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J Biol Chem, Vol. 273, Issue 49, 32864-32869, December 4, 1998
Signal Decay through a Reverse Phosphorelay in the Arc
Two-component Signal Transduction System*
Dimitris
Georgellis ,
Ohsuk
Kwon,
Peter
De Wulf, and
E.
C. C.
Lin§
From the Department of Microbiology and Molecular Genetics, Harvard
Medical School, Boston, Massachusetts 02115
 |
ABSTRACT |
Escherichia coli senses and signals
anoxic or low redox conditions in its growth environment by the Arc
two-component system. Under those conditions, the tripartite sensor
kinase ArcB undergoes autophosphorylation at the expense of ATP and
subsequently transphosphorylates its cognate response regulator ArcA
through a His Asp His Asp phosphorelay pathway. In this
study we used various combinations of wild-type and mutant ArcB domains
to analyze in vitro the pathway for signal decay. The
results indicate that ArcA-P dephosphorylation does not occur by direct
hydrolysis but by transfer of the phosphoryl group to the secondary
transmitter and subsequently to the receiver domain of ArcB. This
reverse phosphorelay involves both the conserved His-717 of the
secondary transmitter domain and the conserved Asp-576 of the receiver
domain of ArcB but not the conserved His-292 of its primary transmitter
domain. This novel pathway for signal decay may generally apply to
signal transduction systems with tripartite sensor kinases.
 |
INTRODUCTION |
Signal transduction by phosphorylation and dephosphorylation of
cellular proteins plays pivotal roles in regulating numerous cellular
processes in both prokaryotes and eukaryotes. In prokaryotes, signaling
by phosphoryl group transfer reactions depends on two-component systems
typically comprising a sensor kinase and its cognate response regulator
(1). Upon stimulation, the sensor kinase undergoes ATP-dependent autophosphorylation at a conserved histidine.
The kinase then activates its cognate response regulator by
transphosphorylating it at a conserved aspartate. Often, the kinase
exhibits a third activity that promotes the release of Pi
from the phospho-response regulator. Such two-component systems have
also been found in archaebacteria (2, 3), fungi (4-6), and the plant
Arabidopsis thaliana (7-9).
The Arc (anoxic redox control,
formerly aerobic respiration control) two-component system of
Escherichia coli consists of ArcB as the membrane-bound
sensor kinase and ArcA as its response regulator (Fig.
1). This system regulates the expression
of some 30 operons (the Arc modulon) in response to redox conditions of growth (10, 11). The ArcB protein (12, 13) belongs to a subfamily of
tripartite hybrid kinases (14); in addition to the canonical pair of
transmembrane segments and the orthodox transmitter domain (H1), there
is a central receiver domain (D1) and a secondary C-terminal
transmitter domain (H2) (15, 16). This subfamily accounts for about
20% of the currently reported sensor kinases in E. coli
(17). Other examples of bacterial tripartite kinases include BarA (18),
BvgS (19), EvgS (20), LemA (21), RteA (22), and TorS (23).

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Fig. 1.
Schematic representations of protein domains
of the Arc two-component system. Top, the ArcB sensor
kinase protein. Two N-terminal transmembrane segments (TM)
were predicted on the basis of a hydrophobicity plot (61) and supported
by ArcB-PhoA fusion analyses (O. Kwon and D. Georgellis, unpublished
data.) (62). Residues 73-115 contain a putative leucine zipper motif
(63). H1 (the orthodox transmitter domain) is shown with the
conserved His-292 (12) and the catalytic determinants N,
G1, and G2. The last two determinants resemble
nucleotide-binding motifs (64). D1 (the receiver domain) is
shown with the conserved Asp-576 (12), and H2 (the secondary
transmitter domain) is shown with the conserved His-717 (15). The
hatched bars indicate the lengths of the individual H1, D1,
and H2 modules used in the study. Not illustrated are H1-D1 comprising
residues 78-661, and D1-H2 comprising residues 521-778.
Bottom, the ArcA response regulator protein. The N-terminal
receiver domain contains the conserved Asp-54, and the C-terminal
domain contains the helix-turn-helix (HTH) motif (65). The
hatched bar indicates the length of ArcA'.
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Results from a previous in vitro study on the Arc system
indicated that, following ArcB autophosphorylation at the conserved His-292 of H1, the phosphoryl group is successively transferred to the
conserved Asp-576 of D1, the conserved His-717 of H2, and the conserved
Asp-54 of ArcA in a His Asp His Asp phosphorelay (24). This
sequence of signal transmission was previously reported for the Kin/Spo
system of Bacillus subtilis (25), the Sln1p/Ypd1p/Ssk1p of
Saccharomyces cerevisiae (26), the BvgS/A of
Bordetella pertussis (27, 28), and the TorS/R of E. coli (29).
