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J Biol Chem, Vol. 273, Issue 43, 28010-28018, October 23, 1998
The Effect of Human 2-Microglobulin on Major
Histocompatibility Complex I Peptide Loading and the Engineering of a
High Affinity Variant
IMPLICATIONS FOR PEPTIDE-BASED VACCINES*
Michael J.
Shields §,
Ryuji
Kubota¶,
Wesley
Hodgson ,
Steven
Jacobson¶,
William E.
Biddison¶, and
Randall K.
Ribaudo **
From the Laboratory of Immune Cell Biology, NCI,
National Institutes of Health, Bethesda, Maryland 20892-1152 and the
¶ Neuroimmunology Branch, NINDS, National Institutes of Health,
Bethesda, Maryland 20892
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ABSTRACT |
The ability to directly load cell surface major
histocompatibility complex (MHC) class I molecules with peptides
provides a potentially powerful approach toward the development of
vaccines to generate cell-mediated immunity. We demonstrate that
exogenous 2-microglobulin ( 2m)
stabilizes human cell surface MHC I molecules and facilitates their
loading with exogenous peptides. Additionally, using three-dimensional
crystal structures and known interaction sites between MHC I heavy
chains and 2m, we engineered variants of human
2m (h 2m) with a single serine
substitution at residue 55. This alteration was predicted to promote
hydrophobic interactions at the MHC I heavy chain/ 2m
interface and displace an ordered water molecule. Compared with
h 2m, the serine to valine substitution at residue 55 had
improved ability to bind to cell surface HLA-A1, HLA-A2, and HLA-A3
molecules, facilitate exogenous peptide loading, and promote
recognition by peptide-specific T cells. The inclusion of
h 2m or higher affinity variants when pulsing cells with
MHC-restricted peptides increases the efficiency of peptide loading
50-80-fold. Therefore, the inclusion of h 2m in
peptide-based vaccines may increase cell surface antigen densities
above thresholds that allow recognition of peptide antigens by the
immune system, particularly for cryptic, subdominant, or marginally
antigenic peptides.
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INTRODUCTION |
In the field of vaccine development, it has been relatively simple
to induce humoral responses to injected antigens. However, one of the
major challenges in the treatment of tumors and viral infections is the
generation of vaccines that stimulate cell-mediated immune responses to
these pathogens. Specific cytolytic responses are generally mediated by
CD8+ T cell recognition of antigenic peptides in the context of major
histocompatibility complex
(MHC)1 class I molecules.
Recent advances in defining "supermotif" antigens capable of being
presented by multiple MHC I alleles (1-4) and immunodominant epitopes
(5-9) will undoubtedly have a significant impact on realizing these
goals. However, beyond defining appropriate antigenic peptides, a
second challenge lies in establishing effective methods with which to
deliver these antigens to the MHC I loading pathway. Typically, MHC I
molecules acquire peptides generated by the degradation of endogenous
proteins by the proteasome. These peptides are transported into the
endoplasmic reticulum, where they are bound by MHC
I· 2-microglobulin ( 2m) complexes and
finally transit to the cell surface (10-12). Although this pathway is
the dominant means of loading MHC I molecules, other methods of
delivering antigenic peptides to MHC I have been described including
direct incorporation of DNA into cells (13-16),
phagocytosis-dependent representation of antigens (17, 18),
and infection by bacterial (19) or viral vectors (20, 21). All of these
approaches attempt to introduce peptide into the endogenous loading
pathway. Alternatively, direct cell surface loading of MHC I molecules in vitro has also been demonstrated but is inefficient in
the absence of serum (22, 23). Thus, peptide antigens can be bound to
MHC I molecules, but they must either be introduced into the endogenous
pathway or be loaded exogenously.
Some active and approved clinical trials involve the direct injection
of free peptide (usually in an oil-based adjuvant) into patients to
induce cell-mediated immunity (e.g. Protocol ID numbers NCI-95-C-0145D, NCI-T95-0031N, NCI-95-C-0143B, NCI-T95-0039N, MSKCC-95052, NCI-H95-0769, LAC-USC-10M954, NCI-T95-0069D,
NCI-97-C-0141, NCI-T96-0078, NCI-98-C-0023, NCI-98-C-0022,
94-C-0159).2 The most likely
mechanism for the formation of peptide-MHC I complexes in these cases
is the exogenous binding of free peptide to cell surface MHC I
molecules. Successful exogenous loading requires that added peptides
bind to cell surface MHC I molecules by exchange of their endogenously
derived peptides. Since MHC I molecules that have lost their
endogenously loaded peptides are inherently unstable (24), efficient
loading of exogenous peptide presents a significant challenge. We, as
well as others, have demonstrated that empty MHC I molecules can be
stabilized with exogenous human 2m (h 2m)
(23, 25, 26). Thus, the generation of higher affinity variants of
2m could both quantitatively and qualitatively affect
the efficiency of exogenous peptide loading by increasing both the
amount of peptide loaded as well as the length of time that the peptide
remains bound. These qualitative and quantitative effects may allow the
immune system to generate cellular responses to lower affinity
peptides. Responses to lower affinity antigens may in turn lead to
recognition and destruction of neoplastic or virally infected cells
that would otherwise be below the threshold of recognition by the
immune system.
