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J Biol Chem, Vol. 275, Issue 17, 12463-12469, April 28, 2000
From the Research Institute for Food Science, Kyoto University,
Uji, Kyoto 611 0011, Japan
Iron release process of ovotransferrin N-lobe
(N-oTf) to anion/chelators has been resolved using kinetic and
mechanistic approach. The iron release kinetics of N-oTf were measured
at the endosomal pH of 5.6 with three different anions such as
nitrilotriacetate, pyrophosphate, and sulfate using stopped flow
spectrofluorimetric method, all yielding clear biphasic progress
curves. The two observed rate constants and the corresponding
amplitudes obtained from the double exponential curve fit to the
biphasic curves varied depending on the type and concentration of
anions. Several possible models for the iron release kinetic mechanism
were examined on the basis of a newly introduced quantitative equation.
Results from the curve fitting analyses were consistent with a dual
pathway mechanism that includes the competitive iron release from two different protein states, namely, X and Y, with the respective first
order rate constants of K1 and
K2 (X, domain closed holo N-oTf; Y, anion
induced different conformer of holo N-oTf). The reversible
interconversions of X to Y and Y to X are driven by the second order
rate constant k3 and the first order rate
constant K4, respectively. The obtained rate
constants were greatly variable for the three anions depending on the
synergistic or nonsynergistic nature. In the light of the anion-binding
sites of N-oTf located crystallographically, the compatible mechanistic
model that includes competitive anion binding to the iron coordination
sites and to a specific anion site is suggested for the dual pathway
iron release mechanism.
Transferrins are a class of bilobal proteins that bind, transport,
and release various metals such as iron, aluminum, copper, and bismuth
of which the key interest is to study the uptake and release of iron by
transferrins because it is abundant and also plays a significant role
in many biological processes (1, 2). Each lobe of transferrin binds one
Fe3+ ion in the interdomain cleft in presence of a
synergistic anion (biologically, carbonate) with similar chemistry but
with different affinity (3, 4). Although the main core of structure is similar in both the lobes (N and C), the chemistry is remarkably dissimilar toward the interaction of nonsynergistic anions (5), disulfide bridges (6), conformational and thermal stability (7, 8), and
iron binding and release characteristics (9-13). Physiologically, low
molecular weight chelators/anions play a vital role in the iron
exchange reactions with transferrins, and the rate of iron release from
the N-lobe of transferrins is more facile compared with its
counterpart, either in the full-length molecule or in the independent
half molecule (9, 14). The molecular details of origin of such
differences are poorly understood. However, a significant difference
has been the dilysine trigger in case of N-lobe and kinetically
significant anion-binding site in C-lobe, each of which are proposed to
be absent in the respective counterparts (13, 15, 16). Addition of
simple nonsynergistic anions such as chloride accelerates the chelator
mediated iron release from C-lobe but retards release from N-lobe
either in full-length structure or in the independent lobe (12, 13, 16,
17). Anion effect was also shown to vary with pH-dependent conformational change in N-hTf where chloride retards iron release at
high pH but accelerates at low pH (18). The exact location of
nonsynergistic anion-binding site(s) on either lobe is/are not fully
known. A recent site-directed mutagenesis study shows that the
Lys296 of the dilysine pair,
Lys206-Lys296, is one of the anion-binding site
residues on N-hTf1 (19). The
mechanism by which anions regulate iron release in both the lobes is
not clearly understood.
