Originally published In Press as doi:10.1074/jbc.M000692200 on April 17, 2000
J. Biol. Chem., Vol. 275, Issue 33, 25562-25571, August 18, 2000
Identification of the Binding Site for a Novel Class of CCR2b
Chemokine Receptor Antagonists
BINDING TO A COMMON CHEMOKINE RECEPTOR MOTIF WITHIN THE HELICAL
BUNDLE*
Tara
Mirzadegan
,
Frank
Diehl,
Bettina
Ebi,
Sunil
Bhakta,
Irene
Polsky,
Deborah
McCarley,
Mary
Mulkins,
Gabe S.
Weatherhead,
Jean-Marc
Lapierre,
John
Dankwardt,
David
Morgans Jr.,
Robert
Wilhelm, and
Kurt
Jarnagin§
From Roche Bioscience, Palo Alto, California 94304
Received for publication, January 31, 2000, and in revised form, April 17, 2000
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ABSTRACT |
Monocyte chemoattracant-1
(MCP-1) stimulates leukocyte chemotaxis to inflammatory sites,
such as rheumatoid arthritis, atherosclerosis, and asthma, by use of
the MCP-1 receptor, CCR2, a member of the G-protein-coupled
seven-transmembrane receptor superfamily. These studies identified a
family of antagonists, spiropiperidines. One of the more potent
compounds blocks MCP-1 binding to CCR2 with a Kd of
60 nM, but it is unable to block binding to CXCR1, CCR1, or
CCR3. These compounds were effective inhibitors of chemotaxis toward
MCP-1 but were very poor inhibitors of CCR1-mediated chemotaxis. The
compounds are effective blockers of MCP-1-driven inhibition of
adenylate cyclase and MCP-1- and MCP-3-driven cytosolic calcium influx;
the compounds are not agonists for these pathways. We showed that
glutamate 291 (Glu291) of CCR2 is a critical residue
for high affinity binding and that this residue contributes little to
MCP-1 binding to CCR2. The basic nitrogen present in the
spiropiperidine compounds may be the interaction partner for
Glu291, because the basicity of this nitrogen was essential
for affinity; furthermore, a different class of antagonists, a class
that does not have a basic nitrogen (2-carboxypyrroles), were not
affected by mutations of Glu291. In addition to the CCR2
receptor, spiropiperidine compounds have affinity for several
biogenic amine receptors. Receptor models indicate that the acidic
residue, Glu291, from transmembrane-7 of CCR2 is in a
position similar to the acidic residue contributed from transmembrane-3
of biogenic amine receptors, which may account for the shared affinity
of spiropiperidines for these two receptor classes. The models suggest
that the acid-base pair, Glu291 to piperidine nitrogen,
anchors the spiropiperidine compound within the transmembrane ovoid
bundle. This binding site may overlap with the space required by MCP-1
during binding and signaling; thus the small molecule ligands act as
antagonists. An acidic residue in transmembrane region 7 is
found in most chemokine receptors and is rare in other serpentine
receptors. The model of the binding site may suggest ways to make new
small molecule chemokine receptor antagonists, and it may rationalize
the design of more potent and selective antagonists.
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INTRODUCTION |
Chemokines are a large family of small proteins that mediate
attraction of leukocytes to inflammatory sites (1-3). The chemokine family shares a common pattern of disulfide bonds and a common overall
tertiary structure as shown in solution or crystallographically determined structures (4-6). The chemokine family is divided into four
subfamilies based on the number of residues between the first and
second cysteine. Among the chemokines, the CC chemokine monocyte
chemoattracant-1 (MCP-1)1 has
received a great deal of attention because of its involvement in
diseases. MCP-1 expression is elevated in the inflamed synovium of
rheumatoid arthritis, and its expression is reduced by anti-arthritic drugs (7, 8). Other work has shown that MCP-1 is elevated in asthmatic
patients; the amount of elevation correlates with symptoms. MCP-1
expression is suppressed by successful immunotheraphy (9-12). MCP-1 is
elevated in human atherosclerosis and is elevated by consumption of
high fat diets in monkeys and rabbits (13, 14). Treatment with MCP-1
neutralizing antibodies or other biological antagonists can reduce
inflammation in a number of animal models; these include lung granuloma
(15, 16), lipopolysaccharide-induced death (17),
glomerulonephritis (17), delay type hypersensitivity in the skin (18),
and adjuvant arthritis in MRL mice (19). Transgenic over
expression of MCP-1 induces monocyte and T-cell migration to the site
of expression in skin (20), lung (21), brain (22), and pancreas (23).
Mice genetically deleted for the MCP-1 or its receptor CCR2 are
protected from inflammation and atherosclerosis driven by bacterial
products and high fat diets (24-26). These findings suggest that MCP-1
functions in vivo as a monocyte and T-cell attractant and
that MCP-1 is present and elevated during disease. These findings also
demonstrate that modulation of MCP-1 expression or activity will be
beneficial in treating inflammatory diseases.
Because of the involvement of MCP-1 in pathophysiological inflammatory
diseases, we initiated a program to discover small molecule antagonists
of the MCP-1 receptor. These efforts lead to the identification of
several classes of compounds that inhibited MCP-1 binding to its
receptor with affinities between 1 and 15 µM; this report
details the properties of one class of inhibitors. We examined several
of these compounds in detail with regard to binding affinity and
antagonist function at several receptor sites. One class, the
spiropiperidines, has affinities that range from 60 nM to
inactive and has distinct structure activity relationships; we wished
to understand the mechanism of action for these compounds and model
their interaction with CCR2 receptor. Using several types of function
studies, we examined the effect of the compounds on several
post-receptor signaling pathways simulated by MCP-1 and another CCR2
ligand, MCP-3. We also examined the effect of certain site-directed
receptor mutations on the binding affinity of MCP-1 and several
compounds. These studies revealed an unappreciated similarity between
binding of compounds to biogenic-amine receptors and their binding to
MCP-1 receptor. We have built models of the CCR2 receptor incorporating
the mutagenesis data, the spiropiperidine structure activity
relationships, and ligand binding and signaling models that we have
previously presented (27, 28). These observations provide a model to
understand the interaction of the small molecule chemokine antagonists
with chemokine receptors and provide a path to the design of better antagonists.
