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J Biol Chem, Vol. 273, Issue 42, 27565-27572, October 16, 1998
From the Department of Biological Chemistry, Johns Hopkins
University School of Medicine, Baltimore, Maryland 21205
Aquaporin water channel proteins mediate the
transport of water across cell membranes in numerous species. The
Saccharomyces genome data base contains an open reading
frame (here designated AQY1) that encodes a protein with
strong homology to aquaporins. AQY1 from laboratory and
wild-type strains of Saccharomyces were expressed in
Xenopus oocytes to determine the coefficients of osmotic
water permeability (Pf). Oocytes injected with wild-type AQY1 cRNAs exhibit high Pf values, whereas
oocytes injected with AQY1 cRNAs from laboratory strains
exhibit low Pf values and have reduced levels of Aqy1p due
to two amino acid substitutions. When the AQY1 gene was
deleted from a wild-type yeast and cells were cultured in
vitro with cycled hypo-osmolar or hyper-osmolar stresses, the
AQY1 null yeast showed significantly improved viability
when compared with the parental wild-type strain. We conclude that Saccharomyces cerevisiae contains at least one aquaporin
gene, but it is not functional in laboratory strains due to apparent negative selection pressures resulting from in vitro
methods.
Aquaporin water channel proteins have been characterized in
animals, plants, and insects and are composed of two subgroups; one is
permeable only to water (orthodox aquaporins) and a second is permeable
to water, glycerol, and other small uncharged molecules (aquaglyceroporins) (for review, see Ref. 1). The three-dimensional structure of human red cell AQP1 at 6 Å resolution revealed the putative aqueous pore (2); however, the structure-function relationships and the physiological roles of other members of the
aquaporin family are still poorly understood (for review, see Ref.
3).
Aquaporins have more recently been recognized in bacteria and other
microorganisms where their physiological roles are now being explored.
Dictyostelium discoideum contains wacA, a related gene with a developmentally regulated pattern of expression; however, disruption of the gene did not reveal phenotypic differences in spore
formation or osmotic challenge (4). In addition to glpF, the
well recognized glycerol facilitator, Escherichia coli
contains aqpZ, a second related gene with a monocistronic
organization (5) encoding a functionally defined aquaporin (6). When a
wild-type E. coli parental strain and an aqpZ
null mutant were directly compared, the latter showed reduced growth
when cultured in hypo-osmolar medium and under conditions of maximum
growth rate (7). A highly related gene, smpX, has been
identified in Synechocystis (8), but its function and null
phenotype have not been defined.
Because of powerful genetic and molecular approaches,
Saccharomyces cerevisiae has been extensively used for
studies of osmoregulation (9) and thus may be a good microorganism for
studies of possible physiological roles of aquaporins. The S. cerevisiae genome (10) is now accessible through the
Saccharomyces genomic data base and has been found to
contain open reading frames
(ORFs)1 related to the
aquaporins (11). FPS1 has been characterized previously as a
glycerol facilitator homolog (12, 13), and the deduced amino acid
sequence of a second ORF, YFL054, is highly homologous (Fig.
1). Additional ORFs were found in the genome with DNA sequences more
closely related to aquaporin water channels than to bacterial glycerol
facilitators or mammalian aquaglyceroporins (Fig. 1). The ORF
YPR192 is located on chromosome XVI (here designated AQY1 for aquaporin from yeast). The contiguous ORFs YLL052
and YLL053 reside on chromosome XII and may correspond to fragments of
an aquaporin gene (here designated AQY2).
Laboratory yeast strains are the result of interbreeding wild-type
S. cerevisiae and related species, as well as extensive and
sometimes incompletely documented growth selection and genetic modifications of the initial strain (14). Many laboratory strains of
S. cerevisiae were derived from the parental strain, S288C. For example, the strains used for the European Union Yeast Genome Sequencing Program (Saccharomyces genomic data base) were
isogenic to S288C (10, 15, 16) but may contain genetic modifications induced by selection, growth, and storage conditions. To explore the
potential significance of aquaporins in microorganisms, we have
genetically evaluated the putative water channel gene AQY1 from S. cerevisiae, functionally characterized its water
transport capacities, and directly evaluated the null phenotype. Our
studies reveal that
wild-type2 and laboratory
strains contain coding differences within AQY1 that result
in marked alterations of function.