Considerable interest has been focused to delineate the mechanism of
iron release from transferrins in vitro, mainly by using small molecular weight chelators (9, 11-14, 16-20), and, rarely, by
using receptors (21-23). Because the iron release mechanism seems to
be very complex with diferric transferrin, studies are now being
undertaken using either independent lobes or selectively iron-loaded
lobe on the full-length transferrin (12-26). The iron-binding site on
each lobe of transferrin involves two tyrosine residues, one each of
aspartic acid and histidine residues. The remaining two ionic
coordinates of iron are shared by a synergistic bicarbonate anion that
anchors using an arginine residue of the protein. Hence, recently a
number of iron release studies are focused using mutants of these
functional sites of transferrin or its isolated lobes to delineate the
mechanism (13, 17, 22, 23, 25). The concept of iron release mechanism
proposed by Bates and co-workers (27, 28) involving a "mixed
ligand" intermediate between "domain closed" holo form and
"domain opened" apo form is widely accepted, where the
rate-limiting step is the conformational change because of anion
binding followed by the rapid removal of bound iron. A recent report
emphasizes the slow protonation of iron-binding residues of
ovotransferrin for the iron release process at acidic pH in the absence
of anionic chelators (29).
Apart from the location of nonsynergistic anion-binding sites, there is
a lacuna in the quantitative evaluation of the kinetic data with a
suitable model applicable for different anions. The kinetic
inequivalence between the two lobes in addition to nonsynergistic anion
requirement and inter-lobe interaction makes the process much more
complex in diferric transferrins. At large, the kinetic process of iron
release was evaluated by using observed rate constant (kobs), which is obtained by single exponential
curve fit analysis of the raw data (11-14, 16-26). Several anion
systems have shown saturation kinetics of kobs
values with respect to ligand concentration (9, 17, 20, 25); some have
first order kinetics (25, 30), and several others appear to follow both
saturation and first order kinetics (12, 25, 26). The saturation
kinetics (hyperbolic) obtained with N-hTf showed first order kinetics
(linear) for its R124A mutant for the same anion (25). However from the kinetic analysis methods used the origin of such differential behavior
was not clear. In this present complexity iron release kinetic
mechanism of N-oTf was studied using three anions of different chemical
nature: pyrophosphate, a chelator and nonsynergistic anion; NTA, a
chelator and synergistic anion; and sulfate, a nonchelator and
nonsynergistic anion. We have opted for isolated N-oTf because the
solution and crystallographic structural details of iron binding and
the intermediate complex of iron uptake are reported from this
laboratory (15, 31-33). The kinetic data was obtained using the
stopped flow spectrofluorimetric method at the endosomal pH of 5.6 and
single anion system at a time, for the iron release process of three
different anions. Several kinetic models were analyzed by the newly
introduced method to obtain the rate constants for the quantitative
evaluation of the iron release kinetics. The crystallographic structure
of nonsynergistic anion bound apo N-oTf (33) along with the holo (15)
and iron uptake intermediate (32) structures of N-oTf were critically
analyzed to derive a mechanistic model compatible with the dual pathway
kinetic mechanism.
Preparation of Protein--
N-oTf was prepared by the
established procedure (34). The protein concentration was measured in
the apo form, and iron-bound holo form was prepared freshly in 100 mM Hepes, pH 7.4, using (Fe3+-NTA) complex as
the iron donor and a large excess of bicarbonate as the synergistic
anion to replace bound NTA. Holo N-oTf was then equilibrated to 50 mM Mes, pH 5.6, by dialysis, and the bound iron was
confirmed spectrophotometrically to retain a 1:1 molar ratio with the
protein. An N-oTf concentration of 5.5 µM was used in all
the iron release experiments.
Preparation of Anions--
Guaranteed grade of chemicals
(pyrophosphoric acid from Wako Pure Chemicals; NTA and
Na2SO4 from Nacalai Tesque), nitric acid-washed glassware and double distilled, deionized, and 40 µM
filtered water were used. Extreme care was taken to avoid any metal
contamination or alteration of pH in all the solutions. All of the
anion stock solutions were prepared freshly just before use in 50 mM Mes, and the pH was adjusted to 5.60 using NaOH and
readjusted to 5.60 for minor changes, if any, upon dilution of anion
stock solutions.
