell types (3,
5, 14).
To date, the promoter region and the transcriptional machinery of the
Glut 3 gene have not been characterized. Cis-elements and
trans-activating factors that confer tissue specificity have been
identified in the case of other facilitative glucose transporter isoforms such as Glut 1 (15), Glut 2 (16), and Glut 4 (17). We
undertook the present study to identify cis-elements and
transactivating factors involved in regulating Glut 3 expression in
neuroblasts and trophoblasts. We employed the murine Glut 3 genomic
sequences and two cell lines arising from different species that
express the neuroblastic phenotype along with an embryonic
trophoblastic cell line (positive control) and COS-7 cells (negative
control). We identified the cis-elements (bp 203 to +237), which
activate Glut 3 transcription, and further demonstrated that
suppression of the Glut 3 transcriptional activity resided (bp 137 to
130) within this activating region. These suppressive cis-elements bound Sp1 and Sp3 in neuroblasts and trophoblasts. Both of these nuclear factors reciprocally modify Glut 3 gene transcription in the
Sp-deficient Drosophila SL2 cells. Thus, in cultured
proliferating neuroblasts and trophoblasts, Sp1 possibly represses
while Sp3 activates murine Glut 3 transcription.
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EXPERIMENTAL PROCEDURES |
Cells--
N2A murine neuroblastoma cells (American Tissue
Culture Collection, Rockville, MD) were grown at 37 °C with 95%
air, 5% CO2 in 10 µg/ml poly-L-lysine-coated
culture flasks and maintained in Dulbecco's modified Eagle's medium
supplemented with 2 mM glutamine, penicillin (100 units/ml), streptomycin (100 units/ml), and 10% fetal bovine serum.
COS-7 cells (monkey kidney fibroblasts) (American Tissue Culture
Collection) were grown directly on unmodified culture flasks under
similar conditions. An immortalized rat embryonic hippocampal neural
cell line with a neuroblastic phenotype (H19-7) that has previously
(18) been characterized with neuronal markers was also maintained under
the same culture conditions with the addition of G418 for selection of
the immortalized cells. Mid-gestation trophoblastic cells obtained from
the rat placenta were grown and maintained in RPMI medium with 10%
fetal bovine serum in the presence of 50 µM
-mercaptoethanol and 1 mM sodium pyruvate as described
previously (19).
RNA Studies--
Poly(A+)-enriched RNA was extracted
from confluent cultured N2A, COS-7, H19-7, and HRP.1 cells obtained
from a single 175-cm tissue culture flask (~1 × 108
cells) as per the manufacturer's instructions using the Miniribosep extraction kit (Collaborative Biomedical Products, Bedford, MA). The
extracted RNAs were subjected to Northern blot analysis as described
previously (20). A 32P-randomly primed 1.5 kb
XhoI and XbaI fragment of the murine Glut 3 cDNA (21) (Oligolabeling kit, Amersham Pharmacia Biotech) served as
the probe. Interlane loading variability was standardized by
rehybridization of the stripped filters with a 32P-labeled
mouse -actin cDNA probe (22).
Protein Studies--
Thirty to fifty µg of either cellular
homogenate or extracted nuclear protein was solubulized in 50 mM Tris, pH 6.8, containing 2% SDS, and the protein
concentration was determined by the Bio-Rad dye-binding assay (23).
Western blot analysis was carried out as described previously (23). The
primary antibody consisted of an affinity-purified rabbit anti-mouse
Glut 3 IgG, which was generated against the keyhole limpet-linked
terminal 17 amino acids of the mouse Glut 3 protein. Following
characterization of tissue and isoform specificity of this antibody
(data not shown), we carried out incubations with protein samples
transferred to the nitrocellulose filters. The primary anti-mouse Glut
3 antibody was used at 1:500 dilution, and the incubation was carried
out at room temperature for 16 h. Mouse Glut 3 peptide (0.1 µg)
preabsorbed rabbit anti-mouse Glut 3 antibody served as the negative
control. To detect nuclear proteins, the rabbit anti-synthetic human
Sp1 peptide (amino acids 436-454), anti-synthetic human Sp3 (amino acids 676-695 in the C-terminal region) (Santa Cruz Biotechnology, Santa Cruz, CA), anti-rat cAMP response element-binding protein (Upstate Biotechnology, Inc., Lake Placid, NY), and anti-mouse c-Jun
(amino acids 247-263) (Santa Cruz Biotechnology) IgGs were used at a
1:500 dilution. The corresponding peptides (2 µg) (Santa Cruz
Biotechnology) were used to preabsorb and saturate the IgGs where
indicated. 125I-labeled goat anti-rabbit secondary antibody
(NEN Life Science Products; 50,000 cpm/sample) was used to detect the
primary antigen-antibody complex. Autoradiography of the filters was
carried out for optimal lengths of time to maintain linearity of the
signal.
Primer Extension Assay--
Primer extension was carried out as
described previously (24). An antisense oligonucleotide (Cruachem Inc.,
Dulles, VA) complementary to bp 299-320 of the murine Glut 3 mRNA
(CTTCGTTGTCCCCATGGTCCCA) was end-labeled with
[ -32P]ATP (DuPont) and T4 polynucleotide kinase.
~5 × 106 cpm (50 fmol) of the labeled
oligonucleotide and five µg of poly(A+) mRNA were
dissolved in 1 µl of the hybridization buffer (80% formamide, 0.4 M NaCl, 40 mM NaCl, 40 mM PIPES, pH
6.8, and 1 mM EDTA) at 95 °C for 10 min. Hybridization
between the mRNA and the labeled oligonucleotide was accomplished
for 16 h at 42 °C. Reverse transcription was initiated by
adding 30 units of avian myeloblastosis virus reverse transcriptase
(Promega, Madison, WI) to the mRNA/oligonucleotide mixture in 20 µl of a mixture consisting of 50 mM Tris, pH 8.3, 6 mM MgCl2, 40 mM KCl, 10 units of
RNasin, 0.625 mM dNTPs, and the reaction was carried out at 42 °C for 1 h. The primer-extended products were purified using Jetsorb (Genomed Inc., Research Triangle Park, NC) and separated on 8%
polyacrylamide gels.