Site-directed mutagenesis of MHC I heavy chains has identified residues
that affect peptide association, T cell recognition, and stability with
2m (27-29). Additionally, a great deal of work has been
done identifying, analyzing, and modifying peptides bound to MHC
molecules. In contrast, however, much less work has been done
engineering and comparing different 2m molecules, with a few notable exceptions comparing murine with human 2m
and mutagenizing h 2m (26, 30-35). Further, comparisons
of h 2m and murine 2m (m 2m)
reveal that h 2m binds with higher affinity to murine MHC I heavy chains than m 2m (31), and we have identified a
region of h 2m (the S5 strand) responsible in part for
this effect (26). Using this information and the available
three-dimensional crystal structures of MHC I molecules, we engineered
a variant of h 2m to create an ionic bond that stabilized
interactions with the murine MHC I heavy chain H-2Dd to a
greater extent than wild-type h 2m (26).
We have now extended this work to human MHC I molecules. In this report
we have utilized four independent means to compare variant
h 2m molecules: 1) an assay in which exogenous
2m and peptide stabilize cell surface MHC molecules that
have been stripped of their endogenous 2m and peptide
(36, 37); 2) an inhibition assay we have developed that directly
compares the ability of different 2m species to bind to
cell surface MHC molecules; 3) direct peptide binding to MHC I
molecules using a FITC-labeled peptide; and 4) a cytotoxic T lymphocyte
(CTL) lysis assay, which indirectly measures the loading of antigenic
peptides onto target cells based on the lysis of those target cells by
CTL clones. We have engineered a higher affinity variant of
h 2m that, by the above criteria, stabilizes human MHC I
molecules to a greater extent than wild-type h 2m,
enhances peptide binding, and enhances the ability of CTL to recognize
peptide-loaded target cells. Further, this stabilizing activity was
observed with all three HLA alleles examined: HLA-A1, HLA-A2, and
HLA-A3.
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EXPERIMENTAL PROCEDURES |
Site-directed Mutagenesis
h 2m cDNA in Bluescript SK (Stratagene, La
Jolla, CA) was mutated using the ExSite mutagenesis system (Stratagene)
according to the manufacturer's protocol and subcloned into the
bacterial expression vector pET-21d(+) (Novagen, Madison, WI) using
engineered NcoI and BamHI sites at the 5'- and
3'-end of the mature protein sequence, respectively. The D53 variants
were described previously (26). The oligonucleotides used for the S55
mutagenesis were as follows: sense S55I, 5'-ATT TTC AGC AAG
GAC TGG TCT TTC-3'; sense S55V, 5'-GTG TTC AGC AAG GAC TGG
TCT TTC-3'; common antisense, 5'-TAA GTC TGA ATG CTC CAC TTT
TTC-3'.
The oligonucleotides used for the insertion of the 9E10 epitope (amino
acid sequence EQKLISEEDLN) at the amino terminus of wild-type
2m to create the myc- 2m were as
follows: sense myc, 5'-TCC GAG GAG GAC CTG AAC ATC CAG CGT
ACT CCA AAG ATT CAG G-3'; Antisense myc, 5'-AAT AAG CTT CTG CTC
CAT GGC CTC GAG GCC AGA AAG AGA GAG-3'. Mutagenized or added
regions are underlined. Constructs were confirmed by sequence
analysis using standard techniques.
Synthesis and Purification of Recombinant 2m
Recombinant 2m expression and purification has
been described previously (26). Briefly, 2m constructs
in pET-21d(+) were transformed into the BL21(DE3) strain of
Escherichia coli. At an A600 of 0.6, cultures were induced with 1 mM
isopropyl-1-thio- -D-galactopyranoside for 4 h, and
inclusion bodies were isolated by centrifugation after sonication of
bacteria in 200 mM Tris, 2 mM EDTA, 10% Triton X-100, pH 7.6, and washing in 200 mM Tris, 2 mM
EDTA, pH 7.6. Inclusion bodies were solubilized in 6 M
guanidine HCl containing 0.3 M dithiothreitol, 100 mM Tris, pH 8.0, and a mixture of protease inhibitors (5 µg/ml leupeptin, 0.5 mM 4-(2-aminoethyl)-benzenesulfonyl fluoride hydrochloride, 1% aprotinin). Following overnight dialysis in
6 M guanidine, pH 2.0, recombinant protein was refolded
over 72 h in 0.4 M arginine, 5 mM oxidized
glutathione, 100 mM Tris, 2 mM EDTA at
10 °C. Following refolding, preparations were dialyzed exhaustively
against 0.4 M arginine, 100 mM Tris, 2 mM EDTA, pH 8.0, and then PBS at 4 °C. Preparations were
purified as a single peak by preparative fast protein liquid
chromatography on a Superdex 75pg gel filtration column (Amersham
Pharmacia Biotech), concentrated using Centriprep-3 concentrating units
(Amicon, Beverly, MA), and sterile-filtered, and concentrations were
calculated based on A280 readings. Recombinant
2m was judged to be 95% pure based on analysis by
SDS-polyacrylamide gel electrophoresis, and analytical fast protein
liquid chromatography. Independent preparations have been compared for
specific activity and shown to be identical at a molar level with no
loss in activity when stored at 70 °C for >6 months and at
4 °C for >2 months. Recombinant h 2m was also shown
to be identical in activity to native h 2m purified from
urine (Sigma) (38).
