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J Biol Chem, Vol. 274, Issue 47, 33565-33570, November 19, 1999
From the Instituto de Bioquímica Vegetal y
Fotosíntesis, Universidad de Sevilla y Consejo Superior de
Investigaciones Científicas, Centro Isla de la Cartuja,
Américo Vespucio s/n, 41092 Sevilla, Spain
A number of surface residues of cytochrome
c6 from the cyanobacterium Anabaena
sp. PCC 7119 have been modified by site-directed mutagenesis. Changes
were made in six amino acids, two near the heme group (Val-25 and
Lys-29) and four in the positively charged patch (Lys-62, Arg-64,
Lys-66, and Asp-72). The reactivity of mutants toward the
membrane-anchored complex photosystem I was analyzed by laser flash
absorption spectroscopy. The experimental results indicate that
cytochrome c6 possesses two areas involved in
the redox interaction with photosystem I: 1) a positively charged patch
that may drive its electrostatic attractive movement toward photosystem
I to form a transient complex and 2) a hydrophobic region at the edge
of the heme pocket that may provide the contact surface for the
transfer of electrons to P700. The isofunctionality of
these two areas with those found in plastocyanin (which acts as an
alternative electron carrier playing the same role as cytochrome c6) are evident.
In cyanobacteria and green algae, cytochrome
(Cyt)1
c6 acts as a soluble redox carrier that can
replace plastocyanin in the transport of electrons between the two
membrane-embedded complexes Cyt b6f
and photosystem I (PSI) (see Refs. 1 and 2 for reviews). In higher
plants, however, the copper protein is the only electron carrier. The
cyanobacterium Anabaena, like some other organisms, is able
to synthesize either Cyt c6 or plastocyanin
(which both exhibit a basic isoelectric point of ~9) as a function of
copper concentration in the growing medium (3).
The structures and functions of these two metalloproteins have been
extensively studied in a wide range of organisms (4-11). According to
our laser flash-induced kinetic studies, the reaction mechanism of PSI
reduction follows three different models: type I, which involves an
oriented collision between the two redox partners; type II, which
proceeds through the formation of a transient complex prior to electron
transfer; and type III, which requires an additional rearrangement step
so as to make the redox centers orientate properly within the complex
(9). During the evolution of photosynthetic organisms, interaction
between a positively charged Cyt c6 and PSI was
first optimized (as is the case with Anabaena Cyt
c6, which follows the type III mechanism) and
only later in evolution was a more complex kinetic mechanism developed with plastocyanin (2).
The three-dimensional structures of Cyt c6 from
the two eukaryotic green algae Monoraphidium (12) and
Chlamydomonas (13) and from the cyanobacterium
Synechococcus (14) have been solved. The analysis of the Cyt
c6 molecule compared with the plastocyanin structure allowed us to identify a hydrophobic region around the solvent-exposed heme propionates that resembles the north pole of
plastocyanin as well as a negatively charged patch in eukaryotic Cyt
c6 similar to the east face of eukaryotic
plastocyanin (12). In Anabaena, neither Cyt
c6 nor plastocyanin exhibits the acidic patches
at their east face, which is rather positively charged (2).
Extensive mutagenesis studies of plastocyanin have supplied relevant
information on the role of specific residues located both in its north
and east faces (5, 8, 15-17). Recently, we performed a site-directed
mutagenesis analysis of Synechocystis Cyt
c6 (18). Aspartates 70 and 72 appear to be
located in a negatively charged region of Cyt c6
that may be isofunctional with the well known "south-east" acidic
patch of plastocyanin. In addition, Phe-64 (which is close to the heme
group and could be the counterpart of Tyr-83 in plastocyanin (19)) does
not appear to be involved in the electron transfer to PSI. In contrast, Arg-67, which is located at the edge of the Cyt
c6 acidic area, seems to be crucial.
This paper reports the kinetic and thermodynamic characterization of
PSI reduction by a set of site-directed mutants of Anabaena Cyt c6. The results demonstrate that a single
mutation of specific residues in the hydrophobic or positively charged
area of Cyt c6 can promote drastic changes in
the reaction mechanism. The two functional areas of Cyt
c6 involved in PSI photoreduction have been identified.
