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J Biol Chem, Vol. 274, Issue 50, 35639-35646, December 10, 1999
Anatomy of a Homeoprotein Revealed by the Analysis of Human MODY3
Mutations*
Martine
Vaxillaire §¶,
Amar
Abderrahmani§,
Philippe
Boutin§,
Bernard
Bailleul§,
Philippe
Froguel§,
Moshe
Yaniv , and
Marco
Pontoglio
From the Unité des Virus Oncogènes,
Unité de Recherche Associée 1644, Centre National de la
Recherche Scientifique, Département des Biotechnologies, Institut
Pasteur, 25 rue du Dr Roux, 75724 Paris Cedex 15, France and
§ Institut de Biologie de Lille, Unité Propre de
Recherche et d'Enseignement Supérieur A 8090, Centre National de
la Recherche Scientifique, Institut Pasteur de Lille, 1 rue du
Professeur Calmette, BP 245, 59019 Lille, France
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ABSTRACT |
Hepatocyte nuclear factor 1 (HNF1 ) is an
atypical dimeric homeodomain-containing protein that is expressed in
liver, intestine, stomach, kidney, and pancreas. Mutations in the
HNF1 gene are associated with an autosomal dominant form of
non-insulin-dependent diabetes mellitus called
maturity-onset diabetes of the young (MODY3). More than 80 different
mutations have been identified so far, many of which involve highly
conserved amino acid residues among vertebrate HNF1 . In the present
work, we investigated the molecular mechanisms by which MODY3 mutations
could affect HNF1 function. For this purpose, we analyzed the
properties of 10 mutants resulting in amino acid substitutions or
protein truncation. Some mutants have a reduced protein stability,
whereas others are either defective in the DNA binding or impaired in
their intrinsic trans-activation potential. Three mutants,
characterized by a complete loss of trans-activation, behave as
dominant negatives when transfected with the wild-type protein. These
data define a clear causative relationship between MODY3 mutations and
functional defects in HNF1 trans-activation. In addition, our
analysis sheds new light on the structure of a homeoprotein playing a
key role in pancreatic cell function.
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INTRODUCTION |
Hepatocyte nuclear factor 1 (HNF1 or
LF-B1)1 was initially
characterized as a transcriptional regulator of a large set of hepatic
genes, including albumin, fibrinogen, and
1-antitrypsin (1-3). It is highly conserved among
vertebrates; e.g. there is 94% amino acid identity between
rat and human proteins (4). HNF1 is an atypical homeoprotein that
binds as a dimer to palindromic cis-acting DNA elements related to the
GTTAATnATTAAC consensus sequence. HNF1 and its close homologue
HNF1 (vHNF1 or LF-B3) constitute a unique subfamily of
homeoproteins. The two proteins share strong homologies in the
dimerization and DNA binding domains and can form heterodimers that
bind to the same DNA sequences (5, 6). All the residues essential for
DNA recognition are located in the 281 amino-terminal amino acids of
these proteins. The dimerization domain was mapped to the first 33 amino-terminal amino acids (2, 7). This region can be bound by
dimerization cofactor of HNF1, a small protein of 11 kDa that reduces
the exchange rate of HNF1 molecules in both homodimer and heterodimer
configurations (8). Dimerization cofactor of HNF1 was shown to be
identical to 4 -carbinolamine dehydratase, an enzyme that accelerates
the regeneration of tetrahydrobiopterin (9, 10). HNF1 contacts its
cognate sites via an extra large homeodomain (81 amino acids), consisting of four helices with a loop of 16 amino acids, instead of the usual three, between the helices 2 and 3 (11-13). A conserved sequence of 85 amino acids located between the dimerization domain and
the homeodomain, previously defined as the B domain, is necessary for
high-specificity DNA recognition (7, 14). It was suggested to share a
weak homology with the POU-A box; however this homology does not
comprise the POU domain recognition helix, and it is not spaced
correctly relative to the homeodomain. This region is highly conserved
in both HNF1 and HNF1 of different species, and we will refer to
it as the HNF domain. Finally, the carboxyl-terminal trans-activation
domain extends from amino acid residue 282 to 631, including two
proline-rich (29%) regions and a serine-rich (26%) region. Although
initially assumed to be liver-specific, further studies have shown that
HNF1 is not restricted to hepatocytes but is expressed in epithelial
cells of the intestine, stomach, kidney proximal tubules, and pancreas
(15, 16). The expression of HNF1 in the pancreas raised the
possibility that it may be involved in the transcriptional regulation
of pancreatic genes.
