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J Biol Chem, Vol. 274, Issue 45, 32396-32401, November 5, 1999
From the Department of Plant Biology and Center for the Study of
Early Events in Photosynthesis, Arizona State University, Tempe,
Arizona 85287-1601
Cytochrome c maturation involves heme
transport and covalent attachment of heme to the apoprotein. The 5' end
of the ccsB gene, which is involved in the maturation
process and resembles the ccs1 gene from
Chlamydomonas reinhardtii, was replaced by a
chloramphenicol resistance cartridge in the cyanobacterium
Synechocystis sp. PCC 6803. The resulting In c-type cytochromes, the heme group is covalently
bound to the conserved CXXCH motif of the apoprotein in a
process called cytochrome
(cyt)1 c
maturation (1, 2). This posttranslational process involves heme and
apocytochrome transport from the cytoplasm into the periplasm in
bacteria, into the intermembrane space in mitochondria, or into the
thylakoid lumen in chloroplasts and cyanobacteria, followed by heme
attachment to apocytochrome. Remarkably, three separate pathways of
maturation of c-type cytochromes evolved among various organisms (1-5).
For Saccharomyces cerevisiae and animal mitochondria only
one type of protein, the cyt c lyase, has been shown to be
essential for the heme attachment step (6, 7). The lyase was shown to
interact directly with both heme (8) and apocytochrome (9), and
therefore it is assumed to function in the catalysis of thioether bond
formation between heme and cysteine residues of apocytochrome.
In contrast to yeast mitochondria, mutational analysis of Gram-negative
bacteria implicated about ten genes in assembly of both soluble and
membrane-associated c-type cytochromes. In Escherichia coli, eight of the genes required for cyt c maturation
are organized in an operon (10). The gene products involved can be
divided into several subprocesses: (a) heme delivery,
(b) transfer of reducing power from the cytoplasm to the
periplasm, and (c) proper heme attachment. Bacterial
c-type apocytochromes are normally synthesized with an
N-terminal signal sequence that is recognized by the Sec system for
protein translocation across the membrane and by the signal peptidase
for processing (11).
The cytochrome c biosynthesis pathway in chloroplasts,
cyanobacteria and Gram-positive bacteria is more obscure (5, 12, 13).
Only three genes have been identified thus far to be required for cyt
c maturation. Functionally, the pathways in chloroplasts and
Gram-negative systems are very similar and cyanobacterial cytochromes
can be functionally assembled in E. coli (14). However, obvious sequence similarities between the components of the two systems
are limited to one putative cytochrome binding site (15) and a protein
involved in transfer of reducing power across the membrane (16). In
Chlamydomonas reinhardtii, the chloroplast-encoded ccsA gene (15) and a nuclear-encoded ccs1 gene
(17) were identified as indispensable for heme attachment. The CcsA and
Ccs1 proteins were suggested to function together in a complex, as
inactivation of either of the two genes leads to deficiency in both
proteins (1, 5). In some systems heme attachment can proceed
spontaneously (18-20). This implies that components of the cyt
c maturation pathways may not be directly involved in the
formation of thioether bonds but rather in bringing together both
substrates in the right conformation and in the correct redox state so
that heme attachment can occur.
This paper describes characterization of a Synechocystis sp.
PCC 6803 mutant carrying a 5' deletion of the open reading frame slr2087 (nomenclature according to CyanoBase), which is
similar to ccs1 and which we have named ccsB.
Moreover, an attempt is reported to inactivate a much larger portion of
slr2087 as well as sll1513, coding for CcsA.
Growth Conditions--
Wild type and mutants of
Synechocystis sp. PCC 6803 were grown in liquid BG-11 medium
(21) at 30 °C at 40 µE/m2·s on a rotary shaker.
Strains were grown with 5 mM glucose unless photoautotrophic conditions are indicated. For anaerobic growth, the
strains were grown in a 1% CO2, 99% N2 atmosphere.
Oxygen Evolution--
Oxygen evolution was measured as described
earlier (22) using a Clark-type electrode in the presence of 1 mM K3Fe(CN)6 and 0.1 mM
dimethyl-p-benzoquinone (DMBQ) for PS II activity, or 10 mM NaHCO3 for whole chain electron transport.
Fluorescence Measurements--
Chlorophyll a
fluorescence induction and decay were detected with a Walz
pulse-amplitude-modulation fluorometer and recorded using the program
FIP (QA Data, Turku, Finland). Actinic illumination came
from a pulse-amplitude-modulation 102 L LED lamp. For fluorescence induction 1 µM
2,5-dibromo-3-methyl-6-isopropyl-p-benzoquinone (DBMIB) was
added where indicated. Fluorescence decay was measured after 3 s
of actinic illumination.