So far most studies on these signal transduction pathways have focused
on the ATP-dependent autophosphorylation of the sensor kinase and the subsequent phosphotransfer reaction(s) to the response regulator. Considerably less is known about the pathways for signal decay that are equally important in adaptive responses. Here we report
experiments designed to analyze the route of ArcA-P dephosphorylation. The results led us to propose a novel pathway for signal decay.
 |
EXPERIMENTAL PROCEDURES |
Bacterial Strains, Plasmids, and
Oligonucleotides--
E. coli M15 and plasmids pREP4 and
pQE30 were obtained from Qiagen Ltd. Plasmids
pQE30ArcB78-778, pQE30ArcB78-661,
pQE30ArcB78-520, pQE30ArcB521-778,
pQE30ArcB521-661, pQE30ArcB638-778, and
pQE30ArcA, used for expression of His-tagged derivatives of ArcB and
ArcA, have been described previously (24, 30). To create pQE30ArcA', a
440-base pair region of DNA containing the coding sequence
corresponding to amino acid residues 1-136 of ArcA was amplified by
the PCR1 using primers
5'-CCCGGATCCCATATGCAGACCCCGCACATTCTTATC-3' and 5'-CCCGGATCCTGCAGTCATTAGCTTTCAACGCTACGACGTTCTTC-3' with pMW2 (10) as
template. The PCR product was digested with BamHI and
PstI, and the resulting fragment was cloned between the
BamHI and PstI sites of pQE30.
To create pQE30ArcB521-778, D576A, primers
5'-CCCGGATCCCATATGCCTTTACCGGCGCTGAATGTGC-3' and
5'-CCCGGATCCATGCATCGCGCACCCCGGTCTAGCC-3' were used in the PCR with
pBB35 (12) as template. The PCR product was digested with
BamHI and NsiI and cloned between the
BamHI and PstI sites of pQE30.
To create pQE30ArcB521-778, H717Q the mutagenic primer
5'-GGCATTGTTGAGGAAGGACAGAAAATTAAAGGTGCGGCG-3' and primer
5'-CCCGGATCCATGCATCGCGCACCCCGGTCTAGCC-3' were used in the PCR with
pBB25 (12) as template. The product of this reaction was purified and
used as a megaprimer for PCR in combination with primer
5'-CCCGGATCCCATATGCCTTTACCGGCGCTGAATGTGC-3' and pBB25 as template.
Finally, the product of the second PCR reaction was digested with
BamHI and NsiI and cloned between the BamHI and PstI sites of pQE30.
All DNA fragments cloned from PCR-amplified material were verified by
sequencing at Micro Core Facility of the Department of Microbiology and
Molecular Genetics, Harvard Medical School.
Purification of His6-tagged Proteins, Isolation of
His6-ArcA1-136-P, and Dephosphorylation
Assays--
Expression and purification of the His6-tagged
proteins were described previously (24). Phosphorylation of
His6-ArcA1-136 (~0.4 nmol) was carried out
at 25 °C in 20 µl of buffer A (33 mM HEPES at pH 7.5, 50 mM KCl, 5 mM MgCl2, 1 mM dithiothreitol, 0.1 mM EDTA, and 10%
glycerol) containing His6-ArcB78-778 (~50
pmol) and 40 µM [ -32P]ATP (specific
activity 2 Ci/mmol, NEN Life Science Products). After 10 min, the
reaction was terminated by addition of 100 µl of buffer B (50 mM Tris-HCl at pH 7.0, 150 mM KCl, 5 mM EDTA, and 3% Triton X-100).
His6-ArcB78-778 was separated from the
reaction mixture by ultrafiltration, using a Nanosep 30K device
(Pallfiltron). The filtrate, containing
His6-ArcA1-136-P was passed through a Nanosep
10K device, and the retained material was washed 4 times with 500 µl
of buffer B and once with 500 µl of buffer A to remove small
molecules such as ATP and Pi. Finally, the retained
material containing His6-ArcA1-136-P
(essentially free of His6-ArcB78-778,
nonhydrolyzed ATP and Pi) was diluted to a final volume of
200 µl with buffer A. Dephosphorylation reactions were carried out at
25 °C in mixtures of 35 µl of buffer A, containing ~50 pmol of
His6-ArcA1-136-P and ~5 pmol of
ArcB78-778 or its subdomain(s). At various time points, a
5-µl sample was withdrawn, mixed with 5 µl of SDS sample buffer,
and kept on ice. One µl of each sample was analyzed for
Pi by TLC in 2 N formic acid and 0.5 M LiCl for 45 min, using polyethyleneimine cellulose plates
(Aldrich). The rest of the sample (9 µl) was analyzed for the
proteins by SDS-PAGE on 15% polyacrylamide gels. The radioactivity of
proteins or Pi resolved on SDS gels or TLC plates was
determined qualitatively by autoradiography with X-Omat AR (Kodak) and
quantitatively by a PhosphorImager (Molecular Dynamics).
 |
RESULTS |
Effect of ArcB on the Dephosphorylation of ArcA-P--
To test
whether ArcB catalyzes the dephosphorylation of ArcA-P, we carried out
an exploratory experiment in which
His6-ArcB78-778 (hereafter referred to as
H1-D1-H2) and His6-ArcA (hereafter referred to as ArcA)
were incubated with [ -32P]ATP.
