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J Biol Chem, Vol. 274, Issue 36, 25608-25612, September 3, 1999
,
, and
From the Glycobiology Program, Cancer Research Center, The Burnham
Institute, La Jolla, California 92037 and the
Laboratory of Reproductive and Developmental Toxicology,
NIEHS, National Institutes of Health,
Research Triangle Park, North Carolina 27709
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ABSTRACT |
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HNK-1 glycan,
sulfo HNK-1 glycan is a unique carbohydrate expressed in a cell-type
specific manner (1, 2). In particular, HNK-1 glycan has been found in a
number of neural cell adhesion molecules including the neural cell
adhesion molecule, myelin-associated glycoprotein, L1, contactin, and
P0 (3-7). Carbohydrate structural analysis of P0 showed that HNK-1
glycan is present in biantennary bisected N-glycan as
sulfo To elucidate the roles of HNK-1 glycan in molecular details, we and
others have cloned a sulfotransferase HNK-1ST that forms HNK-1 glycan
on neural cell adhesion molecule and glycolipids (18, 19). This was
possible because
3GlcA
1
3Gal
1
4GlcNAc
R, is uniquely enriched in
neural cells and natural killer cells and is thought to play important
roles in cell-cell interaction. HNK-1 glycan synthesis is dependent on
HNK-1 sulfotransferase (HNK-1ST), and cDNAs encoding human and rat
HNK-1ST have been recently cloned. HNK-1ST belongs to the
sulfotransferase gene family, which shares two homologous sequences in
their catalytic domains. In the present study, we have individually
mutated amino acid residues in these conserved sequences and determined
how such mutations affect the binding to the donor substrate, adenosine
3'-phosphate 5'-phosphosulfate, and an acceptor. Mutations of
Lys128, Arg189, Asp190,
Pro191, and Ser197 to Ala all abolished the
enzymatic activity. When Lys128 and Asp190 were
conservatively mutated to Arg and Glu, respectively, however, the
mutated enzymes still maintained residual activity, and both mutant
enzymes still bound to adenosine 3',5'-diphosphate-agarose. K128R and
D190E mutant enzymes, on the other hand, exhibited reduced affinity to
the acceptor as demonstrated by kinetic studies. These findings,
together with those on the crystal structure of estrogen sulfotransferase and heparan sulfate
N-deacetylase/sulfotransferase, suggest that
Lys128 may be close to the 3-hydroxyl group of
-glucuronic acid in a HNK-1 acceptor. In contrast, the effect by
mutation at Asp190 may be due to conformational change
because this amino acid and Pro191 reside in a transition
of the secondary structure of the enzyme. These results indicate that
conserved amino acid residues in HNK-1ST play roles in maintaining a
functional conformation and are directly involved in binding to donor
and acceptor substrates.
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INTRODUCTION
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
GlcA
1
3Gal
1
4GlcNAc
1
2Man
1
6[R
Man
1
3(GlcNAc
1
4)]Man
1
4GlcNAc
1
4GlcNAc
Asn (8). The capping structure of this HNK-1 epitope is the same as
those found in glycolipids such as
sulfo
3GlcA
1
3Gal
1
4GlcNAc
1
3Gal
1
4Glc
ceramide (9, 10). The expression of HNK-1 glycan is spatially and temporally
regulated and is found on migrating neural crest cells, cerebellum, and
myelinating Schwann cells in motor neurons but not on those in the
sensory neurons (11-13). Neural outgrowth of mouse motor neurons was
facilitated much better by HNK-1 glycolipid substratum than sulfatide
or GD1b ganglioside substratum (14). Complementary to this finding, the
inhibition of neurite outgrowth by HNK-1 glycan was not observed once
the sulfate group was removed (15). It has also been shown that the
homophilic interaction of P0 depends on carbohydrate-protein
interaction and anti-HNK-1 antibody inhibits this interaction (16,
17).
