![]()
|
|
||||||||
J. Biol. Chem., Vol. 275, Issue 26, 19928-19932, June 30, 2000
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
From the Institute of Molecular and Cellular Biosciences,
University of Tokyo, Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan
Received for publication, March 6, 2000, and in revised form, April 27, 2000
1-Deoxy-D-xylulose 5-phosphate
(DXP) reductoisomerase, which simultaneously catalyzes the
intramolecular rearrangement and reduction of DXP to form
2-C-methyl-D-erythritol 4-phosphate, constitutes a key enzyme of an alternative mevalonate-independent pathway for isopentenyl diphosphate biosynthesis. The dxr
gene encoding this enzyme from Escherichia coli was
overexpressed as a histidine-tagged protein and characterized in
detail. DNA sequencing analysis of the dxr genes from 10 E. coli dxr-deficient mutants revealed base substitution
mutations at four points: two nonsense mutations and two amino acid
substitutions (Gly14 to Asp14 and
Glu231 to Lys231). Diethyl pyrocarbonate
treatment inactivated DXP reductoisomerase, and subsequent
hydroxylamine treatment restored the activity of the diethyl
pyrocarbonate-treated enzyme. To characterize these defects, we
overexpressed the mutant enzymes G14D, E231K, H153Q, H209Q, and H257Q.
All of these mutant enzymes except for G14D were obtained as soluble
proteins. Although the purified enzyme E231K had wild-type
Km values for DXP and NADPH, the mutant enzyme had
less than a 0.24% wild-type kcat value.
Km values of H153Q, H209Q, and H257Q for DXP
increased to 3.5-, 7.6-, and 19-fold the wild-type value, respectively.
These results indicate that Glu231 of E. coli
DXP reductoisomerase plays an important role(s) in the conversion of
DXP to 2-C-methyl-D-erythritol 4-phosphate, and
that His153, His209, and His257, in
part, associate with DXP binding in the enzyme molecule.
Isoprenoids play important roles in all living organisms; they act
as steroid hormones in mammals, carotenoids in plants, and ubiquinone
or menaquinone in bacteria (1). Since the initial discovery of the
mevalonate pathway, it was widely accepted that isopentenyl
diphosphate, the fundamental unit in terpenoid biosynthesis, was only
formed through the ubiquitous mevalonate pathway. However, it has been
disclosed that many organisms, including several bacteria, green algae,
and the chloroplasts of higher plants, use an alternative mevalonate-independent pathway (nonmevalonate pathway) for the formation of isopentenyl diphosphate (2). Because the nonmevalonate pathway is absent from animals, the enzymes involved in the pathway are
considered to be good targets for the screening of antimicrobials.
The initial step of this pathway is the formation of
1-deoxy-D-xylulose 5-phosphate
(DXP)1 by the condensation of
pyruvate and glyceraldehyde 3-phosphate catalyzed by thiamine
diphosphate-dependent DXP synthase (Fig. 1). The dxs gene homologs
encoding the enzyme have been cloned from Escherichia coli
(3, 4), peppermint (Mentha X piperita) (5),
pepper (6), and Streptomyces sp. strain CL190 (7). In the
second step, the intramolecular rearrangement of DXP was assumed to
give a hypothetical rearrangement product,
2-C-methylerythrose 4-phosphate, which was then converted to
2-C-methyl-D-erythritol 4-phosphate (MEP) by an
unspecified reduction process (8, 9). We have succeeded in the first
cloning and overexpression of the gene (dxr, formerly
yaeM) encoding the DXP reductoisomerase from E. coli and have shown that the recombinant enzyme catalyzed the formation of MEP from DXP in a single step in the presence of both
NADPH and a divalent cation, such as Mn2+,
Mg2+, or Co2+ (10, 11). Additionally, we have
demonstrated that the enzyme activity is strongly and specifically
inhibited by fosmidomycin (FR-31564) (12), an antibiotic possessing the
formyl and phosphonate functions in the molecule (13-16) (Fig. 1).
Recently, it has been reported that fosmidomycin and its derivative
inhibited DXP reductoisomerase from Plasmodium falciparum
and that these inhibitors cured mice infected with the rodent malaria
parasite Plasmodium vinckei. Thus, DXP reductoisomerase has
been shown to represent an effective target for the chemotherapy of
malaria (17).