Yeast Strains and Culture Conditions--
The yeast strains used
in this study are listed in Table I. Cells were routinely grown in YPD
media (1% yeast extract and 2% bactopeptone (Difco) with 2%
dextrose) and were plated on YPD media supplemented with 1.8%
bactoagar. Selection for geneticin resistance was made with YPD liquid
media or plates supplemented with 200 mg/liter of G418 sulfate (Life
Technologies, Inc.). One laboratory strain FY86 (S. cerevisiae, MAT PCR Amplifications--
Oligonucleotide primers used in this
study are listed in Table I. All PCR reactions were performed with the
Expand High Fidelity System (Boehringer Mannheim) with 10 × buffer 2 containing MgCl2. Reactions contained 0.2 µM primers, 160 µM dNTPs, 1 × buffer
2, and 50 ng of DNA template. Polymerase (0.75 µl per 50-µl
reaction) was added after denaturation for 5 min at 95 °C. Except
where stated, 30 cycles were performed with the following conditions: denaturation for 1 min at 94 °C, annealing for 1 min at a
temperature specific for each pair of primers, elongation for 1 min at
72 °C. To complete the final strand, the last step was allowed to
run 11 min at 72 °C. AQY1 was amplified from genomic DNA
from strains FY86, NRRL-Y-12632, GRF5, and Plasmid Construction--
Plasmids used in this study are listed
in Table I and were generated with standard cloning methods (19).
Constructs were checked by restriction digestion and double strand
sequencing. The SCAQP1-5'/SCAQP1-3' PCR products amplified from
genomic DNA of strains FY86, NRRL-Y-12632, GRF5, and Expression in Xenopus Oocytes and Osmotic Water Transport
Assays--
All plasmids were linearized by XbaI, and
capped cRNAs were synthesized in vitro as described (20).
Defolliculated stage V-VI oocytes from Xenopus laevis were
injected with 50 nl of water or 25 ng of sample cRNA and incubated 3-4
days in 200 mosM Barth's solution at 18 °C. Oocytes
were individually transferred to 70 mosM modified Barth's
solution; swelling was monitored by videomicroscopy, and Pf
was determined (21).
AQY1 Gene Disruption--
AQY1 was deleted from
strain Antibody--
A polyclonal anti-Aqy1p antibody was raised
against a synthetic N-terminal peptide Aqy1p
(NH2-SNDSNDTDKQHTRLDPTGVDD-COOH). The peptide was
cross-linked by its primary amine groups to the keyhole limpet
hemocyanin and used to immunize New Zealand White female rabbits
(Covance Research Products Inc., Denver, PA). Polyclonal antibodies to
Aqy1p were affinity purified over Affi-Gel-15 (Bio-Rad) containing the
cross-linked Aqy1p peptide.
Electrophoresis and Immunoblotting--
Membranes from
water-injected or cRNA-injected oocytes were prepared, and sample
pellets of five oocytes were resuspended in 2 µl per oocyte of 5 × Laemmli buffer + dithiothreitol (6 mg/ml) for 30 min at 37 °C
(20). Yeast total membranes were prepared from 300 ml of YPD cultures
at A600 nm of 2.0. The cells were washed with
45 ml of ddH2O water and pelleted at 1,500 × g for 5 min at 4 °C. The pellets were resuspended with 10 ml of cold resuspension buffer (50 mM MOPS-KOH, pH 7.5, 1 mM EDTA, 5 mM Phenotypic Analyses--
Studies routinely employed 200 ml of
YPD cultures of Sequence Alignments and Phylogenetic Analysis--
Nucleotide
and deduced polypeptide sequences of AQY1 and
AQY2 were used from the Saccharomyces genome data
base corresponding to laboratory strain S288C (AQY1, GenBank
accession no. 786301) and AQY2 (nos. 136025 and 51360256).
