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J Biol Chem, Vol. 274, Issue 47, 33440-33448, November 19, 1999
From the Departments of Myeloperoxidase, a heme enzyme secreted by
activated phagocytes, uses H2O2 and
Cl Oxidants generated by activated white blood cells play a central
role in host antimicrobial defenses but may also damage host tissues
(1-5). Oxidant production begins with a membrane-associated NADPH
oxidase, which reduces molecular oxygen to superoxide. Dismutation of
superoxide then yields H2O2. Phagocytes can use
the oxidizing capacity of this H2O2 to generate
potent cytotoxic oxidants because they also secrete the heme enzyme
myeloperoxidase. At plasma concentrations of chloride
(Cl We have previously demonstrated that HOCl generated by myeloperoxidase
is in equilibrium with molecular chlorine (Cl2) through a
reaction that requires Cl
Molecular Chlorine Generated by the Myeloperoxidase-Hydrogen
Peroxide-Chloride System of Phagocytes Produces 5-Chlorocytosine in
Bacterial RNA*
§,
, and
¶
Medicine and ¶ Molecular
Biology and Pharmacology, Washington University School of Medicine,
St. Louis, Missouri 63110
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ABSTRACT
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
to generate the chlorinating intermediate hypochlorous
acid (HOCl). This potent cytotoxic oxidant plays a critical role in
host defenses against invading pathogens. In this study, we explore the
possibility that myeloperoxidase-derived HOCl might oxidize nucleic
acids. When we exposed 2'-deoxycytidine to the
myeloperoxidase-H2O2-Cl
system,
we obtained a single major product that was identified as
5-chloro-2'-deoxycytidine using mass spectrometry, high performance liquid chromatography, UV-visible spectroscopy, and NMR spectroscopy. 5-Chloro-2'-deoxycytidine production by myeloperoxidase required H2O2 and Cl
, suggesting that HOCl
is an intermediate in the reaction. However, reagent HOCl failed to
generate 5-chloro-2'-deoxycytidine in the absence of Cl
.
Moreover, chlorination of 2'-deoxycytidine was optimal under acidic
conditions in the presence of Cl
. These results implicate
molecular chlorine (Cl2), which is in equilibrium with HOCl
through a reaction requiring Cl
and H+, in
the generation of 5-chloro-2'-deoxycytidine. Activated human neutrophils were able to generate 5-chloro-2'-deoxycytidine. Cellular chlorination was blocked by catalase and heme poisons, consistent with
a myeloperoxidase-catalyzed reaction. The
myeloperoxidase-H2O2-Cl
system
generated similar levels of 5-chlorocytosine in RNA and DNA in
vitro. In striking contrast, only cell-associated RNA acquired detectable levels of 5-chlorocytosine when intact Escherichia coli was exposed to the myeloperoxidase system. This observation suggests that oxidizing intermediates generated by myeloperoxidase selectively target intracellular RNA for chlorination. Collectively, these results indicate that Cl2 derived from HOCl generates
5-chloro-2'-deoxycytidine during the myeloperoxidase-catalyzed
oxidation of 2'-deoxycytidine. Phagocytic generation of Cl2
therefore may constitute one mechanism for oxidizing nucleic acids
at sites of inflammation.
![]()
INTRODUCTION
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
), the major action of the enzyme is to convert
Cl
to hypochlorous acid (HOCl) (6, 7).
HOCl undergoes numerous reactions with biomolecules, including
aromatic chlorination (8, 9), double bond addition (10, 11), chloramine
formation (12-16), aldehyde generation (12, 17, 18), and oxidation of
thiols (19). Myeloperoxidase also converts free tyrosine to tyrosyl
radical, a reactive intermediate that cross-links proteins and
initiates lipid peroxidation (20-23). Recent studies indicate that
myeloperoxidase catalyzes the nitrite-dependent nitration
of tyrosine (24-26). Mass spectrometric analyses of tissue proteins
have detected elevated levels of oxidized amino acids characteristic of
these reactions at sites of inflammation, implicating myeloperoxidase
as one pathway for oxidative damage in vivo (8, 27-29).
and H+ (30).
In vitro studies suggested that the production of
3-chlorotyrosine by reagent HOCl involves molecular chlorine rather
than HOCl itself. Moreover, Cl2 derived from HOCl converted
cholesterol into a battery of chlorinated and oxygenated sterols (9).
We recently demonstrated that 3-chlorotyrosine levels are selectively elevated in human atherosclerotic tissue, strongly suggesting that
oxidative reactions involving HOCl or its derivatives are physiologically relevant to tissue damage at sites of inflammation (8).
Chronic inflammation is associated with an increased risk of cancer, raising the possibility that reactive intermediates generated by phagocytes might damage nucleic acids in living cells, compromising the integrity of the genome or altering cellular functions (31). Moreover, in vitro studies have identified numerous modified nucleic acids as products of oxidative reactions. Bases in DNA, for example, are hydroxylated by hydroxyl radical and singlet oxygen (32-34). Reactive nitrogen species generate nitrated nucleobases, such as 8-nitroguanine, and deaminated nucleobases, such as xanthine (35-39). Single-strand breaks in DNA have been proposed as a major effect of superoxide damage (40). Halogenated and oxygenated nucleobases are synthesized when high concentrations of hypohalous acid are reacted with free pyrimidines and purines in dilute acid (14-16, 41). 5-Chlorouracil has been detected in acid-hydrolyzed DNA exposed to reagent HOCl at neutral pH (42), although DNA does not contain uracil. Nucleobases also can be modified by aldehydes, which result from lipid peroxidation (43). Oxidized nucleic acids have been detected in DNA extracted from cells exposed to oxidizing conditions and in human urine (44-46). However, the pathways that promote the production of oxidized nucleobases in vivo and their relevance to human pathology are incompletely understood.
