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J Biol Chem, Vol. 273, Issue 44, 29135-29142, October 30, 1998
Anchor Structure of Staphylococcal Surface Proteins
II. COOH-TERMINAL STRUCTURE OF MURAMIDASE AND
AMIDASE-SOLUBILIZED SURFACE PROTEIN*
William Wiley
Navarre §,
Hung
Ton-That ,
Kym F.
Faull¶ , and
Olaf
Schneewind **
From the Department of Microbiology and Immunology
and the ¶ Department of Psychiatry and Biobehavioral Sciences,
UCLA School of Medicine, Los Angeles, California 90095
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ABSTRACT |
Surface proteins of the Gram-positive organism
Staphylococcus aureus are anchored to the bacterial cell
wall by a transpeptidation mechanism during which the polypeptide is
cleaved between the threonine (T) and the glycine (G) of the
LPXTG motif. The carboxyl of threonine is subsequently
amide linked to the amino of the pentaglycyl cross-bridge within the
staphylococcal peptidoglycan. Previous work examined the anchor
structure of surface proteins solubilized from the peptidoglycan by
treatment with lysostaphin or 11 hydrolase and identified
COOH-terminally linked triglycyl or
L-Ala-D-iGln-L-Lys(Gly5)-D-Ala
and
MurNAc-[L-Ala-D-iGln-L-Lys(Gly5)-D-Ala]( 1-4)-GlcNAc, respectively. Here, we report the anchor structure of surface proteins
solubilized with N-acetylmuramidase and
N-acetylmuramyl-L-alanine amidase.
N-Acetylmuramidase-released surface protein was linked to
MurNAc-[L-Ala-D-iGln-L-Lys(Gly5)-D-Ala]( 1-4)-GlcNAc,
whereas N-acetylmuramyl-L-alanine amidase
treatment of the cell wall solubilized surface proteins linked to
L-Ala-D-iGln-L-Lys(Gly5)-D-Ala.
Most, but not all, anchor structures were cross-linked to other cell wall subunits, in which the D-alanyl at position four was
amide linked to the pentaglycyl of a neighboring wall peptide.
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INTRODUCTION |
Proteins displayed on the surface of Staphylococcus
aureus are covalently linked to the peptidoglycan by a mechanism
requiring a COOH-terminal sorting signal (1). Previous work on
staphylococcal protein A revealed that the 35-residue sorting signal is
composed of an LPXTG motif, a hydrophobic domain, and a
COOH-terminal tail of mostly positively charged residues (1). Sorting
signals with similar structure have been identified in many surface
proteins of several different Gram-positive species (2, 3). When expressed in S. aureus, these sorting signals function to
anchor hybrid reporter proteins to the peptidoglycan (2). Thus, surface protein anchoring to the bacterial cell wall appears to be a universal mechanism in Gram-positive organisms.
Bacterial cell wall (murein) is a heteropolymer containing glycan and
peptide components (4). The glycan chains consist of a repeating
disaccharide,
N-acetylmuramyl-( 1-4)-N-acetylglucosamine (MurNAc-GlcNAc)1 (5). The
lactyl of N-acetylmuramyl is amide linked to the amino of
L-alanyl within the wall peptide
(NH2-L-Ala-D-iGln-L-Lys-D-Ala-D-Ala-COOH) (6-9). Wall peptides of neighboring peptidoglycan strands can be
cross-linked by a transpeptidation mechanism during which the terminal
D-alanine is cleaved, and the liberated carboxyl of
D-alanyl at position four is amide linked to the free amino
of the cell wall cross-bridge (10). In staphylococci, the cross-bridge
consists of five glycyl linked to the -amino of lysyl in the wall
peptide [MurNAc-(L-Ala-D-iGln-L-Lys(NH2-Gly5)-D-Ala-D-Ala-COOH)-( 1-4)-GlcNAc] (11, 12). Other bacteria employ either the -amino itself or
incorporate other amino acids into the cross-bridge (13). Cross-linking, i.e., the transpeptidation reaction, is
catalyzed by penicillin binding proteins and can be inhibited by
-lactam antibiotics (6, 14, 15). About 99% of wall peptides within the staphylococcal cell wall are cross-linked (12).
Covalent attachment of surface proteins to the staphylococcal cell wall
also occurs by a transpeptidation mechanism, whereby the sorting signal
is cleaved between the threonine (T) and the glycine (G) of the
LPXTG motif upon export of the polypeptide from the
bacterial cytoplasm (16). The carboxyl of threonine is subsequently
amide linked to the pentaglycyl cross-bridge of the staphylococcal cell
wall (17). Previous work investigated the anchor structure of surface
proteins that were released from the cell wall of S. aureus
by enzymatic cleavage of the peptidoglycan at unique sites. Lysostaphin
cut at the pentaglycyl cross-bridge and released surface protein with
two or three glycyl linked to the carboxyl of threonine (T) in the
LPXTG motif (17, 18). Digestion with the murein hydrolase of
staphylococcal phage 11 released surface protein as two species, one
of which contained the branched anchor peptide
NH2-L-Ala-D-iGln-L-Lys(Gly5)-D-Ala-COOH linked to the carboxyl of threonine, whereas the other harbored an
additional disaccharide moiety
(MurNAc-(L-Ala-D-iGln-L-Lys(NH2-Gly5)-D-Ala-D-Ala-COOH)-( 1-4)-GlcNAc) (18).
Analysis of the predicted amino acid sequence of 11 hydrolase
revealed homology to known
N-acetylmuramyl-L-alanine amidases (19).