Maturity-onset diabetes of the young (MODY) is a subtype of
non-insulin-dependent diabetes mellitus inherited as an
autosomal dominant genetic disease (17). Affected individuals are
characterized by a primary insulin secretion defect that generally
becomes clinically apparent before 25 years of age, without insulin
resistance (18, 19). MODY is a genetically heterogeneous disease that
can be accounted for by at least three major loci called
MODY1, MODY2, and MODY3. They were
initially mapped by linkage analysis to chromosomes 20q (20), 7p (21),
and 12q (22), respectively. Positional cloning and search for candidate
genes have shown that they correspond to HNF4 (23), glucokinase
(24), and HNF1 (25), respectively. HNF4 belongs to the
steroid-thyroid hormone receptor superfamily of transcription factors
and was shown to be a transcriptional regulator of HNF1 in hepatoma
cell lines (26). Glucokinase is a key enzyme of the pancreatic
glycolytic pathway, known to be a glucose sensor for regulating insulin
secretion in response to glucose (27). The molecular basis of the cell insulin secretion defect in MODY1 and MODY3 is not known. The
clinical course of MODY3 subjects is characterized by a more severe
diabetes than MODY2, requiring oral hypoglycemic agents or insulin
treatment (18, 19). MODY3 represents the most common cause of
early-onset non-insulin-dependent diabetes mellitus. In
fact, it has been estimated to account for 30% of all MODY cases in
France (22). Furthermore, the prevalence of the disease may be
substantially higher than previously thought, given the wide range of
the age of onset and the possible misdiagnosis of patients as
insulin-dependent or non-insulin-dependent
diabetes mellitus. Recent genetic studies of MODY3 kindreds have
revealed a large spectrum of mutations in the HNF1 gene. So far,
>80 different mutations (missense, nonsense, or frameshift) have been
identified in the HNF1 sequence in association with the MODY3
phenotype (28-33). These mutations are localized along the different
functional domains of the protein and involve highly conserved amino
acid residues, suggesting that MODY3 is accounted for by impaired
HNF1 function. However, the exact nature of the molecular defects
and the mechanisms that explain the dominant transmission of the
mutations are unknown. These mutations could generate proteins that
might interfere with the function of the protein encoded by the
wild-type allele from the other homologous chromosome. To investigate
this issue, we analyzed the transcriptional activity of a number of
representative MODY3 mutations. This was done by transient transfection
of native and/or mutant human HNF1 with a target reporter gene. Our
results revealed that most of the mutations strongly affected protein stability. Some of them were defective in their DNA binding capacity or
in trans-activation potential. Finally, several but not all of the
mutants behaved as dominant negative effectors on the wild-type protein.
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EXPERIMENTAL PROCEDURES |
Plasmids and Site-directed Mutagenesis--
In vitro
mutagenesis was carried out on full-length human HNF1 expression
vector (34) from double-stranded 5981-kilobase plasmid DNA using
high-fidelity thermostable Pfu DNA polymerase (QuikChange;
Stratagene, La jolla, CA). The full-length and truncated mutants in the
Rous sarcoma virus (RSV)-driven human HNF1 expression plasmid were
generated by polymerase chain reaction using two oligonucleotides
primers each complementary to opposite strands of the vector. The
oligonucleotides used for mutagenesis were 5'-CGAAGATGGTCAAGTCCTGCCTGCAGCAGCACAATATTCCACAGCGGGAGG-3'
(mutant Y122C);
5'-GCAGCAGCACAATATTCCACAGCAGGAGGTGGTCGATACCAC-3'
(mutant R131Q); 5'-GGCCTCAACCAGTTCCACCTGTCCCAACACC-3'
(mutant S142F); 5'-TCCCATGAAGACGCAGAAGCAGGCCGCCCTGTATACCTGGTACGTC-3'
(mutant R159Q); 5'-CCTGGTATGTCCGCAAGCAGTGAGAGGTGGCGCAGCAGTTC-3'
(mutant R171ter); 5'-GGAGGAACCGTTTCCAGTGGGGCCCAGCATCCCAGCAAATATTGTTCC-3'
(mutant K205Q);
5'-GGTTTGCCAACCGGCACAAAGAAGAAGCTTTCCGGCAC-3'
(mutant R272H); and
5'-CAGGCACAGAGTGTGCTGGTGATCAACAGCATGGGCAG-3'
(mutant P447L). The mutated nucleotides are underlined. To check
the identity of each mutant plasmid by enzymatic digestion, we
introduced in the vicinity of the point mutation some conservative
nucleotide changes, when that was possible, to create or eliminate a
restriction endonuclease site. We checked that nucleotide changes did
not generate rarely used codons.
For the construction of the two frameshift and deletion mutants, sense
(5'-CGTAAGCTTGCGGTAGAGGA-3') and antisense
(5'-AAGTCTAGACTCACTGGAGGCCTGTGTCTGAGGT-3') oligonucleotides
modified to create a HindIII restriction site at
position 20 and an XbaI site at position +1630,
respectively, based on position +1 for the ATG of human HNF1
cDNA, were used as the primer set for the amplification of a
TG-deleted fragment at codons 547-548 and a fragment containing one C
insertion at codon 289. The TG deletion and the in frame stop codon are
in the antisense primer. A second set of oligonucleotides with the C
insertion at position +739 (sense, 5'-TCCCCATCACAGGCAC-3') and position +858 (antisense, 5'-CTGGGGGGGGGCCCG-CTG-3') were used as
internal primers with the first set to yield the P291fsinsC mutated
fragment. The HindIII-XbaI-digested fragments
were inserted downstream of the cytomegalovirus promoter in a
pCDNA3 expression vector. Each of the 10 mutant plasmids was
verified by DNA sequencing of proximal promoter and full-length HNF1
coding sequence to confirm the introduction of the desired mutations
and to exclude other sequence changes.
Cell line, Transient Transfection, and Chloramphenicol
Acetyltransferase (CAT) Assay--
The C33 human epithelial cervical
carcinoma cells (35), which lack endogeneous HNF1 expression, were
cultured and transfected as described previously (34).