Iron Release Experiments--
The principle of nonradiative
resonance energy transfer from excited aromatic chromophores to the
visible charge transfer band of bound iron in transferrin (35), which
was successfully used to measure the iron release kinetics in
transferrins, was adopted for our studies with minor modifications (12,
21). The kinetic data was precisely obtained by 1:1 sample mixing on a
SX.18MV stopped flow reaction analyzer (Applied Photophysics Ltd., UK),
which has the dead time of 4 ms. The excitation and emission
wavelengths, 288 and 330 nm, respectively, were set on two different
monochromators with a bandpass of 9.3 nm. A photomultiplier voltage of
600 mV with the reaction temperature of 30 ± 0.1 °C maintained
using an external water bath and 50 mM Mes, pH 5.6, because
the reaction buffer did not contribute to iron release from holo N-oTf
in the absence of added anions used in the present study. The
instrument conditions applied did not denature either apo or holo N-oTf
even after 500 s of exposure, which was confirmed by the
respective fluorescence emission properties. The data were collected
using "oversampling mode," which allows fast and accurate pickup
and averaging of data points with improved signal-to-noise ratio over
the extended time of measurements. A minimum of 1000 data points were
collected per trace on a time scale of 0-500 s, and at least three
identical traces were averaged for each anion concentration. The
averaged traces were best fit using the Levenberg-Marquardt
algorithm to the following double exponential curve fit equation using
the built-in software (version 4.36) on an Acorn Risc computer
interfaced to the main instrument.
Biphasic Time Course for the Anion-dependent Iron
Release Process--
Iron release kinetics of N-oTf were studied using
three anions of different chemical nature: NTA, which can act both as a chelator and a synergistic anion; pyrophosphate, a strong
nonsynergistic chelator anion; and sulfate, a simple nonsynergistic
anion that can form a coordination complex with iron. In Fig.
1 is shown a typical example of a clear
biphasic progress curve of iron release from N-oTf to 100 mM NTA (A), 10 mM pyrophosphate
(B), and 200 mM sulfate (C). The
profiles can be demarcated by an initial rapid step followed by a slow
hyperbolic step, both of which vary with the type and concentration of
anion. For NTA the initial rapid process is significantly slow compared
with the other two anions, and to emphasize the initial rapid phase the
data within 20 s is shown as respective insets in Fig.
1. The initial rapid process is very dominant in the case of
pyrophosphate even below 5 mM concentrations but did not
induce complete iron removal within the time frame of 500 s used
in all the experiments. A similar observation was made in the case of
sulfate, but in the case of NTA the initial rapid process was not
clearly distinguishable below 10 mM concentration. For data
analysis the anion concentrations that induce complete iron release
within 500 s were considered. Sulfate and NTA below 20 mM and pyrophosphate below 10 mM did not induce
complete iron removal.
Biphasic progress curves of complete iron release from single
iron-binding site of transferrin, either in the isolated N-lobe or in
the selectively iron loaded N-lobe of full-length transferrin, have
been observed for the first time with N-oTf. Iron release studies
either with N-hTF or hTf-FeN were performed at different pH
values, and only monophasic progress curves were obtained and curve fit
to single exponential (16-20, 22-26). Iron release from C-lobe of
ovotransferrin at pH 5.6 showed monophasic progress curves with
different types and concentrations of anions under identical
experimental conditions used for
N-oTf.2 The monophasic
progress curves at acidic pH were also observed with
hTf-FeC (11, 13, 16).
Effect of Anion Concentration on the Observed Rate
Constants--
In Fig. 1, the solid line represents the
best fit line to Equation 1 in all the three anion cases. The
normalized variance for all the double exponential curve fits were in
the order of 10
The fractional amplitude data was obtained from the double exponential
curve fit of the biphasic raw data to Equation 1 yielding two
amplitudes, A1 and A2 for
the observed rate constants r1 and r2, respectively. In Fig.
3 is shown the pattern of variation of
fractional amplitude as a function of NTA (A) and
pyrophosphate (B) concentrations. In both the cases
the amplitude of larger rate constant (A1)
decreases, whereas the amplitude for smaller rate constant
(A2) increases with anion concentration.