1,3-glucuronosyltransferase that forms a HNK-1
precursor structure was cloned before (20). When we compared the amino
acid sequence of HNK-1ST to those of Golgi-associated sulfotransferases
cloned before (21-24), we noticed that amino acid sequence motifs,
including the sequence RDP, are shared by those enzymes (18). Although
we did not initially detect its homology with cytosolic
sulfotransferases, subsequent studies revealed that there are two
regions in the catalytic domain that are shared by all
sulfotransferases cloned so far (25, 26). This homology was also
proposed because the crystal structure of a mouse estrogen
sulfotransferase became available (27), and the amino acid residues
involved in the interaction with the 5'-phosphosulfate or 3'-phosphate
group of PAPS were identified (Fig. 1).
The studies thus revealed that a lysine or arginine residue is shared
by all sulfotransferases cloned to date in the 5'-phosphosulfate
binding (5'-PSB)1 site and an
arginine residue is shared by almost all sulfotransferases at the
3'-phosphate binding (3'-PB) motif (25-27). Moreover, the entirely
conserved serine residue at the 3'-PB loop apparently provides a
hydrogen bond with a hydroxyl group of 3'-phosphate (27). These
studies, however, did not reveal how those or other amino acids are
involved in the interaction with an acceptor substrate.

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Fig. 1.
Comparison of amino acid sequences of
sulfotransferases. PAPS binding sites of cytosolic and
Golgi-associated sulfotransferases are shown based on the crystal
structure of estrogen sulfotransferase and heparan sulfate
N-deacetylase/sulfotransferase (27, 28). 3'-PB sites were
also suggested by comparison of Golgi-associated sulfotransferases
(18). The following sequences are compared: mouse estrogen
sulfotransferase, moEST (36); mouse phenol sulfotransferase,
moPST (37); mouse hydroxysteroid sulfotransferase,
moHST (38); rabbit amine sulfotransferase, rbAST
(39); plant flavonol sulfotransferase, FST (40);
Rhizobium sp. sulfotransferase, NodH (41); rat
heparan sulfate N-deacetylase/sulfotransferase,
raHSND/NST (42); chicken chondroitin sulfate
D-N-acetylglucosamine-6-O-sulfotransferase,
chCS6ST (21); human galactosylceramine 3'-sulfotransferase,
huGalCerST (22); hamster heparan sulfate
L-iduronic acid 2-O-sulfotransferase,
haHS2OST (23); human heparan sulfate
D-glucosamine 3-O-sulfotransferase,
huHS3OST (24); human keratan sulfate D-galactose
6-O-sulfotransferase, huKSGal6ST (43); human
heparan sulfate D-N-sulfoglucosamine
6-O-sulfotransferase, huHS6OST (44); human HNK-1
sulfotransferase, huHNK-1ST (18); mouse
N-acetylglucosamine 6-O-sulfotransferase,
moGlcNAc6ST (45); human tyrosylprotein sulfotransferase,
huTPST (46); mouse L-selectin ligand
sulfotransferase, moLSST (47); Drosophila
segregation disorder protein, SD (48).
In the present study, we individually mutated five different amino acid
residues in the 5'-PSB and 3'-PB sites of HNK-1ST by site-directed
mutagenesis. We first assayed those mutant enzymes for transfer of
[35S]sulfate from [35S]PAPS, and then
catalytic properties were obtained. Those mutants were also assayed for
their binding to a PAP analogue of PAPS. Finally, these results were
interpreted in relation to a three-dimensional structure inferred from
the crystal structures determined for estrogen sulfotransferase and the
human heparan sulfate N-deacetylase/sulfotransferase, HSNST
(27, 28). Our results strongly suggest that these two regions of the
catalytic domain, in particular those amino acids in 5'-PSB site, are
involved in the interaction with both acceptor and donor substrates.