To demonstrate that the transcription start site did not differ in the
Glut 3 5'-flanking sequence-luciferase fusion gene, primer extension
was carried out with mRNA extracted from N2A cells transfected with
the 203 to +305 bp Glut 3-Luc construct (Fig. 2A) and
32P-labeled luciferase gene-specific primer GL2
(5'-CTTTATGTTTTTGGCGTCTTCCA) (Promega).
RNase Protection Assay--
RNase protection assay was carried
out as per the manufacturer's instructions (Ambion, Austin, TX). A
440-bp fragment spanning from bp 203 to +237 of the mouse Glut 3 gene
was amplified by polymerase chain reaction and inserted into pGEM3z(f)
at KpnI and HindIII sites.
32P-Labeled antisense RNA probe was synthesized by the Sp6
polymerase and a riboprobe kit (Promega). About 50,000 cpm (~0.5
fmol) of gel-purified riboprobe was hybridized overnight at 45 °C to
5 µg of mRNA from N2A, HRP.1, and H19-7 cells in a hybridization buffer containing 80% formamide, 100 mM sodium citrate, pH
6.4, 300 mM sodium acetate, pH 6.4, and 1 mM
EDTA. The hybrid was digested with 200 µl of a 1:50 dilution of RNase
A (250 units/ml) and RNase T1 (10,000 units/ml) for 30 min at 37 °C
prior to analysis on a 5% polyacrylamide gel.
Isolation of the Murine Glut 3 Genomic Clone--
0.5 × 106 phage of a C57KSJ mouse genomic library was screened
with a 32P-labeled 1.5-kb mouse Glut 3 cDNA (21), and
two clones were isolated. Hybridization to a 32P-labeled
oligonucleotide complementary to the first 41 bp of the 5'-untranslated
region (5'-AGAGGTATCCAGCCAATGTTCTCGGCAGCAAGTGTTCCTC-3') and the bp
56-500 fragment of the mouse Glut 3 cDNA (21) identified one of
the two clones as containing the 11-kb genomic insert having the
5'-flanking region of the murine Glut 3 gene. Furthermore, partial
sequencing of this ~11-kb clone confirmed the identity with a
previously sequenced mouse Glut 3 genomic clone (GenBankTM
accession no. U11844), which we subsequently obtained from Takeda and
Bell.
Transient Transfection and Reporter Expression Assays--
A
~1.8-kb fragment of the mouse Glut 3 gene spanning the bp 1553 to
+237 region was amplified by polymerase chain reaction and subcloned
into an enhancerless and promoterless luciferase reporter
gene-containing vector (pGL2-basic; Promega). Subsequently, serial
5'-deletional mouse Glut 3-Luc fusion gene constructs were created by
using a polymerase chain reaction-based strategy employing primers
outlined in Table I. The sequence and
orientation of the individual clones was confirmed by the
dideoxynucleotide chain termination sequencing method (25). The
sequence information was managed using the MacVector version 5.0 sequence analysis program (Oxford Molecular Group, Campbell, CA).
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Table I
Primers used in polymerase chain reactions to amplify portions of
constructs used in the transient transfection experiments
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Transient transfection of cultured cells was carried out by the
liposome-mediated technique (26). Essentially, 5 µg of the pGL2-vector containing the different 5'-deletional DNA constructs was
incubated at room temperature for 30 min with Lipofectin (25 µl)
(Life Technologies, Inc.) and 200 µl of serum-free Dulbecco's modified Eagle's medium. After thorough washing with Dulbecco's modified Eagle's medium, the cells were exposed to this preincubated DNA-lipofectin complex. pRL-Tk plasmid DNA (thymidine kinase
promoter-driven Renilla luciferase, 0.5 µg; Promega) was
co-transfected with each individual transfectant to standardize the
results for transfection efficiency.
The luciferase reporter activity was assessed by the dual luciferase
assay (Promega). Briefly, 36-48 h post-transfection, the cells were
washed with phosphate-buffered saline and lysed using 0.5 ml of passive
lysis buffer (Promega). The supernatant upon centrifugation at 10,000 rpm for 10 min was stored at 70 °C until analysis. Twenty µl of
this cellular extract was mixed with 100 µl of the luciferase assay
buffer, and the luciferase activity was measured as light output (15 s)
in a Monolight 2010 luminometer (Analytical Luminescence, San Diego,
CA) (27). Subsequently, the Renilla luciferase activity was
estimated after the addition of 100 µl of the Stop and Glo reagent,
and the light output (15 s) was measured separately. The
Renilla-driven luciferase activity was used to standardize
the Glut 3 promoter-driven luciferase activity for transfection
efficiency. The corrected Glut 3 promoter-driven luciferase activity is
expressed as a percentage of the SV40 promoter-driven luciferase
activity that served as the positive control in every transfection
experiment.