For a more effective drug design, it is important to identify the amino
acid residues essential for catalyzing this reaction. We initially
assumed the possibility that MEP might be synthesized from DXP by the
same reaction mechanism as that by the ketol-acid reductoisomerase (EC
1.1.1.86), which is involved in the biosynthesis of amino acids with a
branched chain, such as valine, isoleucine, and leucine (18). No
significant similarity, however, was found between the total amino acid
sequences of both reductoisomerases except for the NADPH binding motif
(11). Because DXP reductoisomerase is a novel target for the systematic
search of antimicrobials (12), herbicides (19, 20), and antimalaria
drugs (17), it is very significant to identify the catalytically
important residues in the DXP reductoisomerase.
In this study, we describe the characterization of the DXP
reductoisomerase from E. coli and the first identification
of its catalytic residues by analyzing the mutant DXP
reductoisomerases, which were constructed from E. coli
dxr-deficient mutants induced by
N-methyl-N'-nitro-N-nitrosoguanidine
and by site-directed mutagenesis.
Materials--
Materials from commercial sources included NADPH
(Sigma), nickel nitrilotriacetic acid agarose resin (Qiagen), and high
and low molecular weight electrophoresis calibration kits (Amersham Pharmacia Biotech). All other reagents were of the highest analytical grade available.
Standard Assay of DXP Reductoisomerase--
The expression and
purification of the recombinant DXP reductoisomerase were done as
already described (10, 11). The standard assay system consisted of 100 mM Tris-HCl (pH 7.5), 1 mM MnCl2, 0.3 mM NADPH, and 0.3 mM enzymatically
synthesized DXP (10) in a final volume of 200 µl. The reaction was
initiated by adding the enzyme solution to the complete assay mixture.
The oxidation of NADPH was monitored at 340 nm with a Benchmark
microplate reader (Bio-Rad) adjusted at 37 °C. One unit of the DXP
reductoisomerase activity is defined as the amount of the enzyme that
causes oxidation of 1 µmol of NADPH per min at 37 °C.
Chemical Modification of DXP Reductoisomerase by Diethyl
Pyrocarbonate--
The wild-type enzyme (1.2 µM) was
incubated at 25 °C with diethyl pyrocarbonate (600 µM)
in 500 µl of 100 mM potassium phosphate buffer (pH 7.5).
Fifty-µl aliquots were removed at 15-min intervals and assayed for
enzyme activity. Restoration of the activity by hydroxylamine was
investigated as follows. The wild-type enzyme was incubated at 25 °C
with diethyl pyrocarbonate (600 µM) in 500 µl of 100 mM potassium phosphate buffer (pH 7.5). After 30 min of
incubation, hydroxylamine (final concentration, 1 M) was added to the enzyme solution. Fifty µl aliquots were then removed at
15-min intervals and assayed for activity.
Determination of Mutational Points of E. coli DXP
Reductoisomerase-deficient Mutants--
Three E. coli DXP
reductoisomerase (dxr)-deficient mutants, ME1-ME3, were
isolated and reported (11). Seven mutants, ME4-ME10, which showed the
same phenotype as that of ME1, were further isolated by a previously
described method (11). Chromosomal DNAs from these 10 dxr-deficient mutants were extracted as described by Maniatis and co-workers (21). On the basis of the nucleotide sequences
just upstream and downstream of the dxr gene, two
oligonucleotide primers, 5'-TGTCTCAACTCTGGATGTTTC-3' (upstream of the
initiation codon in the dxr gene) and
5'-CTCTCTGTAGCCGGATTATCC-3' (downstream of the termination codon in the
dxr gene), were synthesized (Amersham Pharmacia Biotech).
These primers were then used with the total DNA from the 10 mutants to
amplify each mutant dxr gene by using Taq DNA
polymerase (Roche Molecular Biochemicals) and the protocol of the
supplier. Each polymerase chain reaction fragment was cloned into the
pGEM-T Easy vector (Promega). Strain JM109 (Takara Shuzo, Kyoto, Japan)
was used as a recipient during this transformation. Clones were
analyzed by DNA sequencing as described below.
Construction of the Plasmid for Overexpression of the Mutant dxr
Genes--
On the basis of the entire nucleotide sequence of the
dxr gene, two oligonucleotide primers,
5'-GGGGGATCCAAGCAACTCACCATTCTGGGC-3' (5' of the
dxr gene) and
5'-GGGGGATCCGCTTGCGAGACGCATCACCTC-3' (3' of the
dxr gene), including the BamHI restriction sites
(underlined) were synthesized (Amersham Pharmacia Biotech). These
primers were used with the total DNA from ME3 and ME9 to amplify each
mutant dxr gene. Each polymerase chain reaction fragment was
cleaved with BamHI and cloned into pUC118 (Takara Shuzo).