Cell Lines and Abs
Hmy2.C1R cells (39) were stably transfected with HLA-A1, -A2,
and -A3 as described previously (40, 41). HLA-A2/HTLV-1 tax
11-19 peptide-specific CTL clone N1218 and HLA-A3/influenza NP
265-273 peptide clone 2G12 were isolated and restimulated as described
previously (42). All mAbs were used as culture supernatants grown in
Dulbecco's modified Eagle's medium supplemented with 10% fetal calf
serum, 20 mM HEPES, 2 mM
L-glutamine, 1% nonessential amino acids, 1%
penicillin/streptomycin, and 0.04 mg/ml of Gentamicin sulfate (complete
Dulbecco's modified Eagle's medium). GAP.A3 (HLA-A3-specific) and
BB7.5 (pan-HLA-ABC-specific) hybridomas were obtained from the American
Type Culture Collection (Rockville, MD). The myc-specific 9E10
hybridoma has been previously described (43). Unless otherwise noted,
all solutions used for cell growth were obtained from Biofluids
(Rockville, MD).
Peptides
Peptides were as follows: the HLA-A1 binding ornithine
decarboxylase 309-317 (OD 309), SSEQTFMYY; the HLA-A2-binding HTLV-1 TAX 11-19, LLFGYPVYV; HIV gag 77-85, SLYNTVATL; the
FITC-conjugated HIV RT 195-207 peptide, ILK*EPVHGV (the FITC moiety is
conjugated to the lysine residue); the HLA-A3-binding pn2a.A3,
KLYEKVYTYK; and influenza NP 265-273, ILRGSVAHK (44-49). The peptides
were purchased from Bachem (Torrance, CA), provided by Drs. Jack
Bennink and Jonathan Yewdell, or provided by John E. Coligan (NIAID,
NIH). All peptides were purified by reverse phase HPLC and were >95% pure as determined by analytical HPLC and mass spectrometry.
Cytotoxic T Lymphocyte Lysis Assays
Cytolytic activity was assessed using a modified Europium
release assay (50) as follows. Hmy2.C1R cells transfected with HLA-A2
or HLA-A3 were resuspended to 4 × 106 cells/ml in
complete Dulbecco's modified Eagle's medium supplemented with 20 µM BATD (which forms a fluorescent chelate with Europium; Wallac, Gaithersburg, MD) and incubated at 37 °C for 30-60 min. Cells were resuspended in 10 ml of serum-free (SF) CTL medium (Iscove's modified Dulbecco's medium (IMDM) supplemented with 5 mg/ml
bovine serum albumin (BSA; Sigma), 2 mM
L-glutamine, 1.25 mM sulfinpyrazone (Sigma),
and 1% penicillin/streptomycin), centrifuged, and washed once more
with SF CTL medium. Cells were then pulsed with peptide with or without
2m in SF CTL medium for 60-90 min at 37 °C. Cells
were washed twice in SF CTL medium, resuspended in CTL medium (5%
fetal calf serum in lieu of BSA), and combined at the designated
effector:target ratio with CTL clones in round bottom microtiter
plates. Plates were gently centrifuged at 100 × g for
2 min and then incubated at 37 °C for 2 h. Finally, plates were
centrifuged at 300 × g, and 20 µl/well was
transferred to 200 µl of 0.3 M acetic acid, 60 mM sodium acetate, 7.5 µg/ml Europium (Aldrich,
Milwaukee, WI), and the plate was read on a Wallac 1234 DELFIA
fluorometer. The percentage of specific lysis was calculated with the
following equation: 100 × ((experimental blank) (spontaneous blank))/((maximum blank) (spontaneous blank)). Triplicate samples were used, and error
bars indicate S.D. values.
FITC-conjugated Peptide Binding to Cell Surface MHC I
Molecules
Hmy2.C1R-A2 cells were resuspended in SF IMDM (IMDM supplemented
with 2.5 mg/ml BSA, 20 mM HEPES, 2 mM
L-glutamine, 1% nonessential amino acids, 1%
penicillin/streptomycin, and 0.04 mg/ml Gentamicin sulfate) with the
indicated concentrations of peptide with or without recombinant
2m and incubated at 37 °C for 17 h. Cells were
washed twice with PBS plus 2 mg/ml BSA (PBSA) and resuspended in PBSA
followed by flow cytometric analysis on a FACS analyzer (Becton
Dickinson, Mountain View, CA). 8000-20,000 live (propidium iodide-excluding) events were collected per sample, and values are
expressed as mean fluorescence intensity. ED50 values were calculated using a sigmoid logistic fit.
Cell Surface MHC Stabilization of Acid-stripped Cells
The MHC stabilization was done essentially as described
previously (36, 37, 51) with minor modifications. Briefly, Hmy2.C1R-A1, -A2, and -A3 cells were washed twice with PBS, resuspended in 0.13 M citric acid, 66 mM
Na2HPO4, pH 2.9 (pH 3.2 for A2 cells), for
90 s at 4 °C, washed with two 50-ml changes of IMDM, and
resuspended in SF IMDM. 105 cells/well were added to a
96-well microtiter plate containing hybridoma supernatants, peptide,
and 2m dilutions in a total volume of 150 µl. After a
4-h incubation at 23 °C, cells were washed twice with PBS, 2 mg/ml
BSA, 0.02% NaN3 (FACS buffer) and stained with
FITC-conjugated goat anti-mouse IgG (H + L) F(ab')2 fragment (Cappel/Organon Teknika, Durham, NC) for 1 h at 4 °C. Cells were washed twice with FACS buffer and fixed in 1% formaldehyde in PBS followed by flow cytometric analysis on a FACScan II (Becton Dickinson, Mountain View, CA). Values are expressed as mean
fluorescence intensity.