Electromobility Shift Assay--
Nuclear extracts from the N2A,
H19-7, and HRP.1 cells were prepared as described by Wildeman et
al. (28). Routinely, 5 × 108 cells were
retrieved by a rubber policeman and suspended in 10 mM
Hepes, pH 7.8, 10 mM KCl, 1.5 mM
MgCl2, 0.5 mM dithiothreitol, and 0.5 mM phenylmethylsulfonyl fluoride at 4 °C. The cells were homogenized using an all glass Dounce homogenizer with pestle B. The
disruption was monitored microscopically, and the isolated nuclei were
collected as a pellet upon centrifugation at 10,000 rpm for 30 min. The
nuclear pellet was resuspended and incubated on ice for 15 min in four
volumes of a high salt buffer (20 mM Hepes, pH 7.9, 420 mM NaCl, 1.5 mM MgCl2, 0.5 mM dithiothreitol, 0.5 mM phenylmethylsulfonyl
fluoride, 25% glycerol) to extract the nuclear proteins. The extracted
nuclear proteins were collected as the supernatant after centrifugation
at 10,000 rpm for 30 min and precipitated with solid
(NH4)2SO4 (0.33 g/ml). The nuclear protein extract pellet was resuspended in a minimal volume of 10 mM Hepes (pH 7.9), 100 mM KCl, 1.5 mM MgCl2, 0.5 mM dithiothreitol, 0.5 mM phenylmethylsulfonyl fluoride, and 17% (v/v)
glycerol and dialyzed at 4 °C against 50 volumes of the 10 mM Hepes buffer. The nuclear proteins were separated from
the (NH4)2SO4 by centrifugation at
15,000 rpm for 15 min, and the supernatant was stored in aliquots at
70 °C. The concentration of the solubulized nuclear protein was
measured by the method of Bradford (23).
Synthesized double-stranded oligonucleotides were end-labeled with
[ -32P]ATP and T4 polynucleotide kinase. Approximately
6 fmol of the labeled DNA oligoprobe was added to 5 µg of nuclear
extract in a final volume of 20 µl containing 1 µg of poly(dI-dC),
10 mM Tris-HCl (pH 7.5), 50 mM NaCl, 0.5 mM EDTA, 1 mM MgCl2, 4% glycerol, and 1 mM dithiothreitol and incubated for 15 min at room
temperature. Subsequently, the DNA-protein complexes were separated
from the free DNA by electrophoresis through a 5% nondenaturing
polyacrylamide gel in a 90 mM Tris borate, 2 mM
EDTA buffer (29). The gels were dried and subjected to autoradiography
in the presence of intensifying screens (DuPont) at 80 °C.
Competition experiments included the addition of a 10-1000-fold excess
of unlabeled DNA oligonucleotides, while supershift analysis included
the addition of 2 µg of the respective antibody to the reaction mix
for 15 min. In certain reactions, mutant oligonucleotides with
sequences containing the modified Sp1 binding site of the mouse Glut 3 gene were synthesized and used in mobility shift assays (Table
II).
Okadaic Acid Experiments--
N2A cell nuclear extracts (5 µg)
and human recombinant Sp1 (1 footprint unit) were incubated together or
separately with the radiolabeled bp 149 to 124 region of the mouse
Glut 3 gene prior to analysis by the mobility shift assays. In another
set of experiments, the N2A nuclear extracts were incubated with
okadaic acid (50, 100, or 200 nM) (Life Technologies, Inc.)
for 5 min prior to the addition of recombinant human Sp1 (0.25 footprint unit) followed by the mobility shift assay.
DNase I Footprinting Analysis--
The linearized bp 203 to
+320 of the 5'-flanking region of the mouse Glut 3 gene was end-labeled
with [ -32P]ATP and T4 polynucleotide kinase.
Approximately 50,000 cpm (0.5 fmol) of the end-labeled mouse Glut 3 probe was preincubated with 25-30 µg of the nuclear protein extract
in the mobility shift buffer (10 mM Tris, pH 7.5, 50 mM NaCl, 1 mM MgCl2, 0.5 mM EDTA, 1 mM dithiothreitol, 4% glycerol),
and the DNA-protein complex was subjected to partial DNase I digestion
(25 ng) (30). The G and G + A ladders were generated by the
Maxam-Gilbert chemical sequencing method (31).
Co-transfection Experiments in the Drosophila Schneider
Cells--
Co-transfections were carried out in Drosophila
Schneider cells (American type culture Collection), which were
maintained at room temperature in modified Schneider's
Drosophila medium (Life Technologies) supplemented with 10%
fetal bovine serum and antibiotics. Cells were seeded at 2 × 106/60-mm culture dish immediately prior to transfection.
DNAs were transfected into cells by the liposome-mediated transfection
(26) using 2 µg of the target DNA ( 203G3-Luc or 177G3-Luc) or the mutated target DNA ( 203Sp1-M or 177Sp1-M) in the presence or absence of varying concentrations (0.1-2-µg range) of the effector DNA (pActSp1 (32) or pPacUSp3 (32)). Successful transfection of
expression vectors was confirmed by detecting the Sp1 and Sp3 proteins
in cell lysates by Western blot analysis. The target DNA constructs
were also transfected with the vectors pAct (32) and pPacU (32) devoid
of Sp1 and Sp3 coding sequences as the negative controls. Following
incubation of these cells as described previously, the cells were
harvested, and luciferase activity was determined (27). Luciferase
activity was normalized to -galactosidase expression driven by a
Rous sarcoma viral promoter (RSV- -gal) to correct for transfection
efficiency. -Galactosidase activity was measured by a commercially
available kit (Promega).
Data Analysis--
All data are depicted as mean ± S.E.
Differences between two groups were validated by Student's
t test, while differences between more than two groups were
determined by one way analysis of variance and intergroup differences
were validated by Neuman-Kuel's test.
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RESULTS |
Glut 3 was abundantly expressed (mRNA and protein) in the
mouse neuroblastoma (N2A) and the placental trophoblastic (HRP.1) cells
with minimal amounts detected in H19-7 immortalized embryonic rat
hippocampal neural cells. In contrast, no Glut 3 expression was noted
in the COS-7 cells (Fig. 1, A
and B).

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Fig. 1.