We examined the ability of the
myeloperoxidase-H2O2-Cl
system to
oxidize nucleic acids by using 2'-deoxycytidine as a target. Using mass
spectrometry, chromatography, UV-visible spectroscopy, and NMR
spectroscopy, we identified 5-chloro-2'-deoxycytidine as the major
stable product. Activated neutrophils were also observed to generate
5-chloro-2'-deoxycytidine in a reaction that was inhibited by heme
poisons and catalase. Reactions with reagent HOCl implicated molecular
chlorine as the oxidizing intermediate in the reaction pathway.
Unexpectedly, 5-chlorocytosine was generated in the RNA but not the DNA
of Escherichia coli exposed to the
myeloperoxidase-H2O2-Cl
system.
These observations raise the possibility that chlorinating intermediates generated by myeloperoxidase modify nucleic acids of
pathogens that are attacked by phagocytes. Such intermediates also
might modify nucleic acids in host cells at sites of inflammation, setting the scene for carcinogenesis or other deleterious changes.
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EXPERIMENTAL PROCEDURES |
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Materials
Sodium hypochlorite, H2O2, organic solvents, and sodium phosphate were obtained from Fisher. Methionine and nuclease P1 were from Calbiochem (San Diego, CA). bis-(Trimethylsilyl)trifluoroacetamide (BSTFA)1 + 1% trimethylchlorosilane, N-methyl-N-(tert-butyldimethylsilyl)-trifluoroacetamide + 1% tert-butyl-dimethylchlorosilane (MtBSTFA + 1% tert-butyl-dimethylchlorosilane), silylation grade pyridine, and acetonitrile were from Regis Technologies, Inc. (Morton Grove, IL). Porcine eosinophil peroxidase was provided by Dr. M. L. McCormick (Department of Medicine, University of Iowa). Unless otherwise indicated, all other materials were purchased from Sigma.
Methods
Isolation of Myeloperoxidase (Donor: Hydrogen Peroxide,
Oxidoreductase, EC 1.11.1.7)--
HL-60 cells were used as starting
material for preparation of myeloperoxidase. The enzyme was isolated by
sequential lectin affinity and size exclusion chromatographies (20,
47). Purified myeloperoxidase
(A430/A280 ratio of 0.6)
was dialyzed against water and stored in 50% glycerol at
20 °C.
Enzyme concentration was determined spectrophotometrically
(
430 = 178 mM
1
cm
1) (48).
Human Neutrophils--
Neutrophils were prepared by density
gradient centrifugation and suspended in Hanks' balanced salt
solution, pH 7.0 (magnesium-, calcium-, phenol red-, and
bicarbonate-free; Life Technologies, Inc.) supplemented with 100 µM diethylenetriaminepentaacetic acid (DTPA) (49). The
cells (
96% neutrophils;
4% eosinophils) were incubated at
37 °C for 60 min and maintained in suspension with intermittent
inversion. The reaction was terminated by addition of methionine to 6 mM and centrifugation of the cells at 400 × g for 10 min. The supernatant was concentrated to dryness
under vacuum, dissolved in 0.3 ml of water, centrifuged at 14,000 × g for 10 min, and subjected to HPLC fractionation.
Preparation of Chloride-free Sodium
Hypochlorite--
Chloride-free sodium hypochlorite (NaOCl) was
prepared by a modification of previously described methods (12).
Reagent NaOCl (100 ml) mixed with ethyl acetate (100 ml) was protonated
by dropwise addition of concentrated phosphoric acid (final pH
6) with intermittent shaking. The organic phase containing HOCl was
washed twice with H2O, and HOCl was re-extracted into
H2O by the dropwise addition of NaOH (final pH
9).
Residual ethyl acetate in the aqueous solution of chloride-free NaOCl
was removed by bubbling with N2. The concentration of NaOCl
was determined spectrophotometrically (
292 = 350 M
1 cm
1; Ref. 50).
Oxidation of 2'-Deoxycytidine, RNA, and DNA--
All reactions
were performed in gas-tight vials and initiated by addition with a
gas-tight syringe of oxidant (H2O2 or HOCl) through a septum while vortexing the sample. Reactions were terminated by addition of a molar excess of L-methionine (6 mM) to eliminate any remaining HOCl, Cl2, and
chloramines. The concentration of H2O2 was
determined spectrophotometrically (
240 = 43.6 M
1 cm
1; Ref. 51). The pH
dependence of 5-chloro-2'-deoxycytidine formation was determined using
reaction mixtures containing phosphoric acid, monobasic sodium
phosphate, and dibasic sodium phosphate (final concentration, 50 mM) that had been treated with Chelex-100 (Bio-Rad). The pH
of the reaction mixture (without L-methionine) was
determined at the end of incubation. RNA and DNA were extracted with
one volume of 25:24:1 phenol/chloroform/isoamyl acetate (v/v/v) and one
volume of 24:1 chloroform/isoamyl alcohol (v/v) prior to precipitation with [1/2] volume of 7.5 M ammonium acetate and 2 volumes of ice-cold ethanol (52). Reagent
N-chloro-2'-deoxycytidine was synthesized (14) by adding 1 mM HOCl to 1 mM 2'-deoxycytidine in
chloride-free 50 mM sodium phosphate (pH 7). The reaction
mixture was not quenched with methionine. Following a 30-min incubation
at 37 °C, N-chloro-2'-deoxycytidine was isolated by HPLC
as described below.