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MATERIALS AND METHODS |
Compound Synthesis--
Spiropiperidines were prepared by adding
the appropriate ortho-lithiated
tert-butoxycarbonyl-protected aniline (prepared from the tert-butoxycarbonyl-aniline and 2.2 eq of
tert-butyl lithium in tetrahydrofuran at
78 °C)
to the N-tert-butoxycarbonyl-4-piperidone followed by a spontaneous cyclization under (29). Yields averaged 60%
after chromatography. Subsequent deprotection of the
tert-butoxycarbonyl-protected spirobenzoxazinones using
standard procedure (20 eq of trifluoroacetic acid in
CH2Cl2) followed by alkylation with the
appropriate alkyl bromide yielded the desired compounds (5 eq of
Hunig's base and 1.2 eq of the bromide in acetonitrile at reflux,
5 h. The compounds were purified by column chromatography or by
preparative thin layer chromatography using 5:4:1
hexanes/CH2Cl2/MeOH mixtures. Each sample was
>98% pure.
For preparation of 3-chlorobenzyl 2-pyrrole carboxylic acid,
2-trifluoroacetylpyrrole (25 g, 0.12 mol) was combined with sodium hydride (6.2 g, 015 mol) in dimethylformamide (300 ml) at 0 °C. 3-Chlorobenzylbromide was added, and the resulting mixture was stirred
for about 15 h at room temperature. The reaction was quenched with
water followed by dilute sodium hydroxide (3 M, 80 ml) and stirred for 2 h. Additional sodium hydroxide was added, and the water layer was washed with ether. Addition of 6 M HCl to
the aqueous phase until the pH was 2 resulted in the precipitation of
the desired carboxylic acid (RS-136270). The compound was filtered and
washed with cold water. The crude acid was dissolved in
CH2Cl2, and decolorizing charcoal was added.
The mixture was stirred on a steam bath and concentrated to 800 ml. The
solution was filtered and placed in a refrigerator for 10 days.
Filtration and washing with cold ether then afforded 18 g of the
pure carboxylic acid (>95%). All compounds were characterized by NMR
spectroscopy (1H and 13C), IR spectroscopy,
mass spectroscopy, melting point, and elemental analysis; the data were
consistent with the desired structure.
Binding Assay--
A detailed description of the binding assay
is described in a previous manuscript (30). Briefly, binding was
measured using membranes prepared from two cell lines, THP-1 and
CCR2-CHL cells. Each competition assay (Table
I) was composed of cell membranes, 50 pM 125I-MCP, MCP buffer, protease
inhibitors, and test compound.
Equilibrium was achieved by incubation at
28 °C for 90 min. Membrane-bound 125I-MCP was collected
by filtration through GF/B filters presoaked in polyethyleneimine and
bovine serum albumin, followed by four rapid washes with approximately
0.5 ml of ice-cold buffer containing 0.5 M NaCl and 10 mM HEPES, pH 7.4. MCP buffer consists of 50 mM
HEPES, pH 7.2, 1 mM CaCl2, 5 mM
MgCl2, and 0.1% bovine serum albumin. Protease inhibitors
include 0.1 mM phenylmethylsulfonyl fluoride, 1 µM leupeptin, and 0.35 mg/ml pepstatin. THP-1 cells are a
human monocyte cell line (ATCC TIP-202) that express both CCR1 and
CCR2. CCR2-CHL cells are Chinese hamster lung cells (ATCC CRL-1657)
that have been stably transformed with an expression vector bearing the
human CCR2b receptor (30).
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Table I
Binding affinity of cell clones transfected with mutant and wild type
MCP-1 receptors and the total and surface expression of the receptors
The column labeled surface expression is the mean fold increase in
fluorescence intensity of each cell line over untransfected cells;
untransfected cells have a mean of 1 ± 0.5. The error statistic
is the standard deviation for the number of replicate experiments shown
in parentheses.
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The other binding assays reported in Table I were performed as
described above with appropriate changes in radioligand, buffer, temperature, and cell or tissue source. Thus, CCR1 and CXCR1 binding assays used 50 pM 125I-MIP1a or
125I-interleukin-8, a buffer composed of 50 mM
HEPES, 5 mM MgCl2, 1 mM
CaCl2, 0.1% bovine serum albumin and a pH of 7.4, a
temperature of 28 °C and 100,000 CHO-CCR1 cells or CHO-CXCR1 cells.
These are transformed CHO lines containing the pSW104 vector containing the human CCR1 cDNA or the human CXCR1 cDNA. The
1a or
1b binding assay used 300 pM [3H]prazosin a buffer composed of 50 mM Tris-Cl, 0.5 mM EDTA, pH 7.4, a temperature
of 28 °C, and 50,000 CHO-
1a or CHO-
1d
membranes from transformed CHO cell lines containing the pSW104 vector
containing the human
1a or
1d adrenergic
receptor. The 5HT1a binding assay used 300 pM
[3H]8-hydroxyaminopropylaminotetralin, a buffer
composed of 50 mM Tris-Cl, 0.5 mM EDTA, pH 7.4, a temperature of 32 °C, and rat cortex membranes containing 0.25 mg/ml protein. All the binding buffers also contained 100 µM phenylmethylsulfonyl fluoride and 1 µM
leupeptin. The biogenic amine binding assays used 0.1 M
NaCl to wash the glass fiber filters, and the chemokine assay filters were washed as for the CCR2 assay. The cell lines bearing biogenic amine receptors were a kind gift from David Chang and Rick Salazar (Roche Bioscience).