Expression of Glut 3. A, a
representative Western blot showing the 50-kDa Glut 3 protein in 50 µg of N2A (lane 1), H19-7 (lanes
2 and 2a), HRP.1 (lane 3),
and COS-7 (lanes 4 and 4a) cellular
extracts. The autoradiograph containing lanes 1-4 was
exposed for 3 days, while lanes 2a and 4a were
exposed for 1 week. B, a representative Northern blot
demonstrating a 4.1-kb Glut 3 mRNA band (upper
panel) and a 1.8-kb -actin mRNA band
(lower panel) in 5 µg of
poly(A+)-enriched RNA from N2A (lane
1), H19-7 (lane 2), HRP.1
(lane 3), and COS-7 (lane
4) cells. C, primer extension analysis
demonstrating a 320-bp major reverse transcribed and extended product
(arrow) obtained from 5 µg of mRNA obtained from N2A
(lane 2), H19-7 (lane 3),
and HRP.1 (lane 4) cells. The oligonucleotide
used was complementary to bp 299-320 of the mouse Glut 3 gene.
Radiolabeled pGEM markers (lane 1) were employed
for size determination. D, RNase protection assay
demonstrating the end-labeled pGEM DNA markers (lane
1). A 237-bp RNase-protected fragment is present in N2A
(lane 4), HRP.1 (lane 5),
and H19-7 (lane 6) cells along with the
completely digested (lanes 2 and 3)
and undigested 440-bp antisense riboprobe (lane
7). E, primer extension analysis demonstrating a
360-bp major reverse transcribed and extended product obtained from 5 µg of mRNA obtained from untransfected native N2A cells
(lane 2), which served as the negative control,
and N2A cells that were transiently transfected with the 203G3-Luc
DNA construct (lane 3). The oligonucleotide used
in both cases was complementary to the 5'-most end of the luciferase
gene. Radiolabeled DNA markers are shown in lane
1.
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Primer extension studies determined the major transcription start site
for mouse Glut 3 to be 305 nucleotides 5' to the ATG translational
codon (Fig. 1C). The minor extended products are characteristic of the infidelity of a TATA-less GC-rich promoter. In
addition, minor size differences were noted in the major extended product between the three cell lines, namely the N2A, H19-7, and HRP.1.
The transcription start site was confirmed in all three cell lines by
the RNase protection assay, which revealed a 237-bp protected fragment
of the 440-bp probe ( 203 to +237 bp), which straddled the
transcription start site (Fig. 1D). Sequence analysis of the
5'-untranslated region between the identified transcriptional start
site (+1) and the ATG translational start codon (+305 bp) revealed the
presence of two additional out of frame ATG codons at the +14 and 177
bp regions (Fig. 2A). The
predicted RNA secondary structure (MacDNASIS Pro version 3.5 Hitachi Software; Engineering America Ltd., San Bruno, CA) revealed the
partial sequestration of these two ATG codons into RNA stem structures,
making them inaccessible for translation. In contrast, the bona
fide ATG was located in a region that will not form a stable RNA
stem structure akin to that seen with the mouse Glut 1 (15). This
observation and the presence of GGACC, which is closely related to the
Kozak consensus sequence (GCC(A/G)CC) (33) 5' to the authentic in frame
ATG codon (+305 bp) in Glut 3 attests to the functional nature of this
ATG translational start site, with the other two ATG codons in the
5'-untranslated region being nonfunctional (Fig. 2A).

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Fig. 2.
Transient transfection assays.
A, top panel, sequence information of
the 5'-flanking region of the mouse Glut 3 (bp 203 to +320) gene. The
major transcription start site is shown as +1, and the Sp1 DNA-binding
site is underlined and in boldface
type. The four AP1 sites are italicized.
Bottom panel, a schematic representation of the
putative binding sites for DNA-binding proteins in the 5'-flanking
region of the mouse Glut 3 gene extending from bp 203 to +305. The bp
203 to +305 region was analyzed for potential putative protein
binding motifs by the MacVector software (Oxford Molecular Group,
Campbell, CA). These sites are presented in reference to the major
transcriptional start site, which is shown as +1. The filled
boxes represent consensus AP1-binding sites, while the
single Sp1 binding site is shown as an open box.
B, sequential 5'-deletions created by polymerase chain
reaction using primers depicted in Table I followed by subcloning these
deletions 5' to the enhancerless and promoterless luciferase gene
(pGL2-B). The luciferase activity in N2A cells following correction for
transfection efficiency (pRL-Tk co-transfections) was expressed as a
percentage of the luciferase gene activity driven by the SV40 promoter
(positive control) and is depicted as the mean ± S.E. of three
independent experiments performed in duplicate. The arrows
indicate the orientation of Glut 3 DNA relative to the direction of
Glut 3 gene transcription; exon 1 is indicated by the
stippling and the luciferase gene by the
crisscross pattern. *, p < 0.05 when compared with background (pGL2-basic); +, p < 0.05 when compared with DNA constructs 203G3-Luc and 104G3-Luc.
C, sequential 5'-deletions created bypolymerase chain reaction using primers depicted in Table I
followed by subcloning these deletions 5' to the enhancerless and
promoterless luciferase gene (pGL2-B) were transfected into COS-7,
H19-7, and HRP.1 cells. The luciferase activity in the three cell types
following correction for transfection efficiency (pRL-Tk
co-transfections) was expressed as a percentage of the luciferase gene
activity driven by the SV40 promoter (positive control) and is depicted
as mean ± S.E. of three independent experiments performed in
duplicate. *, p < 0.05 when compared with background
(pGL2-basic); #, p < 0.05 when compared with DNA
constructs 203G3-Luc and 104G3-Luc. D, 203Sp1-M and
177Sp1-M DNA constructs were transiently transfected into N2A cells,
and the luciferase gene activity was corrected for transfection
efficiency (pRL-Tk-Luc cotransfections). For comparison, the
203G3-Luc and 177G3-Luc DNA constructs have been included. The
results are depicted as mean ± S.E. of six independent
experiments performed in duplicate. *, p < 0.05; **,
p < 0.001 when compared with their respective
nonmutated DNA construct. Similar results were noted in the HRP.1 and
H19-7 cells as well. Filled bars, deletions;
open bars, mutations.