Strain JM109 was used as the recipient during this transformation.
Clones were analyzed for each correct insert by DNA sequencing as
described below. Each correct fragment was cloned into the multicloning site, BamHI, of the expression vector pQE30 (Qiagen), which
produces the histidine-tagged protein, to give pQEDXR3 and pQEDXR9 for the mutant enzymes E232K and G14D, respectively. The expression and
purification of the mutant enzymes were done using the identical procedure for that of the wild-type enzyme (10).
DNA Sequence Analysis--
The DNA sequence was determined by
the dideoxynucleotide chain termination method (22) with an automated
sequencer (model 4000L, Li-cor) and the protocol of the supplier.
Electrophoresis--
Proteins were separated by SDS-PAGE on
8-25% gels or native PAGE on 8-25% gels with the PhastSystem
(Amersham Pharmacia Biotech).
Site-directed Mutagenesis--
All in vitro mutations
were generated using a Takara polymerase chain reaction in
vitro mutagenesis kit (Takara Shuzo). The sequences of the
mutagenic primers are as follows: H153Q,
5'-GCGTTTTGTTCGCTATCGAC-3'; H209Q,
5'-TTCGGTTGACGGCAGGCTTG-3'; and H257Q,
5'-TGATTCAGTCAATGGTGCGC-3' (Amersham Pharmacia
Biotech). The underlined letters represent the substituted nucleotides.
Each mutant gene was sequenced to verify the presence of the desired
mutation and the absence of the polymerase chain reaction-generated
mutations. Construction of the plasmid for overexpression of these
mutant dxr genes was done as already described.
Optimum pH and Temperature and Heat Stability of the DXP
Reductoisomerase--
E. coli DXP reductoisomerase appeared
to have a broad pH optimum, with more than 75% of its maximum activity
observed between pH 7.0 and 8.5 in 100 mM Tris-HCl buffer.
The effect of temperature on the enzyme activity was investigated over
a range of 16-80 °C. The maximum activity was observed at
40-60 °C, and 70% of the maximum activity was obtained even at
80 °C (Fig. 2). The activation energy
was estimated to be 75 kJ/mol based on an Arrhenius plot (Fig. 2,
inset). The purified enzyme was not heat stable above
50 °C. For example, heating the enzyme at 55 or 60 °C for 10 min
led to 70 or 100% losses in the activity, respectively. On the other
hand, the enzyme retained more than 90% of the activity after storage
at 4 °C in 100 mM Tris-HCl buffer (pH 7.5) for 1 month.
1-Deoxyxylulose Is Not a Substrate for DXP
Reductoisomerase--
When 1-deoxyxylulose (DX) in place of DXP was
added to the reaction mixture over a concentration range of 0.05-2
mM, the oxidation of NADPH was not observed. Furthermore,
the reaction of DXP reductoisomerase was not inhibited by the addition
of 0.05-2 mM DX (data not shown).
Kinetic Parameters for the Wild-type DXP
Reductoisomerase--
Kinetic parameters for DXP reductoisomerase were
determined in the presence of each divalent cation (Mn2+,
Mg2+, or Co2+), as summarized in Table
I. In each case, the addition of 1 mM divalent cation showed the highest enzyme activity. The
DXP reductoisomerase yielded the lowest Km value for
the substrate DXP when assayed in the reaction mixture containing Co2+. On the other hand, the lowest Km
value for NADPH was calculated in the presence of Mn2+.
Because the highest kcat value was also obtained
in the assay mixture containing Mn2+, an additional
standard assay for the mutant enzymes was carried out in the reaction
mixture with 1 mM MnCl2.
Determination of Mutational Points of E. coli DXP
Reductoisomerase-deficient Mutants--
We had isolated the E. coli dxr-deficient mutants prepared by
N-methyl-N'-nitro-N-nitrosoguanidine
treatment. (10, 11). The deficiency could be a result of the amino acid
substitutions caused by base substitution mutations introduced by this
treatment. Because kinetic characterization of such mutant enzymes
provides important information on the amino acid residues for
catalysis, we decided to determine the mutational points of the
dxr-deficient mutants. A DNA sequencing analysis of the
dxr genes from the 10 dxr-deficient mutants
revealed base substitution mutations at four points: two nonsense
mutations (C472 to T472 and C757 to
T757) and two amino acid substitutions (G41 to
A41 and G691 to A691, corresponding
to Gly14 to Asp14 and Glu231 to
Lys231, respectively).