Alignments were refined by two successive runs; generation of
phylogenetic trees were performed with CLUSTALW 1.7 (24), and
polypeptide sequences of human or rat aquaporins used were hAQP0
(266537), hAQP1 (267412), hAQP2 (728874), hAQP3 (2497938), hAQP4
(1351967), hAQP5 (1703358), rAQP6 (2497939), rAQP7 (2350843), rAQP8 (2358277), hAQP9 (AB008775), Arabidopsis homologs DNA Sequence Analysis of Putative Aquaporins--
The complete
genomic DNA sequence from the S. cerevisiae laboratory
strain S288C (10) was found to contain four genes related to the
aquaporin family of membrane water channels. The known gene
FPS1 encodes a protein related to bacterial glycerol
facilitators (12), and a second related gene YFL054 was
identified. These homologs are genetically close to the
aquaglyceroporins, the group of mammalian proteins that transport
water, glycerol, and other small uncharged molecules (Fig.
1; see review in Ref. 1). In contrast,
the new ORF YPR192 (here designated AQY1)
occupies a branch on the phylogenic tree between two
Arabidopsis members of the aquaporin group of
water-selective transporters (Fig. 1) and two ORFs YLL052 and YLL053,
which may correspond to fragments of an aquaporin gene
(AQY2). To facilitate genetic and functional studies,
AQY1 was isolated using PCR primers designed from the yeast
genome data base (Table I), and
genomic DNA was obtained from multiple laboratory and wild-type strains
of Saccharomyces (Table I).
Aquaporins in Saccharomyces
GENETIC AND FUNCTIONAL DISTINCTIONS BETWEEN LABORATORY AND
WILD-TYPE STRAINS*
,
![]()
ABSTRACT
Top
Abstract
Introduction
Materials & Methods
Results
Discussion
References
![]()
INTRODUCTION
Top
Abstract
Introduction
Materials & Methods
Results
Discussion
References
![]()
MATERIALS AND METHODS
Top
Abstract
Introduction
Materials & Methods
Results
Discussion
References
, ura3-52,
his3
200, leu2
1) and three wild-type
strains, NRRL-Y-12632 (S. cerevisiae, MAT
,
Northern Regional Research Laboratories), GRF5 (S. norbensis, MAT
), and
1278b (S. cerevisiae, MAT
), were kindly provided by J. Boeke.
Alignments were made with sequences from the yeast genome data base
(10, 15).
1278b using the primers
SCAQP1-5' and SCAQP1-3' (and also SCAQP1-5' and LAQY1-3' for
1278b). To create a stronger translation initiation (17) for
expression of Aqy1p in Xenopus oocytes, the second codon
(TCT) after the start codon was modified to AGT in the primer
SCAQP1-5'. Annealing was done at 63 °C for both pairs of primers.
To construct the plasmid pX912104, a 229-bp fragment was amplified from
p912103 with the primers AQY1-AvaII and AQY1-LT, annealing
at 65 °C. The kanamycin resistance cassette
loxP-KanMX-loxP was amplified from the plasmid pUG6 kindly
provided by N. Shani (18) using the primers 5'KOKanY1 and 3'KOKanY1
after denaturation for 5 min at 95 °C followed by five cycles of
amplification: 1 min at 94 °C, 1 min at 55 °C, 1 min at 72 °C.
This was followed by 20 cycles: 1 min at 94 °C, 1 min at 65 °C, 1 min at 72 °C. To complete the final strand, the last step ran 11 min
at 72 °C. To generate a genomic Southern probe, a 650-bp fragment
was amplified from
1278b genomic DNA using primers SCAQP103 and
SCAQP104 specific to the S288C AQY1 5'-flanking region with
annealing at 63 °C.
1278b were
cloned into pCR2.1 (Invitrogen) yielding pFY86103, pGN18102, p799102,
and p912102. The SCAQP1-5'/LAQY1-3' PCR product from strain
1278b was cloned into pCR2.1 yielding p912103. For expression of Aqy1p in
oocytes, BglII-BglII fragments containing the
AQY1 ORF from pFY86103, pGN18102, and p912103 were cloned
into the BglII site of the pX
G-ev1 expression vector
(20), yielding pXFY86103, pXGN18101, and pX912103. AQY1
mutant constructs were created as follows: pX912104 was created by
ligating the 706-bp BglII-AvaII fragment from
p912103 and the 229-bp AvaII-BglI PCR fragment
from pFY86103 into the BglII site of pX
G-ev1. pX799101
and pX912101 were obtained by subcloning the 938-bp
BglII-BglII fragments from p799102 and p912102
into the BglII site of pX
G-ev1 encoding the Aqy1pCh2. To test the role of the residues Asn-47, Val-121,
and Pro-255 in Aqy1p activity, three mutations (D47N, M121V, T255P) were created in pXFY86103 using the Chameleon double-stranded site-directed mutagenesis kit (Stratagene). The selection primer was
ScaI-MluI, and the mutation primers (Table I)
contained mutations AGA to AAA for Aqy1p D47N, ATG to GTG for Aqy1p
M121V, and GCC to GCA for Aqy1p T255P. All combinations were then made
by ligating the different HindIII-AlwnI and
AlwnI-XbaI fragments from the chosen constructs
into the HindIII-XbaI sites of pX
G-ev1,
resulting in the constructs pXFY86DN, pXFY86MV, pXFY86TP, pXFY86DNMV,
pXFY86DNTP, pXFY86MVTP, and pXFY86DNMVTP.