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The functional role of the 5'-flanking region in the regulation of
transcription of the Glut 3 gene was assessed by its ability to drive
expression of the luciferase reporter gene. A 440-bp fragment of the
5'-flanking region of the Glut 3 gene, devoid of the exon 1-intron 1 junction was inserted immediately upstream of the luciferase reporter
gene contained in the promoterless expression vector pGL2basic. This
fusion construct ( 203G3-Luc) exhibited significant luciferase
activity when transiently transfected into the N2A, HRP.1, and H19-7
cells. We then confirmed the transcriptional start site to be similar
in the transiently transfected mouse Glut 3-luciferase fusion
constructs to that of endogenous mouse Glut 3 (Fig. 1E) by
primer extension assay. Computer analysis of the bp 203 to +237
fragment of the mouse Glut 3 gene revealed an array of putative nuclear
factor binding sites, which include four AP1 sites, a single Sp1
binding site, four CAAT boxes, and three CTF/NF1 binding sites (Fig.
2A). No putative TATA box was detected 5' to the
transcription start site.
Whereas the 203G3-Luc fusion construct ( 203 to +237 bp)
demonstrated promoter activity, deletion of 26 nucleotides from bp
203 to 177 created the 177G3-Luc fusion construct ( 177 to +237
bp), which led to a significant decline in the transcriptional activity. However, this loss of transcriptional activity was reversed in the 104G3-Luc ( 104 to +237 bp) construct, thereby indicating that the bp 177 to 104 region of the mouse Glut 3 gene possessed repressor function (Fig. 2B). Fig. 2C depicts the
results of transient transfection experiments using the same deletional
constructs in H19-7, HRP.1, and COS-7 cell lines. The promoter activity
and repressor function carrying DNA sequences were identical to that noted in N2A, with the existence of minor inter-cell type variability in the level of luciferase activity observed, with high levels of
activation noted in the N2A and HRP.1 cells and lower activity in the
rat embryonic hippocampal H19-7 cells. These results paralleled the
cell-specific levels of Glut 3 mRNA and protein (Fig. 1,
A and B).
Computer analysis of the bp 177 to 104 nucleotide sequence
revealed the presence of a single consensus binding site for Sp1 (bp
137 to 130). A role for factors binding the Sp1-binding site in
suppressing mouse Glut 3 promoter activity was revealed by observing a
restoration of the transcriptional activity in the absence of the bp
203 to 177 region with a mutated Sp1-binding region ( 177Sp1-M).
However, the inclusion of the bp 203 to 177 region along with a
mutant Sp1 binding region ( 203Sp1-M) demonstrated the opposite
effect, i.e. a 50% suppression in Glut 3 transcription (Fig. 2D). These observations collectively confirm that the
Sp1-binding region possesses a suppressive function in Glut 3 gene
transcription in the absence of the activating bp 203 to 177 DNA
elements, while elements in the bp 203 to 177 region activate Glut
3 transcription.
To identify and characterize potential protein binding activity
associated with the bp 137 to 130 region, an electromobility shift
assay was used. An oligonucleotide encompassing the putative Sp1
binding sequence of the mouse Glut 3 gene (bp 149 to 124) was used
as the probe in the mobility shift assay. Nuclear extracts from the
three cell types (i.e. H19-7, N2A, and HRP.1) led to three
band shifts (Fig. 3A).
Competition studies in the presence of unlabeled oligonucleotides
corresponding to known consensus DNA-binding regions revealed specific
displacement with the bp 149 to 124 region of the mouse Glut 3 gene
and the Sp1 consensus sequence (Fig. 3B). A
dose-dependent displacement of the band shifts with the
unlabeled bp 149 to 124 region of the mouse Glut 3 established a
relatively high affinity binding of nuclear factor(s) to this
region (Fig. 3C). No such displacement occurred with an
excess of unlabeled CTF/NF1, AP-1, cAMP response element, OCT-1, TFIID,
GRE, and NF- B consensus sequences (Fig. 3B).

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Fig. 3.
Mobility gel shift assays. A,
32P-labeled bp 149 to 124 Glut 3 oligonucleotide
(lane 1) was incubated with nuclear extracts (5 µg) prepared from indicated cell type (lanes
2-4) and electrophoresed as described under "Experimental
Procedures." The bands representing specific DNA-protein complexes
are indicated as 1 and 2. B,
32P-labeled bp 149 to 124 Glut 3 oligonucleotide
(lane 1) was incubated with nuclear extracts (5 µg) prepared from N2A cells (lanes 2-11) and
electrophoresed as described under "Experimental Procedures."
Competition between labeled and unlabeled specific oligonucleotides
(lane 3) or oligonucleotides containing
DNA-binding sites for known DNA-binding proteins (lanes
4-11) at molar excess ratios of 100 is shown. The bands
representing specific DNA-protein complexes are indicated as
1, 2, and 3. C,
32P-labeled bp 149 to 124 Glut 3 oligonucleotide was
incubated with nuclear extracts (5 µg) prepared from N2A cells
(lanes 1-3) and electrophoresed as described
under "Experimental Procedures." Competition between labeled and
unlabeled specific oligonucleotides at molar excess ratios of 1 (lane 1), 10 (lane 2), and
100 (lane 3) is shown.
|
|
Since the Sp1 consensus sequence is known to bind Sp1 and other related
proteins, particularly Sp3, we attempted to further confirm the
identity of the protein(s) that bound the bp 149 to 124 sequence by
supershift assays. While anti-Sp1 antibody supershifted upper band
shift (1; Fig. 4), the
anti-Sp3 antibody led to a supershift of the lower band shift
(2; Fig. 4) in all three cell types. These reactions were
specific, since there was no shift in the presence of either
corresponding peptide preabsorbed antibodies or anti-cAMP response
element-binding protein or anti-c-Jun/AP1 antibodies (Fig. 4). When
mutant oligonucleotides in which the Sp1 binding site was altered were
used, such band shifts were not observed. Anti-Sp1, anti-Sp3, anti-cAMP
response element-binding protein, or anti-c-Jun/AP1 antibodies failed
to demonstrate any supershifts in this case (data not shown).