Chemical Modification by Diethyl Pyrocarbonate--
E.
coli DXP reductoisomerase has eight histidine residues per
subunit. Of these histidine residues, His153,
His209, and His257 are conserved among the DXP
reductoisomerases from six genera of bacteria, two plants (23, 24), and
a malaria parasite P. falciparum (17) (Fig.
3). A reaction of the wild-type enzyme with diethyl pyrocarbonate was accompanied by a
time-dependent loss in activity. The subsequent addition of
hydroxylamine restored approximately 50% of the initial activity (data
not shown). This result suggested involvement of the histidine
residue(s) in the catalytic site.
Site-directed Mutagenesis of His153,
His209, and His257 and Their Overexpression in
E. coli--
To examine which histidine residues (of
His153, His209, and His257) in the
DXP reductoisomerase are essential for the activity, we used
site-directed mutagenesis in the E. coli enzyme. The codon for each histidine was altered to encode glutamine, a residue that has
an amide nitrogen that can be isosteric with the imidazole nitrogen of
histidine but that can serve neither as an acid nor as a base. The
mutant enzymes, H153Q, H209Q, and H257Q, were then overexpressed as
histidine-tagged proteins. They were obtained as soluble proteins and
purified with nickel nitrilotriacetic acid agarose resin almost to
homogeneity as judged by SDS-PAGE (Fig.
4).
Comparison of Kinetic Parameters between the Wild-type and
dxr-deficient Mutant Enzymes--
As summarized in Table I, the
kinetic parameters for the mutant DXP reductoisomerases were determined
in the presence of MnCl2. To compare the kinetic
parameters, the two dxr-deficient mutant enzymes, G14D and
E231K, were overexpressed in E. coli as the histidine-tagged
proteins. Although it was highly expressed, G14D was obtained as an
insoluble product. E231K was overexpressed as a soluble enzyme and
purified to homogeneity, as judged by SDS-PAGE (Fig. 4). Although the
mutant enzyme E231K had normal Km values for DXP and
NADPH of 270 and 18 µM, respectively, the enzyme yielded
a catalytic rate constant (kcat) of 1.4 × 103 min Comparison of Kinetic Parameters between the Wild-type and His
Mutant Enzymes--
H153Q and H209Q yielded wild-type
Km values for NADPH (Table I). However, these mutant
enzymes gave 3.5- and 7.6-fold the wild-type Km
value for DXP, respectively. H257Q yielded 20-fold the wild-type
Km values for DXP and NADPH.
kcat and the specificity constants
(kcat/Km) of these three mutant enzymes were much lower than those of the wild-type enzyme, indicating the importance of His153, His209,
and His257.
The enzyme 1-deoxy-D-xylulose 5-phosphate
reductoisomerase simultaneously catalyzes the intramolecular
rearrangement and reduction of 1-deoxy-D-xylulose
5-phosphate to yield 2-C-methyl-D-erythritol 4-phosphate (Fig. 1). Although DXP reductoisomerase has so far been
cloned from E. coli, plants (23, 24), and a malaria parasite (17), its kinetic characterization has not fully been carried out. We
describe here the biochemical characterization of the novel enzyme that
constitutes the nonmevalonate pathway for isopentenyl diphosphate biosynthesis.
We have previously demonstrated that DXP reductoisomerase uses only
NADPH as a cofactor (10, 11). In addition, we have shown that the
enzyme also requires a divalent cation such as Mn2+,
Mg2+, or Co2+ (10, 11). Recently, Proteau
et al. (25) and Radykewicz et al. (26)
independently reported that the E. coli enzyme belonged to a
class B dehydrogenase. In this study, the kinetic parameters of the
enzyme in the presence of each divalent cation were determined. The
highest kcat value was obtained when
Mn2+ was added to the reaction mixtures. The highest
specificity constant (kcat/Km) was obtained when
Co2+ was added. In terms of the specificity constant, it is
speculated that Co2+ is an in vivo relevant
cation. In addition, the enzyme activity in the presence of 0.1 mM of each cation was reduced to approximately 30% of the
maximum activity obtained in the presence of a 1 mM concentration of each cation (data not shown), suggesting that the
enzyme activity is significantly affected by the in vivo
concentration of each cation. Furthermore, we investigated the
possibility of producing 2-C-methylerythritol from DX using
DXP reductoisomerase. When DX was used as the substrate in place of
DXP, the oxidation of NADPH was not observed under the described
conditions. This indicates that the DXP reductoisomerase cannot use DX
as a substrate.