Reverse Phase HPLC of 2'-Deoxycytidine Chlorination Products-- 2'-Deoxycytidine oxidation products were analyzed by reverse phase HPLC at a flow rate of 1 ml/min using a C18 column (µPorasil; 5-µm resin, 4.6 × 250 mm; Beckman) with monitoring of absorbance at the 2'-deoxycytidine maximum of 280 nm. Solvent A was 0.1% trifluoroacetic acid (pH 2.5), and solvent B was 0.1% trifluoroacetic acid in methanol (pH 2.5). The column was equilibrated with 95% solvent A. Compounds were eluted with a discontinuous gradient of solvent B. The gradient was 5% solvent B for 4 min, 5-100% solvent B over 20 min, and then 100% solvent B for 10 min. UV-visible spectra for individual HPLC peaks were obtained using a Beckman diode array detector. For mass spectrometric analysis, HPLC fractions were collected and concentrated under vacuum. 5-Chloro-2'-deoxycytidine yield was quantified by comparison of integrated peak areas to standard curves generated using authentic material. For NMR analysis, 10-fold concentrated reaction mixtures were fractionated on a semi-preparative C18 column (µPorasil; 5-µm resin, 10 × 250 mm; Beckman) at a flow rate of 2.5 ml/min with an isocratic gradient consisting of 90% 20 mM ammonium formate (pH 6.3) and 10% methanol. N-Chloro-2'-deoxycytidine (retention time, 10 min) was isolated with a µPorasil C18 column using 5% methanol at a flow rate of 1 ml/min.
NMR Studies-- Reaction products were isolated by HPLC, solubilized in D2O and analyzed at 25 °C with a Varian Unity-Plus 500 spectrometer (499.843 MHz for 1H) equipped with a Nalorac indirect detection probe. 1H chemical shifts were referenced to external sodium 3-(trimethylsilyl)propionate-2,2,3,3-d4 in D2O. Spectra were recorded from 8 transients with a 12-s preacquisition delay over a spectral width of 8000 Hz.
Bacterial Culture--
E. coli (American Type Tissue
Collection, strain 11775) from frozen stocks was cultured overnight at
37 °C in 5 ml of Luria-Bertani broth (Difco Laboratories, Detriot,
MI). and used to inoculate 50 ml of broth. Cells were harvested midway
through log phase as assessed by absorbance at 600 nm, then chilled to
4 °C, and washed twice with ice-cold 50 mM sodium
phosphate buffer (pH 7). To expose E. coli to the
myeloperoxidase-H2O2-Cl
system,
cells (5 × 108 cells/ml) were suspended in buffer B
(100 mM NaCl, 50 mM sodium phosphate, pH 4.5)
at 37 °C. Following the addition of 50 nM
myeloperoxidase and 300 µM H2O2,
the mixture was incubated for 30 min at 37 °C. The reaction was
terminated by adding 6 mM L-methionine and
extracting nucleic acids.
Isolation and Hydrolysis of Nucleic Acids-- RNA and DNA were extracted using a modification of the procedure described by Ausubel et al. (53). Bacterial cell walls were digested with 0.4 mg/ml lysozyme for 15 min on ice. Cell lysis was induced by treatment with 1% SDS and 0.1 mg/ml proteinase K for 90 min at 37 °C. Cell lysates were extracted twice with phenol/chloroform/isoamyl acetate (25:24:1 v/v/v) and once with chloroform/isoamyl alcohol (24:1 v/v). Nucleic acids were precipitated with 0.5 volume of 7.5 M ammonium acetate and 2 volumes of ice-cold ethanol. For RNA analysis DNA was removed by DNase I digestion in the presence of placental ribonuclease inhibitor, whereas for DNA analysis RNA was removed with a combination of RNase T1 and RNase A (52). Nucleases and cell debris were extracted with phenol/chloroform, and nucleic acid polymers were isolated by ethanol precipitation.
Gas Chromatography-Mass Spectrometry (GC/MS)--
For GC/MS
analysis, ethanol-precipitated nucleic acids were suspended in 99%
formic acid and hydrolyzed for 45 min at 140 °C under a helium or
argon atmosphere. For HPLC fractions of cell media, 3 pmol
5-fluoro-2'-deoxycytidine internal standard was added to each sample.
Uniform derivatization efficiency between samples was confirmed by
monitoring the m/z 300 ion [M+·
C4H9·] of derivatized
5-fluorocytosine. After drying under vacuum, residual water was removed
from the samples by forming an azeotrope with 50 µl of pyridine and
again drying the suspension under vacuum. DNA bases were converted to
dimethyl, tert-butylsilyl (DMTBS) derivatives with excess
N-methyl-N-(t-butyldimethylsilyl)-trifluoroacetamide containing 1% t-butyl-dimethylchlorosilane (MtBSTFA + 1%
tert-butyl-dimethylchlorosilane) in acetonitrile (3:1 v/v)
at 100 °C for 60 min. 1-µl aliquots of the reaction solution were
analyzed on a Varian Star 3400 CX gas chromatograph equipped with a
12-m DB-1 capillary column (0.2-mm inner diameter, 0.33-µm film
thickness; J&W Scientific) interfaced with a Finnigan SSQ 7000 mass
spectrometer operated in the positive electron ionization mode.