Purification of Native Cytochrome c6--
The
hemeprotein from Anabaena sp. PCC 7119 was purified as
described previously (11), but with slight modifications. Cyt c6 samples were applied to a CM-cellulose column
after oxidation with potassium ferricyanide. Elution of the adsorbed
proteins was performed with a 50 µM potassium
ferricyanide solution in a linear gradient of 2-30 mM
potassium phosphate buffer, pH 7.0. The fractions containing pure Cyt
c6 were pooled, concentrated on an Amicon
pressure-dialysis cell fitted with a YM-10 membrane, and stored at
Construction of Mutants--
The mutant petJ genes
were constructed by polymerase chain reaction with the QuickChange kit
(Stratagene) using oligonucleotides of 32 base pairs, 15 ng of DNA
templates, and 12 min of extension time. The previously described
expression construction for the petJ gene from
Anabaena (21) was used as a template. The DNA sequencing
service MediGenomix carried out the nucleotide sequence analysis. Other
molecular biology protocols were standard (22).
Production of Recombinant Proteins and Purification
Procedures--
Escherichia coli MC1061-transformed cells
were grown in M9 medium (22) supplemented with 1 g/liter Tryptone, 6 mg/liter Fe(III) ammonium citrate, and 100 µg/ml ampicillin. Cells
from 10-liter microaerobic cultures were collected, and the periplasmic fraction was extracted according to the method of Hoshino and Kageyama
(23) as modified by Eftekhar and Schiller (24). The resulting
suspension was extensively dialyzed against 2 mM potassium phosphate, pH 7.0. From this point, the purification procedure was that
for native Cyt c6 (see above), with the
exception of mutants K66E and D72K, which were eluted with buffer
gradients ranging from 1 to 10 mM and from 2 to 120 mM, respectively. In all cases, 50 µM
potassium ferricyanide was added to the gradient solutions to keep Cyt
c6 oxidized. Protein concentration was
determined as described previously (21).
Redox Titrations--
The redox potential value for the heme
group in each Cyt c6 mutant was determined as
reported previously (21, 25), for which the differential absorbance
changes at 553 minus 570 nm were followed. Errors in the
experimental determinations were less than ±5 mV.
Preparation of PSI Particles--
PSI particles were isolated
from Anabaena cells by Laser Flash Absorption Spectroscopy--
The kinetics of
flash-induced absorbance changes in PSI were followed at 820 nm as
described previously (9, 18). Experimental conditions and the standard
reaction mixture were also as reported previously (17); the buffer used
throughout this work was 20 mM Tricine/KOH, pH 7.5. Unless
otherwise indicated, low and high ionic strengths refer to the absence
and addition of 10 mM MgCl2, respectively. Data
collection and kinetic and thermodynamic analyses were carried out as
reported by Hervás et al. (9, 10). Apparent thermodynamic parameters were estimated as described Díaz
et al. (6) by fitting the experimental data to the Watkins
equation (30). The values for the rate constant for electron transfer and KA (see below) were determined according to the
formalism by Meyer et al. (31).
Structure Simulation--
The structures of WT and mutant Cyt
c6 were modeled using the SYBYL program (Tripos
Associates) in an SGI RC10000 workstation. The three-dimensional
crystal structure of Cyt c6 from the green alga
Monoraphidium braunii (12) was used as a template. Sequence alignment and subsequent amino acid substitution were performed with
the BIOPOLYMER module of SYBYL Version 6.4. Force field parameters for
the heme moiety were those in the AMBER package (32). The resulting
file was first submitted to energy minimization in vacuo up
to a root mean square energy gradient of 0.41 kJ mol To analyze the role of specific residues of Anabaena
Cyt c6 in the reaction mechanism of PSI
reduction, six amino acids (two near the heme group and four in the
positively charged east face) were chosen for mutations (Fig.
1). At the edge of the heme crevice, modifications were made at residues 25 and 29: Val-25, which is located
near the heme The EPR and electronic absorption spectra of Anabaena Cyt
c6 were not changed by the mutations (data not
shown), but its midpoint redox potential (Em) could
be significantly affected (Table I). The
Em value was unchanged when the residue mutated was
at the east face, including Arg-64, but it was ~50 mV lower when the
mutations were located near the heme group. Only minor differences were
observed in the 1H NMR spectra and nuclear Overhauser
effect intensities of heme resonances with protons from other
residues.2
The kinetics of PSI reduction by WT Cyt c6 are
biphasic, but those with the mutants (with the exception of D72K) are
monoexponential, lacking the fast phase typically observed with the WT
species. As shown in Fig. 2, the kinetics
corresponding to D72K and WT Cyt c6 exhibited a
sharp initial fast phase (with a rate constant that was independent of
donor protein concentration) followed by a slower decay. In contrast,
the oscilloscope traces with mutants V25A and V25E fit to single
exponential curves.