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Fig. 4.
Mobility supershift assays. Nuclear
extracts (5 µg) from the N2A (lanes 1-6), HRP.1
(lanes 7-9), and H19-7 (lanes 10-12) cells were
treated with the radiolabeled bp 149 to 124 Glut 3 oligoprobe
(lanes 1, 7, and 10) alone
or in the presence of the anti-Sp1 IgG (lanes 2,
8, and 11). The anti-Sp1 antibody caused a
supershift of the upper band shift (lanes 2,
8, and 11), while the anti-Sp3 antibody led to a
supershift of the lower band shift (lanes 3,
9, and 12). No supershift was noted in the
presence of the anti-cAMP response element-binding protein
(lane 4), anti-c-Jun (lane
5) IgGs, the Sp1 peptide preabsorbed anti-Sp1 antibody
(lane 6), or the Sp3 peptide preabsorbed anti-Sp3
antibody (data not shown).
|
|
The DNA binding ability of Sp1 present in the N2A nuclear extracts was
compared with that of the human recombinant Sp1 by mobility shift
assays. While the Sp1 present in the N2A nucleus demonstrated distinct
band shifts and a supershift in the presence of the anti-Sp1 IgG, the
recombinant Sp1 did not bind the Sp1-binding site of the mouse Glut 3 gene at all. In contrast, the addition of recombinant Sp1 along with
N2A nuclear extracts enhanced the density of the band shifts (Fig.
5A) that were noted with N2A nuclear extracts alone. Using the Sp1 consensus DNA sequence as the
probe, human recombinant Sp1 and N2A nuclear extracts demonstrated DNA
binding as evidenced by band shifts. The added presence of recombinant
Sp1 and N2A extracts demonstrated maximal binding to the consensus
sequence (Fig. 5B). Mobility shift assays with the
radiolabeled 149 to 124 bp region of the mouse Glut 3 gene in the
presence of recombinant Sp1 and N2A nuclear extracts when incubated
with okadaic acid (a phosphatase 2A inhibitor) demonstrated a
dose-dependent decline in the density of the band shifts,
with maximal inhibition observed at 200 nM (Fig.
5C). These results support the necessity of Sp1
dephosphorylation for Glut 3 DNA binding.

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Fig. 5.
Sp1 binding mobility shift assays.
A, mobility shift assay (left panel)
using the bp 149 to 124 region of the mouse Glut 3 gene as the
oligoprobe alone (lane 1), incubated with the N2A
nuclear extract (5 µg) in the absence (lane 2)
or presence (lane 3) of the anti-Sp1 IgG,
incubated with the recombinant human Sp1 protein (1 footprintingunit) in the absence (lane 4) or presence
of the anti-Sp1 IgG (lane 5), or incubated with a
combination of the N2A nuclear extract and the recombinant human Sp1
(lane 6). Densitometric quantitation of the
DNA-protein complex seen as band shifts is depicted on the
right. *, p < 0.05 when compared with shift
seen with N2A alone. B, mobility shift assay
(left) using the Sp1 consensus sequence as the probe alone
(lane 1), incubated with the recombinant human
Sp1 (lane 2), incubated with the nuclear extracts
from N2A cells (5 µg) (lane 3), or incubated
with a combination of recombinant human Sp1 (1 footprinting unit) and
the N2A nuclear extract (5 µg) (lane 4). The
right part demonstrates densitometric
quantitation of the Sp1-bound complex seen as a band shift. *,
p < 0.05 versus N2A-induced band shift.
C, mobility shift assay (left panel)
using the bp 149 to 124 region of the mouse Glut 3 as the probe
(lane 1), incubated with the N2A nuclear extract
(5 µg) along with 0 (lane 2), 50 (lane 3), 100 (lane 4), and
200 nM (lane 5) okadaic acid, and
incubated with a combination of the N2A nuclear extract (5 µg) and
the recombinant Sp1 (0.25 footprinting unit) in the absence of okadaic
acid (lane 6). Right, densitometric
quantitation of the DNA-bound complex seen as the band shift. *,
p < 0.05 versus the band shift seen with
the N2A nuclear extract alone.
|
|
Further DNase I footprinting assays confirmed that the Sp1 sequence of
the mouse Glut 3 gene was protected from partial DNase I digestion by
N2A nuclear extracts (Fig.
6A). Western blots with nuclear protein extracts from all three cell types revealed the presence of the 95-105-kDa Sp1 protein (Fig. 6B) and the
97- and 67-kDa Sp3 proteins (Fig. 6B).

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Fig. 6.
A, DNase I footprinting analysis.
Radiolabeled bp 245 to +36 Glut 3 oligoprobe was incubated with
nuclear extracts (5 µg) obtained from the N2A cells or bovine serum
albumin (5 µg) prior to DNase I (25 ng) digestion. Lanes
G and G/A represent sequencing of the probe by
the Maxam and Gilbert method (45). The N2A nuclear extract proteins
protected the oligoprobe from DNase I digestion in the region that
contains the Sp1-binding site and the sequence that is 3'- to this
site. Bovine serum albumin (BSA) was used instead of the N2A
nuclear extract as a negative control. B, Western blot
analysis of nuclear extracts. Representative Western blots in the
top part demonstrate a single Sp1 protein band spanning from
95 to 105 kDa in nuclear extracts (30 µg) obtained from the N2A
(lane 1), HRP.1 (lane 2),
and H19-7 (lane 3) cells. The bottom
part demonstrates the two Sp3 bands (97 and 67 kDa) in nuclear
extracts (30 µg) from the N2A (lane 1), HRP.1
(lane 2), and H19-7 (lane
3) cells. C, co-transfection assays using
203G3-Luc ( ) and 177G3-Luc ( ) in Drosophila
Schneider cells. Co-transfection is shown of the 203G3-Luc or
177G3-Luc DNA construct and 100 ng of the pActSp1 or pPacUSp3
expression vector into the SL2 cells. The results are expressed as a
percentage of the luciferase activity generated by the
203G3-Luc/ 177G3-Luc transfection alone (seen as a dotted
line at 100%). *, p < 0.01 when compared
with the 203G3-Luc or 177G3-Luc activity, respectively.