Freeze-thaw lysed L1.2 cell clones bearing the wild type receptor and
mutant receptors were used for saturation binding experiments with
MCP-1 (Table I) and for competition experiments with MCP-1 and various
compounds (Table II). Freeze-thaw lysed
cells were prepared from washed centrifuge-packed cell pellets, which
had been stored at -80 °C prior to binding analysis. These cells
were thawed at room temperature and refrozen once. Between 1 × 106 and 1 × 105 freeze thawed cells were
used for saturation binding experiments. These experiments used
125I-MCP-1 at 440 Ci/mmol and varied the MCP-1
concentration between 3 and 0.023 nM. Data analysis for
these saturation experiments was performed as described previously
(31). Competition experiments using the L1.2 cell bearing mutant
receptors also used freeze-thaw lysed cells; 1 × 105
wild type bearing cells and 5 × 105 mutation bearing
cells were used for the competition experiments. These experiments used
125I-MCP-1 at 440 Ci/mmol and MCP-1 concentrations of 50 pM for wild type bearing cells and 100 pM for
cells bearing mutations. Data analysis of these type of competition was
performed as described by Jarnagin et al. (31). The buffers
used for these experiments as well as the equilibration times and
temperatures were identical to those used with THP-1 cells.
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Table II
Summary of the displacement potencies of MCP-1, RS-102895, RS-504393,
and RS-136270 for various Asp284 and Glu291 mutant
MCP-1 receptors and the wild type receptor
Columns labeled Ratio are the ratio of the measured affinity for the
mutant receptor to the wild type receptor. The error statistic is the
standard deviation for the number of replicate experiments shown in
parentheses.
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Intracellular Signaling and Chemotaxis--
The methods for
measurement of intracellular signaling and chemotaxis have been
described in detail in our previous paper (32). Briefly, cytosolic
calcium influx was measured in CCR2-CHL cells loaded with the
fluorescent dye Fura-2-AM. Quantitation of signal intensity used the
integrated signal intensity for 82 s after the addition of
chemokine and thus has units of M·s. Antagonism by
various compounds of calcium influx was measured using an approximate ED50 dose of MCP-1 (3 nM) and an approximate
ED25 dose for MCP-3 (5 nM).
Chemotaxis was measured over 1 h using THP-1-5X cells in a
96-well Boyden chamber apparatus. Cell migration through the
polycarbonate filter was quantified by fluorescent staining using
propidium iodide in 0.1% Triton X-100. These assays typically gave
stimulated to unstimulated migration of 6-fold, range 4-10-fold, using
a maximally effective concentration of MCP-1. Chemotaxis antagonist measurements used 3 nM MCP-1 or RANTES; these
concentrations are near the ED95 attractant concentration
for MCP-1 and for RANTES as agonists. The data are expressed by
normalization to the uninhibited migration caused by the agonist
chemokine. The antagonist was present in both chambers of the Boyden apparatus.
Adenylate cyclase inhibition was measured using a reporter linked gene
transcription assay; in which firefly luciferase was attached 3' to a
cyclic-AMP response enhancer, CREB; these elements were contained
within the cell clone, CHO-K1-CCR2b-cAMP-Luc-neo-22. The assay measured
adenylate cyclase inhibition after 6 h of exposure to the
appropriate compounds in the presence of 2.0 µM forskolin and 5 nM MCP-1. This assay reflects biochemical
measurements of cAMP production with a correlation coefficient of 0.96 (32).
Preparation, Isolation, and Characterization of Mutant Receptor
Encoding cDNA and Verification of Transfectant Receptor
Sequence--
Mutations were introduced into a pcDNA3.1 vector
containing an amino-terminal FLAG-tagged hCCR2 receptor (33) using a
polymerase chain reaction method similar to that of Jarnagin et
al. (31). This method amplifies the region of receptor sequence
immediately surrounding the target mutation site; thus it avoids
amplification of the whole receptor. The region of the plasmid DNA
amplified during the mutagenesis procedure was completely sequenced to
verify the presence of the mutation and confirm the absence of
unintended mutations.
Clones of L1.2 cells bearing a single mutant receptor were further
checked after cloning to confirm that each isolated cell line contained
DNA encoding the desired mutation. Genomic DNA from the clone was
isolated using a QIAamp blood DNA isolation kit (Qiagen GmbH, Hilden
Germany). The genomic DNA was used as the template in polymerase chain
reaction reactions using primers encoded by the T7 region of the
pCDNA3.1 vector and a 3' primer within pCDNA3.1 vector,
5'-TAGAAGGCACAGTCGAGG. The polymerase chain reaction product was
further purified using Geneclean columns (Bio101, La Jolla, CA) and
then sequenced. The mutations in the third extracellular loop and at
the top of the seventh transmembrane domain were sequenced using a
primer that included the receptor stop codon, 5'-CTA CGC GTC GAC TTA
TAA ACC AGC CGA G. These sequences confirmed that all of the clonal
lines reported contained the desired mutant receptor.