myc-h 2m Binding and Inhibition Assays
myc- 2m Binding Assay--
Hmy2.C1R transfectant
cells at 2.5 × 105 cells/tube in a 500-µl volume
were incubated at 37 °C for 16 h in SF IMDM with different concentrations of myc- 2m with or without peptide. Cells
were washed three times in plain IMDM followed by incubation with 9E10 (anti-myc) hybridoma supernatant at 4 °C for 1 h. After washing with IMDM, cells were stained for 1 h with FITC anti-mouse IgG at
4 °C for 1 h. Cells were washed a final time in FACS buffer, and live cells (propidium iodide-excluding) were analyzed by flow cytometry.
myc- 2m Inhibition Assay--
The inhibition assay
is identical to the binding assay with the following modifications: 2.5 µM myc- 2m was used in all cases, and
different concentrations of non-myc-labeled recombinant
2m were included to inhibit myc- 2m
binding to cell surface MHC molecules. The percentage of inhibition was
calculated by the following equation: (1 ((experimental background)/(no inhibitor background))) × 100. 10,000-20,000
gated events/sample were counted, and all experiments were repeated at
least twice. ID50 values were calculated using a sigmoid
logistic fit.
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RESULTS |
2m Enhances CTL Recognition of Target Cells and
Exogenous Peptide Loading--
The effectiveness of 2m
in facilitating exogenous peptide loading of MHC I molecules was
measured using a CTL lysis assay. Target cell lysis not only correlates
with the loading of a specific peptide antigen, but it also
demonstrates that the peptide is bound in an immunologically relevant
manner. Hmy2.C1R-A2 target cells (a human lymphoblastoid cell
essentially null for HLA molecules except for the transfected HLA-A2.1)
(40, 41) were pulsed with a suboptimal concentration of HTLV-1 TAX
peptide for 90 min in SF CTL medium in the absence or presence of
increasing concentrations of purified, recombinant h 2m
and then used as targets in a conventional lysis assay. The presence of
h 2m dramatically increased the specific lysis by the
TAX-specific CTL clone in a dose-dependent fashion (Fig.
1). Lysis at the maximal amount of
h 2m in the presence of an irrelevant A2-binding peptide
was at background levels. Using this suboptimal concentration of
peptide, there was 20% lysis in the absence of 2m. The
addition of 8 µM 2m increased the lysis to
the maximum observed at this effector:target ratio. In the absence of
2m, a 50-100-fold higher concentration of peptide would
be required to achieve comparable levels of
lysis.3

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Fig. 1.
Enhancement of CTL recognition of target
cells by human 2m. Hmy2.C1R-A2 target cells were
pulsed with BATD (Europium chelator) for 30 min and washed in
serum-free CTL medium followed by incubation with a suboptimal dose of
TAX peptide (9.3 pM) with the indicated concentrations of
h 2m for 90 min. Target cells were washed and then
combined with the TAX-specific HLA-A2-restricted CTL clone N1218 at an
effector:target ratio of 4:1 for 2 h. 20 µl of supernatant was
harvested, added to 200 µl of Europium solution, and read on a Wallac
1234 DELFIA fluorometer. The specific lysis of target cells pulsed with
the irrelevant A2-binding HIV gag 77-85 peptide at 1 nM in the presence of 8 µM h 2m
was 29 ± 6%. All incubations were done at 37 °C.
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To directly demonstrate the effectiveness of h 2m to
enhance peptide loading of MHC I molecules, we measured the binding of a FITC-labeled, HLA-A2-restricted peptide (HIV RT 195-207) to Hmy2.C1R-A2 cells. As shown in Fig.
2a, the presence of
h 2m shifted the peptide titration curve approximately
50-fold compared with peptide loading in the absence of
h 2m, consistent with the magnitude of shift observed for
the augmentation of CTL lysis.

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Fig. 2.
Human 2m facilitates peptide
binding to cell surface HLA-A2. a, Hmy2.C1R-A2 cells
were centrifuged and resuspended in serum-free IMDM (SF IMDM) with the
indicated concentrations of the FITC-conjugated HLA-A2-restricted HIV
RT 195-207 peptide with ( ) or without ( ) 10 µM
h 2m for 17 h at 37 °C. Samples were washed twice
with 2 mg/ml BSA in PBS, resuspended, and analyzed by flow cytometry.
All values are expressed as mean fluorescence intensity. b,
individual histograms of cells incubated with 333 ng/ml FITC-peptide in
SF IMDM with or without 10 µM h 2m.
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The S55V Mutation Enhances MHC Molecule Stability on the Cell
Surface--
Based on previous work, the region of h 2m
including the S5 strand was found to play an important role in the
higher affinity of h 2m for murine MHC I heavy chains
(26) and was the focus of our structural search for mutations to
increase the affinity of h 2m. Using the HLA-A2 crystal
structure (52),4 we
identified a hydrophilic serine residue at position 55 of h 2m that was buried at the h 2m/heavy
chain interface and was situated directly adjacent to an ordered water
molecule. This residue was substituted with hydrophobic residues of
increasing mass (valine and isoleucine) in order to promote hydrophobic
interactions and exclude the ordered water. The valine side chain was
chosen, since it is approximately the volume of a serine side chain
hydrogen-bonded to a water molecule. Serine 55 was also changed to
isoleucine, since it was unclear if and how the hydrophobic residues
would pack in relation to other side chains at the
h 2m/heavy chain interface.