D, co-transfection assays using 203Sp1-M ( ) and
177Sp1-M ( ) in Drosophila Schneider cells.
Co-transfection is shown of the 203Sp1-M or 177Sp1-M DNA construct
and 100 ng of pActSp1 or pPacUSp3 expression vector into the SL2 cells.
The results are expressed as a percentage of the luciferase activity
generated by the 203Sp1-M/ 177Sp1-M transfection alone (seen as a
dotted line at 100%). *, p < 0.01 when compared with the 203Sp1-M or 177Sp1-M activity,
respectively.
|
|
Co-transfection experiments using target DNA 203G3-Luc or 177G3-Luc
constructs yielded divergent results in the case of Sp1 and similar
results in the case of Sp3. When the effector DNA encoding Sp1 was used
with the 203G3-Luc, a suppression of Glut 3 transcription in
Drosophila Schneider cells was noted, while no additional
change was observed with the 177G3-Luc construct. These results
indicate that the suppressive effect of Sp1 is dependent on the
presence of putative trans-acting factors interacting with the DNA
sequence between bp 203 and 177. In contrast, in the presence of
the Sp3-encoding sequences, an activation of the 203G3-Luc and
177G3-Luc target DNA transcription occurred (Fig. 6C),
suggesting that for Sp3 to act as an activator the bp 203 to 177
sequence is not essential. Co-transfection experiments with target DNA containing mutations of the Sp1-binding site ( 203Sp1-M or 177Sp1-M) in the presence of effector DNA encoding Sp1 led to no modification of
the basal transcriptional activity, confirming that Sp1 acts via the
Sp1 binding sequence. In contrast, effector DNA encoding Sp3 did not
further alter the transcriptional activity of the 177Sp1-M target DNA
but led to a 3-fold increase in transcription with the 203Sp1-M DNA
construct (Fig. 6D). These results indicate that the
activity of Sp3 is dependent on the trans-acting factor interacting
with the DNA sequence between bp 203 and 177, that Sp3 does not act
through the Sp1 binding site, and that interaction with Sp1 is not
essential for Sp3's activity.
 |
DISCUSSION |
In the present study, we have identified certain cis-elements
involved in activating the Glut 3 murine gene; these elements extend
from 203 to +237. Similar to other genes that are devoid of a TATA
box in the conventional site, the murine Glut 3 demonstrates GC-rich
sequences in the regulatory region (34-36). The sequences between bp
203 and 177 demonstrate gene transcriptional activity, and so did
the sequences between bp 103 and +237.
Amid the mouse Glut 3 gene transcriptional activation domain lies a
cis-element that exhibits suppression of gene transcription. This
repressor domain has been identified to be the only Sp1-binding region
present within 130 bp from the transcription start site. Sp1, the
ubiquitous nuclear factor that consists of zinc finger domains that
bind guanine-rich DNA-binding sites (5'-GGGGCGGGGC-3') (37, 38),
transactivates gene transcription in most proliferating cells examined,
by acting as a promoter-selective transcription initiation factor
in vitro (34-36, 39-41). It was initially identified as a
factor from HeLa cells that selectively activates in vitro transcription from the SV40 early promoter (42) and binds to the
multiple GC boxes in the SV40. While suppression of Sp1 activation by
forming inactive non-DNA-binding complexes with other nuclear factors
such as Sp1-I (43) or p107 (44) or disruption of Sp1 binding (45) has
been reported, Sp1 has recently also been noted to be involved in the
suppression of gene transcription. Direct binding of Sp1 to the Sp1
DNA-binding region in itself has also been observed to suppress gene
transcription. Examples of Sp1-directed gene suppression include the
human adenine nucleotide translocase 2 gene in human JEG3, HeLa, and
mouse NIH3T3 cells (46), the murine V 1.1 T cell receptor (47), the
-globin gene upon site-specific cytosine methylation in murine
erythroleukemia cells (48), and smooth muscle myosin heavy chain gene
in rat aortic smooth muscle cells (49). All of these genes, where
transcriptional activity is suppressed by Sp1, were examined in
vitro in proliferating cells that had not fully differentiated. In
the present study, similar to the myosin heavy chain gene, suppression
of the mouse Glut 3 gene is mediated by the Sp1-DNA binding site, which
is situated between two gene-activating domains (49).