An N-terminally truncated ArcB was used because the removal of the two
transmembrane segments facilitated the purification of the protein
which is constitutively active as an autokinase (24, 31). After 10 min
of incubation, the reaction mixture was divided into 2 aliquots as
follows: one served as the control and the other was fortified with
additional H1-D1-H2 (Fig. 2). In the
control reaction, the amount of ArcA-P continued to increase until it
reached a steady state. By contrast, in the reaction mixture
supplemented with H1-D1-H2, the amount of ArcA-P decreased rapidly.
Furthermore, the level of phosphorylated H1-D1-H2 in the second
reaction mixture increased transiently. This increase may reflect
either the autophosphorylation of the added protein or its
transphosphorylation by ArcA-P. The radioactivity lost from ArcA
greatly exceeded that acquired by H1-D1-H2. The difference is
essentially accounted for by the Pi liberated (not shown). The results suggest that ArcB catalyzes both the phosphorylation of
ArcA and the dephosphorylation of ArcA-P.

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Fig. 2.
Acceleration of ArcA-P dephosphorylation by
ArcB. ArcA (100 pmol) and H1-D1-H2 (10 pmol) were incubated with
[ -32P]ATP (50 µmol) in a total reaction volume of
100 µl. After 10 min, the reaction mixture was divided into two equal
portions (indicated by arrows): one served as control, and
the other received 25 pmol of H1-D1-H2 (0.5 µl). At the indicated
time intervals, 5 µl of the reaction mixtures were withdrawn for
analysis of ArcA-P (top panel) and H1-D1-H2-P (bottom
panel). Closed diamonds, ArcA-P in the control
reaction; open diamonds, ArcA-P in the reaction fortified
with H1-D1-H2; closed circles, H1-D1-H2-P in the control
reaction mixture; open circles, H1-D1-H2-P in the reaction
mixture fortified with H1-D1-H2.
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Efforts to isolate ArcA-P for direct assays of its dephosphorylation
were unsuccessful due to its tendency to aggregate during the
purification process. Since a previous study showed that the response
regulator NtrC, possessing only its N-terminal receiver domain,
retained the activity as a substrate of the cognate sensor kinase (32),
we used a similar approach to bypass our problem. His6-ArcA1-136 (hereafter referred to as
ArcA'), containing the receiver domain but lacking the HTH (DNA
binding) domain, was prepared. The purified ArcA' was indeed found to
be an effective substrate for phosphorylation when incubated with
H1-D1-H2 in the presence of [ -32P]ATP. The product,
ArcA'-P, was separated from H1-D1-H2, ATP, and Pi and used
as substrate for testing the phosphatase activity of ArcB or its
subdomains. We used H1-D1-H2 and its modular derivatives to test the
ArcA-P dephosphorylating activities, since in a previous study on
signal transmission, these polypeptides were found to be
catalytically active (24).
Spontaneous and Catalytic Dephosphorylation of
ArcA'-P--
ArcA'-P was first tested for the intrinsic stability of
its phospho-aspartyl bond. When incubated in buffer A (pH 7.5) at 25 °C, the half-life of the phospho-protein was found to exceed 1 h (Fig. 3A). Incubation
of ArcA'-P with purified H1-D1-H2 resulted in a rapid release of
Pi with concomitant loss of radiolabel from ArcA'-P. During
the course of this reaction, there was a slight transient rise of
labeled H1-D1-H2 followed by a gradual decay, suggesting that the
phosphoryl group was transferred from ArcA'-P to H1-D1-H2 and
subsequently to H2O (Fig. 3B).

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Fig. 3.
ArcA'-P dephosphorylating activity of ArcB
and its subdomains. Purified ArcA'-P (50 pmol) was incubated with
different ArcB domains (5 pmol) in a 35-µl reaction mixture. At the
indicated time points, a 5-µl sample was withdrawn for SDS-PAGE and
TLC analysis (see "Materials and Methods"). Polypeptides present in
the reaction are indicated below each autoradiogram. The
position of each polypeptide in the gel is indicated on the right
side of each panel. A, ArcA'-P alone; B,
ArcA'-P with H1-D1-H2; C, ArcA'-P with D1-H2; D,
ArcA'-P with H1-D1; E, ArcA'-P with H1; F,
ArcA'-P with D1; and G, ArcA'-P with H2. When useful, the
normalized rates of phosphoryl group transfer and Pi
release are presented graphically below the autoradiogram.
Filled squares, ArcA'-P; open circles,
Pi; and open diamonds, H1-D1-H2-P in the case of
reaction B or D1-H2-P in the case of reaction C.