Fractional amplitudes at lower sulfate concentration did not follow a
specific pattern, and at concentrations above 50 mM both of
the amplitudes were almost identical, although the trend of
A1 decreasing and A2
increasing with anion concentration was maintained (data not shown).
The standard error for observed rate constants and amplitudes obtained
from the curve fit to Equation 1 were less than 1 and 0.5% of the
corresponding values, respectively.
Model Presentation for Biphasic Kinetics and Data
Evaluation--
Biphasic iron release process from N-oTf can be
generally represented as shown in Scheme 1.
We examined the six models by curve fitting analyses using Equations
3-6 for the observed rate constants (Fig. 2) and using Equations 7 and
8 for the fractional amplitudes (Fig. 3). Getting reliable and
reproducible data is, however, almost impossible by using as many as
four unknown parameters (K1 to
K4). The number of unknown parameters were
minimized to two by utilizing the additional advantage of 2
The r1 and r2 (Fig. 2)
and amplitude (Fig. 3) data were evaluated by curve fitting analyses
using Equations 3-8 for refining the model of iron release. Data did
not fit well for the single pathway mechanism in the pre-equilibrium
state as shown in model 4 where the iron release can occur only through
Y form. Models 5 and 6 involve the anion-dependent state of
equilibrium for iron release; the curve fit for both models yielded
very poor results. This confirms the unlikely single pathway mechanism
of iron release for N-oTf.
In the dual pathway mechanism of iron release there is one possibility
for pre-equilibrium process (presence of both X0
and Y0 at t = 0) as represented
by model 3. Good fits were obtained for r1 and
r2 plots but did not yield comparable values of
K1 and K4 between the two
plots within the limits of the error bar, and fit for amplitude data
yielded larger error. Models 2 and 1 are the
anion-dependent equilibrium cases
(X0 = 1 and Y0 = 0 at
t = 0) where curve fit for model 2 did not yield good
results. The data were best fit to model 1 for all the three plots
(r1, r2, and amplitude).
In Fig. 2 is shown the plots of observed rate constants;
r1 (a panels) and
r2 (b panels) for the three anions that are curve fit to Equations 3-6, and the best fit is represented by the dashed line. The curve fit for
r1 followed an apparently linear relation with
concentrations of all the three anion, whereas for
r2 there is a clear hyperbolic pattern seen. The
correlation coefficients (R) for curve fitting analyses were
excellent (shown within each plot), and moreover the values obtained
for K1 and K4 from the
two plots were remarkably consistent with minimum errors. This was the
case irrespective of the type of anion used, although a slightly larger
error was obtained for sulfate case. The curve fit for amplitude data
of NTA and pyrophosphate is shown by the dashed line in Fig.
3, which yielded agreeable values in comparison with the values
obtained from the respective r1 and r2 plots. The summary of all the rate constants
obtained for the model 1 from the present analysis is shown in Table
II. Considering the complexity of the
curve fit equation for amplitude (Equations 7 and 8), the minor errors
in the r1 and r2 values
are amplified in the analysis, and hence there is deviation in the
curve fit values from the other two plots. However, amplitude curve fit analysis provides a good reevaluation method for the values obtained from r1 and r2 plots.
Addition of nonsynergistic anion such as chloride was shown to
significantly effect the iron release kinetics from both the lobes of
transferrin (36). Anions bind strongly but differentially to both the
lobes of the apo structure of transferrins (5, 37-40). With respect to
the synergistic anion-binding site, a second class of anion-binding
sites was proposed to be involved in inducing the conformational
change, which is the rate-limiting step in the iron release pathway
proposed by Bates and co-workers (27, 28). The prerequisite nature of
nonsynergistic anion binding for domain opening and subsequent iron
release was clearly shown in case of hTf-FeN (41),
hTf-FeC (16, 41), and diferric hTf (24). The speculated
location of nonsynergistic anion-binding site on hTf-FeC
was termed as kinetically significant anion-binding site (42), and
Lys569 was suggested to act as one such possible site (13).