We initially used an HLA stabilization assay (36, 37) to screen the
2m variants. Since there can be significant
allele-specific differences in the ability of h 2m point
mutants to stabilize murine heavy chains3 (26) a number of
HLA alleles, HLA-A1, HLA-A2, and HLA-A3, were analyzed in order to
determine the generality of any observed effects.
Fig. 3 demonstrates the ability of the
S55 substituted 2ms to stabilize HLA-A1 (Fig.
3a), HLA-A2 (Fig. 3b), and HLA-A3 (Fig. 3,
c and d) in the presence of a specific binding
peptide and an appropriate HLA-specific antibody. The S55V variant
(Fig. 3, ×) stabilized HLA-A1 and HLA-A3 approximately 2- and 3-fold
better, respectively, than wild-type h 2m
(diamonds) at a molar level, and effects on HLA-A2
stabilization by S55V were only slightly better than those observed
with wild-type h 2m. The effects of S55I
(triangles) varied depending on the allele: better along the
upper end of the titration curve with HLA-A1, worse with HLA-A2, and
marginally better with HLA-A3. We have previously demonstrated that a
single mutation at residue 53 (D53N or D53V) of h 2m
decreased the affinity of its interaction with murine heavy chains,
presumably by disruption of a conserved, coordinated ionic bond (26).
As was observed with murine heavy chains, both Asp53
mutants (circles and stars) were deficient
relative to wild-type h 2m at stabilizing all three human
heavy chain alleles.

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Fig. 3.
The stabilization of cell surface HLA-A1,
-A2, and -A3 by mutant 2m. Cells stripped of their
endogenous 2m and peptide were combined with the
indicated concentrations of mutant or wild-type h 2m with
peptide and a 2m/peptide-dependent mAb for
4 h at 23 °C. , wild-type h 2m; , S55I; ×,
S55V; *, D53N; , D53V. Cells were washed, stained with FITC-labeled
anti-murine IgG, and then analyzed by flow cytometry. All values are
expressed as mean fluorescence intensity. HLA-A1-transfected Hmy2.C1R
cells (a) were combined with BB7.5 mAb and 10 µg/ml
A1-binding OD 309 peptide. HLA-A2-transfected Hmy2.C1R cells
(b) were combined with BB7.5 mAb and 2.5 µg/ml A2-binding
HIV gag peptide. HLA-A3 transfected Hmy2.C1R cells were
combined with BB7.5 (c) or GAP.A3 (d) mAb and
1.25 µg/ml A3-binding pn2a.A3 peptide. Panel d
displays error bars corresponding to the S.D.
values of three independent data points.
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We observed a decline in the stabilization of all three MHC I alleles
at the highest concentrations of 2m tested when using mAb BB7.5 (Fig. 3, a-c). The choice of this mAb for the
stabilization experiments in Fig. 3 was determined by the mAb's
dependence on both 2m and peptide for the formation of
the epitope as well as the fact that it was reactive with all three
alleles studied. Similar high dose inhibition was also observed even
when freshly isolated cells were incubated on ice in the presence of
BB7.5,3 suggesting that this effect was due to inhibition
of BB7.5 binding by free 2m in solution, consistent with
2m forming part of the combinatorial BB7.5 epitope (53).
Using an alternative, HLA-A3-specific mAb to compare wild-type
h 2m and S55V, no inhibition was observed (Fig.
3d). Further, the 2.5-fold molar increase in the ability of
the S55V mutant to stabilize HLA-A3 was consistent with the 3-fold
increase when using BB7.5 (Fig. 3c). Interestingly, the pan-HLA-ABC-specific mAb W6/32 could not be used due to its inability to bind MHC complexes containing recombinant 2m, which
have an additional methionine at the amino terminus (38).
The Peptide Dependence of h 2m Binding and Its
Augmentation by S55V--
The antibodies used in Fig. 3 were selected
due to their dependence on both 2m and peptide in order
to detect "complete" molecules, i.e. heavy
chain· 2m·peptide natively folded trimeric complexes.
Since this binding assay required the presence of an antibody in
addition to 2m and peptide (37), there was formally the
possibility that the antibodies exerted an effect that was specific for
a particular 2m mutant such as S55V. Due to previously reported concerns regarding the potential contribution of the antibodies to the stabilization of cell surface MHC I complexes (54),
we extended the stabilization studies by developing a binding
inhibition assay that directly measured the relative abilities of
2ms to bind to MHC I molecules. To do this we engineered
an epitope tag (myc) onto the amino terminus of h 2m so
that its binding could be directly measured with the anti-myc mAb 9E10. The addition of this tag to the amino terminus was preferable to
biotinylation, iodination, or other labeling procedures that could
variably alter residues involved in heavy chain/ 2m
interactions and therefore require further purification (55).