For each transfection, a total of 5 µg of DNA were used, including 1 µg of the p 283 reporter plasmid (36), varying amounts of HNF1 expression vectors, and 1 µg of pRSV- -galactosidase construct for normalization of transfection efficiencies. Amounts from
10 ng to 1 µg of wild-type or mutant HNF1 expression vectors were
tested, and the total quantity of plasmids was maintained constant by
adding suitable amounts of a pGEM3 plasmid. 40-48 h after
transfection, the cells were harvested, and total cell extracts were
prepared. CAT and -galactosidase activities were measured as
described previously (37). Each experiment was repeated at least three
to five times with at least two different plasmid preparations.
Electrophoretic Mobility Shift Assays with Nuclear Extracts from
Transfected Cells--
C33 cells (2.5 × 106 cells)
were seeded into 10-cm Petri dishes and transfected with a similar
amount (2.5 µg) of native or mutant HNF1 plasmids. For
electrophoretic mobility shift assay, a cytomegalovirus enhancer-driven
E2TR expression plasmid (38) was co-transfected with HNF1 plasmid in
a similar amount (2.5 µg) as an internal marker for transfection
efficiency as well as reproductibility of nuclear extract preparation.
Nuclear extracts from the transfected cells were prepared from two
10-cm Petri dishes essentially as described previously (34, 39). The
protein concentration was measured by Bradford assay. A single-stranded oligonucleotide (5'-CTTTAGTTAATATTTGACAGTTT-3'), corresponding to the
HNF1 DNA binding element of the rat -fibrinogen promoter, was
end-labeled by using [ -32P]dATP and T4 polynucleotide
kinase and then annealed with an excess (1.5-fold) of cold
complementary oligonucleotide. For detection of E2TR DNA binding
activity, the oligonucleotides were as follows: 36Y1
(5'-CTAGACAACCGATTTCGGTTGT-3') and 36Y2 (5'-CTAGACAACCGAAATCGGTTGT-3'); 36Y1 was end-labeled as described above. Binding reactions were performed as described previously (34).
Western Blot Analysis--
C33 nuclear extracts were prepared
from transfected cells as described above. 20 µg of protein extract
were resolved by 7 or 10% SDS-polyacrylamide gel electrophoresis and
electrotransferred to a nitrocellulose membrane (Bio-Rad). After
control of equal loading by Ponceau staining, the membranes were
incubated in phosphate-buffered saline (PBS) containing 10% dried milk
for 30 min, and subsequently washed twice for 10 min in PBS
supplemented with 0.1% Tween 20 and once for 10 min in PBS. The
membranes were then incubated with a 1:1000 dilution of polyclonal
rabbit anti-HNF1 antibody, rHNt-283, as described previously (40).
Metabolic Labeling of Transiently Transfected Cells and
Immunoprecipitation--
C33 cells were transfected as described above
with 10 µg of native or mutant (Y122C and R159Q) HNF1 plasmids. To
analyze protein stability, 40-48 h after transfection the cells were
pulse-labeled for 15 min with 35S-containing amino acids
(cysteine and methionine; Tran35S-label, ICN) and chased
for various lengths of time in the presence of excess nonradioactive
cysteine and methionine added to the Dulbecco's modified Eagle's
medium plus 3% dialyzed fetal calf serum culture medium. The cells
were washed twice with ice-cold PBS, and then all subsequent steps were
performed at 4 °C. The cells were lysed in HNB buffer and 1%
Nonidet P-40 as described above for nuclear extract preparation (39).
The nuclei were resuspended in 30 µl of cold RB buffer (60 mM KCl, 15 mM NaCl, 15 mM HEPES, pH
7.5, 2 mM EDTA, 0.5 mM EGTA, 0.15 mM spermine, 0.5 mM spermidine, 1 mM -mercaptoethanol, 0.2 mM
phenylmethylsulfonyl fluoride, 2 µg/ml bastatin, 2 µg/ml aprotinin,
2 µg/ml pepstatin) and then treated with 3 µl of DNaseI (10 units/µl) to reduce the viscosity by incubating for 5 min on ice with
the enzyme in the presence of 4.5 mM MgCl2.
Then the digestion of DNA was stopped by adding 6 µl of 166 mM EDTA, and the nuclear extracts were resuspended in 120 µl of radioimmunoprecipitation assay buffer (150 mM NaCl, 1.0% Nonidet P-40, 0.5% deoxycholate, 0.1% SDS, 50 mM
Tris, pH 8.0) and subjected to immunoprecipitation with saturating
amounts (2.5 µl) of rHNt-283 antibody according to standard
procedures (41).
Immunodetection in Transfected Cells--
C33 cells were grown
and transfected onto 18-mm glass coverslips as described above. To
assess the cellular localization of each mutant and wild-type HNF1
protein, we performed indirect immunofluorescence on the fixed cells.
The cells on the coverslip were fixed for 20 min in 4%
paraformaldehyde at room temperature, rinsed in PBS, and then
permeabilized with 1% Triton X-100, rinsed again in PBS, and incubated
with the primary anti-HNF1 antibody, rHNt-283, in the same
conditions as those described for the immunoblot analysis. The
coverslips were then incubated with a fluorescein-coupled anti-rabbit
antibody (Amersham Pharmacia Biotech) in PBS supplemented with 0.1%
Tween 20 and 10% FCS, rinsed twice in PBS supplemented with 0.1%
Tween 20 and then in PBS, and mounted in antifade medium for viewing on
a Zeiss Axiophot epifluorescence microscope.