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Attempts were then made to locate the dephosphorylating activity in
H1-D1-H2 by the use of its various modular derivatives. The possibility
of the phosphatase activity residing in H1
(His6-ArcB78-521) was first tested by
incubating this domain with ArcA'-P. No dephosphorylating activity was
detected (Fig. 3E). H1-D1
(His6-ArcB78-661) also had no effect on the
stability of ArcA'-P (Fig. 3D). Moreover, neither H1 nor
H1-D1 acquired the phosphoryl group from ArcA'-P at a detectable level.
By contrast, D1-H2 (His6-ArcB521-778)
catalyzed the hydrolysis of ArcA'-P at a rate similar to that by
H1-D1-H2 and became transiently labeled itself (Fig. 3C).
When D1 (His6-ArcB521-661) or H2
(His6-ArcB638-778) was tested separately, no
ArcA'-P dephosphorylating activity was observed (Fig. 3, F
and G). A mixture of the two proteins, however, did (Fig.
4A). The rate was equivalent
to that catalyzed by the covalently linked D1-H2 (compare with Fig.
3C). Thus D1 and H2 each provides an essential
catalytic function for the ArcA'-P dephosphorylation process. Because
of the similarity in molecular weights of D1, H2, and ArcA', this
experiment could not reveal whether or not D1 or H2 acquired the
phosphoryl group from ArcA'-P.

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Fig. 4.
The roles of Asp-576 and His-717 of ArcB in
ArcA'-P dephosphorylation. Purified ArcA'-P (50 pmol) was
incubated with D1 and H2 or the mutant peptides in a 35-µl reaction
mixture. At the indicated time points, a 5-µl sample was withdrawn
for SDS-PAGE and TLC analysis and subsequent quantitation by the
PhosphorImager (see "Materials and Methods"). A, ArcA'-P
incubated with D1 and H2; B, ArcA'-P incubated with
D1D576A and H2; C, ArcA'-P incubated with D1 and
H2H717Q. Top, autoradiogram of the protein band
in the gel. Bottom, the rate of ArcA'-P dephosphorylation
graphically presented as relative amount of labeled protein or
Pi versus time. Filled squares,
ArcA'-P; open circles, Pi.
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Dephosphorylation of ArcA'-P by a Reverse Phosphorelay--
To
probe whether both His-717 of H2 and Asp-576 of D1 are critical in the
concerted process of ArcA'-P dephosphorylation, a mixture of
D1D576A and H2 or a mixture of D1 and H2H717Q
was tested. Neither exhibited any significant phosphatase activity (Fig. 4, B and C). To answer the question
of whether the order of phospho-transfer was from ArcA'-P to H2 and
then to D1, mutant D1-H2 proteins were used, since they could be
separated from ArcA'-P. When ArcA'-P was incubated with
D1D576A-H2, the phosphoryl group was transferred to the
mutant protein, and the radiolabel lost from ArcA'-P was accounted for
by the radiolabel gained by D1D576A-H2. By contrast, when
ArcA'-P was incubated with D1-H2H717Q, the mutant protein
did not receive any phosphoryl group. As expected, neither mutant
protein catalyzed the release of Pi (Fig. 5). It thus appears that ArcA'-P
dephosphorylation proceeds in the reverse direction of the His Asp
His Asp phosphorelay (24), except that H1 is dispensable.

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Fig. 5.
Effects of D1D576A-H2 and
D1-H2H717Q on the ArcA'-P dephosphorylation. Purified
ArcA'-P (50 pmol) was incubated with D1D576A-H2 or
D1-H2H717Q (5 pmol) in a 35-µl reaction mixture. At the
indicated time points, a 5-µl sample was withdrawn for SDS-PAGE and
TLC analysis and subsequent quantitation by the PhosphorImager (see
"Materials and Methods"). A, ArcA'-P incubated with
D1D576A-H2; B, ArcA'-P incubated with
D1-H2H717Q. Top panel shows the autoradiogram of
the protein bands. Bottom panel shows the rate of ArcA'-P
dephosphorylation graphically presented as relative amount of labeled
protein versus time. Filled squares, ArcA'-P;
open diamonds, D1D576A-H2-P or
D1-H2H717Q-P.