Hmy2.C1R cells transfected with HLA-A1, -A2, or -A3 alleles were
incubated overnight in SF medium with increasing concentrations of
myc- 2m (Fig. 4). In the
presence of an appropriate peptide, there was
concentration-dependent myc- 2m binding for
all alleles studied. However, when cells were incubated with
myc- 2m in the absence of peptide, very little
myc- 2m binding was observed. It should be noted that
these experiments were conducted for 16 h, whereas comparable or
even greater binding of human or murine 2m to murine MHC
I molecules occurred in only 2 h even in the absence of
peptide.5 This suggests some
fundamental differences in the stability and behavior of murine and
human MHC I molecules.

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Fig. 4.
The binding of myc- 2m to cell
surface HLA-A1, -A2, and -A3. Hmy2.C1R-A1 (a), -A2
(b), and -A3 (c) cells were incubated with the
indicated concentrations of myc- 2m with ( ) or without
( ) 20 µg/ml peptide in serum-free IMDM for 16 h at 37 °C.
After washing away free myc- 2m, cells were stained with
9E10 (anti-myc) culture supernatant, stained with FITC-labeled
anti-murine IgG, and then analyzed by flow cytometry. All values are
expressed as mean fluorescence intensity.
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Having established conditions in which myc- 2m binding
could be demonstrated, the relative abilities of wild-type
h 2m and S55V to inhibit the binding of
myc- 2m to HLA molecules were next compared (Fig.
5). Compared with wild-type
h 2m, the S55V mutant inhibited myc- 2m
binding about 2-fold better at a molar level for HLA-A1, -A2, and -A3.
These results are consistent with a higher relative affinity of the
S55V mutant compared with wild-type h 2m for HLA-A1, -A2,
and -A3.

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Fig. 5.
Inhibition of myc- 2m binding
by S55V and h 2m to cell surface HLA-A1, -A2, and
-A3. Hmy2.C1R-A1 (a), -A2 (b), and -A3
(c) cells were incubated with 2.5 µM
myc- 2m and 20 µg/ml peptide in serum-free IMDM with
the indicated concentrations of inhibitor wild-type h 2m
( ) or S55V ( ) for 16 h at 37 °C. The OD 309 peptide was
used for HLA-A1, the HIV gag peptide for HLA-A2, and the
pn2a.A3 peptide for HLA-A3. After washing away free 2m,
cells were stained with 9E10 (anti-myc) culture supernatant, stained
with FITC-labeled anti-murine IgG, and then analyzed by flow cytometry.
All values are expressed as mean fluorescence intensity. The 50%
inhibitory dose values were calculated for each curve and listed with
their respective graphs.
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The S55V Mutant Enhances Peptide Loading and CTL
Recognition--
Having established the higher relative affinity of
the S55V mutant for HLA-A1, -A2, and -A3, we next studied its ability
to enhance the loading of peptide onto Hmy2.C1R-A2 cells directly with
the FITC-labeled HIV RT peptide. In the presence of a limiting concentration of FITC-peptide (100 ng/ml; see Fig. 2a),
h 2m and S55V were titered onto cells to measure their
ability to enhance exogenous peptide loading (Fig.
6). The S55V mutant was approximately 2-fold more effective on a molar basis than wild-type
h 2m at promoting peptide binding. When binding was
examined over a wide range of peptide concentrations, the
ED50 values in the presence of an almost saturating
concentration of h 2m and S55V (10 µM) were
54- and 77-fold greater, respectively, than observed in the absence of
2m (Table I).

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|
Fig. 6.
The S55V mutant augments peptide binding at
limiting peptide concentrations relative to wild-type
h 2m. Hmy2.C1R-A2 cells were centrifuged and
resuspended in serum-free IMDM with 100 ng/ml of the FITC-conjugated
HIV RT peptide and titrations of wild-type h 2m ( ) or
S55V ( ) for 17 h at 37 °C. Samples were washed twice with 2 mg/ml BSA in PBS, resuspended, and analyzed by flow cytometry. All
values are expressed as mean fluorescence intensity.
|
|
View this table:
[in this window]
[in a new window]
|
Table I
Peptide binding to cell surface HLA-A2: effects of h 2m and
S55V
FITC-labeled HIV RT peptide (HLA-A2-restricted) was incubated from
0.457 to 27,000 ng/ml in serum-free medium with Hmy2.C1R-A2
transfectants in the presence or absence of 10 µM
h 2m or S55V for 17 h. Samples were then washed twice
and analyzed by flow cytometry. ED50 values were calculated
using a sigmoid logistic fit.
|
|
The augmented ability of the S55V variant to enhance exogenous peptide
loading of cells suggested that these cells would also be better
targets for CTL recognition. To test this possibility, two CTL clones,
specific for an HTLV-1 TAX peptide in the context of HLA-A2 and an
influenza nucleoprotein peptide in the context of HLA-A3, were used in
a standard lysis assay of Hmy2.C1R transfectants pulsed with a
suboptimal concentration of antigenic peptide. The S55V mutant was
4-fold more effective at a molar level than wild-type 2m
at enhancing target cell lysis for HLA-A2 (Fig.
7a) and 6- to 7-fold better
for HLA-A3 (Fig. 7b). Controls with irrelevant HLA-A2 and
HLA-A3 binding peptides with the highest concentrations of
2m used resulted in only background levels of killing.
Additionally, multiple TAX-specific A2-restricted clones displayed
similar levels of S55V-enhanced killing relative to wild-type
2m (data not shown).