Preparation of Cell Extracts and Thylakoid Membranes and
SDS-Polyacrylamide Gel Electrophoresis--
Cells in late exponential
phase were pelleted and were resuspended in thylakoid buffer (1/100 of
the original culture volume) containing 50 mM MES/NaOH, pH
6.0, 5 mM MgCl2, 5 mM
CaCl2, and 10% glycerol (v/v). Cell suspensions (0.7 ml)
were transferred to 2-ml microcentrifuge tubes, mixed with an equal
volume of glass beads (90-µm diameter), and kept on ice. The cells
were broken in a MiniBeadBeater. The homogenate was centrifuged in a
microcentrifuge at 14,000 rpm for 10 min at 4 °C. The supernatant
represents the soluble cell fraction; the pelleted thylakoids were
resuspended in the original volume of thylakoid buffer.
Proteins were separated by SDS-polyacrylamide gel electrophoresis
without urea. A 15% polyacrylamide gel (a 15-20% gradient gel for
detection of cyt c553) was used for separation;
the stacking gel was 5.5% polyacrylamide. Samples were solubilized in
sample buffer at room temperature for 15 min before loading on the gel. A total of 50 µg of protein was loaded per lane.
Western Blotting and Heme Staining--
After electrophoresis,
proteins were transferred to polyvinylidene fluoride membrane (MSI,
Westboro, MA) using the Bio-Rad Trans-Blot system. Blotted membranes
were subjected to immunoblot analysis using antibodies against cyt
f, cyt b6, Rieske, and subunit IV
(1:1,000 dilution). Bound primary antibody was detected with an
alkaline phosphatase-conjugated secondary antibody. Antibodies were
gifts from A. Barkan (University of Oregon, Eugene, OR) (raised against
maize Rieske and cyt f) and R. Malkin (University of
California, Berkeley, CA) (raised against spinach cyt f, cyt
b6, and subunit IV).
Gels were stained for cytochromes using the heme staining procedure
with 3,3',5,5'-tetramethylbenzidine and H2O2
(23). Alternatively, cytochromes were identified on membranes after
transfer by a heme staining procedure using enhanced chemiluminescence
(17).
Gene Nomenclature--
In this paper a unified nomenclature of
ccs (c-type cytochrome synthesis) genes will be
used that is appropriate for organisms using the
chloroplast/cyanobacterial pathway of cyt c maturation. A
ccm (cyt c maturation) nomenclature has been
proposed for organisms using the pathway of Gram-negative bacteria
(10). As shown in Table I the current
nomenclature of genes involved in cyt c maturation in
chloroplast, cyanobacteria, and Gram-positive bacteria is very different for different organisms. In this paper, ccsA will
refer to the cyanobacterial homologue of the ccsA gene of
C. reinhardtii; ccsB will denote the
Synechocystis sp. PCC 6803 homologue of C. reinhardtii
Ccs1, whose product is thought to form a complex with CcsA; last,
ccsC will denote the two putative Synechocystis
sp. PCC 6803 genes homologous to Bacillus subtilis ccdA,
which codes for the protein suggested to be involved in the transfer of
reducing power across the membrane.
Generation of the ccsB Mutants--
The Synechocystis
sp. PCC 6803 ccsB (slr2087) gene was identified
by its similarity to Ccs1 from C. reinhardtii
(38% identity at the protein sequence level). Two deletion mutants
were generated. In the first mutant, a chloramphenicol resistance
marker (1.5 kilobases) from pACYC184 was introduced around the
translation start site of ccsB, replacing the region between
the NaeI site 53-bp upstream from the translation start site
and the BglII site 72-bp downstream of the translation start
site of the 1,374-bp-long ccsB gene. This mutant will be
referred as
When exposed to oxygen, the
Inactivation of the ccsB homologue in C. reinhardtii led to a nonphotosynthetic phenotype and to a cyt
b6f deficiency (17). Therefore, it
was important to determine whether the
A similar conclusion was drawn from chlorophyll fluorescence induction
and decay measurements in the Processing of cyt f in the
Surprisingly, in the mutant, a band with decreased mobility was
recognized by the cyt f antibody; we assign this band to
unprocessed pre-apocyt f. The observed 2-3-kDa difference
is consistent with the upper band being the unprocessed protein. This
difference in electrophoretic mobility is similar to that between
C. reinhardtii pre-apocyt f and apocyt
f (24). Even though the upper band accumulated to high
levels in thylakoid membranes of the
The other cyt b6f complex subunits,
including cyt b6, accumulated to about 20% of
the amount in wild type (Fig. 4; note
that for wild type, 5-fold less thylakoids were loaded than for the
As the Plastocyanin Is Indispensable in the Supplementation of the Pseudorevertants--
Second-site mutants (pseudorevertants) were
selected in which the Inactivation of ccsA--
The Synechocystis sp. PCC
6803 ccsA (sll1513) gene was interrupted by the
kanamycin resistance marker from the pUC4K at the BamHI site
at position 813 of the coding region of ccsA, yielding the
same construct as has been used previously (12). In agreement with
previous data (12), this mutant could not be segregated. Unlike for the
Accumulation of Cytochromes--
We have generated a
Synechocystis sp. PCC 6803 mutant lacking the part of the
ccsB gene coding for the first 24 amino acid residues of the
corresponding protein. The Stability of Pre-apocyt f--
The observation that unprocessed
pre-apocyt f accumulated to high levels in the thylakoid
membrane of the The Role of CcsB--
Important insight regarding the function of
the CcsB protein and the phenotype of the
Interestingly, the
A CcsA-CcsB complex is necesssary for cyt c maturation in
chloroplasts and cyanobacteria. CcsA, which has a putative heme binding
site on the luminal side of the thylakoid membrane (15, 32), may
function as a heme transporter/coordinator. We suggest that CcsB serves
as an apocytochrome chaperone, which binds pre-apocyt f and
facilitates its processing by signal peptidase and heme attachment by
CcsA. Both processing and heme attachment may take place in the
CcsA-CcsB complex; both processes must be tightly coordinated as the
N-terminal amino acid of the processed cyt f serves as a
heme ligand. We propose that the CcsA-CcsB complex is the site of heme
attachment, with CcsB binding the apoprotein and with CcsA binding a
heme and facilitating its linkage to apocytochrome.