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Possible Effectors in the Signal Decay Pathway--
It has been
reported that ATP or its nonhydrolyzable analogs accelerate the
dephosphorylation of the response regulators by their orthodox cognate
sensors, namely NtrB (32, 33), EnvZ (34, 35), and DegS (36). We
therefore tested the effects of ATP, ADP, AMP-PMP, ATP S, and GTP on
the dephosphorylation of ArcA'-P by H1-D1-H2. No significant effect was
observed (data not shown). In a previous study on
ArcB128-778, physiological concentrations (mM
range) of D-lactate, acetate, or pyruvate were found to
accelerate the rate of autophosphorylation, heighten the peak
phosphorylation level, and slightly retard the rate of Pi
loss from the kinase protein. Because the intracellular levels of these
compounds were known to be elevated during anoxia, it was suggested
that they serve as input signals by retarding the autophosphatase
activity of ArcB (37). When we tested the influence of those
metabolites on the ArcA'-P dephosphorylating activity of H1-D1-H2 and
D1-H2, none of them showed any significant effect on either the rate of
ArcA'-P decay or Pi release (data not shown). Preliminary
experiments indicated that these effectors act on the kinase
phosphorelay
pathway.2
 |
DISCUSSION |
Several modes for signal decay seem to have evolved for the
two-component systems. The rate of dephosphorylation of a response regulator appears to be controlled by the inherent lability of the
mixed anhydride phospho-aspartyl bond and/or a phosphatase-like activity embodied in the cognate sensor kinase or another protein. The
rate of spontaneous hydrolysis may be intrinsically set by the protein
structure, since the half-life of the phospho-response regulators vary
from seconds to hours (Ref. 38 and references therein).
Examples of catalyzed dephosphorylation of phospho-response regulators
include those that are sensor kinase-dependent, such as the
EnvZ/OmpR (35, 39), NarX/NarL (40, 41), and CpxA/R (42) systems of
E. coli; the DegS/U system of B. subtilis (36, 43); the VanS/R system of Enterococcus faecium (44), and the FixL/J system of Rhizobium meliloti (45). Mutational
analyses have shown that the conserved histidine of the sensor kinases EnvZ (46, 47), CpxA (42), and VanS (38) is not essential for the
dephosphorylating activity.
Another class of phospho-response regulator dephosphorylations involve
a third protein. Examples include the Ntr and Che systems of E. coli and the Kin/Spo phosphorelay system of B. subtilis. The dephosphorylation of NtrC-P by NtrB is controlled by
the protein PII (33, 48), whereas the dephosphorylation of
CheY-P is accelerated by CheZ (49-51). In the Kin/Spo system (52), the
dephosphorylation of SpoOA-P (the terminal receiver domain) is
catalyzed by SpoOE (53), and the dephosphorylation of SpoOF-P (the
intermediate receiver domain) is catalyzed by a family of Rap (response
regulator aspartate phosphatases)
proteins (54-56). From the mechanistic point of view, the
dephosphorylation by sensor kinases or other proteins may involve
either their direct participation in the hydrolytic reaction or their
allosteric binding to the cognate phospho-response regulator, resulting
in destabilization of the phosphoryl bond (50, 57). Future studies will
be required to resolve this issue.
Yet another mode of signal decay emerged from our in vitro
study on ArcA-P dephosphorylation by the ArcB tripartite kinase: Pi release through a reverse phosphorelay (Fig.
6). The relatively long half-life of
ArcA-P (>1 h) seems to render its spontaneous hydrolysis as an
insignificant factor in signal decay. Instead, before the phosphoryl
group is hydrolyzed, it needs to be transferred from ArcA-P to H2 at
the conserved His-717 and subsequently to the conserved Asp-576 of D1.
This conclusion is supported by in vivo studies involving
plasmid-borne wild-type or mutant ArcB domains.3 However, the
possibility of additional dephosphorylation pathways catalyzed by
unknown proteins cannot be excluded.

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Fig. 6.
A model for signal transduction by the Arc
system with special focus on the reactions leading to the
phosphorylation and dephosphorylation of the response regulator,
ArcA. Arrows indicate the directions of phosphoryl
group transfer with the thickness of the arrows indicating
the relative activities of these reactions observed under in
vitro conditions.
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It is noteworthy that H1, the classical transmitter domain, plays no
apparent role in the dephosphorylation process of ArcA-P. Despite the
previous observation that H1 transphosphorylated ArcA at a relatively
low rate (24), it is unable to accept a detectable amount of the
phosphoryl group from ArcA-P, possibly because of an unfavorable
equilibrium constant. It was originally suggested that the primary
transmitter of ArcB serves as the direct phosphoryl group donor for
ArcA (12) and that the secondary transmitter is involved in cross-talk
with a hypothetical response regulator(s) (13, 15). However, subsequent
studies showed that in vitro H2 is more effective than H1 in
transphosphorylating ArcA (24) and that in vivo both may
serve as phosphoryl group donors, depending on the regulatory inputs
(58). A recent study of BvgA/S and EvgA/S demonstrated that the
specificity of the phosphorelay is mediated by the secondary, rather
than the primary, transmitter domain (28). Recently, a sixA
(signal inhibitory factor-X) gene was discovered to encode a phosphatase that is active on the His-717-P of ArcBH292L, D576Q but not on the His-273-P of an
N-terminally truncated version of EnvZ (59). A specific physiological
role of SixA on the Arc signal transduction system, however, remains to
be shown.