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|
Fig. 7.
Enhanced target cell lysis mediated by the
S55V mutant. The S55V mutant enhances CTL recognition better than
wild-type h 2m. Hmy2.C1R-A2 (a) or Hmy2.C1R-A3
(b) target cells were pulsed with BATD (Europium chelator)
for 30 min and washed in SF CTL medium followed by incubation with a
suboptimal dose of TAX peptide (9.3 pM) or control
A2-binding HIV gag peptide at 1 nM with the
indicated concentrations of 2m for 90 min (a)
or with a suboptimal dose of NP 265-273 peptide (100 pM)
or control A3-binding pn2a.A3 peptide at 1 µM with the
indicated concentrations of 2m for 60 min
(b). Target cells were washed and then combined with the
TAX-specific HLA-A2-restricted CTL clone N1218 at an effector:target
ratio of 4:1 (a) or the NP-specific HLA-A3 restricted CTL
clone 2711 at an effector:target ratio of 2:1 (b) for 2 h. 20 µl of supernatant was harvested, added to 200 µl of Europium
solution, and read on a Wallac 1234 DELFIA fluorometer. All incubations
were done at 37 °C.
|
|
 |
DISCUSSION |
MHC I molecules have evolved to present endogenously derived
antigens and are relatively refractory to peptide loading unless 2m is present (22, 23, 56-58). Data presented in Figs.
1-3 demonstrate the extent to which 2m facilitates
peptide loading and MHC stability. In the absence of 2m,
up to 100-fold higher concentrations of peptide are required to achieve
similar levels of peptide loading and target cell lysis. Since peptides
can only bind to MHC I molecules already devoid of peptide and since
these empty molecules are normally very unstable (23), the mechanism of
exogenous 2m's effect on peptide binding is probably
via the prolongation of the cell surface half-life of empty MHC I
molecules. Therefore, if the exogenous 2m concentration
is high enough or, alternatively, of high enough affinity, then these
empty "peptide-receptive" molecules may remain available on the
surface long enough for exogenously added peptide to bind. This
2m effect may even be more pronounced in vivo
when peptide is administered as a vaccine, because diffusion and/or
degradation of these peptides would greatly limit the amount available
for cell surface binding. Additionally, a higher affinity
2m could result in decreased dissociation rates of
peptide·MHC complexes (a longer cell surface half-life) and, therefore, an increased antigen density of the relevant antigenic MHC
complexes.
The higher affinity of h 2m for murine MHC heavy chains
(31) increases the amount and stability of cell surface MHC I complexes that can be exogenously loaded with antigenic peptide relative to
m 2m (26). The resulting antigenic peptide·murine
MHC·h 2m complexes that are longer lived would be more
likely to induce cell-mediated immune responses. In fact,
peptide-specific MHC I-restricted CTL have been successfully elicited
in mice by in vivo injection of peptide in the presence but
not the absence of h 2m (59). Murine 2m is
far less efficient at stabilizing cell surface MHC I, presumably due to
its lower affinity interaction with heavy chains (26, 31). It might
therefore be predicted that in vivo immunization of mice
with peptide and murine 2m would have been much less
effective or not effective at all. Additionally, the use of a
xenogeneic 2m (human) in mice raises the possibility that processing and presentation of h 2m-derived helper
epitopes may have contributed to the reported responses. Clearly,
contributions of CD4-derived help must be considered in the design of
peptide-based vaccines. Currently, in vivo studies are under
way to investigate these questions.
Although some studies demonstrate that peptide and 2m
exchange can be independent or even antagonistic (60-62), these data clearly demonstrate the enhancement of peptide binding by
h 2m. It should also be noted that the system reported
here employs human 2m and human MHC I molecules,
while previous reports dealt exclusively with the murine equivalents
(62) or h 2m with murine MHC I molecules (60, 61).
There are notable differences between the abilities of
h 2m to exchange onto human MHC I molecules
versus m 2m exchanging onto murine MHC I
molecules. The myc- 2m binding experiments in Fig. 4
require 16 h incubations in the presence of peptide to demonstrate
significant 2m binding. In contrast, comparable binding of m 2m to murine MHC I molecules is observed within
2 h, even in the absence of peptide (26). Another study
demonstrated that up to 5% of HLA molecules on normal T cells
exchanged directly fluoresceinated h 2m (35). The authors
noted that HLA-A2 on transfected C1R lymphoblastoid cells (such as
those used in this study) exchanged much less h 2m than
did normal human T cells (35). Based on our study, this exchange would
likely be greatly increased in the presence of an A2-restricted
peptide. The relatively small amount of peptide-independent exchange
demonstrated in the human system was in great contrast to that noted
for murine cells (35), consistent with our findings (26). Additionally,
others have shown that HLA-A3 and HLA-B27 transfected into the
TAP-deficient T2 or RMA-S cells are refractory to peptide and
2m loading, while the murine alleles H-2Kb
and H-2Db are effectively stabilized (63).
If the exogenous loading characteristics of murine and human MHC I
molecules are fundamentally different, it may be advantageous or even
necessary to use mice transgenic for human MHC I and h 2m (64-70) in the development of human peptide-based vaccine protocols. The synergy of loading peptide in the presence of higher affinity 2ms and the requirement of h 2m to induce
CTL in mice (59) indicates the importance of testing immunization
regimens with native h 2m and higher affinity variants of
2m. Therefore, the engineering of higher affinity
variants of human 2m represents a significant
complementary approach to defining immunodominant epitopes and MHC
supermotifs for the development of peptide-based vaccines for the
treatment of tumors and viruses.