1278b by the one-step gene replacement method (22) using the
loxP-KanMX-loxP module, geneticin resistance cassette (18).
After transformation, cells were incubated 4 h at 30 °C in YPD,
washed once in distilled deionized H2O, and plated on YPD
plates plus 200 µg/ml G418. After 2 days at 30 °C, the plates were
replicated on fresh YPD plates plus G418 to eliminate contaminants. The
correct integration of the Kanamycin resistance cassette was tested by
genomic Southern blot. 10 µg of genomic DNA from five
geneticin-resistant clones (MELY11-15) and wild-type
1278b were cut
by HincII and EcoRV + SpeI. After
electrophoresis and overnight capillary transfer, the nylon membrane
was probed with the [
32-P]dCTP radiolabeled
PCR-generated probe specific to the 650-bp 5'-untranslated region of
AQY1.
-mercaptoethanol, 0.015 mM leupeptin, 30 mM benzamidine, 0.05 mg/ml
aprotinin, 0.013 mg/ml pepstatin A, and 0.26 mg/ml phenylmethylsulfonyl fluoride). The cells were lysed with three passes through a French press (18,000 p.s.i.) at 4 °C and spun at 12,000 × g for 10 min at 4 °C. The membrane-containing supernatant
was spun at 100,000 × g for 1 h at 4 °C. The
membrane pellet was resuspended with 20 ml of 1 × Laemmli buffer + dithiothreitol (6 mg/ml) and incubated at room temperature for 30 min
before loading 25 µl per lane. Samples were separated by
SDS-polyacrylamide gel electrophoresis (23) in a 15% gel and blotted
to Sequi-Blot polyvinylidene difluoride membrane (Bio-Rad) in transfer
buffer (20 mM Tris, pH 7.4, 10 mM sodium
acetate, 1.0 mM EDTA, 0.02% SDS). Membranes were probed with the affinity-purified anti-Aqy1p antibody overnight at 4 °C. Then, horseradish peroxidase conjugated to donkey anti-rabbit IgG
(Amersham Pharmacia Biotech) was added to a dilution of 1:10,000. Bands
were visualized using ECL+Plus reagent (Amersham).
1278b and MELY11 inoculated with single colonies
from fresh YPD or YPD/G418 plates. The cells were incubated at 30 °C
until A600 nm reached 0.1-0.4 (15-16 h). The
correlation between A600 nm and the number of
cells for the two different strains, as well as the initial and final
number of living cells, was calculated by counting colonies on five YPD
or YPD/G418 plates. For the growth curve experiments, 50-ml cultures of
1278b or MELY11 at 0.05 A600 nm were started
in 20% YPD, YPD, or YPD + 1 M NaCl. At time zero, 100 µl
of each culture was diluted 100 times in YPD, and five 20-µl aliquots
of
1278b or MELY11 were plated on YPD or YPD/G418 plates. OD was
determined, and aliquots were diluted 200 times (after incubation
periods of 2 and 4 h) and 1,000 times (after incubation periods of
6 and 8 h) and plated. After 8 h, the cells grown in 20% YPD
were spun down at 1,500 × g for 5 min and resuspended
in fresh 20% YPD to restore nutrients. Cultures were incubated a total
of 27 h, and the final A600 nm was determined. For the hypo-osmolar growth and hyper-osmolar wash cycles,
7.5 OD units of a preculture in YPD were spun at 1,500 × g for 5 min at room temperature. After removing
supernatants, the pellets were washed once with 25 ml of YPD + 1 M NaCl, resuspended in 25 ml of 20% YPD, and shaken for
1 h at 30 °C. Five more cycles were undertaken with 20% YPD
and YPD + 1 M NaCl. The cells were finally resuspended in
25 ml of 20% YPD. Aliquots were diluted 1000 times after one, two, and
four cycles and 2000 times after six cycles. From each dilution, 20 µl were plated on five YPD plates (
1278b and MELY11) or five
YPD/G418 plates (MELY11). For the hyper-osmolar growth and hypo-osmolar
wash cycles, the experiments were conducted similarly, except the yeast
cells were grown for 1 h in YPD + 1 M NaCl and washed
in sterile distilled, deionized H2O. Aliquots were diluted
100 times after one and two cycles and 3 times after four and six
cycles before plating.