Recent studies in Drosophila SL2 cells that possess the
Drosophila genes but not the mammalian Sp1-related proteins,
demonstrated Sp1 to activate transfected genes, while Sp3, by competing
for DNA binding with Sp1, brought about the suppression of genes (50). Further, the amino-terminal region of Sp3 tethered to a promoter DNA by
connecting to a heterologous DNA-binding protein domain was observed to
repress transcriptional activation by different positive regulators
(51). Moreover, Sp3 targeted to a promoter-proximal RNA sequence acted
as a transcriptional repressor (51). Sp1 and Sp3 were demonstrated to
interact with each other in the case of the neuronal nicotinic
acetylcholine receptor 4 subunit gene and regulate gene
transcription (32). Thus, it appears that while Sp1 can directly
suppress gene transcription by DNA binding (46, 48, 49), Sp3, by
competing for Sp1 binding or by interacting with other nuclear factors,
leads to repression of gene transcription (52, 53). In contrast, in the
case of the mouse Glut 3 gene in Drosophila cells, Sp1
represses, while Sp3 activates, transcription. Both transcription
factors bind the Sp1-binding site directly in vitro;
however, our studies involving the constructs containing mutations of
the Sp1-binding site indicate that the Sp1 binding site is essential
for Sp1's but not for Sp3's functional activity. Our studies also
indicate that interaction with nuclear factors that bind the upstream
sequences (bp 203 to 177) appears necessary for the Sp1-mediated
repression and Sp3-mediated activation of the mouse Glut 3 gene
transcription. Whether a similar interaction and function exist in the
neurons and trophoblasts is unknown. Depending upon the levels of
endogenous Sp1 versus Sp3, Glut 3 transcription can be
modified. Since transient transfection with the bp 177 bp to +1
region of Glut 3 in neuroblasts and trophoblasts reveals
transcriptional suppression, Sp1 appears to exert a dominant effect in
these cell types.
While Sp1 and Sp3 are ubiquitous nuclear factors, the differences in
the level of expression during different stages of development (54, 55)
or in varying cell types (55) along with specific post-translational
modifications (56) are responsible for altering gene transcription in a
development-specific and cell-specific manner. In the murine brain, Sp1
is expressed in the mature motor neurons, in the choroid plexus, in the
granular layer of the cerebellum, and in oligodendrocytes within the
white matter. Since the brain cellular distribution of Sp1 is not
limited to Glut 3-expressing neurons, Sp1-mediated transcriptional
modification by itself does not explain the cell specificity of Glut 3 expression (55). In contrast, in the murine embryo, Sp1 is expressed in
the neural tissue and the giant trophoblasts of the placenta (55).
Levels of Sp1 mRNA in cerebral and cerebellar cortex reveal higher
levels immediately after birth with a nadir around day 11-20 postnatal age (55). This developmental expression pattern reciprocates the
postnatal day 14 to 21 increase in Glut 3 expression, which is noted in
negligible amounts prior to this age (3, 57). Thus, it is feasible that
Sp1 represses Glut 3 in neuronal cells during the different stages of
development.
Sp1 null mutant mice were observed to demonstrate development beyond
the blastocyst stage until the day 9.5-10 embryonic stage. While no
specific cellular defect was phenotypically observed, the embryos at
this stage were considerably smaller than the wild type mice (58) with
an arrest in development prior to the appearance of the brain. Thus, it
appears that Sp1 either by itself or in conjunction with other nuclear
factors (59-61) may cause Glut 3 gene repression in the embryonic
phases of development.
In addition to playing a role in cell differentiation, Sp1 has
previously been observed to mediate the effect of glucose-induced transcription of certain glucose-sensitive genes, namely acetyl-CoA carboxylase (62). Similarly, dephosphorylation of Sp1 appears to be
essential in enhancing its DNA binding ability to the
glucose-responsive acetyl-CoA carboxylase gene (56). In addition, Glut
3 expression both in neurons and trophoblasts has been demonstrated to
be glucose-responsive (6-8, 11). Our study demonstrates the need for
dephosphorylation of Sp1 or another yet to be determined accessory
protein to bring about Glut 3 DNA binding. Whether the glucose
responsiveness of the Glut 3 gene expression is mediated by
dephosphorylation of either Sp1 or Sp3 is unknown and requires
investigation. Further, we have presented evidence suggestive of
Sp1/Sp3 interacting with other nuclear factors that bind upstream DNA
and influence transcription of Glut 3. The nature of these unknown
nuclear factors and the actual nature of interaction between these
factors and the Sp1/Sp3 proteins will provide insight into the
activation of the Glut 3 gene expression and form the basis of future
investigations.
In summary, we have demonstrated the binding of nuclear factors Sp1 and
Sp3 to the mouse Glut 3 gene with Sp1-mediated suppression and
Sp3-mediated activation of Glut 3 transcription in neuroblasts and
trophoblasts. These are the first such investigations, thereby setting
the stage for future investigations in determining the interaction
between Sp1/Sp3 and other Glut 3 gene transactivating nuclear factors,
and further resolving the role of Sp1 and/or Sp3 in modifying Glut 3 expression during normal development and in disease states.
 |
ACKNOWLEDGEMENTS |
We thank J. Takeda and G. I. Bell
(Howard Hughes Institute, University of Chicago, Chicago, IL) for
kindly providing the mouse Glut 3 genomic and cDNA clones and Drs.
Julie DeLoia (University of Pittsburgh) for the mouse -actin
cDNA, Eva Eves (The Ben May Institute, University of Chicago) for
the H19-7 cell line, Mike Soares (University of Kansas Medical Center,
Kansas City, KS) for the HRP.1 cell line, Frederick Fiedorek Jr.
(University of North Carolina) for the murine genomic library, Ed Seto
(University of South Florida, Tampa, FL) for the Sp1 expression vector
(pActSp1), and Guntram Suske (Philipps-Universitat, Marburg, Germany)
for the Sp3 expression vector (pPacUSp3).
 |
FOOTNOTES |
*
This work was supported by National Institutes of Health
Grants HD33997 and HD25024 and the Twenty-five Club Neonatal Research Funds, Magee-Womens Hospital (Pittsburgh, PA).The costs of publication of this
article were defrayed in part by the
payment of page charges. The article
must therefore be hereby marked
"advertisement" in accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
¶
To whom all correspondence should be addressed: Dept. of
Pediatrics, Magee-Womens Hospital, 300 Halket St., Pittsburgh, PA 15213-3180. Tel.: 412-641-4110; Fax: 412-641-1844; E-mail:
sdevaskar{at}mail.magee.edu.
The abbreviations used are:
Glut, glucose
transporter(s); bp, base pair(s); kb, kilobase pair(s).
 |
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