Fig. 3 shows that the observed pseudo
first-order rate constant (kobs) of PSI
reduction by any mutant (with the exception of D72K) varied linearly
with Cyt c6 concentration. This can be interpreted by assuming that there is no formation of any stable complex between PSI and Cyt c6, and the reaction
thus follows a collisional kinetic mechanism (type I). With mutant
D72K, however, the protein concentration dependence of
kobs exhibited a saturation profile, which
indicates the formation of a bimolecular Cyt
c6·PSI complex prior to electron transfer. The
extrapolated rate constant at infinite D72K concentration is similar to
its electron transfer rate constant, which is obtained directly from
the fast kinetic phase, thus suggesting a type II mechanism.
Such a saturation profile with D72K was even more evident at lower
ionic strengths, which increase attractive electrostatic interactions.
As shown in Fig. 4, the D72K mutant
showed efficient complex formation, with an equilibrium constant
(KA) of 1.06 × 105
M
Fig. 4 also shows that the V25A mutant was likewise able to form a
transient complex with PSI at low ionic strength, even though its
kinetic profiles of PSI reduction were monophasic at any ionic
strength. The KA value for complex formation between
V25A and PSI is 1.07 × 104
M The bimolecular rate constant for the overall reaction (kbim) of PSI reduction, which can be calculated from the linear plots in Fig. 3, is smaller with any mutant than with WT Cyt c6 (Table I). In the hydrophobic patch, replacement of Val-25 with alanine or glutamate promoted a decrease in kbim of ~2 and 60 times, respectively, whereas mutation of Lys-29 to histidine involved a parallel decrease of ~50% as compared with WT Cyt c6. Substitution of Arg-64, in its turn, by glutamate induced the rate constant to decrease by a factor of 5. In the east face, replacement of Lys-62 and Lys-66 with glutamate made the kbim value decrease to half that of WT Cyt c6. In the case of D72K, it should be noted that the bimolecular rate constant in Table I refers to its association constant, which is kinetically different from the other kbim values in the table. Its electron transfer rate constant, calculated directly from the fast phase, compares well with that of WT Cyt c6, as does the maximum percentage of fast phase (Table I). Taking into account the electrostatic nature of the interaction of Cyt
c6 with PSI, a detailed analysis of the effect
of ionic strength on kbim was performed. Fig.
5 shows that the
kbim values with WT Cyt
c6 monotonically diminished with increasing NaCl
concentration, thereby indicating the existence of attractive
electrostatic interactions between the reaction partners as described
previously (10, 11). A similar effect of ionic strength on
kbim was observed with all mutants, but some
differences could be found among them. Actually, the
kbim values with mutants V25A and D72K are
significantly higher than that with WT Cyt c6 at
low ionic strength, but they decreased drastically upon small additions
of NaCl. Mutant K29H showed an ionic strength dependence similar to
that of WT Cyt c6, although its electron
transfer efficiency was lower in the whole range analyzed. The
kbim values with all the other mutants are lower than that with WT Cyt c6, indicating that the
changes in net electrostatic charge alter the attractive interactions
between PSI and mutant proteins.
Using the Watkins equation (30), the bimolecular rate constant extrapolated to infinite ionic strength (kinf) (which facilitates the analysis of the intrinsic reactivity of redox partners in the absence of electrostatic interactions) can be calculated from the experimental data. As shown in Table I, the kinf values with Cyt c6 mutated at the positively charged patch are very similar to that with WT Cyt c6, a fact that can be explained by assuming that the changes in reactivity induced by these mutations are mainly due to electrostatic, and not structural, effects. The only exception is R64E, for which the kinf value is 4-5 times lower than that with WT Cyt c6, a finding suggesting that the change in electrostatic charge is not the only factor affecting its reactivity toward PSI, as reported previously for Synechocystis Cyt c6 (18). The effect of the K29H mutation seems to be merely electrostatic in nature, as kinf is similar to that with WT Cyt c6. The two mutations at position 25 involve modifications that make kinf lower (the V25E mutant, in particular, exhibits a kinf value that is 70 times lower than that with WT Cyt c6). To gain further insights into the nature of the interactions between
PSI and Cyt c6, a thermodynamic analysis of PSI
reduction by the Cyt c6 mutants was performed.