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RESULTS |
Construction of HNF1 Mutants--
Based on previous structural
and functional studies of HNF1 and HNF1 , predictions could be
made about the activity of some of the MODY3 mutations. It has been
shown that deletions of the activation domain generate proteins that
can still dimerize, bind DNA, and behave as dominant negative mutants
on the activity of the normal protein (34, 42). However, the properties
of point mutations were difficult to predict, because no single amino
acid substitution has been previously analyzed. For this reason, we chose to evaluate the properties of 10 mutants in different domains of
HNF1 (Fig. 1). Seven of them were
point mutations resulting in amino acid substitution (Y122C, R131Q,
S142F, R159Q, K205Q, R272H, and P447L); one was a nonsense mutation
(R171ter), and two were frameshift mutations (P291fsinsC/ter and
T547E548fsdelTG/ter) resulting in protein truncation. These mutations
are responsible for the MODY3 phenotype in different families. The
seven missense mutants and the amino-terminal truncated protein
(R171ter) were introduced into the human HNF1 cDNA sequence and
cloned into an expression vector under the control of the Rous sarcoma
virus long terminal repeat. The two carboxyl-terminal frameshift
mutations of the same cDNA were introduced in a pCDNA3
expression vector under the control of a cytomegalovirus promoter. The
constructs were sequenced in their promoter and coding portions to
ensure that additional mutations were not introduced during the
mutagenesis step.

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Fig. 1.
Schematic representation of the HNF1
functional domains. The positions of the 10 HNF1 mutations
analyzed are indicated at the bottom. ter, stop
codon; fs, frameshift mutation, both resulting in protein
truncation. The filled arrows show missense mutations, and
open arrows show truncation mutations.
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Subcellular Localization of HNF1 Mutants--
To investigate
whether HNF1 mutations affected nuclear translocation, we
transfected the different mutants in C33 cells and monitored the
subcellular localization by indirect immunofluorescence. Almost all of
the mutant proteins tested gave a nuclear signal with antibodies
prepared against the amino-terminal half of HNF1 , showing that they
accumulate in the nucleus (Fig. 2).
For some of them (Y122C, S142F, R272H, and P291fsinsC(ter)),
in a certain percentage of transfected cells, a faint signal was
also detected in the cytoplasm. R171ter was, on the contrary, the only
mutant that was abundantly localized both in the cytoplasm and in the nucleus. These results suggest that the nuclear import is normally operating for most of the mutants tested.

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Fig. 2.
Subcellular localization. Subcellular
localization of HNF1 mutants was monitored by indirect
immunofluorescence on fixed, transiently transfected C33 cells.
A, polyclonal anti-HNF1 immunoreactive proteins were
detected with fluorescein isothiocyanate-labeled goat anti-rabbit
immunoglobulin secondary reagent. B, blue nuclear
fluorescence from the 4', 6-diamidino-2-phenylindole complexed with
DNA. C, superposition of fluorescein isothiocyanate
(green) and 4', 6-diamidino-2-phenylindole (electronically
converted to red) stainings. D, phase-contrast
images of the immunostained cells.
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HNF1 Mutants Are Expressed at Different Levels--
To evaluate
a possible defect in protein stability, we first evaluated the
expression levels of the mutant proteins in the transfected cells by
Western blot analysis. As shown in Fig.
3A, protein levels of mutants
Y122C, R159Q, K205Q, and P447L were reduced compared with the wild
type. Conversely, mutants R131Q, S142F, and R272H retained a relatively
normal expression level. In agreement with previous studies, HNF1
protein migrates as a slightly diffuse band with an apparent molecular
mass ranging approximately between 92 and 98 kDa (40). Strikingly,
P447L was the only mutant that reproducibly appeared as a sharper band. A specific HNF1 fragment was detected with an amino-terminal anti-HNF1 antibody for the mutant R171ter as a weak band migrating with an apparent molecular mass <30 kDa. Finally, mutants P291fsinsC and T547E548fsdelTG were overproduced relative to the wild-type protein.

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Fig. 3.
Protein expression and DNA binding of the
different mutants. A, Western blot analysis and
immunodetection of HNF1 wild-type and mutant proteins in nuclear
extracts from transfected C33 cells. An equal quantity of nuclear
proteins was analyzed as detailed under "Experimental Procedures."
B, gel shift analysis of HNF1 mutants with the
-fibrinogen HNF1 binding site (see "Experimental Procedures" for
details). C, gel shift analysis with an E2 DNA binding site
for normalization of transfection efficiency and quality of nuclear
extract preparation. Note that two retarded bands are usually seen with
this papillomavirus-derived E2TR transcriptional regulator.
Left and right panels derive from two independent
experiments using RSV long terminal repeat and cytomegalovirus
expression vectors, respectively. The data shown represent a typical
experiment that was reproduced several times.
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To test whether the reduced protein levels obtained for Y122C and R159Q
resulted from decreased stability of these mutant proteins, we
performed pulse-chase experiments in transfected C33 cells followed by
immunoprecipitation of mutant proteins. Upon very short labeling times
(15 min) and before the chase, the protein level of both mutants was
only partially reduced compared with the wild-type protein, indicating
that the dramatically reduced protein levels observed at steady state
could not be explained by a possible defective protein synthesis.