Assuming the 11 enzyme functioned as an
N-acetylmuramyl-L-alanine amidase, we previously
proposed that staphylococcal surface proteins may be linked to
unsubstituted (non-cross-linked) cell wall tetrapeptide (18). This
interpretation is in disagreement with the observed high degree of
cross-linking of staphylococcal peptidoglycans (12, 20-22). To address
this issue, we purified and characterized anchor peptides of surface
proteins that were released from the staphylococcal peptidoglycan by
treatment with mutanolysin, an N-acetylmuramidase of
Streptomyces globisporus (23, 24), as well as two other
N-acetylmuramyl-L-alanine amidases, autolysin (Atl) of S. aureus (25) and cell wall lysin A (CwlA) of
Bacillus subtilis, respectively (26-28). The data revealed
that surface proteins were linked mostly to cross-linked cell wall
tetrapeptide. We report elsewhere that 11 hydrolase displayed
N-acetylmuramyl-L-alanine amidase as well as
D-alanyl-glycine endopeptidase activity, thereby releasing
surface protein linked to unsubstituted cell wall
tetrapeptide.2 We present a
refined model of the cell wall anchor structure that accounts for the
observed solubilization patterns of surface proteins with murein
hydrolases.
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EXPERIMENTAL PROCEDURES |
Strains and Materials--
S. aureus OS2 (pHTT4) was
employed for all preparations of staphylococcal cell wall with linked
Seb-MH6-Cws (18). Escherichia coli XL1-Blue was
used for the expression of CwlA (29). The coding sequence of the
B. subtilis cwlA amidase (27) was polymerase chain
reaction amplified from B. subtilis MN202 chromosomal
DNA using the primers BSA-1 (AAAGGATCCATTAAAGTTGTAAAGAATCTA) and BSA-2 (AAACTGCAGTTACTTCAAGAGAGCTTCAAGT). The polymerase chain reaction product was digested with BamHI and PstI and
cloned into the corresponding sites of pQE30 (Qiagen) to generate
pWil50. Tryptic soy broth (TSB) was purchased from Difco. Mutanolysin
(Sigma) and lysostaphin (Ambi, UK) were purchased and used as
recommended by the supplier.
Preparation of Staphylococcal Cell Walls--
6 liters of
S. aureus OS2 (pHTT4) culture were grown overnight in
tryptic soy broth (10 µg/ml chloramphenicol). The cells were
harvested by centrifugation at 10,000 × g for 15 min,
and the supernatant was discarded. Staphylococci were washed in 50 ml
of 50 mM Tris-HCl, pH 7.5, and suspended in the same buffer supplemented with 1 µM pepstatin and 5 mM
PMSF. Cell walls were broken with a Bead-Beater instrument (Biospec
Products; Bartlesville, OK) by 15 pulses of 40 s each followed by
a 5-min incubation period on ice. The lysate was cleared by
ultracentrifugation at 32,500 × g for 15 min, and the
supernatant was discarded. The sediment was suspended in 50 ml of wash
buffer (100 mM potassium phosphate, pH 7.5, 1% Triton
X-100, 1 mM PMSF, 1 µM pepstatin), and
membrane detergent was extracted by stirring for 3 h at 4 °C.
The cell walls were sedimented by centrifugation for 15 min at
32,500 × g, washed three times with 100 mM
sodium phosphate, pH 6.0, and once with water, and pellets were stored
at 80 °C.
Solubilization and Purification of Surface
Proteins--
Mutanolysin was suspended at a concentration of 5,000 units/ml in 100 mM sodium phosphate, pH 6.0, containing 1 mM PMSF and stored at 20 °C. Cell walls were suspended
in 100 mM sodium phosphate buffer, usually 30 ml per
peptidoglycan from 6 liters of culture; 10,000 units of mutanolysin, 1 mM PMSF, and 1 µM pepstatin were added
followed by a 14-h incubation period at 37 °C. Insoluble material
was removed by centrifugation at 32,500 × g for 15 min. The supernatant was adjusted to pH 8.0 by adding 1 M
Tris-HCl, pH 10.0.
Gst-Atl, a hybrid between glutathionine S-transferase and
staphylococcal Atl amidase (25), has been constructed and described elsewhere (30). An overnight culture of E. coli strain
BL21(DE3)(pGst-Atl) was diluted 1:50 into 2 liters of fresh LB medium
containing 100 µg/ml ampicillin, incubated with shaking for 3 h
at 37 °C, and induced with 1 mM
isopentenyl- -thiogalactoside for another 2 h. Cells were
harvested by centrifugation at 8000 × g for 15 min, washed with 25 ml of 50 mM Tris-HCl, pH 7.5, suspended in
25 ml of F buffer (20% sucrose, 150 mM NaCl, 1 mM dithiothreitol, 1% Triton X-100, 0.03% SDS, 100 mM Tris-HCl, pH 8.0), and lysed by a single pass through a
French press at 6000 psi. Unbroken cells and insoluble material were
removed by two centrifugation steps at 20,000 × g for
30 min. The supernatant was subjected to affinity chromatography on
glutathione-Sepharose (30, 31). To prepare extracts containing
His6-CwlA, an overnight culture of E. coli XL1-Blue (pWil-50) was subcultured 1:50, incubated with shaking at
37 °C for 3 h, and induced with 1 mM
isopropylthiogalactopyranoside for another 3 h. Cells were
harvested by centrifugation at 10,000 × g for 15 min,
suspended in 50 ml of 50 mM Tris-HCl, pH 7.5, and lysed by
a single pass through the French press at 6000 psi. Insoluble material
was removed by two centrifugation steps at 20,000 × g
for 10 min. The soluble extract was frozen and stored at 80 °C for
future use. For amidase digestion, purified cell walls were suspended
in 30 ml of 50 mM Tris-HCl, pH 7.5. To this, 5 mg of
purified Gst-Atl or 5 ml of His6-CwlA containing E. coli extract were added and incubated for 16 h at
37 °C.