TIP
(135860) and PIP1a (1175010), E. coli homologs AqpZ
(2506860) and GlpF (417065), and yeast homologs Fps1p (1706896) and
Yfl054p (1175958). Transmembrane segments were predicted with the PHDtm program (25).
![]()
RESULTS
Top
Abstract
Introduction
Materials & Methods
Results
Discussion
References

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Fig. 1.
Phylogenetic analysis of aquaporin homologs
from Saccharomyces compared with known mammalian homologs
(AQP0-9), E. coli homologs (AqpZ and GlpF), and selected
Arabidopsis homologs. Two subsets are revealed:
homologs permeable to water (aquaporins, unstippled area)
and homologs permeable to water, glycerol, and other small molecules
(aquaglyceroporins, stippled area). The bar
represents the genetic distance of the branch length (24).
Yeast strains, plasmids, and oligonucleotides
|
1278b and GRF5 (Fig. 2B), which both share a C
terminus distinctly different from the first variant ORFs. These
AQY1 genes encode 327-amino acid polypeptides with a
calculated molecular mass of 35.4 kDa (
1278b) and structural domains
and residues highly conserved among mammalian and plant aquaporins,
including Val-121 and Pro-255. The deduced amino acid sequences were
otherwise identical except for three polymorphisms: R42K, V53A, and
P308S. The major difference between these Aqy1 polypeptides and those with the first variant is the C-terminal domain. In the 984-bp ORF, a
series of seven adenines beginning at position 872 (instead of eight
adenines) lead to translation from the reading frame beginning with
Val-293 (Fig. 2B, arrows). Thus, when compared with FY86, S288C, and NRRL-Y-12632 strains, the Aqy1p from wild-type strains
1278b and GRF5 each possess a longer C terminus with an
18-residue hydrophobic stretch, which may represent a seventh transmembrane segment.
Functional Analysis of Water Permeability--
Functional
demonstration of yeast aquaporin homologs was established by
calculating the coefficients of osmotic water permeability, Pf (21), from rates of hypo-osmotic swelling measured from
Xenopus oocytes injected with cRNA synthesized from
AQY1 constructs prepared from multiple laboratory strains or
wild-type strains of Saccharomyces (described in Tables I
and II). Oocytes expressing Aqy1p from laboratory strain FY86 failed to
show an increase in Pf (Table II, Fig.
3A). In contrast, oocytes
expressing Aqy1p from wild-type strain
1278b (Table II) exhibited
more than a 10-fold increase in the Pf (127.6 × 10
4 cm/s) when compared with the water-injected oocytes
(10.5 × 10
4 cm/s, Fig. 3A). Consistent
with the lack of a cysteine preceding the second NPA motif (28), no
inhibition of Pf was achieved by preincubating oocytes in
up to 1 mM HgCl2 (128 × 10
4
cm/s). To determine whether all cRNA injections resulted in Aqy1p expression, an antibody was raised to a synthetic peptide corresponding to 20 amino acids of the Aqy1p N terminus. Immunoblot analysis revealed
that oocytes exhibiting increased Pf contained significant amounts of the 35-kDa polypeptide. In contrast, oocytes injected with
cRNAs that conferred no increase in Pf were found to have a
correspondingly weak 34-kDa band accompanied by an even fainter band of
higher molecular weight (Fig. 3B).