Indeed, after the chase, the decline of both mutant proteins was much
more pronounced when compared with that of the wild-type protein (Fig.
4 and results not shown). From these
data, we have estimated that the wild-type HNF1 half-life in C33
cells is ~12 h, whereas for the mutant proteins it is only 2.5 h.

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Fig. 4.
Stability of Y122C mutant compared with
wild-type HNF1 protein. C33 cells were
labeled with [35S]methionine and cysteine for 15 min
(0) and pulse-chased for various lengths of time (45, 90, and 180 min) in the presence of excess
nonradioactive methionine and cysteine. Samples were immunoprecipitated
under normal stringency conditions using polyclonal anti-HNF1
antibody, rHNt283, and subjected to SDS-polyacrylamide gel
electrophoresis. Nuclear extracts prepared from untransfected C33 cells
were immunoprecipitated in the same conditions than for those prepared
from cells transiently transfected with wild-type or mutant
HNF1 -encoding plasmid and used as negative control
(Mock).
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Several HNF1 Mutants Are Defective in DNA Binding--
Next, we
performed electrophoretic mobility shift assays to assess the specific
DNA binding activity of the different mutants. As shown in Fig.
3B, specific DNA binding activity was detected for mutants
Y122C, R131Q, R159Q, K205Q, R272H, and P447L. The first five proteins
showed the same mobility as that obtained with the wild-type HNF1
protein. Conversely, mutant P447L showed a slightly different migration
pattern characterized by a band that migrated reproducibly slightly
faster than the wild-type HNF1 band. The two carboxyl-terminal
deletion mutants clearly showed a strong increase in the DNA binding
activity that reflected their increased expression level. These
proteins showed a faster mobility of the retarded complexes as
previously reported for carboxyl-terminal truncation mutants and were
able to heterodimerize with a cotransfected full-length wild-type
protein (Ref. 43 and data not shown). As expected, no binding activity
was detected for mutant R171ter. Surprisingly, S142F lacked any DNA
binding activity. To monitor the transfection efficiency and the
quality of the nuclear extract preparation, we included in the
transfection the papillomavirus-encoded E2TR protein expression vector
(38). Fig. 3C shows that E2TR DNA binding activity was
equally detected in each transfection. Comparison of the intensity of
the retarded bands relative to the level of expressed proteins
demonstrated that the two carboxyl-terminal truncated mutants bound DNA
at least as well as normal HNF1 . On the contrary, mutant R272H had reduced DNA binding activity when compared with the steady-state protein levels. Finally, Y122C, R159Q, K205Q, and P447L had very low
binding activities compatible with their low level of expression, whereas R131Q showed only a small decrease in DNA binding and expression level.
Trans-activation Potential of HNF1 Mutants--
To assess the
trans-activation potential of the HNF1 mutants compared with that of
the native protein, we transfected increasing amounts of the HNF1
expression vector together with a CAT reporter gene under the control
of the chimeric 28 promoter containing three HNF1 binding sites
upstream of the rat -fibrinogen TATA box sequence (construct
p 283; Ref. 36). Transfections were performed in the
human epithelial C33 cells, which lack any endogeneous HNF1 expression.
In agreement with previous studies, HNF1 activated this reporter
plasmid up to 50-70-fold. No appreciable effect (<2-fold) was
observed by further addition of dimerization cofactor of HNF1-encoding
plasmid (data not shown). The capacity of increasing amounts of mutant
HNF1 expression vectors to activate the reporter was compared with
the wild-type protein in the same experiment. Fig.
5 shows the different patterns of
trans-activation we obtained for the 10 mutants analyzed. The profiles
shown are representative of three to five experiments and reveal either
markedly decreased activity, particularly at low input of transfected
HNF1 encoding plasmid, or no transcriptional activity. The 10 mutants can be grouped as follows.

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Fig. 5.
Transcriptional activation by
HNF1 mutants. The trans-activation
profiles obtained for each of the 10 mutants analyzed are shown as a
mean ± S.E. from three to five independent experiments.
Expression vectors for the wild-type and mutant proteins were
cotransfected with the reporter construct p( 28)3 CAT
containing three HNF1 binding sites upstream of the -fibrinogen
minimal promoter. RSV- -galactosidase was included as a reference
plasmid. The -galactosidase-normalized CAT activity is expressed as
-fold activation (y axis). Trans-activations with expression
vector encoding for wild type (WT, diamonds) or mutant
(squares) are plotted against the amount (ng) of the vector
transfected into C33 cells (x axis).
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Class I: Trans-activation Defect Brought about by Reduced Mutant
Protein Stability Coupled with a Possible Decrease in DNA
Binding--
Y122C activated transcription of the CAT reporter gene at
significantly lower levels than those obtained with the wild-type HNF1 . This was particularly true in the lower range of the
transfected plasmid (10-200 ng). Activation levels similar to those of
the wild-type protein (65-70-fold) were obtained when 1 µg of mutant DNA was transfected. However, although the trans-activation by the
wild-type protein approached a plateau at 200 ng of plasmid in most
experiments, a 5-fold excess of mutant protein-encoding plasmid was
required to reach this level of activity. Comparable profiles were
obtained for mutants R131Q, R159Q, K205Q, and R272H. For mutants Y122C,
R159Q, and K205Q, the impaired trans-activation potential can be
correlated with decreased mutant protein accumulation. In contrast,
mutant R272H showed a decreased intrinsic trans-activation brought
about by a decrease in specific DNA binding, whereas the protein
stability was only marginally affected.
