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J Biol Chem, Vol. 274, Issue 31, 21741-21745, July 30, 1999
From the Department of Molecular Microbiology and Biotechnology,
Tel-Aviv University, Ramat Aviv 69978, Israel
Internal initiation of translation, whereby
ribosomes are directed to internal AUG codon independently of the 5'
end of the mRNA, has been observed rarely in higher eucaryotes and
has not been demonstrated in living yeast. We report here that starved yeast cells are capable of initiating translation of a dicistronic message internally. The studied element that functions as an internal ribosome entry site (IRES) is hardly functional or not functional at
all in logarithmically growing cells. Moreover, during the logarithmic
growth phase, this element seems to inhibit translation reinitiation
when placed as an intercistronic spacer or to inhibit translation when
placed in the 5'-untranslated region of a monocistronic message.
Inhibition of translation is likely due to the putative strong
secondary structure of the IRES that interferes with the cap-dependent scanning process. When cells exit the
logarithmic growth phase, or when artificially starved for carbon
source, translation of the IRES-containing messages is substantially
induced. Our findings imply that the capacity to translate internally
is a characteristic of starved rather than vegetatively growing yeast cells.
The ribosome scanning model has been originally proposed by Kozak
(1) to explain how the translation process is initiated. Numerous
studies have corroborated the model whereby the initiation complex is
assembled near or at the 5' end of the mRNA, facilitated by the
interaction of the cap structure with the eucaryotic initiation factor
4E, and starts scanning the mRNA until the first AUG is encountered
(for recent review see Ref. 2). An alternative mode of selecting an
initiation codon, whereby ribosomes are directed to an internal AUG by
an internal ribosome entry sequence
(IRES),1 has also been
demonstrated. Well documented cases of internal initiation events are
those of the uncapped picornaviral mRNAs (3). IRESes have also been
found in the 5'-untranslated region (5'-UTR) of several cellular
mRNAs (4-13). During evolution, IRESes have been utilized as
targets for translation regulation during normal differentiation and
development. For example, an IRES was shown to play a role in the
translation of platelet-derived growth factor 2 mRNA that increases
after megacaryocitic cells undergo terminal differentiation (10).
IRESes have also been found to mediate the differential translation of
Antenapedia and Ultrabithorax during Drosophila
melanogaster development (6, 12).
Surprisingly, no IRES has been shown to function in yeasts, despite the
observations that the yeast cell-free system is capable of recognizing
plant viral IRESes (14) as well as natural yeast leader sequences (15).
Attempts to promote internal initiation in living yeast cells by using
IRESes of poliovirus (16) and encephalomyocarditis virus (17) have thus
far failed. These studies were done with optimally growing cells. In
their natural environment, however, yeast occasionally encounter
starvation and enter into a distinct quiescent state called stationary
phase (SP) (reviewed in Refs. 18 and 19). In the test tube, when yeast
cells are cultured in rich media (e.g. YPD), nutrient
consumption is gradual and entry into SP occurs in a stepwise manner.
Thus, cells cultured in YPD display a characteristic growth pattern in
which log phase is followed by a diauxic shift, a slow growth phase,
and then by SP. During the diauxic shift, cell metabolism changes from
mainly fermentation to aerobic metabolism (20), accompanied by
morphological and biochemical changes (21-25). To preserve energy
during SP, yeast cells shut off the transcription of most genes.
Consequently, the global mRNA level is reduced about 35-fold (27,
28). Protein production during SP is reduced even more dramatically
(200-300-fold) (29), suggesting that the availability of mRNAs is
not the rate-limiting factor of protein synthesis. Instead, translation
during SP is found to be inefficient or even actively repressed.
Nevertheless, expression of a small repertoire of genes is not
repressed in SP (18, 19, 27, 29). It is quite possible that the control
of this dramatic strategic change in gene expression requires
SP-specific mechanisms for ensuring the synthesis of the small
repertoire of proteins that are essential for life during starvation.
Here we show that yeast cells are capable of recognizing an IRES
element. The RNA element that functions as an IRES was found by
serendipity and contains a sequence from the Escherichia coli lacI. Strikingly, the capacity to recognize this IRES is found in
starved cells but not in growing cells. We therefore call this IRES
stationary phase-induced IRES, SIRES.
Fortuitous Discovery of SIRES--
By adapting a colony color
test, we utilized the ACT1p-UBI4-lacZ reporter,
described under "Results," and searched for mutants that failed to
repress the reporter gene during SP. We thus identified a cell line
whose reporter produced high levels of Plasmid Constructions--
Constructs are schematized in Fig.