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EXPERIMENTAL PROCEDURES |
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Site-directed Mutagenesis-- The cDNA encoding HNK-1ST was cloned as described previously (18). A cDNA encoding a catalytic domain of HNK-1ST fused with an IgG-binding domain of protein A was constructed as described before (18). The plasmid, pcDNAI-A·HNK-1ST (18), encoding a soluble protein A-HNK-1ST fusion protein was digested with BamHI and SpeI to release a 1.6-kilobase pair cDNA fragment. pBluescript II KS+ vector (Stratagene, La Jolla, CA) was digested with the same restriction enzymes and ligated to the HNK-1ST fragment to give plasmid pBSII KS+-HNK-1ST. Site-directed mutagenesis was performed on this plasmid using a ChameleonTM double-stranded, site-directed mutagenesis kit (Stratagene) (29, 30). Phosphorylated oligonucleotides covering conservative or nonconservative amino acid replacement were synthesized and purified by denaturing polyacrylamide gel electrophoresis before use. Following site-directed mutagenesis of the required amino acid residue on pBSII KS+-HNK-1ST, a 0.53-kilobase pair fragment flanked by Bsu36I and BamHI and containing the specific codon replacement was sequenced to confirm the correct sequence. This 0.53-kilobase pair DNA fragment was released by digestion with Bsu36I and BamHI and was used to replace the corresponding sequence in the wild type DNA sequence in pcDNAI-A·HNK-1ST.
Production of HNK-1ST-- The plasmid pcDNAI-A·HNK-1ST containing the appropriate mutation was transfected into COS-1 cells using LipofectAMINE® Plus reagents (Life Technologies, Inc.) (18). Following 24 h of growth in a complete medium at 37 °C, the medium was replaced with serum-free OptiMEM solution (Life Technologies, Inc.). After a 48-h incubation at 37 °C, the culture medium containing the fusion protein was collected and filtered through a 0.22-µm membrane. The fusion protein was isolated by adsorption to IgG-Sepharose 6FF beads (Amersham Pharmacia Biotech) (31). After washing, the fusion protein-containing beads were resuspended in 100 mM Tris-HCl buffer, pH 7, at 50% suspension volume. This was used as the enzyme source. Appropriate controls (both wild type and mock-transfected reactions) were performed.
HNK-1ST and the mutant enzymes released were separated by SDS-polyacrylamide gel electrophoresis, and their amount was estimated by Western blot analysis using peroxidase-conjugated rabbit anti-goat IgG antibodies (30) purchased from ICN.
Sulfotransferase Assay--
The acceptor,
GlcA
1
3Gal
1
4GlcNAc
1
octyl was synthesized as
described previously (18, 32). Appropriate amounts of the acceptor and
the donor, adenosine 3'-phosphate 5'-phospho[35S]sulfate,
were mixed and dried down under vacuum. The material was then
redissolved in 40 µl of a solution containing 100 mM Tris-HCl, pH 7, 0.1% Triton X-100, 2.5 mM ATP, and 10 mM MnCl2. To this, 10 µl of the 50%
suspension of the enzyme solution, prepared as described above, was
added. The mixture was incubated at 37 °C for 1 h with
constant, gentle agitation. The reaction was stopped by adding 450 µl
of 250 mM ammonium formate, pH 4. The labeled products were
applied to C18 reverse-phase chromatography columns (Alltech) and
eluted with 70% methanol. A portion of the eluted product was
subjected to scintillation counting. Relative activity was measured and
standardized against the values obtained for the wild type after
subtraction of the background activity for the mock samples. The
Km for wild type HNK-1ST and mutant enzymes
exhibiting detectable enzymatic activity was determined using a
Lineweaver-Burk plot at various concentrations of the acceptor (2.5 µM to 2000 µM) and donor (1 µM to 2000 µM).