In the BvgS/A system, the phosphorylated receiver domain of BvgS has
been shown to reversibly transphosphorylate the secondary transmitter
or to undergo spontaneous hydrolysis (60). Although not demonstrated,
the dephosphorylation of BvgA-P is likely to occur through a reverse
phosphorelay (Asp His Asp), as in the case of ArcA-P. Indeed,
such a multi-step dephosphorylation pathway may apply to all
two-component systems comprising a tripartite sensor kinase.
An advantage of a multi-step phosphorelay network may be the
availability of different rate control points for signaling, as
illustrated by the Kin/Spo system (52-56). In the Arc system, it has
been suggested that the ArcB autophosphatase activity is regulated at
the receiver domain by several fermentative metabolites, such as
D-lactate (37). The present study with modular ArcB units,
however, failed to confirm any inhibiting effect of
D-lactate on the various steps of ArcA-P dephosphorylation.
In any event, the receiver domain seems to play a pivotal role in
directing the phosphoryl group reversibly to His-717 or irreversibly to H2O. A challenge therefore remains to pinpoint the action
of the effectors and to determine whether there are additional elements that influence signal transmission and signal decay.
 |
FOOTNOTES |
*
This work was supported in part by U. S. Public Health
Service Grants GM40993 and GM30693 from the NIGMS of the National
Institutes of Health.The costs of publication of this
article were defrayed in part by the
payment of page charges. The article
must therefore be hereby marked
"advertisement" in
accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
Supported by Fellowship B-PD 11474-301 from the Swedish Natural
Science Research Council.
§
To whom correspondence should be addressed: Dept. of Microbiology
and Molecular Genetics, Harvard Medical School, 200 Longwood Ave.,
Boston, MA 02115. Tel.: 617-432-1925; Fax: 617-738-7664; E-mail:
elin{at}hms.harvard.edu.
The abbreviations used are:
PCR, polymerase
chain reaction; PAGE, polyacrylamide gel electrophoresis; AMP-PMP, adenylyl-imidodiphosphate; ATP S, adenosine
5'-O-[thiotriphosphate].
2
D. Georgellis, unpublished data.
3
D. Georgellis and O. Kwon, unpublished data.
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REFERENCES |
-
Hoch, J. A., and Silhavy, T. J.
(eds)
(1995)
Two-component Signal Transduction, American Society for Microbiology, Washington, D. C.
-
Rudolph, J.,
and Oesterhelt, D.
(1995)
EMBO J.
14,
667-673[Medline]
[Order article via Infotrieve]
-
Klenk, A.-P.,
Clayton, R. A.,
Tomb, J.-F.,
White, O.,
Nelson, K. E.,
Ketchum, K. A.,
Dodson, R. J.,
Gwinn, M.,
Hickey, E. K.,
Peterson, J. D.,
et al..
(1997)
Nature
290,
364-370
-
Ota, I. M.,
and Varshavsky, A.
(1993)
Science
262,
566-569
-
Maeda, T.,
Wurgler-Murphy, S. M.,
and Saito, H.
(1994)
Nature
369,
242-245[CrossRef][Medline]
[Order article via Infotrieve]
-
Alex, L. A.,
Borkovich, K. A.,
and Simon, M. I.
(1996)
Proc. Natl. Acad. Sci. U. S. A.
93,
3416-3421[Abstract/Free Full Text]
-
Chang, C.,
Kwok, S. F.,
Bleeker, A. B.,
and Meyerowitz, E. M.
(1993)
Science
262,
539-544
-
Hua, J.,
Chang, C.,
Sun, Q.,
and Meyerowitz, E. M.
(1995)
Science
269,
1712-1714
-
Chang, C.
(1996)
Trends Biochem. Sci.
21,
129-133[CrossRef][Medline]
[Order article via Infotrieve]
-
Iuchi, S.,
and Lin, E. C. C.
(1988)
Proc. Natl. Acad. Sci. U. S. A.
85,
1888-1892
-
Lynch, A. S.,
and Lin, E. C. C.
(1996)
in
Escherichia coli and Salmonella: Cellular and Molecular Biology (Neidhardt, F. C., Curtiss, R., III, Ingraham, J. L., Lin, E. C. C., Low, K. B., Magasanik, B., Reznikoff, W. S., Riley, M., Schaechter, M., and Umbarger, H. E., eds), 2nd Ed., pp. 1526-1538, American Society for Microbiology, Washington, D. C.
-
Iuchi, S.,
and Lin, E. C. C.
(1992)
J. Bacteriol.
174,
3972-3980[Abstract/Free Full Text]
-
Tsuzuki, M.,
Ishege, K.,
and Mizuno, T.
(1995)
Mol. Microbiol.
18,
953-962[CrossRef][Medline]
[Order article via Infotrieve]
-
Parkinson, J. S.,
and Kofoid, E. C.
(1992)
Annu. Rev. Genet.
26,
71-112
-
Ishige, K.,
Nagasawa, S.,
Tokishita, S.-I.,
and Mizuno, T.
(1994)
EMBO J.