Cell wall digests were cleared by two centrifugation steps at
32,500 × g for 15 min. The supernatant was loaded onto
a column packed with 1 ml of Ni-NTA resin (Qiagen) equilibrated with 10 ml of buffer Y (10% glycerol, 150 mM NaCl, 50 mM Tris-HCl, pH 7.5) at a flow rate of 0.5 ml/min. After
loading, the column was washed with 10 ml of buffer Y followed by 15 ml
of 2% buffer Z (buffer Y supplemented with 500 mM
imidazole) in buffer Y. Seb-MH6-Cws was eluted by a step
gradient with 50% buffer Z in buffer Y. Absorbance was monitored at
280 nm, and peak fractions were analyzed for the presence of purified
surface protein by 12% SDS-PAGE.
Preparation of COOH-terminal Anchor Peptides--
Purified
Seb-MH6-Cws was precipitated by the addition of an equal
volume of methanol:chloroform (5:1) and centrifuged for 10 min at
11,000 × g (32). The aqueous phase was discarded, 1 volume of methanol was added to the supernatant and vortexed, and
protein was sedimented by centrifugation for 10 min at 11,000 × g. The supernatant was discarded, and the precipitate was
washed with 1 volume of methanol. Pellets were dried under vacuum in a
Speed-Vac concentrator (Savant), and protein was dissolved in 1-3 ml
of 70% formic acid. About 5 mg of CnBr crystal was added, and the
cleavage reaction was incubated for 16-18 h at room temperature in the
dark. Samples were dried under vacuum and washed twice with 0.5 ml of
water. Pellets were dissolved in 1-2 ml of buffer A (6 M
guanidine hydrochloride, 0.1 M
NaH2PO4, 0.01 M Tris-HCl, pH 8.0)
and loaded onto a column packed with 1 ml of Ni-NTA Sepharose pre-equilibrated with 10 ml of buffer A. The column was washed with 10 ml of each buffer A, buffer B (8 M urea, 100 mM
NaH2PO4, 0.01 M Tris-HCl, pH 8.0),
and buffer C (same as buffer B, but pH 6.3). Peptides were eluted with
2 ml of buffer D (6 M guanidine hydrochloride, 0.5 M acetic acid, pH 4.3) and subjected to RP-HPLC on C18
column (2 × 250 mm, C18 Hypersil, Keystone Scientific). Separation was carried out at 40 °C with a flow rate of 0.2 ml/min and a linear gradient starting 10 min after injection from 99% H2O, 0.1% trifluoroacetic acid to 60% H2O,
0.1% trifluoroacetic acid, and 40% CH3CN in 35 min
followed by a steep gradient to 99% CH3CN in 5 min. Eluate
absorbance was monitored at 215 nm, and 1-min fractions were
collected.
MALDI-MS--
Dried HPLC fractions were suspended in
CH3CN:water:trifluoroacetic acid (50:50:0.1), typically 50 µl per 1.5 absorbance units at 215 nm. MALDI-MS spectra were obtained
on a reflectron time-of-flight instrument (PerSeptive Biosystems
Voyager RP) in the linear mode. Samples (0.5 µl) were co-spotted with
0.5 µl of matrix ( -cyano-4-hydroxycinnamic acid, 10 mg/ml in
CH3CN:water:TFA (70:30:0.1)). All samples were externally
calibrated to a standard of bovine insulin.
HPLC Separation of Muropeptides--
Anchor peptides solubilized
with either Gst-Atl or mutanolysin were reduced by treatment with
sodium borohydride (33). After HPLC purification on C18 column, anchor
peptides were dried and suspended in 200 µl of water. To the
peptides, 200 µl of 0.5 M sodium borate buffer, pH 9.0, was added followed by the immediate addition of 1-3 mg of solid sodium
borohydride. The reaction was incubated for 30 min at room temperature
and quenched by the addition of 20 µl of 20% phosphoric acid.
Reduced peptides were desalted over a C18 cartridge (Analtech), dried
under vacuum, and suspended in 50 mM Tris-HCl, pH 7.5. The
glycyl-glycine endopeptidase lysostaphin (Ambi) was added at a
concentration of 200 µg/ml and incubated overnight at 37 °C.
Lysostaphin digestion was terminated by the addition of trifluoroacetic
acid to a concentration of 10%. Samples were placed on ice to
precipitate lysostaphin, which was separated from the soluble
muropeptides by centrifugation at 15,000 × g for 15 min. Separation of muropeptides by RP-HPLC on C18 column (2 × 250 mm, C18 Hypersil, Keystone Scientific) was carried out using a method
devised for E. coli wall peptides (33, 34) and modified for
the separation of S. aureus muropeptides (35). Briefly,
peptides were chromatographed by a linear reversed phase gradient from
5% (v/v) methanol in 100 mM
NaH2PO4 (pH 2.5) to 30% (v/v) methanol in 100 mM NaH2PO4 (pH 2.8) in 100 min.
Baseline drift was accounted for by subtracting the chromatogram of a
blank run. Eluate absorbance was monitored at 206 nm, and peak
fractions were desalted using a C18 cartridge and dried under vacuum
prior to analysis by ESI-MS.