Binding of HNK-1ST to Immobilized Adenosine Diphosphate-- Following the transfection protocol as described above, the culture medium (20 ml) from the transfected cells was concentrated approximately 20-fold using Centriprep-10 spin columns (Amicon). The concentrated medium containing the enzyme (100 µl) was mixed with 900 µl of 100 mM Tris-HCl, pH 7, containing 5 mM MnCl2, applied to 1 ml of adenosine-3', 5'-diphosphate-agarose (Sigma), washed, and equilibrated in 100 mM Tris-HCl, pH 7, as described previously (33). After washing the beads with 4 ml of 100 mM Tris-HCl, pH 7, the bound enzyme was eluted with a NaCl linear gradient (0-500 mM) with increasing NaCl at 25 mM/ml. The eluted sample (200 µl) from each fraction (1 ml) was coated onto a 96-well microtiter plate and incubated at 4 °C overnight. After blocking the wells with 1% bovine serum albumin for 2 h at room temperature, a 1:1000 dilution of rabbit anti-goat IgG-horseradish peroxidase conjugate (200 µl) was added and incubated for 1 h at room temperature. Following three washes with Tris-buffered saline containing 0.2% Tween 80, 200 µl of a chromogenic substrate (0.1 mg of o-phenylenediamine/ml of 50 mM phosphate-citrate buffer, pH 5, containing 0.003% H2O2) was added to each well. After incubation at room temperature to allow sufficient color to develop, the reaction was stopped with 50 µl of 2 N sulfuric acid. The absorbance at 490 nm was read using a microtiter plate reader (Bio-Rad).
Modeling of HNK-1ST Active Sites--
The active site of HNK-1ST
was modeled using the estrogen sulfotransferase and the HSNST
coordinates (27, 28). The program "O" was utilized to make the
changes to the sequence using the program Molscript (34).
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RESULTS |
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Isolation of Mutant HNK-1ST and Its Assay-- Previously we have shown that HNK-1ST can be expressed as a soluble protein fused with protein A (18). Such a soluble chimeric protein has a significant activity and is judged to reflect approximately the catalytic activity of the enzyme present in Golgi (18). In the present study, we took advantage of this property, and a soluble chimeric HNK-1ST was used throughout the studies.
As shown in Fig. 2, the wild type enzyme
exhibits an activity profile typical for a transferase, and substrate
inhibition or acceptor inhibition was not observed. We then
individually mutated amino acid residues Lys128 in the
5'-PSB site and Arg189, Asp190,
Pro191, and Ser197 in the 3'-PB motif (see Fig.
1 also). After these mutated enzymes and the wild type enzyme were
expressed, the expression of each enzyme was estimated by Western blot
analysis using rabbit IgG as a probe because the protein A portion of
the chimeric protein can bind to rabbit IgG (Fig.
3). After adjusting the amount of the
enzyme, the catalytic activity of each enzyme preparation was assayed
using standard incubation conditions, as described under
"Experimental Procedures."
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As shown in Fig. 4, almost no activity
remained when Lys128, Arg189,
Asp190, Pro191, and Ser197 were
individually mutated to an alanine residue. In contrast, the
conservative mutation of K128R and D190E maintained 15 and 60% of the
activity compared with that of wild type. Mutation of R189K or P191G,
on the other hand, was not tolerated, and the mutant enzymes completely
lost the activity.
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Amino Acid Mutations Affect Binding to Donor--
To determine how
these mutations cause a change in the binding to PAPS, the wild type
HNK-1ST and each mutated enzyme were individually applied to a column
of PAP-agarose, and the bound enzyme was eluted by a linear gradient of
NaCl. The eluted enzymes were immunochemically detected using rabbit
IgG-peroxidase conjugate. As shown in Fig.
5A, the wild type enzyme bound
to the column in a biphasic way, and the majority of the bound enzyme
was eluted after the gradient elution of NaCl started. Similar results
were reported in a flavonol sulfotransferase (33). In contrast, K128A mutant barely bound to PAP-agarose, whereas the K128R mutant enzyme bound to the same column as much as the wild type enzyme.
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In a similar assay, the R189K, R189A, S197T, and S197A mutant enzymes did not bind to the PAP-agarose column (Fig. 5, B and D), whereas D190E bound well to the same column (Fig. 5C). These results demonstrated that K128R and D190E mutations did not significantly affect the binding to PAPS, whereas the conservative mutation of R189K and S197T dramatically reduced the binding to PAPS.