We thank Dr. Alice Barkan, University of
Oregon, and Dr. Richard Malkin, University of California, Berkeley for
providing us with the antibodies used in this study.
*
This research was funded by Grant DE-FG03-95ER20180 from the
United States Department of Energy. Financial support by the NASA
Astrobiology program during the final stage of this work is gratefully
acknowledged.The costs of publication of this
article were defrayed in part by the
payment of page charges. The article must therefore be hereby marked
"advertisement" in
accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
The abbreviations used are:
cyt, cytochrome;
MES, 4-morpholineethanesulfonic acid;
DMBQ, dimethyl-p-benzoquinone;
bp, base pair(s);
kbp, kilobase pair(s);
PCR, polymerase chain reaction;
DBMIB, 2,5-dibromo-3-methyl-6-isopropyl-p-benzoquinone;
PSII, photosystem II.
Accumulation of Pre-apocytochrome f in a
Synechocystis sp. PCC 6803 Mutant Impaired in
Cytochrome c Maturation*
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ABSTRACT
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
(M1-A24)
mutant lacking the first 24 ccsB codons grew only under
anaerobic conditions. The mutant retained about 20% of the wild-type
amount of processed cytochrome f with heme attached,
apparently assembled in a functional cytochrome b6f complex. Moreover, the mutant
accumulated unprocessed apocytochrome f in its membrane
fraction. A pseudorevertant was isolated that regained the ability to
grow under aerobic conditions. The locus of the second-site mutation
was mapped to ccsB, and the mutation resulted in the
formation of a new potential start codon in the intergenic region,
between the chloramphenicol resistance marker and ccsB, in
frame with the remaining part of ccsB. In this
pseudorevertant the amount of holocyt f increased, whereas
that of unprocessed apocytochrome f decreased. We suggest
that the original deletion mutant
(M1-A24) expresses an N-terminally
truncated version of the protein. The stable accumulation of
unprocessed apocytochrome f in membranes of the
(M1-A24)
mutant may be explained by its association with truncated and only
partially functional CcsB protein resulting in protection from
degradation. Our attempt to delete the first 244 codons of
ccsB in Synechocystis sp. PCC 6803 was not
successful, suggesting that this would lead to a lack of functional
cytochrome b6f complex. The results
suggest that the CcsB protein is an apocytochrome chaperone, which
together with CcsA may constitute part of cytochrome c lyase.
![]()
INTRODUCTION
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
![]()
EXPERIMENTAL PROCEDURES
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
![]()
RESULTS
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
Genes coding for components implicated in the cytochrome c maturation
in cyanobacteria (Synechocystis sp. PCC 6803), chloroplasts (from C. reinhardtii and Porphyra purpurea), and Gram-positive bacteria
(Mycobacterium leprae and B. subtilis)
(M1-A24), the name reflecting the amino acids that have
been deleted. In the second mutant,
(M1-I244), the deleted region
was between the BclI sites 82-bp upstream and 732-bp
downstream of the translation start site of the ccsB gene.
Interestingly, the phenotypes of both mutants were different. The
(M1-A24) transformant did not segregate its wild type and mutant
genome copies when grown under ambient aerobic conditions (data not
shown), but segregation was obtained easily under anaerobic conditions.
Synechocystis sp. PCC 6803 contains multiple genome copies
per cell, and lack of segregation of wild-type and mutant gene copies
in the presence of high concentrations of a selectable marker usually
indicates that the presence of the particular gene that is attempted to
be deleted is indispensable for cell survival. Segregation of the
(M1-A24) mutant was checked by PCR (Fig.