ESI-MS of Anchor Peptides--
Dried muropeptides were dissolved
in 30 µl of water:CH3CN:formic acid (50:50:0.1). A Perkin
Elmer Sciex API III triple quadrupole mass spectrometer was tuned and
calibrated by flow injection (10 µl/min) of a mixture of PPG 425, 1000, 2000 (3.3 × 10 5, 1 × 10 4,
and 2 × 10 4 M, respectively) in
water:methanol (1:1) containing 2 mM ammonium formate and
0.1% CH3CN. Calibration across the m/z range
10-2400 was achieved by multiple ion monitoring of eight PPG solution signals (singly charged ions at m/z 58.99, 326.25, 906.67, 1254.92, 1545.13, 1863.34, and 2010.47 and the doubly charged ion at
m/z 520.4). The ion spray voltage was operated at 4.5 kV
using hydrocarbon-depleted air for spray nebulization, and spectra were
generated with a curtain gas produced from the vapors of liquid
nitrogen. Samples were introduced into the ionization source by flow
injection. ESI-MS spectra were obtained at instrument conditions
sufficient to resolve the isotopes of the
PPG/NH4+ singly charged ion at m/z
906 with 40% valley, an orifice voltage of 60, and step size during
data collection of 0.3 Da. Daughter ion spectra were obtained using
degraded mass resolution to improve sensitivity of detection, and a
step size of 1 Da was used for data collection. Under these conditions,
the isotopes of the PPG/NH4+ single charged ion
at m/z 906 were not resolved from one another.
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RESULTS |
Solubilization of Surface Protein by Enzymatic Digestion of the
Staphylococcal Cell Wall--
Previous work developed an experimental
scheme for the analysis of anchor peptides of staphylococcal surface
proteins (18). The hybrid Seb-MH6-Cws contains the protein
A sorting signal fused to the COOH terminus of Seb. At the fusion
joint, a methionine followed by six histidines is inserted (Fig.
1). After enzymatic solubilization of the
staphylococcal cell wall, Seb-MH6-Cws is purified by
affinity chromatography on nickel Sepharose. COOH-terminal anchor
peptides are generated by CnBr cleavage at methionyl, purified by a
second round of affinity chromatography, and analyzed by mass
spectrometry.

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Fig. 1.
Enzymatic solubilization of
Seb-MH6-Cws from the staphylococcal
peptidoglycan. A, schematic diagram of
Seb-MH6-Cws harboring the sorting signal (Cws) of protein A
fused to the COOH terminus of Seb. The sorting signal contains an
LPXTG motif followed by a hydrophobic domain (black
box) and tail of mostly positively charged residues (boxed
+). At the fusion site with Seb, a methionine followed by six
histidines is inserted. After solubilization from the staphylococcal
cell wall, Seb-MH6-Cws is purified by affinity
chromatography on Ni-NTA Sepharose. CnBr cleavage at methionyl releases
COOH-terminal peptides that are isolated by another round of affinity
chromatography and analyzed for their linked cell wall structures.
B, diagram of the staphylococcal peptidoglycan illustrating
the sites of enzymatic hydrolysis for muramidase (M), lysostaphin (L),
amidase (A), and the staphylococcal phage 11 hydrolase (modified
after Strominger and Ghuysen (4)). The glycan chains are composed of
the repeating disaccharide N-acetylmuramic
acid-( 1-4)-N-acetylglucosamine (MN-GN). C,
Coomassie-stained 12% SDS-PAGE of Seb-MH6-Cws solubilized
from the peptidoglycan of S. aureus with lysostaphin (L),
mutanolysin (M), 11 hydrolase ( 11), Gst-Atl amidase (A, Atl), or
His6-CwlA amidase (A, CwlA). About 1 µg of purified
protein was loaded on each lane.
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Isolated staphylococcal peptidoglycan was digested with lysostaphin,
11 hydrolase, mutanolysin, autolysin, or lysin A, and purified
Seb-MH6-Cws was analyzed on Coomassie-stained SDS-PAGE (Fig. 1C). As previously observed, lysostaphin-cut
Seb-MH6-Cws migrated faster on SDS-PAGE than the two
species obtained after 11 hydrolase digestion (18). Mutanolysin, an
N-acetylmuramidase that cut at the 1-4 glycosidic
linkage between MurNAc and GlcNAc (23), solubilized
Seb-MH6-Cws as a spectrum of fragments with increasing
mass, all of which migrated more slowly on SDS-PAGE than the
lysostaphin-digested counterpart.
N-Acetylmuramyl-L-alanine amidases, S. aureus Atl (25), and B. subtilis CwlA (27) also released Seb-MH6-Cws as a spectrum of fragments with
different mass. Most amidase-released species migrated more slowly on
SDS-PAGE than then lysostaphin-cut counterpart, indicating surface
protein attachment to cross-linked peptidoglycan. These results
suggested that 11 hydrolase cut the staphylococcal cell wall not
only at the N-acetylmuramyl-L-Ala amide bond but
also at the peptidoglycan cross-bridge, thereby releasing
Seb-MH6-Cws linked to unsubstituted (non-cross-linked)
tetrapeptide. Amidase-treated samples also contained a prominent
species of Seb-MH6-Cws that migrated faster on SDS-PAGE
than the lysostaphin-solubilized counterpart. This species was
characterized to be the product of proteolytic cleavage between the
glutamine (Q) and the alanine (A) upstream of the LPXTG
motif during sample preparation (AQ/ALPETG, data not shown).