Preparation and Isolation of L1.2 Transfectants--
L1.2 cells
were a gift from E. Butcher (Stanford University, CA). Untransfected
L1.2 cells were grown at 37 °C in humidified 5% CO2 and
in RPMI 1640 medium (Life Technologies, Inc.) containing 10% (v/v)
heat-inactivated fetal calf serum (Hyclone, Logan UT), 2 mM
minimal essential medium sodium-pyruvate (Life Technologies, Inc.), 55 µM
-mercaptoethanol, 50 units/ml penicillin
G, and 50 µg/ml streptomycin (Life Technologies, Inc.). Transfected
stable L1.2 cells were grown under the same conditions with additional 400 µg/ml Geneticin® (G-418, Life Technologies, Inc). L1.2 cells were transfected for 4 h at 37 °C using 30 µg of
LipofectAMINE and 5 µg of plasmid DNA/2 × 106 cells
in Opti-MEM serum-free medium. The cells were allowed to recover for
24 h in RPMI medium containing 15% fetal calf serum. After a
washing, the cells were cultured for 6 days in RPMI medium containing
1000 µg/ml G-418. Cells were maintained for two passages in 400 µg/ml G-418 prior to fluorescence-activated cell sorter-based cell cloning.
L1.2 cells express chemokine receptors more efficiently following
incubation of the cells for 5.5 h with 2 mM sodium
butyrate in RPMI medium at a density of 1 × 105
cells/ml. The treatment was performed prior to all receptor
quantitation, affinity determinations, and cell cloning steps. This
treatment increased the cell surface receptor expression by 6.9-fold as measured by epitope tag-specific fluorescent antibody staining; the
treatment increased MCP-1 binding to total cell membranes by 4.1-fold,
from 5100 receptors/cell to 21,000 receptors/cell.
Immunostaining of Cells--
Before every study the expression
of the MCP-1 receptor was monitored by flow cytometry. For the
expression analysis, an aliquot of the induced cells (5 × 105) was centrifuged for 5 min at 200 × g.
The supernatant was removed, and the pellet was resuspended in 250 µl
of RPMI 1640 medium with 10% fetal calf serum and 1 µg of
Anti-FLAG® M1 monoclonal antibody (Eastman Kodak Co.). The cells and
the primary antibody were incubated for 1 h at room temperature
with shaking. The cells were than centrifuged for 5 min at 500 × g. After the supernatant was removed the pellet was
resuspended in 1 ml of the RPMI 1640 medium and washed. The pellet was
then resuspended in 250 µl of RPMI 1640 (+10% fetal calf serum) and
5.6 µg of fluorescein isothiocyanate-conjugated goat
F(ab')2, anti-mouse IgG was added (CALTAG Laboratories,
Burlingame, CA). The cell antibody mixture was incubated in the dark
for 30 min with shaking. After washing once, 5 µg/ml propidium iodide was added. To reduce clogging of the cytometer nozzle, the cell suspension was passed through a 70-µm nylon cell strainer (Becton Dickinson, San Jose, CA). During individual live cell cloning steps,
cells with high fluorescence were put in single wells of 96-well tissue
culture plates containing complete growth medium and conditioned growth
medium in a ratio of 5:1. Conditioned medium is L1.2 cell culture
medium in which tissue L1.2 cells had previously been grown; the medium
was prepared by filtration through a sterile 0.2-µm filter after
removal of cells.
Statistical Analysis of Data--
The data were analyzed for
statistical significance by the use of pKd or
pIC50; significance determined using analysis of variance
is explained in the footnotes to the tables. The use of
pKd and pIC50 is justified by our
examination of the distribution of Kd and
IC50 values determined for the experiments of these types
(32); the data are log normally distributed, as expected for the ratio
definition of Kd.
Molecular Modeling--
The primary sequence of more than 100 G-protien-coupled receptors including CCR2 were aligned using the
Needleman-Wunsch multi-sequence alignment as implemented in the PILEUP
command in GCG (receptors that bind peptides and other lignads were
included). The sequences were further aligned manually with special
attention to transmembrane regions. The recently published
bacteriorhodopsin structure and low resolution structures of rhodopsin
was used as a template for the modeling of human CCR2 receptor (27, 28,
34). The methods used for building these first models are described
elsewhere (35). Briefly, the appropriate residues of the helices of the rhodopsin template were changed to the corresponding amino acid of the
CCR2. The amino acid side chains were energy minimized and placed in a
reasonable conformation. For this study the loops were discarded, and
only the transmembrane bundle was used in the small molecule antagonist
binding site analysis. The final structure was minimized with a limited
cycle using the Discover software (Biosym) and CVFF force field.
Only a few cycles are used to improve the stereochemistry of the model
and to remove the unfavorable clashes.
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RESULTS |
Identification and Modification of Small Molecule MCP-1 Receptor
Antagonists--
Because of the involvement of MCP-1 in several
inflammatory pathologies, we began a search to find small molecule
antagonists of the MCP-1 receptor. A large chemical library was
screened using a high throughput radioligand binding and a secondary
chemotaxis inhibition assay. This screen identified about 10 structurally diverse classes of small molecule inhibitor with
affinities between 5 and 30 µM for receptor binding and
chemotaxis inhibition.
Inhibitor Structure Activity Relationships--
Two of these
classes were judged to be drug-like and amenable to medicinal chemistry
optimization. The spiropiperidine (SP) class, represented by RS-21825,
RS-29634, RS-102895, and RS-504393 (Fig.
1), had a distinct structure activity
relationship and affinities that spanned IC50 values from
90 nM to completely inactive compounds. The central
features of this class includes a pharmacophore defined by a basic
nitrogen in a piperidine ring; another important feature is the
orthogonal relationship between a phenyl urethane system and a
piperidine, imposed by a spiro-carbon atom. The hydrogen bonding
potential provided by a urethane moiety is very important. Another
important feature is the restriction to small moieties for substituents
on the phenyl-urethane heterocycle. Finally, a large range of
hydrophobicities and sizes are acceptable for substituents in the
phenethyl portion of the inhibitors, RS-504393 for example.

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Fig. 1.