We isolated several E. coli dxr-deficient mutants, which
absolutely required for 2-C-methylerythritol, a free alcohol
of MEP, for growth and survival (11). Thus, it is evident that the
analyses of these mutants provide important information on critical
amino acid residues in catalysis and/or structural integrity. DNA
sequencing analysis revealed the point mutations of the amino acids,
Gly14 to Asp14 and from Glu231 to
Lys231 in the E. coli dxr-deficient mutants.
These amino acid residues, Gly and Glu, were found in all the DXP
reductoisomerase sequences from nine organisms (Fig. 3). In order to
elucidate the enzymatic properties, we overexpressed the mutant enzymes
G14D and E231K. The expression in E. coli of the mutant gene
E231K yielded a high level of soluble protein, which was subsequently
purified to homogeneity and characterized. E231K had less than a 0.24%
wild-type kcat value, although the mutant enzyme
had wild-type Km values for DXP and NADPH. These
results strongly suggest that Glu231 of the E. coli DXP reductoisomerase plays an important role(s) in the
conversion of DXP to the reaction product, MEP, not only in
vitro but also in vivo. Because the
dxr-deficient mutant with Lys231 requires
2-C-methylerythritol, a free alcohol of MEP, for growth, it
is evident that the E231K enzyme does not in fact produce enough MEP
for the growth. On the other hand, the expression in E. coli of the mutant gene G14D yielded an insoluble protein. Although glycine
residue 14 is speculated to be a part of the NADPH binding motif, the
residue may also contribute to maintaining the secondary or tertiary
structure of the enzyme.
An amino acid sequence comparison of the DXP reductoisomerase from
E. coli with those from bacteria and plants revealed three conserved histidine residues, His153, His209,
and His257 (Fig. 3). Diethyl pyrocarbonate treatment
inactivated the wild-type enzyme, and subsequent hydroxylamine
treatment restored the activity of the diethyl pyrocarbonate-treated
enzyme. Thus, we employed site-directed mutagenesis of the E. coli DXP reductoisomerase to identify which histidine residues
function during catalysis. The expression in E. coli of the
mutant genes H153Q, H209Q, and H257Q yielded soluble proteins, which
were subsequently purified to homogeneity and characterized in detail.
H209Q and H257Q showed drastic decreases to 5200- and 27,000-fold the
wild-type kcat/Km value,
respectively. Furthermore, the
kcat/Km values of H209Q and
H257Q are much lower than that of E231K, which is obtained from a
dxr-deficient mutant. Thus, it is suggested that H209Q and
H257Q have no enzymatic function in vivo. Moreover, H153Q
showed a decrease to 36-fold the wild-type
kcat/Km value, suggesting
that His153 also functions during catalysis.
We consider it unlikely that the low kcat values
of the mutant enzymes, E231K, H153Q, and H209Q, are a consequence of
the altered structural integrity, because these mutant enzymes
exhibited Km values for NADPH not significantly
different from that of the wild-type enzyme. Although H257Q was 20-fold
the wild-type Km value, the mutant enzyme showed the
same mobility in the native PAGE as did the wild-type enzyme (data not
shown), suggesting that the mutant did not alter the quaternary structure.
Because the DXP reductoisomerase is a new target for antimicrobials
(12), herbicides (18, 19), and antimalaria drugs (17), characterization
of the enzymatic properties and identification of the catalytic amino
acid residues are important. Although the crystal structure analysis of
the DXP reductoisomerase is indispensable to determining the functional
residues in detail, our study provides important information for the
crystal structure analysis and the opportunity for modeling enzyme-drug interaction.
*
This work was supported in part by Research for the Future
Program Grant JSPS-RFTF96I00301 from the Japan Society for the Promotion of Science (to H. S.), by Grant-in-Aid for Scientific Research (B) 10460047 from the Ministry of Education, Science, Sports
and Culture of Japan (to H. S.), by Grant-in-Aid for Encouragement of
Young Scientists 11760086 from the Japan Society for the Promotion of
Science (to T. K.), and by a grant from the Uehara Memorial Foundation
(to T. K.).The costs of publication of this
article were defrayed in part by the
payment of page charges. The article must therefore be hereby marked
"advertisement" in
accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
§
Present address: Dept. of Biochemistry, Chiba University, School of
Medicine, Inohana, Chiba 260-8670, Japan.
¶
To whom correspondence should be addressed. Tel.:
81-3-5841-7839; Fax: 81-3-5841-8485; E-mail:
haseto@iam.u-tokyo.ac.jp.