Mutation on Lys128 and Asp190 Affects
Binding to Acceptor Substrate--
The above results indicate that the
conservative mutation at Lys128 and Asp190 did
not significantly affect the binding to PAPS but reduced the catalytic
activity. To determine whether such a decrease in activity was due to
impaired binding to the acceptor, the enzyme activity was determined
using varying concentrations of donor substrate PAPS or the acceptor,
GlcA
1
3Gal
1
4GlcNAc
1
octyl.
The results shown in Fig. 2, A and B, were
replotted for the Lineweaver-Burk plot as seen in Fig. 2, C
and D. The Km for the donor substrate
PAPS is almost the same between the wild type (66 µM) and
the D190E mutant (70 µM) and is even better for the K128R
mutant (12 µM) than for the wild type enzyme. In
contrast, the Km value for the acceptor was 316 µM for the wild type enzyme and increased 5.6-fold for
K128R mutant (1776 µM) and 2.4-fold for D190E mutant (744 µM), respectively. These results suggest that
Lys128 and Asp190 may be involved in the
binding to the acceptor or very close to the acceptor binding site (see
also under "Discussion").
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DISCUSSION |
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Comparison of sulfotransferases cloned to date revealed that there are two amino acid sequences that are highly conserved among different sulfotransferases (Fig. 1). In the present study, we first demonstrated that mutations of Arg189, Pro191, and Ser197 inactivate the enzyme, indicating that these amino acid residues are important for either binding to the donor PAPS or maintaining the conformation of the enzyme for transfer of the sulfate group to the acceptor molecule. All mutations of these amino acids, including conservative replacement, resulted in the loss of PAPS binding in these mutant enzymes (Fig. 5). These results confirm the previous conclusions that 5'-phosphosulfate and 3'-phosphate binding sites are critical for the binding to PAPS (25-28).
More importantly, the present study also revealed that the mutations at
Lys128 and Asp190 can be tolerated well for the
binding to PAPS, and such a binding became even better after mutation
of Lys128 to Arg. The excellent binding of these mutant
enzymes to PAPS can be seen in both affinity chromatography using
PAP-agarose (Fig. 4) and in kinetic studies (Fig. 2). In contrast, the
same kinetic studies showed that these mutant have lower affinity to the acceptor, GlcA
1
3Gal
1
4GlcNAc
1
octyl (Fig.
2). These results suggest that these two amino acids may be more
intimately involved in the binding of an acceptor than in the binding
of a donor substrate.
No studies are available on the mutation of Asn131 in the estrogen sulfotransferase, which corresponds to Asp190 in HNK-1ST, although crystal structural studies showed that Arg130, which is next to Asn131, interacts with the 3'-phosphate group of PAP (27). Our mutation experiments demonstrated that the mutation of Arg189 to either Lys or Ala resulted in the complete loss of the enzymatic activity (Fig. 2). The loss of the activity was accompanied by the loss in the binding to PAP (Fig. 5).
The present study also demonstrated that mutation of Asp190
to Glu did not inactivate the enzyme, whereas mutation of
Arg189 to Lys completely inactivated the enzyme. These
results may suggest that Arg189 is critical in the binding
to a 3'-phosphate group of PAPS, whereas Asp190 is involved
in the binding to an acceptor. However, these results need to be
evaluated in relation to the three-dimensional structure of HNK-1ST.
The crystal structures of the estrogen sulfotransferase and HSNST
demonstrated that the structure of the 5'-PSB and 3'-PB sites is well
conserved in these two different enzymes (27, 28). These results,
together with the results obtained in the present study, allow us to
propose a possible three-dimensional structural model of HNK-1ST, as
shown in Fig. 6.