Structure and affinities of several small
molecule inhibitors of chemokine binding; their affinities for biogenic
amine receptors and their potencies as chemotaxis inhibitors driven by
MCP-1 or RANTES. MCP-1 binding was measured in THP-1 cells using
125I-MCP-1. MIP1a binding was measured in a transfected
cell line CHO-CCR1 using 125I-MIP1a. The biogenic amine
binding receptors were measured using transfected cell lines bearing
the human 1a and 1d receptors or a tissue
preparation for the 5HT1a receptor, rat brain cortex. Characteristic
radioligands appropriate for each receptor were used: prazosin for
1a and 1d receptors or
8-hydroxyaminopropylaminotetralin for 5HT1a receptors.
Chemotaxis inhibition was measured using THP-1-5X strain of THP-1
cells and 3 nM MCP-1 or RANTES as the chemoattractant. All
measurements are reported in nM, and the error statistic is
the standard deviation for the number of replicate experiments shown in
parentheses. ND, not determined.
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The 2-carboxy-pyrrole (2CP) class, represented by RS-136270 in Fig. 1,
had a less distinct and weak structure activity relationship. The best
compounds had affinities near 5 µM. Two-carboxypyrroles and 2-carboxyindoles were acceptable. Substituents at position three or
four (pyrroles) were acceptable if small; however, large substituents
of any kind were not well tolerated. Benzyl substitution of the
nitrogen was required for activity, and halogen substituents on the
ring were well tolerated. Large benzyl substituents were not well
tolerated. The requirement for a carboxylic acid at position 2 was absolute.
Inhibition of Chemotaxis by SP and 2CP Class--
All of the
compounds shown in Fig. 1 inhibited chemotaxis driven by MCP-1. The
chemotaxis inhibitor concentrations of the spiropiperidine class are
well correlated with the binding affinities and thus with the
binding-derived structure activity relationship. Similar close
correlation between binding affinities, structure and chemotaxis were
observed for the carboxypyrrole and carboxyindole class (data not
shown). Fig. 2A shows
representative dose response relationships for chemotaxis inhibition.
These curves are single phase curves with Hill slopes close to 1, suggesting that the compounds interact with a single population of
receptors. Figs. 1 and 2A also illustrate that although
these compounds are potent inhibitors of MCP-1-driven chemotaxis
mediated by CCR2, none of the compounds are potent inhibitors of
RANTES-driven chemotaxis mediated by CCR1. The best spiropiperidine,
RS-505393, was 8000-fold better as a MCP-1-driven chemotaxis inhibitor
than as a RANTES-driven chemotaxis inhibitor (Fig. 1). The highest
affinity CCR2 binder, RS-504393, was a 700-fold better binder on CCR2
than CCR1. Neither class of compound, SP or 2CP, displayed any affinity
for CXCR1 or CCR3 (not shown). Thus, both classes of compounds are
highly selective among chemokine receptors.

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Fig. 2.
The spiropiperidine class and the
carboxypyrrole class of inhibitors block MCP-1-driven chemotaxis and
MCP-1-driven adenylate cyclase suppression. A,
inhibition of chemotaxis of THP-1 cells to the attractants MCP-1 (3 nM) or RANTES (3 nM) by several spiropiperidine
drugs. Each data point is the mean of quadruplicate data points; the
standard deviations for the two curves shown are
representative of all the curves. The data shown are representative of
experiments repeated on from 2-6 separate days. B, the
antagonistic effect of spiropiperidine and carboxypyrrole compounds on
MCP-1 caused inhibition of cAMP-dependent luciferase
expression. The left-most curve shows the inhibition of
luciferase expression (cAMP-dependent reporter) caused by
MCP-1. The three right-most curves use RS-102895, RS-136270,
and RS-29634 as antagonists of MCP-1 (5 nM). In both the
antagonism experiments and the MCP-1 control, 2.0 µM
forskolin was used to stimulate cAMP production. The data are presented
as a percentage of the luciferase expression caused by 2.0 µM forskolin (100%) and the background luciferase
expression in untreated cells (0%). The data points shown are the
means of triplicate determinations. The standard deviations are about
10% and are omitted for clarity. The curves shown are representative
of dose titrations repeated from two to four times.
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Inhibition of MCP-1-stimulated cAMP Inhibition--
Fig.
2B illustrates that both SP compounds and 2CP compounds
inhibit MCP-1-stimulated cAMP inhibition, measured here using a
pentameric cAMP responsive promoter element, CREB binding element, linked to a reporter cDNA, luciferase. Previous studies (30, 32)
have demonstrated that this reporter assay accurately reflects cAMP
changes in these cells. The rank order of potencies observed for these
two SP compounds, RS-29634 and RS-102895, and one 2CP compound are very
similar to their rank order receptor binding and chemotaxis inhibition potency.
Inhibition of MCP-1- and MCP-3-stimulated Calcium Influx--
Fig.
3 demonstrates that both SP compounds and
2CP compounds inhibit MCP-1- and MCP-3-stimulated calcium influx into
CCR2-CHL cells. The IC50 values for RS-504393, RS102895,
and RS-136270 as MCP-1 inhibitors are, respectively, 35 ± 9, 32 ± 7, and 260 ± 45 nM, and as MCP-3
inhibitors they are 160 ± 26, 130 ± 27, and 500 ± 170 nM. We note that as antagonists of calcium flux, RS-504393
and RS-102895 do not show the 3-fold separation in potency that is
exhibited by these two compounds in CCR2 binding assays and chemotaxis
antagonist assays. This finding may reflect an equal ability of these
two inhibitors to block formation of a conformation of the receptor
that is able to stimulate calcium influx. Thus both classes of
compounds inhibit calcium influx caused by either MCP-1 or MCP-3. None
of these compounds were able to stimulate calcium influx at up to 50 µM for RS-504393 and RS-102895 or 20 µM for
RS-136270 (data not shown). They are not agonists for calcium influx,
adenylate cyclase inhibition, or chemotaxis. These small molecular
weight ligands block all post receptor events and do not distinguish
between calcium stimulatory receptor conformations caused by either
CCR2 agonist, MCP-1, or MCP-3.