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|
1278b wild-type Aqy1p (M1-K292) with the C terminus of FY86 laboratory strain Aqy1p (G293-V305). The
second chimera, Aqy1pCh2, resulted from the serendipitous fusion of the wild-type Aqy1p (M1-L310) and a unique, non-naturally occurring C-terminal sequence encoded by the 3'-untranslated region of
the Xenopus
-globin gene (DLVTTKPASRTPEWSL-COOH)
producing a 326-residue polypeptide. Although equivalent amounts of
cRNA were injected into oocytes, both oocytes expressing the chimeric proteins exhibited higher Pf values than oocytes expressing
the wild-type protein: Aqy1Ch1 218 × 10
4 cm/s, Aqy1pCh2 178 × 10
4 cm/s (not shown), and Aqy1pWT 127.6 × 10
4 cm/s (Fig. 3A).
To explore other possible explanations for reduced water permeability
by oocytes expressing Aqy1p from laboratory strains, a series of
site-directed mutants was prepared with each of the amino acid
substitutions replaced individually or in pairs by the corresponding
residues in Aqy1p from the wild-type strains
1278b and GRF5: D47N,
M121V, and T255P (Fig. 2A). Oocytes expressing Aqy1pLS modified with single substitutions D47N, M121V, or
T255P did not exhibit a detectable increase in the Pf when
compared with the water-injected oocytes or oocytes expressing the
unmodified Aqy1pLS (Fig. 3A). This failure to
enhance Pf was correlated with a low level of expression of
the mutant proteins (Fig. 3B). Similar results were observed
with the Aqy1pLS modified with double substitutions D47N/M121V or D47N/T255P. However the double substitution M121V/T255P and the triple substitution D47N/M121V/T255P generated high
Pf values (193 and 176 × 10
4 cm/s, Fig.
3A) with correspondingly large levels of 34-kDa polypeptide (Fig. 3B). Thus, mutant forms of Aqy1p with reduced
Pf have correspondingly low levels of expressed protein.
Sensitivity to Osmotic Stress by Laboratory and Wild-type
Strains--
The identification of AQY1 with two amino acid
substitutions that impair protein biogenesis or function in multiple
laboratory strains of Saccharomyces suggests that the yeast
are under selective pressure not to express functional aquaporins
during laboratory procedures. Membranes from a laboratory strain of
yeast (FY86) were directly compared with a wild-type strain (
1278b)
by immunoblotting with anti-Aqy1p (Fig.
4A). Although the lab strain
contained a weakly detectable band of ~35 kDa, the wild-type yeast
contained a much stronger signal. To determine whether deletion of the
AQY1 gene from
1278b cells would produce a similar
selective advantage, it was removed by the gene replacement technique
(18). Genomic DNAs from five geneticin-resistant clones were digested
with HincII and EcoRV + SpeI and
probed with the PCR-amplified fragment specific to the S288C
AQY1 5'-flanking region (Fig. 4B). Hybridization signals of 630 bp after the HincII digestion and 2270 bp
after EcoRV + SpeI digestion were detected in
four clones (MELY11-14), confirming the recombination between the
loxP-KanMX-loxP cassette and AQY1. AQY1 deletion
clones were also confirmed by PCR using the AQY1
ORF-specific primers SCAQP1-5' and SCAQP1-3' (not shown).
|
1278b and clone MELY11 were compared in hypo-osmolar media (20% YPD), iso-osmolar media (YPD), and
hyper-osmolar media (YPD + 1 M NaCl). In all growth
conditions, wild-type and MELY11 cells exhibited similar growth rates
(Fig. 5A). Wild-type and
MELY11 cells were similarly sensitive to hyper-osmolarity, as their
growth rates were equivalently reduced in presence of 1 M
NaCl (Fig. 5A). Likewise, they both exhibited equivalently brisk growth rates in YPD and 20% YPD. Wild-type and MELY11 cells were
then subjected to a series of osmotic stress-growth cycles. Growth in
hypo-osmolar buffer with hyper-osmolar washes produced a clear
advantage for the MELY11 cells, with incremental differences becoming
more pronounced after six cycles (Fig. 5B). Equivalent results were achieved in nine successive experiments. The converse experiment was performed by culturing the cells in hyper-osmolar media
followed by hypo-osmolar washes. After the first cycle, the number of
surviving cells had greatly declined, but the MELY11 cells exhibited a
4-fold survival advantage (Fig. 5C). Although the number of
surviving cells further declined after each cycle, the MELY11 cells
were found to be relatively spared with 6.4-, 6.8-, and 9.2-fold
greater survival after two, four, and six cycles (Fig. 5C).