Published, JBC Papers in Press, April 27, 2000, DOI 10.1074/jbc.M001820200
The abbreviations used are:
DXP, 1-deoxy-D-xylulose 5-phosphate;
DX, 1-deoxyxylulose;
MEP, 2-C-methyl-D-erythritol 4-phosphate;
PAGE, polyacrylamide gel electrophoresis.
Characterization of 1-Deoxy-D-xylulose 5-Phosphate
Reductoisomerase, an Enzyme Involved in Isopentenyl Diphosphate
Biosynthesis, and Identification of Its Catalytic Amino Acid
Residues*
,
§,
![]()
ABSTRACT
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
![]()
INTRODUCTION
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES

View larger version (9K):
[in a new window]
Fig. 1.
DXP reductoisomerase reaction in the
nonmevalonate pathway for isopentenyl diphosphate biosynthesis
and the structure of fosmidomycin. 2-C-Methylerythrose
4-phosphate is a hypothetical intermediate in the DXP reductoisomerase
reaction. Fosmidomycin inhibits DXP reductoisomerase.
IPP, isopentenyl diphosphate.
![]()
EXPERIMENTAL PROCEDURES
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
![]()
RESULTS
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES

View larger version (18K):
[in a new window]
Fig. 2.
Effects of temperature on wild-type DXP
reductoisomerase activity. The effect of temperature on the
activity of the enzyme was investigated over a range of 16-80 °C.
The inset shows the Arrhenius plot used to estimate the
activation energy of the enzyme. All data are average values of at
least duplicate determinations.
Kinetic parameters for the wild-type and the mutant DXP
reductoisomerases

View larger version (84K):
[in a new window]
Fig. 3.
Multiple alignment of the amino acid
sequences of E. coli DXP reductoisomerase and other
DXP reductoisomerase homologs. Identical amino acids among nine
DXP reductoisomerases are marked by asterisks.
Dashes indicate gaps introduced for the optimization of the
alignment. Boldface letters indicate positions of amino acid
substitution by
N-methyl-N'-nitro-N-nitrosoguanidine
treatment or by site-directed mutagenesis. The positions of
Asp14 and Lys231 are also indicated on the
E. coli sequence. Ec, E. coli
(GenBankTM accession number AB013300); Bs,
Bacillus subtilis (SWISS-PROT accession number Q31753);
Hi, Haemophilus influenzae (SWISS-PROT accession
number P44055); Pf, Plasmodium falciparum
(GenBankTM accession number AF111813); Hp,
Helicobacter pylori, (SWISS-PROT accession number P56139);
My, Mycobacterium tuberculosis (SWISS-PROT
accession number Q10798); Sy, Synechocystis sp.
PCC6803 (SWISS-PROT accession number Q55663); At,
Arabidopsis thaliana (GenBankTM accession number AJ242588);
Mp, peppermint (GenBankTM accession number AF116825).

View larger version (46K):
[in a new window]
Fig. 4.
SDS-polyacrylamide gel electrophoresis of
purified wild-type and mutant enzymes. Molecular mass standard
(M) and approximately 1 mg of purified wild-type enzyme
(WT) or the indicated purified mutant DXP reductoisomerases
were subjected to SDS-PAGE on 8-25% gels. The gel was stained by
Coomassie Brilliant Blue R-250.
1, representing a decrease
of this value to 450-fold that of the wild-type.
![]()
DISCUSSION
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
![]()
FOOTNOTES
These authors contributed equally to this work.
![]()
ABBREVIATIONS
![]()
REFERENCES
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
1.
Sacchettini, J. C.,
and Poulter, C. D.
(1997)
Science
277,
1788-1789
2.
Rohmer, M.
(1999)
Comprehensive Natural Products Chemistry
, Vol. 2
, pp. 45-67, Elsevier, Amsterdam
3.
Sprenger, G. A.,
Schorken, U.,
Wiegert, T.,
Grolle, S.,
Graaf, A. A.,
Taylor, S. V.,
Begley, T. P.,
Bringer-Meyer, S.,
and Sahm, H.
(1997)
Proc. Natl. Acad. Sci. U. S. A.
94,
12857-12862
4.
Lois, L. M.,
Campos, N.,
Putra, S. R.,
Danielsen, K.,
Rohmer, M.,
and Boronat, A.
(1998)
Proc. Natl. Acad. Sci. U. S. A.
95,
2105-2110
5.
Lange, B. M.,
Wildung, M. R.,
McCaskill, D.,
and Croteau, R.