13,
5195-5202[Medline]
[Order article via Infotrieve]
-
Kato, M.,
Mizuno, T.,
Shimizu, T.,
and Hakoshima, T.
(1997)
Cell
88,
717-723[CrossRef][Medline]
[Order article via Infotrieve]
-
Mizuno, T.
(1997)
DNA Res.
4,
161-168[Abstract]
-
Nagasawa, S.,
Tokishita, S.,
Aiba, H.,
and Mizuno, T.
(1992)
Mol. Microbiol.
6,
799-807[Medline]
[Order article via Infotrieve]
-
Arico, B.,
Miller, J. F.,
Roy, C.,
Stibitz, S.,
Monack, D.,
Falkow, S.,
Gross, R.,
and Rappuoli, R.
(1989)
Proc. Natl. Acad. Sci. U. S. A.
86,
6671-6675
-
Utsumi, R.,
Katayama, S.,
Taniguchi, M.,
Horie, T.,
Ikeda, M.,
Igaki, S.,
Nakagawa, H.,
Miwa, A.,
Tanabe, H.,
and Noda, M.
(1994)
Gene (Amst.)
140,
73-77[CrossRef][Medline]
[Order article via Infotrieve]
-
Hrabak, E. M.,
and Willis, D. K.
(1992)
J. Bacteriol.
174,
3011-3020[Abstract/Free Full Text]
-
Stevens, A. M.,
Sanders, J. M.,
Shoemaker, N. B.,
and Salyers, A. A.
(1992)
J. Bacteriol.
174,
2935-2942[Abstract/Free Full Text]
-
Jourlin, C.,
Bengrine, A.,
Chippaux, M.,
and Méjean, V.
(1996)
Mol. Microbiol.
20,
1297-1306[CrossRef][Medline]
[Order article via Infotrieve]
-
Georgellis, D.,
Lynch, A. S.,
and Lin, E. C. C.
(1997)
J. Bacteriol.
179,
5429-5435[Abstract/Free Full Text]
-
Burbulys, D.,
Trach, K. A.,
and Hoch, J. A.
(1991)
Cell
64,
545-552[CrossRef][Medline]
[Order article via Infotrieve]
-
Posas, F.,
Wurgler-Murphy, S. M.,
Maeda, T.,
Witten, E. A.,
Thai, T. C.,
and Saito, H.
(1996)
Cell
86,
865-875[CrossRef][Medline]
[Order article via Infotrieve]
-
Uhl, M. A.,
and Miller, J. F.
(1996)
EMBO J.
15,
1028-1036[Medline]
[Order article via Infotrieve]
-
Perraud, A.-L.,
Kimmel, B.,
Weiss, V.,
and Gross, R.
(1998)
Mol. Microbiol.
27,
875-887[CrossRef][Medline]
[Order article via Infotrieve]
-
Jourlin, C.,
Ansaldi, M.,
and Méjean, V.
(1997)
J. Mol. Biol.
267,
770-777[CrossRef][Medline]
[Order article via Infotrieve]
-
Lynch, A. S.,
and Lin, E. C. C.
(1996)
J. Bacteriol.
178,
6238-6249[Abstract/Free Full Text]
-
Iuchi, S.,
and Lin, E. C. C.
(1992)
J. Bacteriol.
174,
5617-5623[Abstract/Free Full Text]
-
Keener, J.,
and Kustu, S.
(1988)
Proc. Natl. Acad. Sci. U. S. A.
85,
4976-4980
-
Ninfa, A. J.,
and Magasanik, B.
(1986)
Proc. Natl. Acad. Sci. U. S. A.
83,
5909-5913
-
Aiba, H.,
Mizuno, T.,
and Mizushima, S.
(1989)
J. Biol. Chem.
264,
8563-8567[Abstract/Free Full Text]
-
Igo, M. M.,
Ninfa, A. J.,
Stock, J. B.,
and Silhavy, T. J.
(1989)
Genes Dev.
3,
1725-1734[Abstract/Free Full Text]
-
Dahl, M. K.,
Msadek, T.,
Kunst, F.,
and Rapoport, G.
(1992)
J. Biol. Chem.
267,
14509-14514[Abstract/Free Full Text]
-
Iuchi, S.
(1993)
J. Biol. Chem.
268,
23972-23980[Abstract/Free Full Text]
-
Wright, G. D.,
Holman, T. R.,
and Walsh, C. T.
(1993)
Biochemistry
32,
5057-5063[CrossRef][Medline]
[Order article via Infotrieve]
-
Aiba, H.,
Nakasai, F.,
Mizushima, S.,
and Mizuno, T.
(1989)
J. Biol. Chem.
264,
14090-14094[Abstract/Free Full Text]
-
Walker, M. S.,
and DeMoss, J. A.
(1993)
J. Biol. Chem.
268,
8391-8393[Abstract/Free Full Text]
-
Schröder, I.,
Wolin, C. D.,
Cavicchioli, R.,
and Gunsalus, R.