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Concerning the 3'-PB site, Arg189 and Ser197
can interact directly with the 3'-phosphate group of PAP in the model,
thus, mutations of Arg189 and Ser197 can
profoundly alter PAPS binding, affecting HNK-1ST activity. Asp190 and Pro191 are not in a position to
interact directly with the PAP molecule. They reside in a transition of
secondary structure from a
-sheet to an
-helix, making for a very
tight turn of about 90° (Fig. 6). Through its interactions with
backbone N atoms of residues 192 and 193 in the following
-helix,
Asp190 may help to stabilize this turn. Thus, mutation of
Asp190 may alter the core structure of the PAP binding
site, affecting indirectly HNK-1ST activity. Pro191 may
also be involved in the stabilization because its mutation abolished
HNK-1ST activity. These residues (Arg189,
Ser197, Asp190, and Pro191) are
located more than 20 Å from the nearest atom in the glucuronic acid
molecule and the PAP molecule than the glucuronic acid molecule. They
are not in a position to interact directly with the acceptor molecule
for HNK-1ST. It would be more of an indirect effect, if any mutations
of these residues affected the binding of the acceptor. The R(D/N)P
sequence may thus be conserved to maintain the structure of the PAPS
binding site.
Lys128 (or Arg in some sulfotransferases) is conserved in the 5'-PSB site of all known sulfotransferases (Fig. 1). It can form hydrogen bonds with the 5'-phosphate group of PAP and is involved in catalysis. Mutations of this residue inactivated HNK-1ST, except that K128R still maintains some of the original activity. Lys128 is 9 Å away from the 3-hydroxyl group of the glucuronic acid molecule and is unlikely to interact directly with the acceptor of HNK-1ST. In the mouse estrogen sulfotransferase, the K48R mutation in the 5'-PSB site did not change Km of the enzyme for either estrogen or PAP (35). In contrast, the K128R mutation of HNK-1ST increased Km toward glucuronic acid in the acceptor molecule more than 5-fold. In the model, the end of the side chain of Arg (at the position of Lys128) can be moved to within 3.2 Å of the 3-hydroxyl group of the glucuronic acid molecule (Fig. 6). A bulkier nonplaner substrate of HNK-1ST may actually come closer to the position of the mutated Arg. Thus the K128R mutation could have an effect on the binding of the acceptor in HNK-1ST.
In the mouse estrogen sulfotransferase, Lys48 corresponds to Lys128 in HNK-1ST. In contrast to the results obtained in the present study, the mutation of Lys48 to Arg did not change the Km toward estrogen or PAPS in a previous study (34). The importance of Lys48 was, however, demonstrated because its mutation to methionine completely inactivated the enzyme in the same study. These results indicate that Lys128 in the HNK-1ST is closer to an acceptor than Lys48 in the estrogen sulfotransferase. This difference is probably due to the difference in acceptor structures (Fig. 6).
The present study demonstrated that HNK-1ST and estrogen
sulfotransferase share many of the structural requirements for the enzymatic activity. The study, on the other hand, also indicates that
acceptor binding sites of different enzymes are distinct from one
another. Further studies on the three-dimensional structure of HNK-1ST
will be of significance to determine how the acceptor is recognized by
the enzyme and provide critical information on the three-dimensional
structure of the acceptor oligosaccharide.
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ACKNOWLEDGEMENTS |
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We thank Susan Fanno and Julie Howe for organizing the manuscript.
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FOOTNOTES |
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*
This work was supported by Grants RO1 CA33895 and PO1
CA71932 awarded by the NCI, National Institutes of Health. This article is dedicated to Professor Pierre Sina
on the occasion of his 62nd birthday.The costs of publication of this
article were defrayed in part by the
payment of page charges. The article
must therefore be hereby marked
"advertisement" in
accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
§ To whom correspondence should be addressed: The Burnham Institute, 10901 North Torrey Pines Rd., La Jolla, CA 92037. Tel.: 858-646-3144; Fax: 858-646-3193; E-mail: minoru@burnham-inst.org.
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ABBREVIATIONS |
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The abbreviations used are: 5'-PSB, 5'-phosphosulfate binding; 3'-PB, 3'-phosphate binding; HNK-1ST, HNK-1 sulfotransferase; PAPS, adenosine 3'-phosphate 5'-phosphosulfate; PAP, adenosine 3',5'-diphosphate; HSNST, human heparan sulfate N-deacetylase/sulfotransferase.
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