(1998)
Proc. Natl. Acad. Sci. U. S. A.
95,
2100-2104
6.
Bouvier, F.,
d'Harlingue, A.,
Suire, C.,
Backhaus, R. A.,
and Camara, B.
(1998)
Plant Physiol.
117,
1423-1431
7.
Kuzuyama, T.,
Takagi, M.,
Takahashi, S.,
and Seto, H.
(2000)
J. Bacteriol.
182,
891-897
8.
Duvold, T.,
Bravo, J. M.,
Pale-Grosdemange, C.,
and Rohmer, M.
(1997)
Tetrahedron Lett.
38,
4769-4772
9.
Duvold, T.,
Cali, P.,
Bravo, J. M.,
and Rohmer, M.
(1997)
Tetrahedron Lett.
38,
6181-6184
10.
Kuzuyama, T.,
Takahashi, S.,
Watanabe, H.,
and Seto, H.
(1998)
Tetrahedron Lett.
39,
4509-4512
11.
Takahashi, S.,
Kuzuyama, T.,
Watanabe, H.,
and Seto, H.
(1998)
Proc. Natl. Acad. Sci. U. S. A.
95,
9879-9884
12.
Kuzuyama, T.,
Shimizu, T.,
Takahashi, S.,
and Seto, H.
(1998)
Tetrahedron Lett.
39,
7913-7916
13.
Iguchi, E.,
Okuhara, M.,
Kohsaka, M.,
Aoki, H.,
and Imanaka, H.
(1980)
J. Antibiot.
33,
18-23
14.
Okuhara, M.,
Kuroda, Y.,
Goto, T.,
Okamoto, M.,
Terano, H.,
Kohsaka, M.,
Aoki, H.,
and Imanaka, H.
(1980)
J. Antibiot.
33,
24-28
15.
Kuroda, Y.,
Okuhara, M.,
Goto, T.,
Okamoto, M.,
Terano, H.,
Kohsaka, M.,
Aoki, H.,
and Imanaka, H.
(1980)
J. Antibiot.
33,
29-35
16.
Shigi, Y.
(1989)
J. Antimicrob. Chemother.
24,
131-245
17.
Jomaa, H.,
Wiesner, J.,
Sanderbrand, S.,
Altincicek, B.,
Weidemeyer, C.,
Hintz, M.,
Türbachova, I.,
Eberl, M.,
Zeidler, J.,
Lichtenthaler, H. K.,
Soldati, D.,
and Beck, E.
(1999)
Science
285,
1573-1576
18.
Rane, M. J.,
and Calvo, K. C.
(1997)
Arch. Biochem. Biophys.
338,
83-89
19.
Zeidler, J.,
Schwender, J.,
Mueller, C.,
Wiesner, J.,
Weidemeyer, C.,
Beck, E.,
Jomaa, H.,
and Lichtenthaler, H. K.
(1998)
Z. Naturforsch.
53,
980-986
20.
Fellermeier, M.,
Kis, K.,
Sagner, S.,
Maier, U.,
Bacher, A.,
and Zenk, M. H.
(1999)
Tetrahedron Lett.
40,
2743-2746
21.
Sambrook, J.,
Fritsch, E. F.,
and Maniatis, T.
(1989)
Molecular Cloning: A Laboratory Manual
, 2nd Ed.
, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
22.
Sanger, F.,
Nicklen, S.,
and Coulson, A. R.
(1977)
Proc. Natl. Acad. Sci. U. S. A.
74,
5463-5467
23.
Schwender, J.,
Muller, C.,
Zeidler, J.,
and Lichtenthaler, H. K.
(1999)
FEBS Lett.
455,
140-144
24.
Lange, B. M.,
and Croteau, R.
(1999)
Arch. Biochem. Biophys.
365,
170-174
25.
Proteau, P. J.,
Woo, Y.,
Williamson, R. T.,
and Phaosiri, C.
(1999)
Org. Lett.
1,
921-923
26.
Radykewicz, T.,
Rohdich, F.,
Wungsintaweekul, J.,
Herz, S.,
Kis, K.,
Eisenreich, W.,
Bacher, A.,
Zenk, M. H.,
and Arigoni, D.
(2000)
FEBS Lett.
465,
157-160
Copyright © 2000 by The American Society for Biochemistry and Molecular Biology, Inc.
![]()
CiteULike
Complore
Connotea
Del.icio.us
Digg
Reddit
Technorati What's this?