Equivalent results were achieved in eight successive experiments. To
confirm that the plating on geneticin did not affect the survival
rates, MELY11 cells were plated on YPD plates without or with the
antibiotic, and survivals were similar in the presence of geneticin
(Fig. 5, B and C). Thus, we conclude that
increased survival under these conditions is significantly enhanced by
deletion of AQY1.
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DISCUSSION |
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The recent availability of completely sequenced genomes has greatly facilitated recognition of genes homologous to known sequences; however our experience illustrates some complexities encountered when taking this information to the laboratory bench. Computer screening of the genome from S. cerevisiae (10) revealed that the widely expressed aquaporin family of membrane water channels is represented in yeast. As expected, we found the gene FPS1, which is known to encode a glycerol transporter with sequence similarities to aquaglyceroporins (12), and a second sequence-related ORF was found, which most likely also encodes a glycerol transporter (Fig. 1). Another sequence-related ORF was recognized in the S. cerevisiae genome, and our studies indicate that AQY1 represents an aquaporin gene.
Surprisingly, different laboratory and wild-type strains of S. cerevisiae were found to have specific sequence differences with functional consequences. AQY1 from two laboratory strains and one wild-type strain encode a 305-residue polypeptide that fails to confer increased osmotic water permeability when expressed in Xenopus oocytes. In contrast, AQY1 from two other wild-type strains encodes a 327-residue polypeptide that is functional in oocytes. To our knowledge, these observations represent the first demonstration of a functional aquaporin from yeast and are supported by preliminary studies made independently by other scientists (26).
The failure of Aqy1p from laboratory strains to transport water is not due to the C terminus. The single nucleotide insertion before codon 293 of AQY1 from laboratory strains results in a frameshift with termination after codon 305. Although we initially suspected this to be an explanation for the lack of function, creation of an Aqy1p chimeric molecule with the laboratory strain C terminus on wild-type Aqy1p did not cause reduced activity but actually resulted in a significant 70% increase in Pf. In addition, creation of a chimeric Aqy1p with the wild-type C terminus replaced by a non-natural peptide sequence also increased the Pf. Although not yet conclusive, these observations suggest that the C terminus of the wild-type sequence containing hydrophobic stretches with spaced, charged residues may serve as a negative regulator of Aqy1p.
Differences within the coding region of Aqy1p from laboratory strains
revealed genetic explanations for the lack of function. Three amino
acid substitutions were found when the Aqy1p sequences of wild-type and
laboratory strains were compared, and two led to loss of water
transport activity when expressed in oocytes. The V121M substitution
lies within loop B (Fig. 2) and may occlude the channel possibly
destabilizing the protein, since in the hourglass model it is proposed
that loops B and E fold back in the membrane bilayer forming a single
aqueous pathway (27). The P255T substitution occurs at the site of a
critical bend in the sixth membrane-spanning
-helix (3) and
therefore may induce a conformational change impairing stability of the
protein. Immunoblot analysis of oocytes expressing these mutant forms
of Aqy1p indicated that cRNA-injected oocytes with low Pf
values contained only low levels of the protein and some higher
molecular weight aggregates (Fig. 4B). Since translation should be similar for all injected AQY1 cRNAs, the low level
of protein indicates that the Aqy1p from the laboratory strains may be
misfolded and unstable in the oocytes. Although this may possibly represent an artifact of the oocyte system (30), these results are
consistent with the reduced level of endogenous Aqy1p in the laboratory
yeast strain FY86 compared with the wild-type strain
1278b (Fig.
4A). Studies of mutant forms of AQP1 (28) and AQP2 (29)
demonstrated the failure to traffic to the outer membrane because of
apparent misfolding.
Our studies demonstrate that Aqy1p is not essential for life, and standard laboratory conditions exert negative selection pressure on yeast expressing the protein. This is particularly well supported by identification of two separate mutations in AQY1 leaving minimal chance for spontaneous reversal. When compared by survival in conditions representing exaggerations of laboratory procedures, we found that osmotic stress during growth cycles was much better tolerated by AQY1 null yeast than by the parental wild-type yeast.