Class II: Very Low or No Activity--
S142F mutant displayed no
transcriptional activity below 200 ng of plasmid transfected and very
weak activation levels when 1 µg of plasmid was transfected compared
with the wild-type activation level (11 ± 3.5- versus
65 ± 19.7-fold, mean ± S.E.; n = 4). A similar profile was obtained for R171ter mutant, as could be expected. Surprisingly, P447L, a point mutation in the trans-activation domain,
had almost no trans-activation function, even when 1 µg of DNA was
transfected. As discussed below, mutants P291fsinsC(ter) and
T547E548fsdelTG(ter) also belong to this class.
The residual transcriptional activity of the different mutants can be
compared by considering the trans-activation efficiency obtained in the
linear range of the dose-response curve, namely when 50 ng of plasmid
were transfected. As shown in Fig. 5, mutants S142F, R171ter, P447L,
P291fsinsC(ter), and T547E548fsdelTG(ter) exhibited very weak
activation capacities. On the other hand, only two mutants showed a
trans-activation capacity >20% of that of the wild-type protein.
These mutants were Y122C and R131Q with a trans-activation capacity of
22 ± 2% and 52 ± 6%, respectively. Three others, K205Q,
R272H, and R159Q exhibited ~10% of the wild-type activity.
Several Mutant Proteins Can Affect the Activity of the Wild-type
Protein--
We next examined which of the mutations may have
generated dominant negative effectors. To this end, we cotransfected a
low constant amount (50 ng) of the wild-type-encoding plasmid with increasing amounts of mutant expression vector (50 ng to 1 µg). Class
I mutants, i.e. Y122C, R131Q, R159Q, K205Q, and R272H, did not interfere with the wild-type HNF1 activity but rather increased slightly the reporter activity (see Fig.
6A for an example). The mutants grouped in class II could be further subdivided into two subgroups. In the first, which we called IIa, increasing amounts of
plasmid mutants, including S142F and R171ter, only marginally changed
the activity of the cotransfected wild-type protein (Fig. 6B
and results not shown). On the contrary, mutants belonging to subgroup
IIb decreased the activity of the coexpressed normal protein almost to
baseline. These included P447L and the two carboxyl-terminal frameshift
mutants, P291fsinsC(ter) and T547E548fsdelTG(ter) (see Fig.
6C for an example).

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Fig. 6.
Effect of mutant proteins on wild-type
protein activity. The three different profiles of interference
with wild-type activity are illustrated for mutants Y122C (class I),
S142F (class IIa), and P447L (class IIb). Expression vectors were
cotransfected with the reporter construct p( 28)3
containing three HNF1 binding sites. The -galactosidase-normalized
CAT activity is expressed as -fold activation (y axis).
Trans-activations with expression vector encoding for wild type
(WT, diamonds) or mutant (squares) are plotted
against the amount (ng) of the vector transfected into C33 cells
(x axis). Trans-activations with a constant amount (50 ng)
of wild-type and increasing amounts of mutant vector are indicated by
triangles. The arrows indicate the values for
equimolar amounts of wild-type and mutant plasmids when cotransfected.
The profiles shown are representative of three to five experiments.
Mutants R131Q, R159Q, K205Q, and R272H behaved similarly to Y122C
(A); mutant R171(ter) behaved similarly to S142F
(B); and mutants P291fsinsC(ter) and T547E548fsdelTG(ter)
behaved similarly to P447L (C).
|
|
 |
DISCUSSION |
Transcriptional activation by MODY3 mutants--
MODY3 mutations
in HNF1 are probably one of the largest set of known mutations
affecting a homeoprotein. In fact, >80 different mutations have been
identified so far in the human HNF1 gene. Most of the mutations
affect amino acid residues that have been conserved during evolution in
all HNF1 and HNF1 genes. Missense mutations concern all the
functional domains of HNF1; however, the highest mutation density
occurs in the HNF and homeodomains (Table
I). This suggests that protein domains
that are involved in DNA binding are more sensitive to single amino
acid changes than the trans-activation domain. The present work aimed
to investigate how MODY3 mutations could affect HNF1 function. Ten
mutants located in different functional domains of HNF1 have been
monitored for nuclear localization, protein stability, DNA binding, and
transcriptional activation.
View this table:
[in this window]
[in a new window]
|
Table I
Density of MODY3/HNF1 mutations in the different functional domains
of the protein
A total of 51 single amino acid substitutions were considered. For each
domain, the mutation density is expressed as the number of amino acid
changes for 100 amino acid residues.
|
|
View this table:
[in this window]
[in a new window]
|
Table II
Biological properties of the HNF1 mutants
Class distribution, transcriptional activation, expression level, and
estimated specific activity for the 10 MODY3/HNF1 mutants. The
expression levels were estimated from the Western blot shown in Fig. 3,
and the specific activity represents the fold of transactivation with
limiting plasmid concentration divided by the protein expression level.
|
|
Our results demonstrate that all the expression vectors coding for
MODY3 mutant proteins present a defective HNF1 transcriptional function in transient transfection studies. In this respect, we have
shown that some mutants have reduced protein stability, whereas others
are either defective in the DNA binding or impaired in their intrinsic
trans-activation potential. Three mutants, characterized by a complete
loss of trans-activation, have also acquired a dominant negative
potential on the wild-type protein in the trans-activation assay (Table
II).