1A. Construct 1 was described previously (26). Construct 2 was made by inserting SIRES at the HindIII site, located
in-between ACT1p and UBI4, into construct 1. For
construct 3, green fluorescent protein (GFP) was amplified by
PCR reaction, using OMC116 (5'-CCCAAGCTTGGATCCTAAAGATGA
GTAAAGGAG-3') and OMC117
(5'-CCCAAGCTTTCTAGATTATCATTCATCCATGCCATGTG-3'3') as the forward and reverse primers, respectively.
HindIII sites are underlined and were used to introduce the
PCR fragment into HindIII site of construct 1 (between
ACT1p and UBI4). Two in-frame stop codons (marked
by bold letters) are introduced immediately after the last codon of the
GFP. XbaI was introduced downstream of the
HindIII site and was used for inserting the intercistronic spacers of constructs 4-6. For constructs 4-6, intercistronic spacers
were amplified by PCR technology, using primers that contained the
XbaI site at their 5' ends. The spacers were introduced in the single XbaI site of construct 3. All constructs were
subject to sequencing analysis.
Detection of GFP--
Cell extract was equilibrated with Laemmli
sample buffer and kept at room temperature. Ten µg were subjected to
SDS-PAGE analysis. Fluorescent bands were detected by exposing the gel
to Image reader FLA2000 (Fujifilm) at 473 nm excitation and using the
520 nm filter.
SIRES, an RNA Element That Mediates Translational Repression during
the Logarithmic Growth Phase and Translational Enhancement during
Post-logarithmic Phases--
SIRES has been discovered by serendipity
during a screen for SP-specific mutations (see "Experimental
Procedures"). It contains a sequence from the E. coli lacI
gene and a portion of a multiple cloning region. The sequence does not
contain AUG or other codons that can function as translation start
sites (Fig. 1B). It contains a
high GC content (62%) and, by subjecting its sequence to a folding algorithm (foldRNA, GCG Sequence Analysis Package), was found to be
capable of forming a highly structured molecule (
The differential translation of the control mRNA and the
SIRES-containing mRNA during log phase, when the translation of the former was higher than that of the latter, underwent a significant twist after the diauxic shift. Specifically, expression of
ACT1p-UBI4-lacZ was repressed as cells
exited the log phase (see above; Fig. 2, left
panels). This result represents the general repression of translation characteristic of starved cells (29, 34, 39). In contrast,
expression of ACT1p-SIRES-UBI4-lacZ
was induced after the diauxic shift, as demonstrated by the increase in
the SIRES Functions as a Stationary Phase-induced IRES--
Two
observations raised the possibility that SIRES mediates cap-independent
translation. First, SIRES is capable of forming a highly stable
secondary structure, which is likely to impede the
cap-dependent ribosome scanning process (see above).
Second, SIRES-mediated translation is enhanced when the bulk of the
translation machinery is compromised, raising the possibility that it
is recognized by a different or modified machinery. To study the mode
of action of SIRES, a series of dicistronic constructs were made (Fig.
1A). Dicistronic constructs have been effectively used
in vivo to demonstrate the existence of IRES (3, 5, 6, 8,
13). As most ribosomes fail to continue through the intercistronic
spacer, the translation of the second cistron is greatly reduced,
unless preceded by an IRES. Using these constructs we attempted to
answer the following questions. (i) Can SIRES promote translation of the second cistron by internal initiation? (ii) Is the translation of
the second cistron influenced by that of the first cistron, or is the
translation of the two cistrons controlled independently? (iii) Is the
translation of the second cistron induced in SP like that of the
SIRES-containing monocistronic mRNA?
The gene encoding the GFP was chosen as the first cistron in the
dicistronic constructs, and the second cistron was
UBI4-lacZ. (Fig. 1A). To enhance
translational termination of the first cistron and to minimize
reinitiation of the second one due to "leakiness" from the first
cistron, we introduced an additional stop codon immediately downstream
to the natural GFP stop codon. SIRES was placed as the intercistronic
region, downstream to the stop codons. Three SIRES-less constructs were
engineered to be used as controls. One control construct contained no
intercistronic region (except for two restriction sites of 12 bp used
for the constructions). Two other control sequences were introduced in
lieu of SIRES; a 104-bp sequence (from the 5'-noncoding region of
UBI4) or a 282-bp sequence (from the 5'-noncoding region of
HAP4).