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Fig. 3.
The spiropiperidine class and the
carboxypyrrole class of inhibitors block cytosolic calcium influx
caused by MCP-1 or MCP-3. A, inhibition of MCP-1 (3 nM) stimulated calcium influx by two spiropiperidines,
RS-102895 and RS-504393, and by a carboxypyrrole, RS-136270.
B, inhibition of MCP-3 (5 nM) stimulated calcium
influx by RS-102895, RS-504393, and RS-136270. The influx was measured
in the transformed cell line CCR2-CHL cells. The antagonist data
(right axis) in both panels are plotted as the percentages
calcium influx caused by MCP-1 (3 nM) or MCP-3 (5 nM). The data shown are single determinations and are
representative of dose titrations repeated two or three times. In both
panels the left-most curve shows the integrated calcium
influx (left axis) dose response for the chemokine (MCP-1 in
A and MCP-3 in B).
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Biogenic Amine Binding Properties of the SP and 2CP
Class--
Despite the high chemokine receptor specificity exhibited
by the spiropiperidine compounds, these compounds are potent
1-adrenergic receptor blockers (Fig. 1); lower
affinities were observed for other types of adrenergic receptors,
2 and
(not shown). In addition several other GPC-7TM
receptors, the serotonin 5HT1a and µ-opioid receptors for
example, also bound SP compounds. In the case of the serotonergic
receptors, structures with improved CCR2 affinity had decreased
5HT1a (Fig. 1). A remarkable property of the SP class is
its high affinity for
-adrenergic receptors, particularly
1a receptors and to a lesser extent
1d
receptors. Affinity at
1b receptors was much lower (not
shown). Affinity at
1d sites became less because the
compounds had improved affinity on CCR2 (Fig. 1). Affinity at
1a receptors also decreased as CCR2 affinity increased;
however, because the
1a affinity of the initial lead
compound, RS-21825, was 5.6 nM, the decrease in
1a affinity was insufficient to eliminate
1a affinity of the SP compounds. The 2CP class of
compounds had no significant affinity for biogenic amine receptors
(Fig. 1).
Selection of Residues Glu291 and Asp284 for
Mutagenesis Studies--
The findings of a strong requirement for a
basic nitrogen in the SP class of blockers suggests that an acidic
residue on CCR2 might provide part of the interaction site. The
alignment of several chemokine receptors (Fig.
4) highlights an unusual feature of chemokine receptors; chemokine receptors contain an acidic glutamic acid, Glu291, 1.5-2 turns within TM-7. Acidic residues are
rare in this position in GPC-7TM receptors (36, 37). We also noted in
our sequence alignment Asp284. This residue is located two
helical turns above and on the same helical face as Glu291
and is also conserved between chemokine receptors. Thus, we chose to
make mutations of CCR2 at Glu291 and Asp284. We
made mutations to alanine to eliminate the residues side chain or made
changes to asparagine or glutamine to remove the charge but maintain
the hydrogen bonding potential of the side chain.

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Fig. 4.
Alignment of 14 human chemokine
receptors from the middle of transmembrane-6 through
transmembrane-7. A, the transmembrane region-7 acidic
residue unique to chemokine receptors is shown in bold type
(residue 291 in CCR2). The residue two helical turns above the TM-7
acidic residue is also shown in bold type (residue 284 in
CCR2). B, schematic illustration showing the location of all
the extracellular and transmembrane localized acidic residues
(black background with white letters). The
probable topology and disulfide bonding pattern of CCR2 is shown, as
are potential helical transmembrane and juxtamembrane regions
(shaded background).
|
|
Creation and Characterization of Glu291 and
Asp284 Mutants--
The mutant receptors were made in an
amino-terminal FLAG epitope-tagged receptor (38) and then transfected
into L1.2 cells. Stable clones expressing moderate receptor densities
(12-36 thousand receptors/cell) were isolated using flow cytometry.
Fig. 5 shows representative cell
population distributions of three important cell lines, epitope-tagged
wild type receptors and E291A and E291Q mutant receptors. This figure
demonstrates that the various stable mutations have similar population
distributions and surface staining with anti-epitope antibody to mean
levels 50-250 times the staining observed in untransfected L1.2 cells.
However, we note with interest (Table I) that the only rough
correlation between the surface receptor staining measured by flow
cytometry and the binding assay measured receptor density, particularly
for the D284A receptor mutant (Table I). The crudeness of the
correlation may reflect a difference in intracellular membrane system
distribution for the various mutants and the difference in sampling
inherent in the two assay methods.

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Fig. 5.
Transfected cell lines bearing mutant and
wild type MCP-1 receptors have substantial expression of the
epitope-tagged MCP-1 receptor on their surface. Shaded,
number of cells (count) versus fluorescence intensity (FL-1
height) for untransfected L1.2 cells; closely spaced dots,
wild type CCR2 bearing cell line; widely spaced dots, E291A bearing
cell line; solid line, E291Q bearing cell line. Three thousand cells
from each line were analyzed.
|
|
The use of amino-terminal FLAG epitope-tagged MCP-1 receptor does not
affect the MCP-1 binding affinity of wild type receptors. The wild type
receptor, naturally expressed in the human monocyte cell line THP-1,
binds MCP-1 with a Kd of 0.035 ± 0.02 nM (32), whereas the epitope-tagged receptors bind MCP-1
with a Kd of 0.06 ± 0.01 (Table I and Ref.
38).
Binding Affinities of Receptor Mutants Measured by
Saturation--
To fully characterize the mutant receptors, we
preformed saturation binding assays for wild type receptor bearing cell
lines as well as lines bearing D284N, E291Q, and D284A/E291A (Table I).