Injector and interface temperatures were 250 and 280 °C,
respectively. The initial GC oven temperature was 80 °C for 2 min,
followed by a 60 °C/min increasing ramp to 180 °C and a final
10 °C/min ramp to 220 °C. Samples were analyzed in order of
increasing concentration, and derivatizing reagent injections were
analyzed between samples to ensure that traces of analyte were not
adhering to the injector. GC retention times were established for each
analysis session by injection of authentic compounds.
Electrospray Ionization-Mass Spectrometry--
HPLC fractions
were subjected to solid phase extraction on a C18 column
(Supelclean LC-18 SPE tubes, 3 ml; Supelco, Inc., Bellefonte, PA)
equilibrated with H2O to remove TFA. The column was washed
with 2 ml of H2O and eluted with 3 ml of 50% methanol, and
the recovered product was dried under vacuum. Full mass scanning, zoom
scanning, and low energy collisionally activated dissociation were
carried out on a Finnigan LCQ. A 5-µl portion of sample was injected
into the electrospray source at a flow rate of 3 µl/min. The
electrospray needle was held at 4500 V, and the counterelectrode was
held at ground potential. Methanol/water/acetic acid (50:49:1 v/v/v)
was used to dissolve samples and as carrier solvent. Helium was used as
a damping gas and collision activation partner. The flow of gas (1 ml/min) into the mass analyzer cavity was regulated by a pressure
regulator and a capillary restrictor. Flow rates were matched to adjust
the partial pressure of helium in the mass analyzer cavity to
approximately 10
3 Torr. The temperature of the heated
capillary was 200 °C. The collision energy was varied by changing
the resonance excitation RF voltage. In the full scan mode
(m/z 150 to m/z 300),
injection time and microscans were 300 ms and 3 s for acquiring
each scan, respectively. For each full scan mass spectrum, 10 scans
were signal averaged, and the background from the same number of scans was subtracted.
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RESULTS |
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The Myeloperoxidase System Oxidizes 2'-Deoxycytidine to
5-Chloro-2'-deoxycytidine--
In preliminary experiments, we exposed
adenine, cytosine, guanine, and thymine 2'-deoxynucleosides to the
myeloperoxidase-H2O2-Cl
system in
buffer A (100 mM NaCl, 100 µM DTPA, 50 mM sodium phosphate, pH 4.5). After terminating the
reaction with methionine (which scavenges HOCl, chloramines, and
H2O2), we analyzed the reaction mixture by
HPLC, monitoring absorbance at 254 nm for purines and 280 nm for
pyrimidines. 2'-Deoxycytidine generated the highest yield of product
(Fig. 1).
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The oxidation product generated by myeloperoxidase eluted from a reverse phase column at a higher methanol concentration than 2'-deoxycytidine; it also absorbed ultraviolet light at a longer wavelength (Fig. 1, inset). The product comigrated with authentic 5-chloro-2'-deoxycytidine (Fig. 1). Moreover, its absorption spectrum and that of authentic 5-chloro-2'-deoxycytidine were indistinguishable. When reagent HOCl was substituted for the enzymatic system, we obtained a product from 2'-deoxycytidine whose chromatographic behavior was identical to that of 5-chloro-2'-deoxycytidine. These observations suggest that the HOCl generated by myeloperoxidase converts 2'-deoxycytidine into 5-chloro-2'-deoxycytidine.
To further investigate the oxidation product structure, we isolated the
compounds by HPLC and subjected them to electrospray ionization tandem
mass spectrometry. The positive ion mass spectra of the myeloperoxidase
product (Fig. 2A), the
hypochlorite reaction product, and authentic 5-chloro-2'-deoxycytidine
yielded the same major [M + H]+ ion at
m/z 262. All three compounds also exhibited a
prominent ion at m/z 264. The relative abundances
of the ions at m/z 262 and 264 reflected that of
the natural isotopic abundance of 35Cl and
37Cl, strongly suggesting that the 2'-deoxycytidine
oxidation product was monochlorinated. The collisionally activated
dissociation tandem mass spectrum of the m/z 262 ion generated a product ion at m/z 146, which is
consistent with cleavage of the N-glycoside bond of
5-chloro-2'-deoxycytidine to yield 35Cl-substituted
cytosine (Fig. 2B). The collisionally activated dissociation
tandem mass spectrum of the m/z 264 ion likewise generated a product ion at m/z 148, consistent
with cleavage of the chlorinated nucleoside to yield
37Cl-substituted cytosine (Fig. 2C). The
electrospray ionization MS/MS spectrum of the myeloperoxidase product
indicates that the chlorine substitution site is likely to reside on
the cytosine base of 2'-deoxycytidine.
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Further structural characterization of the modified nucleobase
generated from 2'-deoxycytidine by myeloperoxidase was achieved using
GC/MS to obtain an informative electron ionization mass spectrum and GC
retention time from material isolated by HPLC. This procedure yields
information only about the nucleobase because the
N-glycoside bond of the nucleoside is hydrolyzed during the derivatization reactions. After establishing retention times and mass
spectra for the trimethylsilyl and DMTBS derivatives of authentic 5-chloro-2'-deoxycytidine, we analyzed the oxidation product generated by either HOCl or the complete
myeloperoxidase-H2O2-Cl
system.