1). However, we were unable to segregate
the
(M1-I244) mutant in both aerobic and anaerobic conditions (data
not shown). However, the partially segregated
(M1-I244) mutant also
appeared to be oxygen sensitive. As the
(M1-I244) mutant did not
segregate, the corresponding transformant was not characterized
further.

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Fig. 1.
PCR analysis of the ccsB
locus in the wild type and in the
(M1-A24) mutant. The
(M1-A24) mutant was
generated by replacement of the 125-bp NaeI-BglII
fragment around the translation start of the ccsB gene by a
chloramphenicol resistance marker (1.5 kbp). PCR primers were chosen to
lead to a 1.4-kbp fragment in the wild type and to a 2.8-kbp fragment
in the segregated
(M1-A24) mutant.
(M1-A24) Mutant Characterization--
Consistent with the
conditions necessary for segregation, the
(M1-A24) mutant depended
on anaerobic conditions for growth. As shown in Table
II, under anaerobic conditions the
(M1-A24) mutant grew photoautotrophically at a rate about two-thirds
that of wild type. Interestingly, the
(M1-A24) mutant grew in air if
PS II was deleted or inhibited by atrazine (Table II).
Aerobic and anaerobic growth of wild type and the
(M1-A24) mutant in
the presence or absence of PS II
(M1-A24) mutant cultures continued to
grow for about 20 h, followed by an inhibition of further growth
(data not shown). The growth rate of wild-type cells was similar in
both aerobic and anaerobic conditions (Table II). However after several
days of exposure to oxygen, the mutant culture started to grow again
when it was returned to anaerobic conditions. Therefore, oxygen did not
kill the
(M1-A24) mutant strain, but it prevented its growth.
(M1-A24) mutant of
Synechocystis sp. PCC 6803 is also impaired in
photosynthetic electron transport through the cyt
b6f complex. For this reason, oxygen
evolution rates of the
(M1-A24) mutant and wild type were measured,
and the rate of electron transport through PS II to the artificial
electron acceptor DMBQ (which can oxidize the plastoquinone pool) was
compared with that of whole-chain electron transport to CO2
(Table III). The two rates were similar
for wild type, but the rate of whole-chain electron transport in the
(M1-A24) mutant was about 5-fold lower than electron transfer
involving only PS II. This indicates that photosynthetic electron
transport was blocked beyond PS II and is consistent with an inhibition
at the level of the cyt b6f
complex.
Photosynthetic electron transport in wild type and the
(M1-A24)
mutant
(M1-A24) mutant. Chlorophyll fluorescence increases with reduction of QA in PS II, and
reduced QA is oxidized by the plastoquinone pool. If
photosynthetic electron transport is blocked at or beyond the cyt
b6f complex, oxidation of the
plastoquinone pool would be expected to be slower and consequently QA
oxidation after illumination should be
slower as well. Indeed, after illumination variable fluorescence in the
(M1-A24) mutant decayed with a half-time about 4-fold slower than in
wild type, suggestive of slower electron flow out of the plastoquinone
pool (Fig. 2A). Fluorescence
induction was faster in the mutant than in wild type, indicative of a
more rapid net reduction of the plastoquinone pool in the mutant upon
illumination (Fig. 2, B and C). In the presence
of 1 µM DBMIB (a cyt
b6f complex inhibitor), the induction
curve of the wild type was very similar to that of the mutant with or
without DBMIB, whereas in the mutant, DBMIB barely affected the
fluorescence induction curve (Fig. 2, B and C).
These data are fully consistent with inhibition at the level of the cyt
b6f complex in the
(M1-A24)
mutant.

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Fig. 2.
Chlorophyll fluorescence decay and induction
in wild type and the
(M1-A24) mutant.
Panel A, decay kinetics of variable fluorescence in intact
cells after continuous illumination. Actinic illumination was turned
off after a 3 s illumination (indicated by an arrow).
Panel B, fluoresence induction of dark adapted cells in the
presence or absence of 1 µM DBMIB. Panel C,
induction as in panel B but on a shorter time scale. The
scale on the y axis is in volts; in panels B and
C, the zero levels were offset for better comparison; wild
type DBMIB was actually at 0 V, wild type + DBMIB was offset by +0.15
V,
(M1-A24)-DBMIB by +0.6 V, and
(M1-A24) + DBMIB by +0.75
V.
(M1-A24) Mutant--
To determine
the accumulation of c-type cytochromes and the cyt
b6f complex in the
(M1-A24) mutant
more directly, the amount of cyt b6f
complex subunits in thylakoid membranes was monitored using Western
blotting and heme staining. In cyanobacteria, several c-type
cytochromes are localized on the luminal side of the thylakoid membrane, including cyt f, cyt c553,
which is a soluble electron carrier between cyt
b6f complex and PS I, and cyt
c550, a PS II luminal protein. Unlike in
C. reinhardtii, in cyanobacteria the cyt
b6f complex appears to be
indispensable, possibly because of its role in respiration, making a
cyanobacterial mutant completely deficient in this complex unlikely to
survive. The
(M1-A24) mutant was found to have significantly
decreased amounts of cyt f, cyt b6,
and cyt c550 in its thylakoids (Fig.