This article has been cited by other articles:
![]() |
L. M. Henriksson, T. Unge, J. Carlsson, J. Aqvist, S. L. Mowbray, and T. A. Jones Structures of Mycobacterium tuberculosis 1-Deoxy-D-xylulose-5-phosphate Reductoisomerase Provide New Insights into Catalysis J. Biol. Chem., July 6, 2007; 282(27): 19905 - 19916. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. Hemmerlin, D. Tritsch, M. Hartmann, K. Pacaud, J.-F. Hoeffler, A. van Dorsselaer, M. Rohmer, and T. J. Bach A Cytosolic Arabidopsis D-Xylulose Kinase Catalyzes the Phosphorylation of 1-Deoxy-D-Xylulose into a Precursor of the Plastidial Isoprenoid Pathway Plant Physiology, October 1, 2006; 142(2): 441 - 457. [Abstract] [Full Text] [PDF] |
||||
![]() |
R. K. Dhiman, M. L. Schaeffer, A. M. Bailey, C. A. Testa, H. Scherman, and D. C. Crick 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase (IspC) from Mycobacterium tuberculosis: towards Understanding Mycobacterial Resistance to Fosmidomycin J. Bacteriol., December 15, 2005; 187(24): 8395 - 8402. [Abstract] [Full Text] [PDF] |
||||
![]() |
E. B. Gottlin, R. E. Benson, S. Conary, B. Antonio, K. Duke, E. S. Payne, S. S. Ashraf, and D. J. Christensen High-Throughput Screen for Inhibitors of 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase by Surrogate Ligand Competition J Biomol Screen, June 1, 2003; 8(3): 332 - 339. [Abstract] [PDF] |
||||
![]() |
S. Steinbacher, J. Kaiser, W. Eisenreich, R. Huber, A. Bacher, and F. Rohdich Structural Basis of Fosmidomycin Action Revealed by the Complex with 2-C-Methyl-D-erythritol 4-phosphate Synthase (IspC). IMPLICATIONS FOR THE CATALYTIC MECHANISM AND ANTI-MALARIA DRUG DEVELOPMENT J. Biol. Chem., May 9, 2003; 278(20): 18401 - 18407. [Abstract] [Full Text] [PDF] |
||||
![]() |
K. Reuter, S. Sanderbrand, H. Jomaa, J. Wiesner, I. Steinbrecher, E. Beck, M. Hintz, G. Klebe, and M. T. Stubbs Crystal Structure of 1-Deoxy-D-xylulose-5-phosphate Reductoisomerase, a Crucial Enzyme in the Non-mevalonate Pathway of Isoprenoid Biosynthesis J. Biol. Chem., February 8, 2002; 277(7): 5378 - 5384. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. McAteer, A. Coulson, N. McLennan, and M. Masters The lytB Gene of Escherichia coli Is Essential and Specifies a Product Needed for Isoprenoid Biosynthesis J. Bacteriol., December 15, 2001; 183(24): 7403 - 7407. [Abstract] [Full Text] [PDF] |
||||
![]() |
B. Altincicek, A.-K. Kollas, S. Sanderbrand, J. Wiesner, M. Hintz, E. Beck, and H. Jomaa GcpE Is Involved in the 2-C-Methyl-D-Erythritol 4-Phosphate Pathway of Isoprenoid Biosynthesis in Escherichia coli J. Bacteriol., April 15, 2001; 183(8): 2411 - 2416. [Abstract] [Full Text] |
||||
![]() |
B. Altincicek, J. Moll, N. Campos, G. Foerster, E. Beck, J.-F. Hoeffler, C. Grosdemange-Billiard, M. Rodriguez-Concepcion, M. Rohmer, A. Boronat, et al. Cutting Edge: Human {{gamma}}{{delta}} T Cells Are Activated by Intermediates of the 2-C-methyl-D-erythritol 4-phosphate Pathway of Isoprenoid Biosynthesis J. Immunol., March 15, 2001; 166(6): 3655 - 3658. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. Ali, Z. Hayat Mahmud, J. G. Morris Jr., S. Sozhamannan, and J. A. Johnson Sequence Analysis of TnphoA Insertion Sites in Vibrio cholerae Mutants Defective in Rugose Polysaccharide Production Infect. Immun., December 1, 2000; 68(12): 6857 - 6864. [Abstract] [Full Text] [PDF] |
||||
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| HOME | HELP | FEEDBACK | SUBSCRIPTIONS | ARCHIVE | SEARCH | TABLE OF CONTENTS |
| All ASBMB Journals | Molecular and Cellular Proteomics |
| Journal of Lipid Research | ASBMB Today |