(1994)
J. Bacteriol.
176,
4985-4992[Abstract/Free Full Text]
-
Raivio, T. L.,
and Silhavy, T. J.
(1997)
J. Bacteriol.
179,
7724-7733[Abstract/Free Full Text]
-
Tanaka, T.,
Kawata, M.,
and Mukai, K.
(1991)
J. Bacteriol.
173,
5507-5515
-
Haldimann, A.,
Fisher, S. L.,
Daniels, L. L.,
Walsh, C. T.,
and Wanner, B. L.
(1997)
J. Bacteriol.
179,
5903-5913[Abstract/Free Full Text]
-
Lois, A. F.,
Weinstein, M.,
Ditta, G. S.,
and Helinski, D.
(1993)
J. Biol. Chem.
268,
4370-4375[Abstract/Free Full Text]
-
Skarphol, K.,
Waukau, J.,
and Forst, S. A.
(1997)
J. Bacteriol.
179,
1413-1416[Abstract/Free Full Text]
-
Hsing, W.,
and Silhavy, T. J.
(1997)
J. Bacteriol.
179,
3729-3735[Abstract/Free Full Text]
-
Magasanik, B.
(1996)
in
Regulation of Gene Expression in Escherichia coli (Lin, E. C. C., and Lynch, A. S., eds), pp. 281-287, R. G. Landes Co., Austin, TX
-
Hess, J. F.,
Oosawa, K.,
Kaplan, N.,
and Simon, M. I.
(1988)
Cell
53,
79-87[CrossRef][Medline]
[Order article via Infotrieve]
-
Sanna, M. G.,
Swanson, R. V.,
Bourret, R. B.,
and Simon, M. I.
(1995)
Mol. Microbiol.
15,
1069-1079[Medline]
[Order article via Infotrieve]
-
Bren, A.,
Welch, M.,
Blat, Y.,
and Eisenbach, M.
(1996)
Proc. Natl. Acad. Sci. U. S. A.
93,
10090-10093[Abstract/Free Full Text]
-
Perego, M.,
Glaser, P.,
and Hoch, J. A.
(1996)
Mol. Microbiol.
19,
1151-1157[Medline]
[Order article via Infotrieve]
-
Ohlsen, K. L.,
Grimsley, J. K.,
and Hoch, J. A.
(1994)
Proc. Natl. Acad. Sci. U. S. A.
91,
1756-1760[Abstract/Free Full Text]
-
Perego, M.,
Hanstein, C.,
Welsh, K. M.,
Djavakhishvili, T.,
Glaser, P.,
and Hoch, J. A.
(1994)
Cell
79,
1047-1055[CrossRef][Medline]
[Order article via Infotrieve]
-
Perego, M.,
and Hoch, J. A.
(1996)
Proc. Natl. Acad. Sci. U. S. A.
93,
1549-1553[Abstract/Free Full Text]
-
Perego, M.
(1997)
Proc. Natl. Acad. Sci. U. S. A.
94,
8612-8617[Abstract/Free Full Text]
-
Stock, J. B.,
Surette, M. G.,
Levit, M.,
and Park, P.
(1995)
in
Two-component Signal Transduction (Hoch, J. A., and Silhavy, T. J., eds), pp. 25-52, American Society for Microbiology, Washington, D. C.
-
Matsushika, A.,
and Mizuno, T.
(1998)
J. Bacteriol.
180,
3973-3977[Abstract/Free Full Text]
-
Ogina, T.,
Matsubara, M.,
Kato, N.,
Nakamura, Y.,
and Mizuno, T.
(1998)
Mol. Microbiol.
27,
573-585[CrossRef][Medline]
[Order article via Infotrieve]
-
Uhl, M. A.,
and Miller, J. F.
(1996)
J. Biol. Chem.
271,
33176-33180[Abstract/Free Full Text]
-
Iuchi, S.,
Matsuda, Z.,
Fujiwara, T.,
and Lin, E. C. C.
(1990)
Mol. Microbiol.
4,
715-727[CrossRef][Medline]
[Order article via Infotrieve]
-
Boyd, D.,
Traxler, B.,
and Beckwith, J.
(1993)
J. Bacteriol.
175,
553-556[Abstract/Free Full Text]
-
Landschulz, W. H.,
Johnson, P. F.,
and McKnight, S. L.
(1988)
Science
240,
1759-1764
-
Parkinson, J. S.
(1995)
in
Two-component Signal Transduction (Hoch, J. A., and Silhavy, T. J., eds), pp. 9-24, American Society for Microbiology, Washington, D. C.
-
Iuchi, S.,
and Lin, E. C. C.
(1995)
in
Two-component Signal Transduction (Hoch, J. A., and Silhavy, T. J., eds), pp. 223-232, American Society for Microbiology, Washington, D. C.
Copyright © 1998 by The American Society for Biochemistry and Molecular Biology, Inc.

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