3).

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Fig. 3.
Accumulation of c-type
cytochromes in wild type and the
(M1-A24)
mutant. Thylakoids membranes were isolated, and 50 µg of protein
was loaded on a polyacrylamide gel. Proteins were identified by heme
staining (A) or by cross-reaction with a cyt f
antibody (B).
(M1-A24) mutant (Fig. 3), this
band was not visible upon heme staining. Therefore, this band does not
covalently bind heme. However, the lower band in the mutant
corresponding to processed cyt f (about 20% of the wild-type amount) stained with heme at an intensity corresponding to
the amount of processed cyt f in the membrane (Fig. 3). This is consistent with the 5-fold reduction in linear electron flow (Table
III) and suggests that most or all of the processed cyt f in
the mutant carries covalently attached heme.
(M1-A24) mutant). In the range of protein concentrations used the
immunoreaction observed is approximately proportional to the amount of
antigen (not shown). Therefore, the amount of cyt
b6, Rieske, and subunit IV polypeptides is
proportional to the amount of processed holocyt f and the
amount of functional cyt b6f complex. This implies that the unprocessed pre-apocyt f is not part
of the cyt b6f complex (Fig. 3).

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Fig. 4.
Levels of c-type cytochromes
and subunits of the b6f
complex upon aerobic incubation. Thylakoid membranes were
isolated from the wild type and the
(M1-A24) mutant that had been
grown anaerobically and then were transferred to ambient air for 0-70
h as indicated. 50 µg of protein/lane was loaded on a polyacrylamide
gel (10 µg for wild type). Proteins were identified
immunologically.
(M1-A24) mutant ceased to grow in ambient air conditions, we
investigated whether the accumulation of the cyt
b6f complex changed upon exposure of
the mutant strain to air. The amounts of the cyt
b6f subunits remained stable for the
first 40 h of the experiment (Fig. 4), long after the cells had
ceased to grow. Protein degradation was obvious only after 70 h in
aerobic conditions (Fig. 4).
(M1-A24) Mutant--
As
the
(M1-A24) mutant accumulated some processed cyt f and
cyt c550 with heme bound, it was interesting to
determine whether cyt c553 is properly
synthesized as well. Cyt c553, together with plastocyanin, shuttles electrons from the cyt
b6f complex to PS I in
Synechocystis sp. PCC 6803. Fig. 5 indicates that in our growth conditions the level of holocyt c553 in
wild type is very low. However, upon deletion of the plastocyanin gene
(petE) the cyt c553 level increased
dramatically. Interestingly, after transformation of the
(M1-A24)
mutant with a petE deletion construct (25) the resulting
petE deletion transformants did not segregate and no holocyt
c553 was apparent in the partially segregated
mutant (Fig. 5). This suggests that,
unlike holocyt f (Fig. 3) and cyt c550, the
(M1-A24) mutant is unable to make
holocyt c553.

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Fig. 5.
Accumulation of soluble
c-type cytochromes in wild type and various
mutants. (petE
) indicates that in these
strains transformants with a deletion at the petE locus did not
segregate. 50 µg of proteins from the soluble fraction was loaded and
cytochromes were identified by heme staining using enhanced
chemiluminescence.
(M1-A24) Mutant with Heme and/or
Reductant--
Accumulation of the unprocessed pre-apocyt f
that lacked covalently bound heme raised the possibility that the
(M1-A24) mutant may be deficient in heme transport and reduction.
This would be similar to the situation in yeast mitochondria, where
heme-deficient mutants accumulate pre-apocyt
c1 in vivo (26) and where attachment of the reduced heme was necessary for processing of the cyt
c1 in vitro (27, 28). To determine
whether the
(M1-A24) phenotype could be overcome in part by
supplementation of extra heme and/or reductant,
(M1-A24) cells were
grown on plates with 100 µM hemin and/or in the presence
or absence of reductants (up to 1 mM dithiothreitol, L-cysteine, or dithionite). None of these additions led to
improved photosynthetic performance, ability to grow at ambient oxygen levels, and changes in accumulation of unprocessed or processed cyt
f. This suggests that CcsB is not involved in heme transport and/or reduction.
(M1-A24) mutant phenotype was suppressed at
least partially. Several pseudorevertants that were able to grow in air
were selected. During the initial screening, most of the
pseudorevertants were found to be deficient in PS II activity, which is
consistent with the data that were presented in Table II. However, one
pseudorevertant was photoautotrophic with about 50% of the wild type
growth rate under aerobic conditions and with 70% of the whole chain
electron transport rate of wild type (data not shown). This
pseudorevertant showed an increased accumulation of holocyt
f (Fig. 6A) and a decreased but still detectable level of pre-apocyt f (Fig.