The positive ion mass spectra and GC retention times of the
trimethylsilyl derivative of the myeloperoxidase reaction product and
the HOCl reaction product were essentially identical to those
obtained using authentic 5-chloro-2'- deoxycytidine.
The mass spectrum of the myeloperoxidase reaction product exhibited a
low abundance ion at m/z 289, consistent with the
molecular ion [M+·] of the
bis-trimethylsilyl derivative of 5-chlorocytosine.
Trimethylsilyl derivatives typically fragment with loss of
CH3·; the expected ion was observed at
m/z 274. The ions at m/z
274 and m/z 276, as well as those at
m/z 289 and m/z 291, exhibited the 3:1 isotopic ratio expected for a monochlorinated
compound containing 35Cl or 37Cl. Ions also
were observed at m/z 254 [M
Cl
]+ and m/z 238 ([M
CH3·
HCl] or [M
CH4
Cl
]+). As anticipated for
compounds that lack chlorine, the latter two ions failed to exhibit
prominent [M + 2] ions.
We also subjected the DMTBS derivatives of the myeloperoxidase reaction
product and the HOCl reaction product to electron ionization GC/MS.
Again, the GC retention times and mass spectra of these compounds were
essentially identical to those of the DMTBS derivative of authentic
5-chloro-2'-deoxycytidine. The positive ion mass spectra of the DMTBS
derivatives were dominated by ions at m/z 316 [M+·
C4H9·]
for 35Cl and 318 [M+·
C4H9·] for 37Cl.
Ions from the DMTBS derivative were concentrated into this single major
informative ion, making DMTBS derivatization the method of choice for
sensitive analysis.
To confirm that the chlorination site of 2'-deoxycytidine is the
5-position carbon on the nucleobase ring, we oxidized the nucleoside
with the complete myeloperoxidase system or HOCl, isolated the product
by reverse phase HPLC, and subjected the purified material to
1H NMR analysis. The spectra obtained from the
myeloperoxidase product, the hypochlorous acid product, and authentic
5-chloro-2'-deoxycytidine were essentially identical. Significant
features of the product spectra included the lack of a proton resonance
at C-5, a downfield shift in the proton resonance at C-6 and conversion
of the C-6 proton resonance from a doublet to a singlet, both of which
are consistent with substitution of a chlorine atom at the C-5 position (Fig. 3).
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Reaction Requirements for Chlorination of 2'-Deoxycytidine by
Myeloperoxidase--
We used reverse phase HPLC to characterize the
chlorination of 2'-deoxycytidine by myeloperoxidase. Generation of
5-chloro-2'-deoxycytidine required myeloperoxidase, Cl
,
and H2O2; it was blocked by catalase, a
scavenger of H2O2 (Table I). The overall yield of the reaction was
15% relative to H2O2. Two heme enzyme
inhibitors, cyanide and azide, also blocked product formation.
Chlorination also was inhibited by methionine, which scavenges HOCl,
chloramines, and H2O2. These results
demonstrate that chlorination of 2'-deoxycytidine by myeloperoxidase
requires active enzyme, Cl
, and
H2O2. Eosinophil peroxidase, but not
lactoperoxidase and horseradish peroxidase, was also capable of
chlorinating 2'-deoxycytidine, although with much less efficiency than
myeloperoxidase (Table I). Unlike lactoperoxidase and horseradish
peroxidase, eosinophil peroxidase can generate low levels of HOCl from
H2O2 and Cl
(54). This property
might account for its chlorinating ability.
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Fig. 4 illustrates the effect of varying
reaction conditions on 5-chloro-2'-deoxycytidine generation by
myeloperoxidase. Chlorination was maximal at plasma concentrations of
Cl
(100 mM) and under acidic conditions. The
reaction was proportional to H2O2 concentration
up to 400 µM, with little increase in product yield at
higher peroxide concentrations. Its progress curve was initially rapid,
and then it gradually slowed.
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Chlorination of 2'-Deoxycytidine Involves Molecular
Chlorine--
HOCl generated by myeloperoxidase is in equilibrium with
Cl2 through a reaction that requires Cl
and a
proton (Reaction 2). To determine whether HOCl or Cl2 is the chlorinating species that generates 5-chloro-2'-deoxycytidine, we
investigated the Cl
and H+ dependence of the
synthesis of the compound by reagent HOCl. At pH 4.5 and plasma
concentrations of Cl
, chlorination of 2'-deoxycytidine
was directly proportional to the concentration of HOCl in the reaction
mixture (Fig. 5A). In the
presence of 100 mM Cl
, the yield of
5-chloro-2'-deoxycytidine rose with increasing [H+] (Fig.
5B). In contrast, increasing [H+] had little
effect on the yield of 5-chloro-2'-deoxycytidine in the absence of
Cl
. Chlorination of 2'-deoxycytidine by HOCl required
millimolar concentrations of Cl
at pH 4.5 (Fig.
5C). The acidic pH optimum and Cl
dependence
of chlorination implicates a Cl2-like species, not HOCl
itself, as the oxidizing intermediate in 5-chloro-2'-deoxycytidine generation.
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N-Chloro-2'-deoxycytidine Is Not Required for
5-Chloro-2'-deoxycytidine Generation--
Cl2 might be
derived from the reaction of HOCl with Cl
(Reaction 2),
which would explain the Cl
dependence of chlorination.