Characterization of Muramidase-solubilized Anchor Peptides--
To
analyze the structure of mutanolysin-solubilized anchor peptides, the
CnBr cut fragments were purified by affinity chromatography. The eluate
was rechromatographed by RP-HPLC to separate COOH-terminal anchor
peptides from contaminating peptides generated by incomplete CnBr
cleavage (18). Two peaks of absorption at 215 nm were observed for
these samples. The peak that eluted at 27% CH3CN was
composed of COOH-terminal anchor peptides, whereas the peak that
eluted at 33% CH3CN contained additional peptide
sequence (NH2-VDSKDVKIEVYLTTKKGTMHHHHHHAQALPET-cell wall anchor) (Fig. 2A, data
not shown). Mutanolysin-solubilized anchor peptides were analyzed by
MALDI-MS (Fig. 2B). The mass of anchor peptide linked to a
single murein pentapeptide unit, MurNAc-[L-Ala-D-iGln-L-Lys-(NH2-HHHHHHAQALPET-Gly5)-D-Ala-D-Ala-COOH]( 1-4)-GlcNAc, was calculated to be 2785.88 [M+H]+, which was in
agreement with the observation of a strong signal at m/z
2786. Nevertheless, we also expected signals for anchor peptide linked
to cell wall tetrapeptide as well as the
N,O-6-diacetylated muramoyl species of the
staphylococcal peptidoglycan (5). Close examination of the spectrum
revealed compounds with m/z 2716, 2744, 2758, 2786, 2814, 2828, and 2856. The measurement of m/z 2716 was consistent
with the mass of anchor peptide linked to cell wall tetrapeptide
(calculated mass 2714.80, MurNAc-(L-Ala-D-iGln-L-Lys-(NH2-HHHHHHAQALPET-Gly5)-D-Ala-COOH)-( 1-4)-GlcNAc), whereas the observed ions at m/z 2758 and 2828 were
explained as the N,O-6-diacetylated muramoyl
species of the compounds with m/z 2716 and 2786. Ions with
m/z 2744, 2813, and 2856 differed by an average mass of 28 from those at m/z 2716, 2786, and 2828, respectively.
Signals with mass deviation of 28 were observed routinely for
CnBr-cleaved anchor peptides and were likely due to formylation of
anchor peptides during the incubation in 70% formic acid (18).

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Fig. 2.
Characterization of mutanolysin-solubilized
anchor peptides. A, mutanolysin-solubilized
Seb-MH6-Cws was purified, precipitated with
methanol/chloroform, and cleaved with CnBr. COOH-terminal anchor
peptides were purified by affinity chromatography on nickel-Sepharose
and subjected to RP-HPLC. B, MALDI-MS analysis of the peak
eluting at 34% CH3CN revealed a spectrum of signals.
Inset, m/z 2700-2900 drawn to an expanded scale.
Ion signals marked with an asterisk were generated by
muramidase-solubilized anchor peptides that had lost some of their
amino sugar residues.
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Mutanolysin digestion of the staphylococcal cell wall released
Seb-MH6-Cws as a spectrum of fragments, indicating that
anchor peptides must be tethered to cross-linked peptidoglycan. The
mass of a murein subunit,
MurNAc-(L-Ala-D-iGln-L-Lys-(Gly5)-D-Ala)-( 1-4)-GlcNAc, was calculated to be 1162.16 Da and 1204.19 Da for the
N,O-6-diacetylated muramoyl species,
respectively. Observed ion signals at m/z 2786, 3991, 5153, and 6357 differed from one another by mass increments of 1205, 1162, and 1204 Da, suggesting that these signals were generated by anchor
peptides linked to one, two, or three murein subunits.
N,O-6-diacetylation is known to occur at
approximately half of all muramoyl residues in the staphylococcal
peptidoglycan (5, 36). Thus, anchor peptides linked to two or three
cell wall subunits carried at least one if not several diacetylated muramoyl. The predicted and observed m/z values of
COOH-terminal anchor peptides linked to one, two, three, or four murein
subunits each with varying degrees of acetylation at the muramoyl O-6
position were noted to be in agreement (Table
I), indicating that murein subunits
linked to anchor peptides were either mono- or diacetylated.
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Table I
Summary of ion signals produced during MALDI-MS of
mutanolysin-solubilized anchor peptides
MALDI-MS of mutanolysin-solubilized anchor peptides as described in the
legend to Fig. 2.
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MALDI-MS signal intensity was found to decrease with the addition of
each cell wall subunit to anchor peptide while the complexity of the
spectrum simultaneously increased (see m/z 2786, 3991, 5153, and 6357). This can be explained by several observations. First, as
detected on SDS-PAGE, less mutanolysin-released surface protein was
linked to higher numbers of peptidoglycan subunits. Second, the
addition of each subunit increased the number of possible mass
combinations 2-fold (mono- or diacetylation). Anchor peptide attached
to three cell wall subunits existed in eight different forms depending
on whether each subunit contained O-6 acetyl and whether the last
subunit existed as tetra- or pentapeptide. Third, minor ion signals
were generated by anchor peptides that had lost either GlcNAc (residue
mass 203.19) or MurNAc-GlcNAc (residue mass 478.44).
Characterization of Amidase-solubilized Anchor
Peptides--
Gst-Atl solubilized Seb-MH6-Cws was cut with
CnBr and subjected to affinity chromatography on nickel Sepharose.