6B). Chromosomal DNA from this pseudorevertant complemented
the original
(M1-A24) strain, using growth at ambient oxygen levels
as a selection criterion. Functional complementation was used to
localize the second-site mutation. The complementing PCR fragment
contained a single point mutation in the noncoding region of the
chloramphenicol resistance cassette in between the resistance marker
and the remainder of the ccsB gene (Fig.
7A). The mutation (T to G) led
to formation of a new putative start codon, CUG, for ccsB,
with a Shine-Dalgarno-like sequence upstream. Note that in prokaryotes
not only AUG and GUG but also UUG and to a lesser extent CUG have been
reported to be able to function as start codons (29). Even though the
first part of this modified gene has a random sequence, translation of
the modified ccsB gene using the newly generated start codon in the pseudorevertant is expected to lead to a protein of similar length as the wild type copy (Fig. 7B). Moreover, in the
original
(M1-A24) mutant the sequence upstream of ccsB
contains several possible start codons and several possible ribosome
binding sites (Fig. 7A) so that shorter forms of CcsB may be
expressed even in this mutant.

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Fig. 6.
Accumulation of cyt f in
thylakoids of wild type, the
(M1-A24) mutant,
and the autotrophic pseudorevertant that can grow aerobically. 50 µg of protein was loaded/lane; proteins were identified by heme
staining using enhanced chemiluminescence (A) or by
crossreaction with a cyt f antibody (B).

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Fig. 7.
The DNA sequence in the ccsB
upstream region and deduced N-terminal regions of the CcsB
protein in wild type and the photoautotrophic pseudorevertant.
A, DNA sequence of the aerobically photoautotrophic
pseudorevertant of the
(M1-A24) mutant. The pseudorevertant differs
from the mutant by a single point mutation (T to G) in the region
between the chloramphenicol resistance gene and the remaining portion
of ccsB. The ccsB reading frame has been
indicated and has been extended to the upstream region. The mutation
leads to the creation of a CTG codon (bold), which may serve
as start codon. Other potential in-frame initiation codons (GTG, CTG)
are in italics, areas resembling Shine-Dalgarno sequences
are underlined, and an in-frame stop codon upstream is
marked with an asterisk. The arrows indicate the
position where the chloramphenicol marker was cloned into
ccsB. The part of the ccsB gene coding for the
putative membrane spanning region is boxed. B,
deduced N-terminal regions of the CcsB protein in wild type and the
photoautotrophic pseudorevertant. Three possible translational products
from the
(M1-A24) mutant are also indicated (CcsB1-B3), starting at
potential start codons that have been italicized in
panel A. The putative membrane spanning region of CcsB has
been boxed.
(M1-A24) mutant, the degree of segregation did not improve in
anaerobic conditions. These results suggest that the CcsA protein is
indispensable for Synechocystis sp. PCC 6803.
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DISCUSSION
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
(M1-A24) mutant grew photoautotrophically
in anaerobic conditions, indicating the presence of a functional cyt
b6f complex. It exhibited about 20%
of the wild-type rate of whole chain electron transport, demonstrating that in Synechocystis sp. PCC 6803 the introduced
ccsB partial deletion does not lead to a total lack of the
cyt b6f complex. The oxygen evolution
and fluorescence induction and decay measurements (Table III, Fig. 2)
were consistent with impairment of photosynthetic electron transport
beyond the plastoquinone pool in the
(M1-A24) mutant. Consistent
with a decreased rate of whole chain electron transport, the
(M1-A24) mutant accumulated about 20% of holocyt f. In
addition, the amount of cyt c550 was very much
reduced in the
(M1-A24) mutant whereas cyt
c553 was undetectable (Fig. 5), indicating that
the mutant is impaired in a pathway common to c-type cytochromes.
(M1-A24) mutant is unparalleled in other cyt
c maturation pathways studied. Apocyt c usually
is much less stable than its holo-form because of the presence of a
periplasmic/luminal degradation system that removes nonfunctional
proteins (24, 30). The situation observed in the
Synechocystis sp. PCC 6803
(M1-A24) mutant is quite
different from that in ccs1/ccsA null mutants of
C. reinhardtii. Although in this alga only the
ccsA mutant has been characterized thoroughly, the CcsA and
CcsB homologues require each other for accumulation in vivo
(1, 5), and the ccs1 mutant is expected to have the same
phenotype as the ccsA mutant. In the ccsA mutant
of C. reinhardtii both apocyt f and apocyt
c553 were processed and very unstable with
half-lives of about 10 min, suggesting that processing does not depend
on heme attachment in this system (24, 31). The fact that the pure
(M1-I244) ccsB mutant as well as the ccsA mutant could not be obtained in Synechocystis sp. PCC 6803 suggests a lethal phenotype of these mutations. This corroborates the
view that
(M1-A24) is not a null mutant for ccsB. The
accumulation of unprocessed pre-apocyt f without heme bound
in the
(M1-A24) mutant of Synechocystis sp. PCC 6803 suggests that the mutant is impaired in both processing and heme
attachment. The fact that in the
(M1-A24) mutant (a)
about 20% of the protein was processed, contained heme, and was
assembled into a functional cyt b6f
complex, and (b) no heme binding to the unprocessed
pre-apocyt f was detected, indicate that processing and heme
attachment are closely coordinated in Synechocystis sp. PCC 6803.