In all cases, the temperature dependence of the observed rate constant
(kobs) yielded linear Eyring plots with no
breakpoints, from which the values for the apparent activation enthalpy
(
To check whether the differences in
Up to now, the only site-directed mutational analysis of any Cyt c6 was recently reported by De la Cerda et al. (18) in the cyanobacterium Synechocystis. This hemeprotein, which is almost neutral, reacts with PSI according to a simple collisional model (type I). On the contrary, Anabaena Cyt c6 is a positively charged protein that exhibits strong electrostatic attractions toward PSI (9, 11) and that reacts with the photosystem following a more complex three-step mechanism (type III). The goal of this study was to elucidate the role played by some specific amino acids of Anabaena Cyt c6 in such an attractive interaction with PSI and to investigate the possible involvement of its hydrophobic north area in the type III reaction mechanism. Mutations of Val-25 indicate that this residue may contribute to the specific topology of the north hydrophobic area of Cyt c6 in its interaction with PSI. Similar conclusions were inferred from mutants at the north pole of eukaryotic plastocyanin (5, 8), in which the fast phase of electron transfer to PSI cannot be detected. This suggests that the mutant proteins (both Cyt c6 and plastocyanin) are unable to reach the optimal orientation required for their redox centers to transfer electrons to PSI. It is interesting to compare the drastic effect induced by mutation of Val-25 to glutamate with mutation to alanine; the severe kinetic phenotype of V25E can be attributed to the presence of a negative charge in the middle of a normally hydrophobic region. The K29H mutant possesses a redox potential value that is 65 mV more
negative than that of WT Cyt c6. This is
probably due to the proximity of Lys-29 to heme propionate 7, in
agreement with previous reports (38). Even though the driving force of electron transfer from K29H to PSI is higher, the kinetic profile of
PSI reduction by the mutant loses the first fast phase, and its
kbim value is about half that of WT Cyt
c6. This can be ascribed in part to
electrostatic effects, as the dependence of
Mutations of Lys-62 and Lys-66 at the positively charged patch of Cyt
c6 demonstrate that this region is responsible
for the attractive electrostatic interactions with PSI. In
Anabaena, the PsaF subunit does not seem to be directly
involved in the interaction of PSI with its donor proteins, as is the
case in Synechocystis (16, 39). Hence, the positive charges
of Anabaena Cyt c6 may interact with
certain negatively charged areas in the PsaA/PsaB heterodimer of PSI to
form a transient electrostatic complex. The surface electrostatic
potential of WT and mutant Cyt c6 was then
calculated. Fig. 7 shows that the WT
molecule has an extensive area of positive potential at its west face,
i.e. close to the hydrophobic patch at the edge of the heme
cleft. Mutants K66E, K62E, and R64E present a reduction in charge of
the positive patch, although the change in the orientation of the
dipole moment is <10°. This is consistent with the kinetic behavior
exhibited by these three mutants, in which the ionic strength
dependence of the interaction with PSI is not so much evident.
It is noteworthy that the effect of such mutations on the reaction rates can be closely correlated to changes in the positive electrostatic potential at the edge of the hydrophobic area. In fact, replacement of Arg-64 (which is located in the basic patch, adjacent to the hydrophobic region) by an acidic residue promotes a drastic reduction in size of the positive patch. Mutation of Lys-66 to glutamate likewise induces a diminution of the basic patch, but it does not alter the electrostatic surface potential at the edge of the hydrophobic area. Mutant D72K is of special relevance as it clearly supports our proposal that the positively charged patch of Cyt c6 is responsible for the interaction with PSI. Replacement of Asp-72 by a positive residue like lysine makes the positive potential region spread out (Fig. 7), thus favoring the attractive interactions with any negatively charged area of PSI. Like WT Cyt c6, D72K is the only mutant that exhibits the fast kinetic phase of PSI reduction. The thermodynamic analysis of PSI reduction by the mutants of Cyt
c6 revealed that all mutations induce changes in
To conclude, the experimental data reported here reveal that in
Anabaena Cyt c6, there are at least
two interaction sites (which would be isofunctional with two similar
areas in plastocyanin) for electron transfer to PSI: (i) a positively
charged area, responsible for the electrostatic interactions forming
the transient complex with the photosystem; and (ii) a hydrophobic
region surrounding the heme pocket, responsible for the formation of
the contact interphase with PSI allowing electrons to go from the heme
iron to P700+. The main difference with respect
to Synechocystis Cyt c6 (18) is found
at the electrostatically charged patch, which explains the differences
in their respective reaction mechanisms of PSI photoreduction (10).
* This work was supported by Dirección General de Investigación Científica y Técnica Grant PB96-1381, European Union Grant ERB-FMRX-CT98-0218, and Junta de Andalucía Grant CVI-0198.The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
2 A. Díaz-Quintana, M. Hervás, J. A. Navarro, and M. A. De la Rosa, unpublished data.
The abbreviations used are: Cyt, cytochrome; PSI, photosystem I; Tricine, N-[2-hydroxy-1,1-bis(hydroxymethyl)ethyl]glycine; WT, wild-type; kbim, bimolecular rate constant for the overall reaction; kinf, diffusion-limited rate constant.
Copyright © 1999 by The American Society for Biochemistry and Molecular Biology, Inc. This article has been cited by other articles:
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