Eluted compounds were chromatographed by RP-HPLC, and COOH-terminal
anchor peptides were detected in the peak that eluted at 23%
CH3CN (Fig. 3A). When analyzed by MALDI-MS, this sample generated a spectrum of signals
separated by regular mass increments (Fig. 3B). The mass of
the anchor peptide linked to a single pentapeptide unit,
NH2-L-Ala-D-iGln-L-Lys-(NH2-HHHHHHAQALPET-Gly5)-D-Ala-D-Ala-COOH, was calculated to be 2307.44 [M+H]+, which was in
agreement with the observed signal at m/z 2308. A
significantly weaker signal was detected at m/z 2235, an
observation that was consistent with the mass of anchor peptide linked
to unsubstituted tetrapeptide (calculated mass 2236.34, NH2-L-Ala-D-iGln-L-Lys-(NH2-HHHHHHAQALPET-Gly5)-D-Ala-COOH) (data not shown).

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Fig. 3.
Characterization of amidase-solubilized
anchor peptides. A, Gst-Atl amidase-solubilized
Seb-MH6-Cws was purified, precipitated with
methanol/chloroform, and cleaved with CnBr. COOH-terminal anchor
peptides were purified by affinity chromatography on nickel-Sepharose
and rechromatographed on RP-HPLC. B, MALDI-MS analysis of
anchor peptides eluted at 30% CH3CN revealed a spectrum of
different ion signals. Inset, m/z 4100-4400
drawn to an expanded scale.
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Major signals of amidase-released anchor peptides were observed at
m/z 2992, 3675, 4360, 5044, 5727, 6410, 7098, 7780, 8643, and 9149 (Fig. 3B). The difference in mass between these
signals was 684, 683, 685, 684, 683, 683, 688, 682, 683, and 686, respectively (mean 684.1). These results were in agreement with the
mass of cross-linked cell wall tetrapeptide
(NH2-L-Ala-D-iGln-L-Lys-(Gly5)-D-Ala-COOH (calculated mass 683.72)). Amidase removal of the MurNAc-GlcNAc disaccharide eliminated the degeneracy observed for
mutanolysin-solubilized anchor peptides, thereby allowing detection of
anchor peptides linked to as many as 11 murein subunits. For better
analysis of the signals surrounding major ions, the mass spectrum was
drawn to an expanded scale (inset of Fig. 3B). In
addition to the major ion at m/z 4360, signals with
m/z 4155, 4288, and 4384 Da were observed. The measurement
at m/z 4384 represented the sodium adduct of m/z
4360, whereas m/z 4288 was explained as anchor peptide with
cross-linked wall peptide lacking one D-alanyl residue. The ion at m/z 4155 correlated with the mass of anchor peptide
linked to three wall peptide subunits, where one of the subunits
contained MurNAc-GlcNAc disaccharide (calculated mass 4153.32),
suggesting that this compound might have arisen by incomplete amidase
digestion. Taken together, the MALDI-MS analysis of mutanolysin
and amidase-solubilized anchor peptides suggested that
Seb-MH6-Cws was attached to either single murein
pentapeptide and tetrapeptide subunits or to murein tetrapeptides that
were cross-linked to the remainder of the staphylococcal peptidoglycan.
Characterization of Murein Subunits Linked to Anchor
Peptides--
If the multiple ion signals observed for the
mutanolysin-solubilized anchor peptides were due to cross-linked
peptidoglycan, lysostaphin cleavage of the pentaglycyl cross-bridge
would be expected to generate murein subunits without linked anchor
peptide. This was tested, and mutanolysin-released anchor peptides were first reduced by sodium borohydride treatment, desalted, and dissolved in Tris-HCl buffer for lysostaphin treatment. Lysostaphin was removed
from the digested sample by precipitation with 10% (v/v) trifluoroacetic acid, and the trifluoroacetic acid-soluble muropeptides were chromatographed by RP-HPLC using a gradient of phosphate-buffered methanol. Three major peaks of absorption at 215 nm (labeled A, B, and
C) as well as several minor peaks were identified (Fig. 4). Fractions corresponding to peaks A,
B, and C were desalted and analyzed by ESI-MS. Peak A generated a
predominant ion at m/z 1068.7 as well as a less abundant ion
at m/z 1125.7. These measurements were in agreement
with the predicted mass of a singly charged reduced muropeptide
(MurNAc-(L-Ala-D-iGln-L-Lys-(Glyx)-D-Ala-Glyx-COOH)-( 1-4)-GlcNAc) with either three or four linked glycyl residues (calculated masses of
1068.5 and 1125.5, respectively). ESI-MS analysis of peak B revealed a
strong signal at m/z 1110.4 and a lesser ion at
m/z 1167.4. These measurements differed from those observed
in peak A by +41.9 daltons, indicating that peak B contained the
N,O-6-diacetylated counterparts of the compounds identified
in peak A. Peak C contained ions at m/z 862.3 and 575.2, consistent with the calculated mass of the doubly and triply charged
ions of lysostaphin-released anchor peptide
(NH2-HHHHHHAQALPETGGG-COOH, 1722.81 Da).

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Fig. 4.