(M1-A24) mutant was
obtained from characterization of the photoautotrophic pseudorevertant,
functionally complementing the
(M1-A24) mutant. The second-site
point mutation was localized in the noncoding region of the
chloramphenicol resistance marker upstream of the truncated
ccsB gene, and led to the formation of a new putative start
codon. This stretch of nucleotides contains several possible start
codons and several possible ribosome binding sites in the original
(M1-A24) mutant (Fig. 7A) raising the possibility that a
shorter and modified form of CcsB is expressed even in the original
(M1-A24) mutant. Therefore, we suggest that in the
(M1-A24)
mutant described here the shorter version of the CcsB protein may
accumulate and that accumulation of modified CcsB leads to the
accumulation of pre-apocyt f. This argument is strengthened by the fact that the photoautotrophic pseudorevertant but not wild type
still accumulates some pre-apocyt f (Fig. 6B).
This suggestion explains why the phenotype of the
(M1-A24) mutant expressing partially functional CcsB protein is so different from that
of ccsA null mutant of C. reinhardtii and why the
(M1-A24) mutant but not the mutant
(M1-I244) or the
ccsA deletion mutant could be generated in
Synechocystis sp. PCC 6803. Expression of modified CcsB
probably is also the reason for unusual stability of pre-apocyt
f in the
(M1-A24) mutant. We hypothesize that the reason
for accumulation of pre-apocyt f in thylakoid membranes of
the
(M1-A24) mutant is protection of the apoprotein from processing, heme attachment as well as degradation by the altered CcsB protein. This suggests that in the wild type CcsB also interacts with pre-apocyt c/f polypeptides to aid in processing and heme
attachment. In the
(M1-A24) mutant the partially active CcsB may
still bind the apocytochrome and protect it from degradation; however,
in the mutant, processing and heme binding appear to have slowed down
considerably. The difference between the
(M1-A24) mutant, its
photoautotrophic pseudorevertant, and wild type is primarily in the
efficiency of processing and heme attachment. This reasoning suggests
that pre-apocyt f accumulating in the
(M1-A24) mutant is
associated with CcsB. This would imply that CcsB accumulates to high
levels, at least in the
(M1-A24) mutant.
(M1-A24) mutant needed anaerobic conditions to
segregate and to grow. Oxygen sensitivity of the
(M1-A24) mutant and
tolerance of its pseudorevertant suggests that this phenotype is caused
by deficiency of CcsB function in the
(M1-A24) mutant. This
deficiency may indicate that intact CcsB but not truncated CcsB is able
to protect apocyt f and/or heme against oxidation.
Interestingly, a potential functional analog of CcsB from
Rhodobacter capsulatus, Ccl2, accumulates to 20-fold-higher levels when grown aerobically than when under anaerobic conditions (31). Ccl2 is viewed as a protein reducing apocyt c and
protecting it against oxidation, which may explain its accumulation
when oxygen is present.
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ACKNOWLEDGEMENTS
![]()
FOOTNOTES
To whom correspondence should be addressed: Dept. of Plant Biology,
Arizona State University, Box 871601, Tempe, AZ 85287-1601. Tel.:
480-905-3698; Fax: 480-965-6899; E-mail: wim@asu.edu.
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ABBREVIATIONS
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REFERENCES
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
1.
Kranz, R.,
Lill, R.,
Goldman, B.,
Bonnard, G.,
and Merchant, S.
(1998)
Mol. Microbiol.
29,
383-396[CrossRef][Medline]
[Order article via Infotrieve]
2.
Page, M. D.,
Sambongi, Y.,
and Fergusson, S. J.
(1998)
Trends Biochem. Sci.
23,
103-108[CrossRef][Medline]
[Order article via Infotrieve]
3.
Thöny-Meyer, L.
(1997)
Microbiol. Mol. Biol. Rev.
61,
337-376[Abstract]
4.
Xie, Z.,
and Merchant, S.
(1998)
Biochim. Biophys. Acta
1365,
309-318[Medline]
[Order article via Infotrieve]
5.
Xie, Z.,
Culler, D.,
Dreyfuss, B. W.,
Kuras, R.,
Wollman, F.-A.,
Girard-Bascou, J.,
and Merchant, S.
(1998)
Genetics
148,
681-692 6.
Dumont, M. E.,
Ernst, J. F.,
Hampsey, D. M.,
and Sherman, F.
(1987)
EMBO J.
6,
235-241[Medline]
[Order article via Infotrieve]
7.