Involvement of the HNF Domain and Homeobox Domain in DNA
Binding--
Among the different point mutants in the HNF domain, the
S142F mutant is the only one that totally failed to activate
transcription, presumably because it failed to bind DNA. The HNF domain
was shown to enhance sequence-specific DNA binding and to mediate the
formation of DNA-stabilized protein dimers (14). In fact, the HNF
domain seems to impose an oriented 2-fold symmetry on the dimer
molecule, thus defining a reciprocal orientation of the two
homeodomains in the bound dimer. In this way, the HNF region might
increase the binding site specificity by permitting the recognition of only those DNA sequences containing properly oriented half-sites. In
addition, the HNF domain could interact with the natural cognate DNA
sequence, for example, with the strictly conserved GT residues immediately 5' to the TAAT recognition sequence. Indeed, UV
cross-linking experiments suggest that the HNF domain may be in close
proximity to the target DNA.2
From this, we speculate that the amino acid change in the S142F mutant
could have disturbed a cooperative interaction between the HNF domain
and the homeodomain of HNF1 . The present data further reinforce the
role of the 85 amino acids containing the HNF domain in high-affinity
specific DNA binding. Because the homology of this domain with the
POU-specific domain is not significant, we suggest that it be
considered as a new conserved motif outside the homeodomain. It will be
interesting to discover new atypical homeogenes containing this HNF
motif and to search for its possible occurrence in less developed organisms.
Mutant R272H activates only weakly, compared with its expression level.
It seems that R272 lies at a critical position, in helix 3 of the
homeodomain, which is part of the WFXNXR motif found to be strictly conserved among all known homeodomain sequences. In conclusion, both the homeodomain and the HNF domain contribute to
the strength of DNA binding by HNF1 and are crucial in
vivo. Such an interdependence could influence the selection of
target sites by homeobox proteins.
Negative Dominance of Some Mutant Proteins--
It is worth
nothing that the three mutants that have lost the trans-activation
potential but that still were able to bind DNA efficiently and dimerize
had a strong dominant negative effect in the co-transfection and
trans-activation assay. The dominant negative effect, in these cases,
is very likely attributable to the formation of a heterodimeric
inactive complex. Particularly interesting is the case of the mutant
T547E548fsdelTG, which results in a carboxyl-terminal deletion of the
last 85 amino acid residues. Previous studies have shown that
progressive unidirectional deletions of the carboxyl-terminal domain
resulted in a gradual decrease in the trans-activation potential of the
protein. In fact, deletion mutants of the last 62 and 114 amino acid
residues retained a specific activity of 75 and 55% relative to the
intact protein, respectively (43). However, the mutant T547E548fsdelTG
is characterized by a much more drastic effect; the mutation not only
abolished trans-activation but also gave rise to a dominant negative
protein. The carboxyl-terminal domain of this mutant contains four
unrelated additional amino acids introduced by the frameshift, which
may cause the protein to adopt an inactive conformation. Alternatively, HNF1 residual activity may be more sensitive to the position of
protein truncation than previously thought.
A surprising result came from mutant P447L, which fails to activate
transcription, acts as a dominant negative effector, and shows a
particular migration pattern in both the electrophoretic mobility shift
assay and Western blot analysis. It seems that the amino acid
substitution from proline to leucine leads to an important
conformational change of the protein. Proline has a major effect on
protein structure, because the nitrogen atom of the amino group is
incorporated into a ring. The peptidylprolyl amide bond can exist in
either cis or trans stereochemical
configurations, so that a proline residue disrupts the usual
organization of the backbone of a polypeptide chain by introducing a
constraint in the direction of the chain. It is interesting to note
that another proline residue changed into leucine at position 519 in
the trans-activation domain of HNF1 has been reported as a mutation
responsible for MODY3 (28). Somewhat similar trans-dominant negative
effects have been reported for some mutants in the
ligand-dependent trans-activation domain, AF2, of various
steroid hormone receptors. A point mutant in the AF2 progesterone
receptor region, PRBE911A, has been shown to inhibit trans-activation
by a cotransfected wild-type receptor without influencing hormone and
DNA binding affinities (44). A carboxyl-terminal deleted form of
glucocorticoid receptor, called Gr , has also been claimed to exhibit
a dominant negative effect (45). It is possible that the P447L mutant,
via the heterodimerization with the wild-type protein, gives rise to a
complex that is unable to activate transcription. The aberrant
conformation of such a complex could prevent protein contacts essential
for transcriptional activation. All these observations suggest that the
function of the trans-activation domain of HNF1 could rely on its
dimeric structure.