To determine the effect of SIRES on the translation of both cistrons,
equal amounts of protein, produced by the transformants with the
different constructs, were separated by SDS-PAGE; the GFP level was
assayed by monitoring its fluorescent intensity, and the
The expression pattern of the SIRES-containing construct was compared
with that of the control constructs. In cells carrying the spacerless
dicistronic mRNA no
Interestingly, the level of
We then examined whether the SIRES-containing construct gave rise to
one transcript that encompasses both GFP and
UBI4-lacZ genes. Transcripts were analyzed by
Northern blot hybridization using either GFP or lacZ as
probes. Fig. 4 shows that the
SIRES-containing dicistronic gene produced a dicistronic transcript,
which migrated slower than the monocistronic transcript (compare
lane 1 with lanes 2-5) and hybridized with both
probes. The dicistronic message was by far the most prominent RNA
species that was detected by both probes. In addition to this band, a
few minor bands were detected after overexposure. These RNA species
could not have promoted translation of the second cistron by an
end-initiated scanning process for the following reasons: (i) no RNA
species was detected that hybridized only (or preferentially) with
lacZ but not with the GFP probe, indicating that no
transcript has a 5' end located downstream of the GFP open reading
frame that might promote a cap-dependent translation of the
second cistron, and (ii) the intensities of the minor bands were not
increased after the shift from log to post-log phases. Because SIRES
mediates an increase in the expression of the second cistron in
post-log phases (see Fig. 3), this increase cannot be attributed to one of the minor bands. We conclude that the cells can support an induced
translation of the second cistron during post-log phases only by
internal initiation of translation (see also the note in the legend to
Fig. 4).
Taken together, the results shown in Figs. 3 and 4 indicate that
translation of the two cistrons that are separated by SIRES is
controlled differently. Thus, following the shift from log to post-log
phases, when the translation of the first cistron decreases,
translation of the second cistron increases. We conclude that, after
cells exit the log phase, SIRES promotes the initiation of the second
cistron translation from an internal site in the mRNA. Little or no
internal initiation can be detected in growing cells.
Previous experiments failed to identify IRESes in vegetatively growing
yeast (see introduction). The lack of success of finding IRESes in
dividing cells, taken together with our results that the capacity to
recognize an IRES is found in starved cells, raises the possibility
that putative IRESes are not recognized in optimally growing yeast
cells but rather in starved, or otherwise stressed, cells. Cumulative
data from several laboratories suggest that IRESes are best recognized
when the main initiation pathway is compromised. The most remarkable
examples are the observations that the activities of picornaviral
IRESes (3) and BiP IRES (4, 5) are enhanced as a result of the
inactivation of the cap-dependent mechanism. Similarly,
when yeast encounter starvation, the overall translation declines by
more than 2 orders of magnitude (29, 34). We propose that a capacity to
recognize putative natural SIRESes has evolved in yeast to provide a
means to escape the general loss of the cap-dependent
translation capacity, and that SIRES is fortuitously recognized by this
machinery. Thus, putative natural SIRESes are likely to render the
translation of some mRNAs, encoding proteins that are important for
surviving starvation, independent of the main initiation pathway. SIRES can be utilized in the future to isolate factors that are capable of
identifying IRESes during starvation. Identifying these factors may
also help with the identification of natural SIRESes.
It has been found that a yeast cell-free system, prepared from
logarithmically growing Saccharomyces cerevisiae cells, can recognize heterologous authentic IRESes (14, 15) or yeast UTR sequences
as IRESes (15). However, natural IRESes have not been identified in
living yeast cells. This discrepancy suggests that, for the
identification of IRESes, the currently available in vitro
systems might be irrelevant to the biological systems. Alternatively,
it is possible that the capacity to recognize IRESes exists also in log
phase yeast cells, and the in vitro system reliably detects
this capacity. However, this capacity is repressed in dividing cells,
either because the cap-recognizing machinery competes very efficiently
with the IRES-recognizing machinery or because dividing cells express
specific repressor(s), or because of both possibilities. According to
this view, one or more of these repressing features is lost in the
in vitro system.