For these mutant receptors affinities ranged between 0.06 nM, for wild type to 1.53 nM for D284N. The
double receptor mutations, such as D284A/E291A, have higher affinities
than are measurable in saturation binding experiments using available
radioactive ligands.
However, four mutant receptors have substantial surface expression
(Table I) but bind with an affinity of less than 3 nM, the
lowest affinity detectable in these saturation binding assays. These
mutants, D284K, D284A/E291A, D284N/E291Q, D284K/E291K, and DOM4A, are well expressed on the cell surface with staining of 53-177-fold over untransfected control cells (Table I). Their population distributions were all quite similar to wild type receptors and the other mutants shown in Fig. 5. These findings indicate that
these mutant receptors are cell surface localized but have very low
MCP-1 affinities.
Binding Affinities of Receptor Mutants Measured Using
Competition--
To more fully characterize the mutants and to measure
the effect of the mutations on drug binding, competition binding
experiments were performed. Table II and the example graphs of Fig.
6 show that mutations at positions 284 and 291 significantly reduced MCP-1 binding affinity; however, none of
these changes completely eliminated the ability of MCP-1 to bind to the
receptor. The most detrimental combination of mutations, the double
mutant D284N/E291Q, reduced the binding affinity by 190-fold to 11.3 nM. Other single amino acid mutants had reduced binding
affinity by 4.8-8.7-fold. This observation, along with the ligand
mutagenesis data showing the critical importance of certain basic
residues on the MCP-1 surface (30), suggests that Asp284 or
Glu291 may be a site for receptor ligand interaction with
some of the MCP-1 basic residues. A model of this interaction has been
presented (30).

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Fig. 6.
Displacement of [125I]MCP-1
from wild type and several mutant MCP-1 receptors by MCP-1, and by the
spiropiperidines RS-102895 or RS-504393 or by RS-136270, a
carboxypyrrole. The data points shown are the means of triplicate
determinations; the standard deviations for each point are 10-15% and
are omitted for clarity. Each curve representative of dose titrations
that were repeated three or four times.
|
|
Binding Affinities of Mutants for Small Molecular Weight
Antagonists--
The ability of these mutants to bind MCP-1 allowed
competition measurements of binding affinity of several of the small
molecule antagonists. Fig. 6 and the summary data presented in Table II show that the spiropiperidine compounds, RS-102895 and RS-504393, bind
extremely poorly when Glu291 is changed to alanine
(affinity reduced by 610-fold) or to glutamine (affinity reduced by
250-fold). These findings suggest that the negative charge of glutamic
acid is important because glutamine has hydrogen bonding potential
similar to that of glutamic acid, yet E291Q has significantly reduced
binding affinity with RS-504393, 250-fold. In contrast to the
spiropiperidine compounds, the 2-carboxypyrroles, represented by
RS-136270, bind to all of the single acidic amino acid mutant receptors
with affinities similar to wild type receptors (Fig. 6). Together these
observations suggest that Glu291 interacts with the basic
nitrogen of SP molecules.
Residue Asp284 mutants bind SP compounds with affinities
that are only very modestly changed from wild type affinities, which is
in contrast to the large changes in affinity caused by mutations at
residue Glu291 (Table II). Of the single Asp284
mutations only the affinity of RS-504393 was significantly affected by
the change to alanine; however, the magnitude of reduction in affinity
of this mutant (3.9-fold) is small when compared with the magnitude of
Glu291 changes (610- and 250-fold). Thus it would seem that
Asp284 contributes only very slightly to a SP compound
binding pocket.
The 2CP compound, RS-136270 was unaffected by any of the single
mutations at residues 284 or 291 (Table II). Thus these acidic residues
are not required for 2CP binding, and the contrast in binding contact
requirements compared with SP compounds suggests very different binding
sites for these two classes of antagonists.
The double mutations to alanine and the amides, D284A/E291A and
D284N/E291Q, respectively, have undetectable affinities for the SP
class of compounds and are the most reduced in binding affinity for
MCP-1. Thus, this combination of residues is important for both the SP
and the MCP-1 binding interaction. In contrast, the double mutations to
alanine and to the amides, D284A/E291A and D284N/E291Q, affect the 2CP
compounds binding only modestly, 28- and 2.7-fold, respectively (Table
II); these findings highlight the clear distinction between the binding
mode of SP compounds and 2CP compounds.
 |
DISCUSSION |
Structure-Activity Relationship of SP Compounds--
After
identification of the spiropiperidines as CCR2 ligands we were able to
define several central features of the structure-activity relationship of these compounds. The spiro arrangement between a
phenyl urethane moiety and a piperidine is one of the striking features. The piperidine ring was di-substituted at the 4 position with
a spiro-phenyl urethane system. Ring systems other than piperidine and
straight chain substitutions of the piperidine system were inactive or
quite reduced in affinity. In all the more potent analogs, the nitrogen
was connected via an aliphatic chain to an aromatic system. For the SP
class, the aromatic system-binding pocket was tolerant of a wide range
of substituents of a variety of sizes, provided that they were
nonpolar. Polar substituents were not well tolerated; this implied a
binding pocket with substantial hydrophobicity. This phenyl urethane
system was mostly intolerant of substitution, particularly large
moieties. The urethane moiety could not be replaced or altered without
significant losses in activity. The strength of this structure activity
relationship and its defined preference for particular sizes and
polarities in different parts of the molecule implies several different
steric constraints around the phenyl-urethane portion. The absolute
requirement for the urethane system, with the nitrogen bearing a
hydrogen, implies the presence of a hydrogen bond partner for the
urethane nitrogen in the binding pocket. Possibly, the most significant feature of this structure activity relationship is the absolute requirement for a tertiary nitrogen, preferably contained within a
piperidine ring. Alterations of the nitrogen pKa
lead to complete loss of binding affinity. These features suggest that the register of the compound within its binding site was controlled by
an acid-base interaction.