HNF1 Mutations and MODY3 Phenotype--
The first two classes
of mutants (I and IIa) showed decreased and no trans-activation,
respectively, whereas class IIb mutants showed strongly decreased
trans-activation and behaved as dominant negative mutants. These
different behaviors should predict important consequences on the
clinical course of the pancreatic dysfunction of individuals carrying
distinct types of mutations. MODY3 patients heterozygous for mutations
in HNF1 belonging to the last class of mutants (IIb) should have a
more pronounced reduction of HNF1 activity compared with patients
carrying mutations of class I or IIa. This should be particularly true
for carriers of the two carboxyl-terminal truncated proteins that
accumulated to levels much higher than that of the wild-type protein
and readily inhibited the activity of the wild-type protein. However,
the analysis of the clinical data did not show any clear correlation
between the severity of the phenotype of MODY3 patients and the nature
of their mutations.3 Such an
apparent paradox is further complicated by the observation that MODY3
is inherited as a dominant trait in humans, whereas in mice, the same
type of pancreatic dysfunction is inherited as a recessive trait. In
fact, a null mutation in the murine HNF1 gene (46) gives rise to a
severe insulin secretion defect only in homozygous animals, whereas the
heterozygous mice are normoglycemic and have a normal glucose tolerance
(47). We should bear in mind that the affected mice are nullizygous,
because the mutation consists of a deletion that prevents the synthesis
of any trace of HNF1 protein. How can we explain these
discrepancies? The lack of any correlation between the clinical data
and the dominant negative nature of the mutations would suggest that a
unique mechanism is at the basis of the MODY3 phenotype.
One possibility is that all MODY3 mutant proteins behave in reality as
dominant negative effectors in MODY3 patients. In this case, however,
we have to assume that transient transfection experiments cannot
reproduce the exact conditions occurring in the pancreatic cells.
We have to postulate that even in the presence of minimal amount of
transfecting plasmid, a saturating intranuclear level of normal HNF1
protein will be produced in the successfully transfected cells. Mutant
proteins that are either unstable or unable to bind DNA will not
prevent the wild-type protein from binding to the test promoter. Only
mutants that generate stable proteins that bind DNA without activating
transcription will behave as dominant negative in ex vivo
assays if this hypothesis is correct.
Alternatively, one could suggest that the negative dominance is not the
mechanism at the basis of the dominant inheritance of MODY3. In this
case we should postulate that HNF1 protein levels are in excess in
mice but not in humans. If this is true, in a MODY3 patient, when the
increased demand for cell function occurs with age, the decrease
HNF1 activity might become insufficient and thus elicit the onset of
diabetes. If this reasoning is correct, all the MODY3 mutations studied
might in fact be merely loss of function mutations resulting in
haploinsufficiency. Such a hypothesis is compatible with the
identification of promoter mutations that decrease HNF1 mRNA
synthesis and with a truncation mutation at the seventh codon
(33).
The discrepancy in the inheritance of the traits between mouse and
human is reminiscent of what has been observed for HNF4 /MODY1, HoxD13 (48), and Brn-3.1/Pou4f3 (49). In these cases, the traits are
transmitted in a dominant fashion in humans, whereas they are in a
recessive manner in mice. The analysis of the HNF4 (Q268X) mutation
showed a loss of function effect (50), whereas HNF4 heterozygous
mice showed no signs of diabetes and exhibited normal glucose
tolerance. Conversely, the analysis of HoxD13 and Brn-3.1/Pou revealed
a dominant negative effect of the mutated proteins.
Further experiments that can distinguish between the two alternative
explanations, loss of function resulting in haploinsufficiency or
formation of a dominant negative protein, should await the reconstruction of knock-in mice with different types of MODY3 mutations. In this case, one will be able to follow the level of
HNF1 activity and hopefully the transcription of target genes with age.
Altogether, our data define a clear causative association between MODY3
mutations and functional defects in HNF1 -dependent trans-activation. This work also sheds new light on the role played by
specific amino acid residues in the function of a homeoprotein that is
involved in the maintenance of normal pancreatic cell function.
 |
ACKNOWLEDGEMENTS |
We are indebted to Tanguy Chouard for the
rHNt-283 antibody. We thank Antonia Doyen for advice on cell culture
and technical assistance, Armelle Lengronne for her help in
transfection experiments, and Françoise Thierry for the gift of
E2TR-encoding plasmid. We also thank all the other members of the Virus
Oncogenes Unit and are very grateful to Jonathan Weitzman for
critically reading the manuscript.
 |
FOOTNOTES |
*
The costs of publication of this
article were defrayed in part by the
payment of page charges. The article
must therefore be hereby marked
"advertisement" in
accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
¶
Present address: Institut de Biologie de Lille, Unité
Propre de Recherche et d'Enseignement Supérieur A 8090, Centre
National de la Recherche Scientifique, Institut Pasteur de Lille, 1 rue du Professeur Calmette, BP 245, 59019 Lille, France.
To whom correspondence should be addressed: Unité des
Virus Oncogènes, Unité de Recherche Associée 1644, Centre National de la Recherche Scientifique, Département des
Biotechnologies, Institut Pasteur, 25 rue du Dr Roux, 75724 Paris Cedex
15, France. Tel.: 33-1-45-68-85-12; Fax: 33-1-40-61-30-33; E-mail:
yaniv@pasteur.fr.
2
T. Chouard, unpublished observations.
3
M. Vaxillaire, unpublished observations.
 |
ABBREVIATIONS |
The abbreviations used are:
HNF1 , hepatocyte
nuclear factor 1 ;
MODY, maturity-onset diabetes of the young;
RSV, Rous sarcoma virus;
CAT, chloramphenicol acetyltransferase;
PBS, phosphate-buffered saline.
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