Zollner, A.,
Rodel, G.,
and Haid, A.
(1992)
Eur. J. Biochem.
207,
1093-1100[Medline]
[Order article via Infotrieve]
8.
Steiner, H.,
Kispal, G.,
Zollner, A.,
Haid, A.,
Neupert, W.,
and Lill, R.
(1996)
J. Biol. Chem.
271,
32605-32611 9.
Mayer, A.,
Neupert, W.,
and Lill, R.
(1995)
J. Biol. Chem.
270,
12390-12397 10.
Thöny-Meyer, L.,
Fischer, F.,
Künzler, P.,
Ritz, D.,
and Hennecke, H.
(1995)
J. Bacteriol.
177,
4321-4326 11.
Thöny-Meyer, L.,
and Künzler, P.
(1997)
Eur. J. Biochem.
246,
794-799[Medline]
[Order article via Infotrieve]
12.
Hübschmann, T.,
Wilde, A.,
Elanskaya, I.,
Shestakov, S. V.,
and Börner, T.
(1997)
FEBS Lett.
408,
201-205[CrossRef][Medline]
[Order article via Infotrieve]
13.
Schiött, T.,
Thorne-Holst, M.,
and Hederstedt, L.
(1997)
J. Bacteriol.
179,
4523-4529 14.
Diaz, A.,
Navarro, F.,
Hervas, M.,
Navarro, J. A.,
Florencio, F. J.,
and de la Rosa, F. A.
(1994)
FEBS Lett.
347,
173-177[CrossRef][Medline]
[Order article via Infotrieve]
15.
Xie, Z.,
and Merchant, S.
(1996)
J. Biol. Chem.
271,
4632-4639 16.
Page, M. D.,
Saunders, N. F. W.,
and Fergusson, S. J.
(1997)
Microbiology
143,
3111-3122[Abstract]
17.
Inoue, K.,
Dreyfuss, B. W.,
Kindle, K. L.,
Stern, D. B.,
Merchant, S.,
and Sodeinde, O. A.
(1997)
J. Biol. Chem.
272,
31747-31754 18.
Goldman, B. S.,
and Kranz, R. G.
(1998)
Mol. Microbiol.
27,
871-874[CrossRef][Medline]
[Order article via Infotrieve]
19.
Sambongi, Y.,
and Ferguson, S. J.
(1994)
FEBS Lett.
340,
65-70[CrossRef][Medline]
[Order article via Infotrieve]
20.
Sambongi, Y.,
Crooke, H.,
Cole, J. A.,
and Ferguson, S. J.
(1994)
FEBS Lett.
344,
207-210[CrossRef][Medline]
[Order article via Infotrieve]
21.
Rippka, R.,
Deruelles, J.,
Waterbury, J. B.,
Herdman, M.,
and Stanier, R. Y.
(1979)
J. Gen. Microbiol.
111,
1-61
22.
Tichy, M.,
and Vermaas, W.
(1998)
Biochemistry
37,
1523-1531[CrossRef][Medline]
[Order article via Infotrieve]
23.
Thomas, P. E.,
Ryan, D.,
and Lewin, W.
(1976)
Anal. Biochem.
75,
168-176[CrossRef][Medline]
[Order article via Infotrieve]
24.
Howe, G.,
Mets, L.,
and Merchant, S.
(1995)
Mol. Gen. Genet.
246,
156-165[CrossRef][Medline]
[Order article via Infotrieve]
25.
Manna, P.,
and Vermaas, W.
(1997)
Plant Mol. Biol.
35,
407-416[CrossRef][Medline]
[Order article via Infotrieve]
26.
Ohashi, A.,
Gibson, J.,
Gregor, I.,
and Schatz, G.
(1982)
J. Biol. Chem.
257,
13042-13047 27.
Nicholson, D. W.,
and Neupert, W.
(1989)
Proc. Natl. Acad. Sci. U. S. A.
86,
4340-4344 28.
Nicholson, D. W.,
Stuart, R. A.,
and Neupert, W.
(1989)
J. Biol. Chem.
264,
10156-10168 29.
Sussman, J. K.,
Simons, E. L.,
and Simons, R. W.
(1996)
Mol. Microbiol.
21,
347-360[CrossRef][Medline]
[Order article via Infotrieve]
30.
Pearce, D. A.,
Page, M. D.,
Norris, H. A.,
Tomlinson, E. J.,
and Ferguson, S. J.
(1998)
Microbiology
144,
467-477[Abstract]
31.
Gabbert, K. K.,
Goldman, B. S.,
and Kranz, R. G.
(1997)
J. Bacteriol.
179,
5422-5428 32.
Goldman, B. S.,
Beck, D. L.,
Monika, E. M.,
and Kranz, R. G.
(1998)
Proc. Natl. Acad. Sci. U. S. A.
95,
5003-5008
Copyright © 1999 by The American Society for Biochemistry and Molecular Biology, Inc.
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