The ability of 2m to bind and stabilize MHC I molecules
is clearly related to its relative affinity for the MHC I heavy chains (26). For the development of murine vaccination models, the availability of a naturally occurring higher affinity 2m
(h 2m) provides this essential component (31, 59). In
contrast, there are no known naturally occurring 2ms
available with higher affinity for human MHC I heavy chains than
h 2m. The availability of three-dimensional structural
data for a number of MHC I molecules as well as our previous studies
examining chimeric m 2m/h 2m molecules (26) led to the identification of a specific region and, ultimately, a
single residue of 2m (serine 55) to mutate in order to
increase its affinity for human MHC I heavy chains.
The identification of the S55V mutant was aided in large part by the
availability of a three-dimensional crystal structure for MHC I
molecules and underscores the importance and utility of advances in the
field of structural biology. In the HLA-A2 structure, serine 55 of
2m (at the 2m/heavy chain interface) is
directly adjacent to an ordered water molecule (52).4 Our
earlier work suggested that residue changes that promoted protein/protein interactions (e.g. formation of salt
bridges) could predictably improve stability between the two MHC I
subunits. Since hydrophobic interactions contribute significantly to
the overall stability of proteins (71, 72) and the exclusion of water
molecules from an otherwise hydrophobic interface would result in a
gain of entropy and make the interaction more thermodynamically favorable (72), we mutated the Ser55 residue to the
hydrophobic residues valine and isoleucine. By making these variants,
we maximized the opportunity to occupy the hydrophobic cavity without
sterically hindering the 2m/heavy chain interaction.
By four different criteria (MHC complex stabilization,
2m binding, peptide binding, and CTL activity), we have
demonstrated that the S55V mutant of human 2m binds to
human MHC I molecules and enhances the loading of antigenic peptide to
a greater extent than wild-type h 2m. Moreover, this
higher affinity has been shown to be a general feature for the HLA-A
alleles, since it has been extended to all three HLA-A alleles studied.
The combination of HLA-A1, -A2, and -A3 is represented in 30-70% of
the population, depending on factors such as ethnicity and country of
origin (73, 74), suggesting that the S55V mutant may find broad
clinical utility in combination with antigenic HLA supermotif peptides that have been selected based on their ability to bind multiple HLA
alleles (1-4).
It will be interesting to determine the effect the S55V mutant
2m will have on the stability of lower affinity
peptides. The qualitative and quantitative effects of the higher
affinity of S55V may prolong the stability of MHC complexes exogenously loaded with lower affinity antigenic peptides on the cell surface, thereby allowing for the induction of cell-mediated responses to
cryptic, subdominant, and marginally antigenic peptides. The generation
of these responses could serve to eliminate neoplasms and some virally
infected cells (e.g. HIV or herpes) that otherwise might
evade detection. Coupled with an appropriate regimen to induce a strong
cell-mediated immune response, a patient could be cleared of tumors and
acquire protective immunity to viruses without the necessity of
immunization with the neoplasms/pathogens themselves. Thus, in concert
with efforts identifying antigenic T cell epitopes (5-9) and antigenic
MHC supermotif peptides (1-4), h 2m and higher affinity
variants may find global utility in the development of effective, novel
peptide-based vaccine protocols to treat both tumors and viral
infections.
 |
ACKNOWLEDGEMENTS |
We thank Drs. Jonathan Ashwell,
Jonathan Yewdell, Charles Zacharchuck, and Allan Weissman for
suggestions and critical review of this manuscript.
 |
FOOTNOTES |
*
The costs of publication of this
article were defrayed in part by the
payment of page charges. The article
must therefore be hereby marked
"advertisement" in
accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
§
Supported by the NCI, National Institutes of Health (NIH),
Biotechnology Training Program.
Supported by the NCI (NIH) Summer Research Training Fellowship
Program.
**
To whom all correspondence should be addressed: Molecular
Applications Group, 11800 Dewey Rd., Silver Spring, MD 20906-4881. Tel.: 301-946-8035; Fax: 301-946-8036, E-mail: rkr{at}mag.com.
The abbreviations used are:
MHC, major
histocompatibility complex; 2m, 2-microglobulinh 2m, human
2-microglobulinm 2m, murine
2-microglobulinCTL, cytotoxic T lymphocyteSF, serum-freeBATD, bis(acetoxymethyl)2,2':6',2"-terpyridine-6',6"-decarboxylateBSA, bovine serum albuminHTLV-1, human T cell lymphotrophic virus-1FITC, fluorescein isothiocyanateAb, antibodymAb, monoclonal antibodyHIV, human immunodeficiency virusIMDM, Iscove's modified Dulbecco's
mediumFACS, fluorescence-activated cell sortingPBS, phosphate-buffered salineRT, reverse transcriptase.
2
Available on the World Wide Web at
http://cancernet.nci.nih.gov/ prot/menu/dx01302.html.
3
M. J. Shields, unpublished
observations.
4
Protein Data Bank (Brookhaven National
Laboratory, Upton, NY) code 3HLA.
5
M. J. Shields and R. K. Ribaudo,
manuscript in preparation.
 |
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