Alternatively, it might be generated indirectly from the chloramine of
2'-deoxycytidine (14). To distinguish between these two possibilities,
we determined how adding Cl
before or after HOCl affected
the yield of 5-chloro-2'-deoxycytidine (Table
II). The order of addition should not
affect the yield if Cl2 is derived from the chloramine,
whose production does not require Cl
. We found, however,
that the yield declined dramatically when Cl
was added
last. This observation implies that reaction conditions that favor the
formation of chloramine actually inhibit 5-chloro-2'-deoxycytidine generation, presumably by competing for HOCl.
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To further examine the role of chloramines in 5-chloro-2'-deoxycytidine formation, we determined whether isolated N-chloro-2'-deoxycytidine can generate 5-chloro-2'-deoxycytidine. N-Chloro-2'-deoxycytidine was synthesized (14) and isolated by reverse phase HPLC. Its structure was confirmed in three ways: (i) by UV-visible spectroscopy, which revealed absorbance maxima at 227 and 273 nm, which are similar to previously observed values for N-chlorocytosine (14); (ii) by electrospray ionization tandem mass spectrometry; the collisionally activated tandem mass analysis of the material demonstrated that the molecular ion at m/z 262 was converted to an ion at m/z 146, which is consistent with the loss of deoxyribose, and the collisionally activated tandem mass analysis of the ion at m/z 146 showed that a single major ion formed at m/z 111, which is consistent with the loss of chlorine radical from the precursor ion; this ion was not observed with 5-chloro-2'-deoxycytidine; and (iii) by using methionine to convert the product to 2'-deoxycytidine and detecting 2'-deoxycytidine through UV-visible spectroscopy and HPLC.
At plasma concentrations of Cl
(100 mM NaCl),
there was no detectable conversion of
N-chloro-2'-deoxycytidine to 5-chloro-2'-deoxycytidine at
either pH 7 or pH 4.5 (Fig. 6). In
contrast, 5-chloro-2'-deoxycytidine was generated under strongly acidic
conditions (0.1 M HCl), with a yield of 51%. Collectively,
these observations provide strong evidence that, under our experimental
conditions, 5-chloro-2'-deoxycytidine generation competes with
chloramine formation and that N-chloro-2'-deoxycytidine is
not an intermediate in the reaction.
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Myeloperoxidase Produces 5-Chlorocytosine in Double-stranded DNA
and RNA--
To determine whether myeloperoxidase can chlorinate
cytosine residues in polymeric nucleic acids, we incubated 0.4 mg/ml
calf thymus DNA or calf liver RNA in buffer A supplemented with 20 nM myeloperoxidase and 300 µM
H2O2. After 60 min at 37 °C, the reaction
was terminated by adding methionine to a final concentration of 6 mM. The reaction mixture was then subjected to acid
hydrolysis, and the free nucleobases were converted to their DMTBS
derivatives. Electron ionization GC/MS analysis of derivatized acid
hydrolysates obtained from DNA or RNA exposed to the complete
myeloperoxidase system produced a peak of material in the total ion
chromatogram that eluted with the same GC retention time as the
bis-DMTBS derivative of authentic 5-chlorocytosine (Fig.
7). Full scan mass spectra of these
materials revealed prominent ions at m/z 316 and
318. The relative abundances of the ions was as expected for a
chlorine-containing compound and was essentially identical to that
observed for the bis-DMTBS derivative of authentic
5-chlorocytosine (Fig. 7, insets). Both myeloperoxidase and
H2O2 were required for generation of the
compound. These results demonstrate that the
myeloperoxidase-H2O2-Cl
system
can chlorinate cytosine bases in polymeric DNA or RNA.
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5-Chlorocytosine Is Generated Selectively in the RNA of E. coli Exposed to Myeloperoxidase.-- To determine whether the myeloperoxidase system can chlorinate cell-associated nucleic acids, we suspended E. coli in buffer B (50 mM sodium phosphate, 100 mM sodium chloride, pH 4.5) containing 50 nM myeloperoxidase. We then added H2O2 to a final concentration of 300 µM and incubated the suspension for 30 min at 37 °C. The reaction was terminated by adding 6 mM L-methionine. To isolate RNA, total cellular nucleic acid was exposed to DNase, and the polymer that remained was isolated by precipitating it with ice-cold ethanol. We used RNase to isolate DNA in a similar manner. Isolated RNA and DNA then were subjected to acid hydrolysis.
When the acid hydrolysate of the E. coli RNA was derivatized
with DMTBS and subjected to electron ionization GC/MS, we detected a
peak of material with a GC retention time and mass spectrum identical
to those of the bis-DMTBS derivative of 5-chlorocytosine. The compound contained the characteristic 35Cl and
37Cl peaks of the [M+·
C4H9·] ion of 5-chlorocytosine
at m/z 316 and 318, respectively (Fig. 8). This signal was not observed when
H2O2 and myeloperoxidase were omitted from the
incubation medium.
|
Selected ion monitoring and comparison with a standard curve suggested that 2% of the cytosine in RNA had been converted to 5-chlorocytosine in E. coli exposed to the complete myeloperoxidase system. In contrast, 5-chlorocytosine was undetectable in the bacterial DNA samples. The limit of detection for 5-chlorocytosine was <0.4% of DNA cytosine, suggesting that myeloperoxidase generates reactive intermediates that selectively chlorinate RNA within bacterial cells.
Activated Human Neutrophils Employ the
Myeloperoxidase-H2O2-Cl
System to Generate 5-Chloro-2'-deoxycytidine--
To determine whether
HOCl generated by human neutrophils might chlorinate nucleic acids, we
activated human neutrophils with phorbol myristate acetate in
physiological salt solution supplemented with 2'-deoxycytidine.