Starvation-induced increase of translation has been previously
demonstrated in the case of GCN4 (review in Ref. 35). In a
series of studies, Hinnebusch and his co-workers (35) have shown that
induction of GCN4 translation in response to amino acid or
purine deprivation is mediated by four short open reading frames
(uORFs) in the leader of its mRNA. The uORFs inhibit the GCN4 translation in nonstarved cells by restricting the
progression of the scanning ribosomes through the leader. Upon
starvation, the scanning ribosomes bypass the most inhibitory uORF,
uORF4, and repression is partially relieved, leading to an increased translation of the GCN4 ORF (35). Apparently, the
starvation-induced up-regulation of GCN4 differs from that
mediated by SIRES. First, up-regulation of GCN4 translation
results from a derepression mechanism that is imposed by the uORFs,
whereas the SIRES-mediated translation seems to be governed by
activation. Second, up-regulation of GCN4 mRNA
translation is cap-dependent, whereas that mediated by
SIRES is not. We propose that during starvation, when the general cap-dependent translation is repressed (29, 34), there are at least two types of mechanisms that mediate the translation of a
small repertoire of mRNAs whose products are important for coping
with starvation.
We would like to thank O. Elroy-Stein, S. Ben-Yehuda, and N. Koleteva-Levine for critically reading the
manuscript and A. Varshavsky and A. Sentenac for plasmids and
antibodies. We are grateful to all members of Dr. Choder's laboratory
for discussions, advice, and helpful suggestions.
*
This work was supported by the Israel Science Foundation
founded by the Israel Academy of Sciences and Humanities (to M. C.).The costs of publication of this
article were defrayed in part by the
payment of page charges. The article
must therefore be hereby marked
"advertisement" in
accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
The abbreviations used are:
IRES, internal
ribosome entry sequence;
SP, stationary phase;
SP1, 1 day in SP;
SP4, 4
days in SP;
SG, slow growth phase;
UTR, untranslated region;
GFP, green
fluorescent protein;
PCR, polymerase chain reaction;
PAGE, polyacrylamide gel electrophoresis;
Starved Saccharomyces cerevisiae Cells
Have the Capacity to Support Internal Initiation of Translation*
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ABSTRACT
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS AND DISCUSSION
REFERENCES
![]()
INTRODUCTION
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS AND DISCUSSION
REFERENCES
![]()
EXPERIMENTAL PROCEDURES
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS AND DISCUSSION
REFERENCES
gal in SP. Later, we
discovered that the defect was not in the cellular genome but, instead,
in the plasmid that underwent a rearrangement event. A series of
experiments have demonstrated that the RNA element, which was
responsible for the translational induction in SP, contains the
sequence shown in Fig. 1B.
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RESULTS AND DISCUSSION
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS AND DISCUSSION
REFERENCES
G =
43.8 kcal mol
1). To study the effect of SIRES on the
translation we used the UBI4-lacZ, encoding a
ubiquitin-
gal fusion that contains isoleucine at the junction
between the two protein sequences. Shortly after translation, the
ubiquitin is cleaved off the fusion protein, and the resulting
gal
is short lived both in dividing (30) and in stationary cells (39). This
reporter thus enables the coupling between the level of the unstable
gal and the rate of its synthesis, even when this rate is decreased
(39). Transcription of the reporter gene is governed by ACT1
promoter fragment, spanning positions +1 to
472 relative to the first
ACT1 ATG codon and covering the previously described
regulatory elements and transcription start sites of the gene (32)
(construct 1 in Fig. 1A). SIRES was introduced downstream of
the ACT1p and upstream of the UBI4 translation
start codon in the ACT1p-UBI4-lacZ, as
schematically shown in Figs. 1A and 2A,
right panels (see also "Experimental Procedures"). The inclusion of SIRES had little effect on the level
of the ACT1p-UBI4-lacZ transcript
(Fig. 2B, compare
left and right panels). In contrast,
the presence of SIRES had a dramatic effect on the level of the
translated protein, shown in Fig. 2C (compare left
and right panels). During the logarithmic growth phase,
the
gal level in cells carrying the SIRES-containing construct was
two orders of magnitude lower than that in cells carrying the control
construct (log lanes in Fig. 2C, compare the
right and left panels). Thus, in
logarithmically growing cells, the presence of SIRES in the 5'-UTR
inhibits translation. This result is consistent with previous
observations demonstrating that in yeast the inclusion in a 5'-UTR of
an element that has the potential to form a secondary structure with a
stability of
28 kcal mol
1 inhibits translation by at
least 98% (33). However, other explanations for the SIRES-mediated
translational repression cannot be ruled out. For example SIRES may
give the mRNA a competitive disadvantage.

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Fig. 1.
A, constructs used in this study.
UBI4 box represents the entire gene starting with its ATG.
lacZ is fused in-frame with the UBI4 ORF.