Our studies do not define the physiological role of Aqy1p in a natural environment; however, a role in osmoregulation seems likely. Current models describing how cells sense osmotic stress do not delineate the very first step in the process, which is rapid flow of water among intracellular compartments. It is known that in response to a hyper-osmotic stress, yeast cells lose cytoplasmic water; this is followed by an efflux of water from the vacuole to the cytoplasm. Finally, the cells accumulate glycerol at high concentrations. In response to hypo-osmotic stress, yeast cells cease to accumulate glycerol and undergo activation of a mitogen-activated protein kinase cascade, which is regulated by Pkc1p (for review, see Ref. 31). We speculate that Aqy1p may mediate rapid movements of water preceding the osmotic responses.
It has recently been shown that the wild-type strain
1278b is
capable of pseudohyphal growth under nitrogen starvation conditions, whereas laboratory strain S288C is unable to form pseudohyphae (32,
33). The authors demonstrated a point mutation in FLO8 from strain
S288C leading to a block in growth of pseudohyphae. Because many
wild-type yeast strains are filamentous, pseudohyphal formation may
contribute to their ability to survive in their normal environments.
Many laboratory strains are defective in pseudohyphal formation and
carry the same FLO8 mutation, leading to the conclusion that these
mutations were selected during laboratory cultivation. Thus,
comparisons of data between laboratories using different putative
wild-type strains must be undertaken with the utmost care.
Although our studies predict that Aqy1p will function to facilitate osmotically directed movements of water, firm identification of the physiological need for this process may not be achieved directly. The E. coli homolog AqpZ was also found to be nonessential for life; however, the null phenotype only became obvious under conditions sustaining maximum growth rates (7). The known sequence-related protein Fps1p was predicted by gene sequence comparisons to be a glycerol facilitator (11). Bacterial glycerol facilitators have been defined in oocytes for their ability to transport glycerol (34) and are related to aquaglyceroporins. Much effort was needed to demonstrate the function of Fps1p in releasing glycerol (an osmolyte) in response to hypo-osmotic stress (12). Nevertheless, Fps1p is not essential for life, and other functions are still being studied including possible roles in phospholipid biogenesis (13) or in maintenance of osmotic balance, which regulates cell fusion during mating (35).
Elucidation of the normal functions of Aqy1p will require additional studies. It is possible that Aqy1p may be involved in specific phases of the cell cycle. If control of the osmotic balance is important for mating, it may also be critical for processes like budding, pseudohyphal formation, or sporulation. It has been already shown that laboratory strains, industrial strains, and wild-type strains of yeast may have physiological differences in osmosensitivity, but the genetic explanation is not yet known (36). Our studies showing that wild-type and laboratory strains of S. cerevisiae contain distinct AQY1 sequences, resulting in major functional differences that may provide an explanation for these differences.
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ACKNOWLEDGEMENTS |
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We thank Jef Boeke for valuable suggestions and critical reading of the manuscript and Stefan Hohmann for collegial discussions.
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FOOTNOTES |
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* This work was supported by National Institutes of Health Grants HL48268, HL33991, EY11239, and DK45787.The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
The nucleotide sequence(s) reported in this paper has been submitted to the GenBankTM/EMBL Data Bank with accession number(s) AF053981.
Received postdoctoral training support from Bourse de Formation a
l'Étranger de la Fondation pour la Recherche Médicale and
INSERM.
§ Received predoctoral training support from National Institutes of Health Grant GM07445.
¶ To whom correspondence should be addressed: Dept. of Biological Chemistry, Johns Hopkins School of Medicine, 725 North Wolfe St., Baltimore, MD 21205-2185. Tel.: 410-955-7049; Fax: 410-955-3149; E-mail: pagre{at}jhmi.edu.
The abbreviations used are: ORF, open reading frame; PCR, polymerase chain reaction; bp, base pair(s); MOPS, 4-morpholinepropanesulfonic acid.
2
Unless otherwise stated, the
1278b strain was
used as our standard wild type; wild-type strains GRF5 and NRRL-Y-12632
were also studied. Strain FY86 was used as our standard laboratory strain.
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REFERENCES |
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