Detectable amounts of 5-chloro-2'-deoxycytidine were observed by GC/MS
analysis of the cell-conditioned medium when cells were stimulated with
phorbol ester or phorbol ester plus superoxide dismutase.
5-Chloro-2'-deoxycytidine formation required activation of the cells
with phorbol ester and was inhibited by catalase and heme poisons,
implicating myeloperoxidase and H2O2 in the
reaction (Fig. 9). Superoxide dismutase
enhanced the yield of the reaction, perhaps by increasing
H2O2 availability or preventing inactivation of
myeloperoxidase by superoxide (55).
|
| |
DISCUSSION |
|---|
|
|
|---|
Our results demonstrate that the
myeloperoxidase-H2O2-Cl
system
can oxidize nucleobases, particularly 2'-deoxycytidine. Multiple lines
of evidence indicate that the major product of 2'-deoxycytidine oxidation is 5-chloro-2'-deoxycytidine. First, the HPLC retention time
and absorption spectrum of the single major oxidation product that
results from exposing 2'-deoxycytidine to myeloperoxidase was identical
to that of authentic 5-chloro-2'-deoxycytidine. Second, the
electrospray positive ion mass spectrum and collisionally activated
tandem mass spectra of the reaction product that contained 35Cl and 37Cl were indistinguishable from those
of authentic 5-chloro-2'-deoxycytidine. Third, the retention times on
gas chromatography and the mass spectra of two different derivatives of
the oxidation product were essentially identical to those of
5-chloro-2'-deoxycytidine. Fourth, the 1H NMR spectrum of
the reaction product is identical to that of authentic
5-chloro-2'-deoxycytidine. Fifth, the optimal reaction conditions for
synthesis of the product were similar to those previously reported for
HOCl synthesis. Sixth, scavengers of HOCl inhibited the generation of
5-chloro-2'-deoxycytidine by myeloperoxidase, whereas reagent HOCl
could replace the enzymatic system. Collectively, these results
indicate that reactive species generated by myeloperoxidase chlorinate
2'-deoxycytidine at the 5-position.
HOCl or its conjugate base, hypochlorite, is generally thought to be
the chlorinating intermediate generated by myeloperoxidase. However,
HOCl is in equilibrium with Cl2 through a reaction that requires Cl
and H+ (Reaction 2). Two lines of
evidence strongly suggest that a Cl2-like species is the
chlorinating intermediate in 5-chloro-2'-deoxycytidine production.
First, chlorination of 2'-deoxycytidine by reagent HOCl was optimal at
acidic pH. Second, HOCl failed to chlorinate 2'-deoxycytidine in the
absence of Cl
(Scheme 1).
These observations implicate a Cl2-like species in the
conversion of 2'-deoxycytidine into 5-chloro-2'-deoxycytidine.
|
Patton et al. (14) synthesized halogenated cytosine by the
addition of high concentrations of reagent hypohalous acid to cytosine
in dilute acid; they proposed that 5-chlorocytosine is generated by
Cl2 when N-chlorocytosine is acidifed (3, 14). To address the relative role of Cl2 generated directly from
HOCl (Reaction 2) versus Cl2 generated
indirectly from chloramine, we first determined whether the yield of
5-chloro-2'-deoxycytidine is affected by the order in which
Cl
is added. If the Cl2 that mediates
5-chloro-2'-deoxycytidine formation is derived from chloramine, the
product yield should be the same or greater when Cl
is
added to the reaction mixture last rather than first. However, we
observed that the yield declined dramatically when Cl
was
added last. This implies that reaction conditions that favor chloramine
formation actually inhibit 5-chloro-2'-deoxycytidine generation. We
then directly examined the ability of
N-chloro-2'-deoxycytidine to generate
5-chloro-2'-deoxycytidine, but we detected no product under our
standard reaction conditions. In contrast, when the chloramine was
subjected to strongly acidic conditions, we obtained a high yield of
5-chloro-2'-deoxycytidine, as previously reported (14). Taken together,
these observations provide strong evidence that
N-chloro-2'-deoxycytidine is not an intermediate in the
reaction under our experimental conditions. Instead, generation of
5-chloro-2'-deoxycytidine from HOCl competes with chloramine formation
over a physiologically plausible pH range.
We detected 5-chlorocytosine in the formic acid hydrolysates of calf
liver RNA, calf thymus DNA and RNA isolated from E. coli exposed to the
myeloperoxidase-H2O2-Cl
system.
These observations indicate that the chlorinating intermediate(s) generated by myeloperoxidase is capable of reacting with biological targets remote from the active site of the enzyme. We were surprised to
discover, however, that 5-chlorocytosine appeared only in the RNA and
not the DNA of bacteria exposed to myeloperoxidase. This selective
halogenation suggests that cytosine bases of RNA are vulnerable to
oxidation by the chlorinating intermediate, whereas those of
intracellular DNA are not, perhaps because of the structure of DNA, the
location in the cell, or the interactions with protective proteins. We
were unable to detect 5-chlorocytosine in bacteria exposed to activated
neutrophils. However, the limit of detection in this analysis was ~1
in 104 nucleobases, and studies of other DNA oxidation
products suggest that the physiologically relevant level will be on the
order of 1 in 107-108 nucleobases (56). In
future studies it will clearly be important to use more sensitive
methods to determine whether phagocytes halogenate nucleotides and
polymeric nucleic acids of intact bacterial and mammalian cells.