Isoleucine codon is placed at the junction between UBI4 and
lacZ, instead of the UBI4 stop codon. For
expression scheme see Ref. 39. GFP ORF is followed by two consecutive
and in-frame stop codons (TGATAA). The spacer between the second stop
codon and the first UBI4 ATG in construct 3 is 12 bp
(consists of HindIII and XbaI restriction sites).
The 104-bp spacer in construct 5 has the sequence of the two
restriction sites and UBI4 5'-noncoding region (spanning the
position +3 to
89 bp from the ATG codon), placed in the inverse
orientation. The 282-bp spacer in construct 6 has the sequence of the
two restriction sites and HAP4 UTR (spanning the position
3 to
272 bp from the ATG codon) (15) placed in the inverse
orientation. B, SIRES-sequence.

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Fig. 2.
Translation of SIRES-containing mRNA is
repressed in log phase cells and induced in post-log phase cells.
SUB62 cells (MATa, lys2-801,
leu2-3, 112, ura3-52,
his3-
200, trp1-1 (am)) (26, 36)
carrying either the control fusion gene (left
panels) or the SIRES-containing gene (right
panels) were grown to SP. Samples containing equal numbers
of cells were taken at the growth stages indicated at the
top or bottom of each panel and analyzed as
indicated. A, construct scheme. B, mRNA
levels were determined by Northern blot hybridization as described
previously (27, 28). Five µg of RNA were loaded per lane. To detect
UBI4-lacZ mRNA, either UBI4 or
ACT1 noncoding region (which was hybridized to the
ACT1 sequence of the 5'-UTR) was used. Each of these probes
detected the same transcript and gave similar results. Shown are the
results using UBI4 as the probe. EtBr staining of the rRNAs
(18 S and 25 S) is shown at the bottom to demonstrate equal
loading. Amounts of UBI4-lacZ mRNA and rRNAs were
quantitated by scanning the autoradiograms and the EtBr-stained bands,
respectively, using ImageMaster 1D (Amersham Pharmacia Biotech). The
obtained ratios of mRNA/rRNA are indicated. These values were
normalized to that of the log sample in the left
panel. Note that the rRNA content per cell is reduced by
2-3-fold after the transition from log to SP (26); accordingly, the
observed decrease in the calculated ratios of mRNA/rRNA is an
underestimate of the actual decrease in the amount of transcript on a
per cell basis. Note also that both the mRNA and the rRNAs shown in
the SG lane migrated faster than their counterparts in the other lanes,
probably due to a salt effect in these samples. C, protein
level was determined by Western analysis as described previously (37,
38). Anti
gal antibodies (Promega) were used at 1:2000 dilution.
Twenty five µg of protein was loaded per lane. Rpb4p, whose level is
little changed along the growth to SP (37), is shown to demonstrate
equal loading. Enzymatic activity of
gal was done as described (31,
39). Growth stages: Log, logarithmic phase; SG,
slow growth phase; SP1, 1 day in SP; SP4, 4 days
in SP.
gal product and activity (Fig. 2C, right
panels). Note that, in post-log phases, the translation of
the SIRES-containing mRNA was higher than the translation of the
control mRNA, suggesting that the induction was due to activation
rather than derepression. Interestingly, the increase in
gal level
and activity occurred concomitantly with a decrease in the mRNA
level (compare the changes in the mRNA levels in Fig.
2B, right panel, with those of the
protein in Fig. 2C, right panel),
indicating that the translatability of the SIRES-containing mRNA
enhanced more substantially than the observed increase of the protein.
Remarkably, the enhanced translation of the SIRES-containing mRNA
occurred concomitantly with the general repression of translation.
Attempts to identify the environmental stimuli that lead to the
SIRES-mediated translational induction revealed that depletion of the
sugar resulted in a specific translational enhancement of the
SIRES-containing mRNA (results not shown).
gal level
was determined by Western analysis. Fig.
3B (lanes 14-17)
shows that the level of
gal produced by the SIRES-containing dicistronic mRNA was almost undetectable in log phase cells and substantially increased in post-log phases. The induced synthesis of
gal in post-log cells occurred concomitantly with the observed decrease in the mRNA level (see below), indicating that the
translatability of the SIRES-containing mRNA in post-log phases was
enhanced even more than can be deduced from the observed increase of
the protein. In contrast to translation of the second cistron,
translation of the first cistron was high in log phase and lower in
post-log phases (Fig. 3A, lanes 14-17). We
suppose that the decrease of GFP translation in post-log phases is
stronger than the observed decrease in its steady state level because
GFP, like most proteins (29), is highly stable in SP. The different
expression behavior of the two cistrons indicates that, after the
diauxic shift, the translation of the two cistrons is independently
controlled.