One of the recent report using site-directed mutagenesis approach
showed that Lys296 of the dilysine pair
(Lys206-Lys296) was one of the anion-binding
residues of N-hTf (19). Recently, 1.9 Å resolution crystallographic
structure of the sulfate anion-binding sites on N-oTf was determined in
this laboratory, and two anion-binding sites (sites 1 and 2) in the
interdamain cleft were shown to play key roles in the domain opening
and synergistic carbonate anion release mechanism (33). In brief, the
groups involved in the binding of anion are Ser91-OG and
His250-NE at site 1 and Arg121-NE,
Arg121-NH2, and Ser122-N at site 2, and from
the perspective of an iron-binding/release mechanism we name these two
sites as regulatory anion-binding sites.
For N-oTf, the crystallographic data of three different structural
states are now available. The structures are the holo form (15), an
intermediate form (32), and the sulfate anion bound apo form (33). The
apo crystal was soaked in NTA-Fe3+ solution complex, which
assumes an open structure but with bound iron and NTA to form an
intermediate form in the iron uptake/release process (32). The iron
atom is held by the coordination of two protein ligands of
Tyr92-OH and Tyr191-OH, and the other iron
coordination sites are shared by direct interaction of NTA anion. In
this coordinating intermediate complex, the regulatory anion-binding
site groups make unique interactions as summarized in Table
III. As an important observation for the coordinating intermediate structure, site 1 is still occupied by
sulfate anion, but no sulfate anion exists on site 2, despite free
situation of Arg121-NE. This may be due, at least in part,
to the occupation of Ser122-N by NTA-O4. Although the apo
structure with saturated NTA in the absence of Fe3+ is not
available at present, the absence of
SO42 Fig. 5 displays the feasible mechanistic
scheme compatible with the kinetic data for the dual pathway mechanism
of iron-release from N-oTf. The holo form with domain closed
conformation X is transformed into putative
CO32 In conclusion, iron release kinetics of N-oTf was studied at the
endosomal pH using NTA, pyrophosphate, and sulfate anions, and in all
the three cases clear biphasic kinetics were observed compared with
monophasic kinetics of N-hTf and hTF-FeN (16-20, 22-26).
The new kinetic approach derived allows critical evaluation of the
process using first order rate constants, which differ with the
chemical nature of anions used. The proposed model better explains the
anion-dependent formation of open-like structure from which
iron release occurs by dual pathway mechanism. The two anion-binding
sites located in the apo form (33) and their coordinating structural
situations in the holo (15) and intermediate forms (32) are
successfully used to derive the mechanistic model to support and
substantiate the dual pathway kinetic model for N-oTf.
We thank Prof. Tokuji Ikeda and Dr. Shuji Adachi (Kyoto University) and Dr. Eizo Tatsumi (Japan International Research Center for Agricultural Sciences) for helpful discussions about kinetic analysis.
* This work was supported in part by a grant-in-aid for scientific research from the Ministry of Education, Science, Sports, and Culture of Japan.The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
§ To whom correspondence should be addressed: Research Inst. for Food Science, Kyoto University, Uji, Kyoto 611 0011, Japan. Tel.: 81-774-38-3734; Fax: 81-774-38-3735.
2 B. K. Muralidhara and M. Hirose, manuscript in preparation.
The abbreviations used are: N-hTf, N-lobe of human serum transferrin; N-oTf, N-lobe of ovotransferrin; hTf-FeC, C-terminal monoferric human serum transferrin; hTf-FeN, N-terminal monoferric human serum transferrin; NTA, nitrilotriacetate; hTf, human serum transferrin; Mes, 2-(N-morpholino)ethanesulfonic acid.
Copyright © 2000 by The American Society for Biochemistry and Molecular Biology, Inc. This article has been cited by other articles:
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