RP-HPLC analysis of murein linked to
mutanolysin-released anchor peptide. A,
mutanolysin-solubilized anchor peptides were reduced with sodium
borohydride and digested with lysostaphin. Lysostaphin was precipitated
with trifluoroacetic acid, and trifluoroacetic acid-soluble
muropeptides were separated by RP-HPLC. Absorbance was monitored at 206 nm, and fractions corresponding to major absorbance peaks (A, B, and C)
were analyzed by ESI-MS (see text).
|
|
To confirm the proposed structure of the murein subunit obtained by
lysostaphin treatment of mutanolysin-released anchor peptides (peak A),
the ion at m/z 1068.7 was subjected to CID in an MS/MS experiment. Analysis of the daughter ions generated by CID from the
singly charged parent ion suggested the structure
MurNAc-[L-Ala-D-iGln-L-Lys-(NH2-Gly-Gly)-D-Ala-Gly-COOH]( 1-4)-GlcNAc (see Fig. 5 and Table
II). Two other possible structures would generate an identical mass while harboring one or three glycyl attached
to the -amino of lysyl:
MurNAc-[L-Ala-D-iGln-L-Lys-(NH2-Gly)-D-Ala-Gly-Gly-COOH]( 1-4)-GlcNAc or
MurNAc-[L-Ala-D-iGln-L-Lys-(NH2-Gly-Gly-Gly)-D-Ala-COOH]( 1-4)-GlcNAc. However, the observed daughter ions at m/z 442, presumed
structure NH2-L-Ala-D-iGln-L-Lys-(NH2-Gly-Gly)-COOH,
and m/z 750, presumed structure
MurNAc-L-Ala-D-iGln-L-Lys-D-Ala-Gly-COOH,
suggested that two of three glycyls were linked to the -amino of
lysyl. This interpretation was in agreement with previous data
regarding the preferred cleavage sites of the pentaglycyl cross-bridge
by lysostaphin (37, 38). Taken together, the data revealed that mutanolysin-solubilized anchor peptides were attached mostly to cross-linked staphylococcal peptidoglycan.

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Fig. 5.
MS/MS of the singly charged muropeptide
ion at m/z 1068.7. A, the major compound
contained within RP-HPLC peak A (Fig. 4) generated a singly charged ion
at m/z 1068.7, which was subjected to CID in an MS/MS
experiment. Fragment ion signals were compared with the structural
model. B, proposed structure of the lysostaphin-solubilized
compound at m/z 1068.7 based on the results of the MS/MS
experiment:
MurNAc-[L-Ala-D-iGln-L-Lys-(Gly2)-D-Ala-Gly-COOH]-( 1-4)-GlcNAc.
See Table II for a complete listing of the observed daughter ions
and their putative structural assignments.
|
|
 |
DISCUSSION |
We propose that surface proteins of S. aureus are
linked to the cell wall via an amide bond between the carboxyl of
threonine within the LPXTG motif and the amino of the
pentaglycyl cross-bridge. Our hypothesis is based on the observation
that surface proteins need enzymatic digestion of the bacterial cell
wall to acquire solubility (39, 40). Digestion with muralytic enzymes
cuts the peptidoglycan at specific sites and releases surface proteins linked to corresponding subunits of the staphylococcal cell wall. Lysostaphin cuts the glycyl-glycine bond of the pentaglycyl
cross-bridge (41, 42) and solubilizes surface protein linked to either two or three glycine residues (17). Mutanolysin
(N-acetylmuramidase) and Gst-Atl
(N-acetylmuramyl-L-alanine amidase) release
surface protein attached to a spectrum of peptidoglycan fragments
composed of either cross-linked
MurNAc-(L-Ala-D-iGln-L-Lys-(Gly5)-D-Ala)-( 1-4)-GlcNAc or
NH2-L-Ala-D-iGln-L-Lys-(Gly5)-D-Ala,
respectively. Finally, 11 hydrolase solubilizes surface protein as
two distinct species linked to unsubstituted
L-Ala-D-iGln-L-Lys-(Gly5)d-Ala-COOH
or MurNAc-(L-Ala-D-iGln-L-Lys-(Gly5)-D-Ala-COOH)-( 1-4)-GlcNAc
(18).
In our previous report, on the anchor structure of surface proteins of
S. aureus we assumed that the 11 enzyme displayed only
amidase activity (19) and proposed that surface protein may be linked
to free, unsubstituted cell wall subunits (18). In another report, we
now show that the 11 enzyme has two activities that cut the cell
wall at the N-acetylmuramyl-L-alanine and the D-alanyl-glycine bonds.2 We correct our model
and propose that surface proteins are anchored to cross-linked
peptidoglycan as well as cell wall pentapeptide. Fig.
6 is a diagram of anchor peptide attached
to a peptidoglycan dimer with the terminal subunit shown as acetylated
murein-pentapeptide. The calculated mass of this structure is 3989.06 Da, similar to a measurement obtained by MALDI-MS of
mutanolysin-solubilized anchor peptides (Table I). Fig. 6 shows the
muramoyl of the cell wall anchor structures to be diacetylated;
however, our data suggest that O-6-acetylation can occur at
either, both, or neither of these subunits.

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Fig. 6.
Model for the structure of anchor peptide
linked to a peptidoglycan dimer. Proposed structure of a surface
protein (Seb-MH6-Cws) anchor peptide linked to a
peptidoglycan dimer (calculated mass, 3989.06). An ion corresponding to
this structure was identified by MALDI-MS analysis of
mutanolysin-solubilized anchor peptides (Fig. 2). The
N-acetylmuramoyl of the terminal peptidoglycan subunit is
shown to be O-6-acetylated, although evidence suggests that such
acetylation occurs at either N-acetylmuramoyl within the
structure. Amino acid residues from the COOH terminus of
Seb-MH6-Cws are shown in bold letters, except
for threonine for which the chemical structure is shown.
|
|
Although it appears that surface proteins are linked to murein
subunits, the mechanism by which these polypeptides are incorporated into the peptidoglycan is still unclear. Future work will attempt to
resolve whether surface proteins are attached to previously assembled
peptidoglycan or linked to a precursor (43, 44), for example lipid II,
which is subsequently incorporated into the cell wall via
transglycosylation and transpeptidation reactions (15). It is also
conceivable that cell wall sorting occurs at sites of peptidoglycan
assembly, assuming an abundance of free pentaglycyl cross-bridges at
such locations. Isolation of sortase, the enzyme that catalyzes the
anchoring of surface proteins, would permit the identification of such
sites.