Experiments with cultured neutrophils demonstrated that when activated by phorbol myristate acetate, these cells could convert extracellular 2'-deoxycytidine to 5-chloro-2'-deoxycytidine. Cellular deoxycytidine chlorination was enhanced by superoxide dismutase but blocked in the presence of heme enzyme inhibitors and catalase, consistent with a role for hydrogen peroxide and myeloperoxidase in the reaction.
One important question is whether the acidic pH optimum for 5-chlorocytosine generation by myeloperoxidase is likely to exist in vivo. It is relevant, therefore, that cultured activated macrophages form phagocytic compartments that achieve a pH of less than 4 (57). Also, tissue hypoxia at sites of inflammation or infection results in acidic conditions that would enhance the generation of Cl2 by myeloperoxidase (58, 59). It is possible that myeloperoxidase-derived chloramines could generate 5-chlorocytosine when exposed to strongly acidic conditions such as those in phagocyte organelles or gastric lesions. Furthermore, human neutrophils use a Cl2-like species to generate 3-chlorotyrosine from tyrosine in vitro, and we have shown that 3-chlorotyrosine levels are markedly elevated in human atherosclerosis, a chronic inflammatory condition (8, 30).
Detecting 5-chlorocytosine in vivo would strongly support a role for Cl2 as a physiologic oxidant generated by activated phagocytes. Moreover, chlorinated pyrimidines such as 5-chlorocytosine are attractive candidates for exploring the role of phagocytes in oxidizing nucleic acids because myeloperoxidase is the only known human enzyme that generates HOCl at plasma halide ion concentrations. One strategy for addressing this issue would be to analyze inflammatory tissues for 5-chloro-2'-deoxycytosine. The mass spectrometric methods we have developed should provide powerful tools for investigating the role of myeloperoxidase in damaging nucleic acids in vivo.
If chlorinated pyrimidines are generated in vivo, they could have profound effects on the cells in which they form and even on neighboring cells (60-64). Thus, cultured mammalian cells take up and phosphorylate 5-chloro-2'-deoxycytidine, which then can be incorporated into genomic DNA. Moreover, cellular enzymes deaminate 5-chloro-2'-deoxycytidine to the thymidine analog, 5-chloro-2'-deoxyuridine (60). Such chlorinated pyrimidines exhibit antiviral activity, alter cellular pyrimidine metabolism, induce sister chromatid exchange, and mutate genes (61-64). These observations raise the possibility that myeloperoxidase-catalyzed halogenation of extracellular or intracellular nucleosides and nucleotides may yield products that can be incorporated into nucleic acids, where they would exert mutagenic and cytotoxic effects. Potential substrates for halogenation include plasma nucleosides and nucleobases, intracellular RNA and DNA, deoxycytidine released by T and B cells, and intracellular pools of cytidine and deoxycytidine nucleotides (65, 66).
It is interesting to note that another halogenated pyrimidine, 5-fluorouracil, is known to be incorporated into RNA (67). Many of the cytotoxic effects of this chemotherapeutic agent are thought to be mediated by RNA, suggesting that oxidative damage to RNA may also be biologically relevant. Oxidatively damaged bases also can be incorporated into DNA by DNA polymerase. Organisms have enzymes that cleanse the nucleotide pool of such potentially dangerous species. The bacterial MutT protein, for example, is a nucleoside-triphosphate pyrophosphohydrolase that destroys a mutagenic form of deoxyguanosine triphosphate, 8-oxo-dGTP (68). Mutations in mutT increase the spontaneous mutation rate in the E. coli genome 100-10,000-fold (69-71).
The suggestion that phagocyte-derived toxins could contribute to
carcinogenesis by oxidizing cellular nucleic acids is consistent with
the association between chronic inflammation and malignancy. Our
demonstration that myeloperoxidase can generate reactive chlorinating and nitrating intermediates suggests that nucleic acids may indeed be a
target for damage. Detecting chlorinated pyrimidines at sites of
inflammation in vivo would strongly support this hypothesis, with important implications for tissue injury and tumor development at
chronically inflamed sites.
| |
ACKNOWLEDGEMENTS |
|---|
We thank Dr. A. d'Avignon (Department of Chemistry, Washington University) for assistance with NMR studies and Dr. M. L. McCormick (Department of Medicine, University of Iowa) for providing eosinophil peroxidase. Mass spectrometry experiments were performed at the Washington University School of Medicine Mass Spectrometry Resource.
| |
FOOTNOTES |
|---|
* This work was supported in part by National Institutes of Health Grants AG12293, AG15013, and RR00954 and by funds from the American Heart Association and the Monsanto-Searle/Washington University Biomedical Program.The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
§ Supported by a Biophysics Training Grant from the National Institutes of Health.
To whom correspondence should be addressed: Div. of
Atherosclerosis, Nutrition and Lipid Research, Campus Box 8046, 660 South Euclid Ave., St. Louis, MO 63110. Fax: 314-362-0811; E-mail:
heinecke@im.wustl.edu.
| |
ABBREVIATIONS |
|---|
The abbreviations used are: BSTFA, bis-(trimethylsilyl)trifluoroacetamide; DTPA, diethylenetriaminepentaacetic acid; GC, gas chromatography; MS, mass spectrometry; MtBSTFA, N-methyl-N-(tert-butyldimethylsilyl)-trifluoroacetamide; HPLC, high performance liquid chromatography; DMTBS, dimethyl, tert-butylsilyl.
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