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Fig. 3.
Translation of dicistronic mRNAs.
SIRES mediates internal translation of a second cistron, independently
of the translation of the first cistron. Cell lines, each carrying a
different dicistronic construct, were grown to SP. At the growth
stages, indicated at the top of panel A, cell
samples were taken for determining their GFP levels (A) or
gal levels as in Fig. 2C. Lane 1 shows a
control extract of the parental strain not carrying a plasmid.
Lanes 2-5 show extracts from cells carrying construct 3 (Fig. 1A); lanes 6-9, construct 5; lanes
10-13, construct 6; lanes 14-17, construct 4. Simplified version of the construct schemes are shown at the
top of the figure. 1st and 2nd refer
to the first and second cistrons, respectively. Spacer length, written
at the top of the figure, is defined as the number of base
pairs between the last GFP stop codon and the first ATG of the second
cistron (including restriction sites). The upper
panel of B shows a standard exposure (~12 s) of
the film to the ECL reagents. The lower panel
shows ~50-fold longer exposure (10 min). Growth stages are as
described in Fig. 2.
gal was detected, indicating that following
termination of the GFP translation no reinitiation occurred. It was
demonstrated previously that reinitiation can occur in yeast and that
the spacing between the sites of termination and initiation is
important (2). We therefore examined expression of the second cistron
in cells carrying the other control constructs. Indeed, the inclusion
of either a 104- or a 282-nucleotide spacer in the dicistronic mRNA
permitted little synthesis of
gal during log phase, which was
detected only after overexposure (lanes 6 and
10 in Fig. 3B, lower
panel). This
gal synthesis is most probably the result of
translational reinitiation. In post-log phases, the level of the
gal
expressed by these control dicistronic mRNAs declined (lanes
7-9 and 11-13 in Fig. 3B, lower
panel). This is in contrast with the increase in the level
of
gal expressed by the SIRES-containing mRNA (lanes
15-17 in Fig. 3B). In summary, the differences between
the expression pattern of the control constructs and the expression
pattern of the SIRES-containing construct indicates that the induced
synthesis of the second cistron is SIRES-specific. We consider the
possibility that the SIRES-mediated translation of the second cistron
is due to reinitiation as unlikely because it is much higher than the
translation of the second cistron of the control mRNAs.
Furthermore, the observation that following the diauxic shift the
translation of the two cistrons that are separated by SIRES is
independently controlled (i.e. one is repressed and the
other one is induced) strongly argues against the reinitiation possibility.
gal produced by the SIRES-containing
mRNA during log phase was even lower than that produced by the
mRNA containing the control spacers (compare lane 14 with lanes 6 and 10, in Fig. 3B,
lower panel). This result is consistent with our
suggestion that SIRES, which is not active as IRES in log phase,
impedes the scanning-mediated reinitiation process.

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Fig. 4.
Transcripts made in cells carrying the
SIRES-containing dicistronic construct. Cells carrying the
SIRES-containing dicistronic construct (construct 4 in Fig.
1A) were grown to SP. At the growth stages, indicated at the
top, cell samples were taken for RNA analysis, as in Fig. 2.
RNA samples (5 µg/lane) were loaded in duplicate. One duplicate was
hybridized with a radiolabled lacZ probe (left
panel), whereas the other with a GFP probe (right
panel). RNA samples from cells carrying
ACT1p-SIRES-UBI4-lacZ (construct 2 in Fig.
1A) are also shown (lanes 1 and
6). Growth stages are as described in Fig. 2. Notes: Shown
is a relatively long exposure to help us detect minor bands. Same minor
bands are detected by both probes. Minor bands are detected where rRNAs
migrate (appear as a "band" producing lighter background), and we
suspect that they are artifactual. Moreover, the GFP transcript
contains AUG codon located 10 codons upstream and in-frame with the
stop codons. Therefore, even if the minor transcripts do contain GFP
sequence they would most likely be translated as dicistronic
messages.
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ACKNOWLEDGEMENTS
![]()
FOOTNOTES
To whom correspondence should be addressed. Tel.: 972-3640-9030;
Fax: 972-3640-9407; E-mail: lcchoder@post.tau.ac.il.
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ABBREVIATIONS
gal,
-galactosidase;
bp, base pair(s);
ORF, open reading frame.
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REFERENCES
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS AND DISCUSSION
REFERENCES
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