The cell wall sorting reaction has been proposed to be universal for
Gram-positive bacteria (2). Evidence for this has recently accumulated,
and cell wall sorting signals have been investigated in
Listeria, streptococci, as well as other staphylococcal species (45-47). Both amidase-solubilized streptococcal M protein (48)
and muramidase-solubilized internalin of Listeria (45) appear to migrate as species with cross-linked peptidoglycan on SDS-PAGE. Nevertheless, the universality of the sorting reaction in
other Gram-positive bacteria requires more rigorous proof such as the
purification and characterization of cell wall anchor structures from
the peptidoglycan of these bacterial species.
 |
ACKNOWLEDGEMENTS |
We thank members of our laboratory for
critical review of this manuscript. We are also indebted to the
referees of a previous publication for comments that helped us
understand staphylococcal cell wall structure.
 |
FOOTNOTES |
*
This work was supported by United States Public Health
Service Grants AI 33985 and AI 38897.The costs of publication of this article were defrayed in part by the
payment of page charges. The article
must therefore be hereby marked
"advertisement" in accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
§
Supported by a UCLA Cellular and Molecular Biology training
grant.
Supported by a grant from the Keck Foundation.
**
To whom reprint requests should be addressed: Dept. of Microbiology
and Immunology, UCLA School of Medicine, 10833 Le Conte Ave., Los
Angeles, CA 90095. Tel.: 310-206-0997; Fax: 310-267-0173; E-mail:
olafs{at}ucla.edu.
The abbreviations used are:
MurNAc, N-acetylmuramic acid; CH3CN, acetonitrile; CID, collisionally induced dissociation; Cws, cell wall sorting signal; ESI-MS, electrospray ionization mass spectrometry; MALDI-MS, matrix-assisted laser desorption ionization mass spectrometry; MS/MS, tandem mass spectrometry; PAGE, polyacrylamide gel electrophoresis; PMSF, phenylmethylsulfonyl fluoride; PPG, polypropylene glycol; RP-HPLC, reversed phase high performance liquid chromatography; Seb, staphylococcal enterotoxin B.
2
W. W. Navarre, H. Ton-That, K. F. Faull, and O. Schneewind, manuscript in preparation.
 |
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R. Janulczyk and M. Rasmussen
Improved Pattern for Genome-Based Screening Identifies Novel Cell Wall-Attached Proteins in Gram-Positive Bacteria
Infect. Immun.,
June 1, 2001;
69(6):
4019 - 4026.
[Abstract]
[Full Text]
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H. Ton-That, S. K. Mazmanian, K. F. Faull, and O. Schneewind
Anchoring of Surface Proteins to the Cell Wall of Staphylococcus aureus. SORTASE CATALYZED IN VITRO TRANSPEPTIDATION REACTION USING LPXTG PEPTIDE AND NH2-GLY3 SUBSTRATES
J. Biol. Chem.,
March 24, 2000;
275(13):
9876 - 9881.
[Abstract]
[Full Text]
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H. Ton-That, G. Liu, S. K. Mazmanian, K. F. Faull, and O. Schneewind
Purification and characterization of sortase, the transpeptidase that cleaves surface proteins of Staphylococcus aureus at the LPXTG motif
PNAS,
October 26, 1999;
96(22):
12424 - 12429.
[Abstract]
[Full Text]
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H. Ton-That and O. Schneewind
Anchor Structure of Staphylococcal Surface Proteins. IV. INHIBITORS OF THE CELL WALL SORTING REACTION
J. Biol. Chem.,
August 20, 1999;
274(34):
24316 - 24320.
[Abstract]
[Full Text]
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W. W. Navarre, H. Ton-That, K. F. Faull, and O. Schneewind
Multiple Enzymatic Activities of the Murein Hydrolase from Staphylococcal Phage phi 11. IDENTIFICATION OF A D-ALANYL-GLYCINE ENDOPEPTIDASE ACTIVITY
J. Biol. Chem.,
May 28, 1999;
274(22):
15847 - 15856.
[Abstract]
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W. W. Navarre and O. Schneewind
Surface Proteins of Gram-Positive Bacteria and Mechanisms of Their Targeting to the Cell Wall Envelope
Microbiol. Mol. Biol. Rev.,
March 1, 1999;
63(1):
174 - 229.
[Abstract]
[Full Text]
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H. Ton-That, S. K. Mazmanian, L. Alksne, and O. Schneewind
Anchoring of Surface Proteins to the Cell Wall of Staphylococcus aureus. CYSTEINE 184 AND HISTIDINE 120 OF SORTASE FORM A THIOLATE-IMIDAZOLIUM ION PAIR FOR CATALYSIS
J. Biol. Chem.,
February 22, 2002;
277(9):
7447 - 7452.
[Abstract]
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S. K. Mazmanian, H. Ton-That, K. Su, and O. Schneewind
An iron-regulated sortase anchors a class of surface protein during Staphylococcus aureus pathogenesis
PNAS,
February 19, 2002;
99(4):
2293 - 2298.
[Abstract]
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S. K. Mazmanian, G. Liu, E. R. Jensen, E. Lenoy, and O. Schneewind
From the Cover: Staphylococcus aureus sortase mutants defective in the display of surface proteins and in the pathogenesis of animal infections
PNAS,
May 9, 2000;
97(10):
5510 - 5515.
[Abstract]
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Copyright © 1998 by the American Society for Biochemistry and Molecular Biology.
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