Our starting point of the optimization of these compounds was RS-21825
(IC50, 11.4 µM), and we were able to make
steady improvements by increasing the affinity to RS-504393, IC50 90 nM. The discovery of small molecular weight CCR2
antagonists of several different classes was gratifying because, when
we started this effort, no drug-like chemokine receptor antagonist had
been revealed. In addition, we and others had suggested that the ligand
was too big (molecular weight of 8,600) to allow small molecular
weight compounds to inhibit its binding. This view held that the
receptor ligand complex involved several thousand square angstroms of
surface and was spread over a large flat interaction interface similar in nature to the surfaces defined for growth hormone and its receptor (39) or antibody-protein interactions surfaces (40). Clearly these
results demonstrate the feasibility of development of MCP-1 antagonists, and they suggest that some part of the essential interaction space from MCP-1 contains a crevice or pocket with features
necessary to bind small molecular weight inhibitors.
Structure-Activity Relationship of 2-CP Compounds--
In contrast
to the substantial improvements in affinity we obtained in the SP
inhibitor class, affinities of the 2-CP inhibitor class improved by
less than 4-fold from the initial screening hit (20 µM).
This class of compounds had no requirement for a basic nitrogen, nor
did it possess distinct geometric requirements imposed by a
spiro-center or the molecular length and size requirements displayed by
the SP inhibitor class. The absolute requirement for an acidic residue
further distinguished the 2CP compounds from the SP compounds. These
contrasting features clearly hint that the binding sites on CCR2 for SP
compounds and 2CP compounds are distinct. Given the extraordinary
contrast, we speculate that the sites were spacially distinct and
certainly controlled by opposite acid-base interactions.
Binding of SP and 2-CP Compounds to Other Chemokine
Receptors--
These groups of compounds are uniquely able to interact
with a binding pocket on CCR2 and not other chemokine receptors.
Because both classes of inhibitors are extremely weak binders to other chemokine receptors, including CXCR1, CCR1, and CCR3. Small molecular weight ligands for CCR1 and CXCR4 have been described (41-43); these
compounds have no affinity for CCR2, findings that we have corroborated.2 None of
the CCR1 or CXCR4 antagonists similar structurally to either the SP or
CP classes. Thus, inspite of the sequence similarities between the
chemokines (30-90%), their receptors (30-70%), and their conserved
overall three-dimensional structures, small molecular weight inhibitors
that distinguish the various family members can be found.
Blockade of Receptor Signaling by SP Compounds--
In addition to
inhibiting MCP-1 binding and MCP-1-driven chemotaxis, the SP compounds
are potent inhibitors of MCP-1-driven cAMP-mediated gene transcription
as well as MCP-1- or MCP-3-driven calcium influx. Furthermore, these
compounds are not agonists of MCP-1-mediated events, even at
concentrations 500 times their apparent affinities. These findings
differentiate small molecule antagonists from MCP-1 mutants that are
chemotaxis antagonists (32). These ligand-derived antagonists were of
two types; one type ( (1+9-76)hMCP) stimulates cAMP signaling through
CCR2 but is not able to stimulate chemotaxis or calcium signaling.
Another chemotaxis antagonistic ligand mutant (Y13A) was able to
stimulate cAMP signaling and calcium signaling through CCR2 but was not able to stimulate chemotaxis. These findings suggest that
ligand-derived antagonists can promote some receptor conformations that
are necessary to drive signaling of post receptor pathways but are not
able to promote the conformation necessary to drive chemotaxis. Unlike the ligand-derived antagonists, the small molecular weight inhibitors are not able to separate these functions; they block all measured post
receptor events and are not agonists. Thus they have no ability to
promote CCR2 conformations that can couple to post-receptor pathways.
These findings indicate that the small molecular weight antagonists
interact with the receptor quite differently than ligand-derived antagonists.
Receptor Distribution within Cells--
The point mutations we
made in CCR2 were designed to investigate the role of specific residues
in MCP-1 and small molecule antagonist binding; they also revealed
interesting findings regarding GPC-7TM receptor intracellular sorting.
As part of our efforts to characterize each mutant thoroughly, we
measured receptor density using two techniques. The correlation between
the two measurement methods was weak. We believe that the correlation
is affected by the difference in receptor populations measured by the
two techniques; the receptor binding assay is performed in crude cell membranes and thus measures binding competent receptors on the cell
surface or on intracellular membranes. In contrast, the cell staining
estimation of receptor density measures only surface receptors because
it is performed on unpermeablized cells. These differences could
account for the weak correlation between the methods. Several other
workers have noted that various mutant GPC-7TM receptors do not
transport well to the cell membrane (44-47). CCR2a, an alternative
splice variant of CCR2b studied here, does not efficiently localize to
the plasma membrane (48). These observations indicate that for D284A
and possibly other receptors, some part of the receptor population is
localized on intracellular membranes. These findings and the aberrant
transport of several other GPC-7TM receptors to the cell surface are
interesting and could indicate the existence of cellular membrane
sorting systems that detects individual proteins and their
conformations. Further investigation into the effect of these and
similar point mutations on the distribution of GPC-7TM receptors may
reveal novel details of the protein sorting process. Nevertheless, even
in the most dramatic example of intracellular retention, D284A,
adequate surface receptor was present to allow high quality saturation
binding experiments.
Binding of SP and 2-CP Compounds to Biogenic Amine
Receptors--
The first identified member of the SP family, RS21825,
had been previously synthesized as an
-adrenergic receptor
antagonist (29) to be used as a treatment for hypertension. In addition to
1-adrenergic receptor affinity, some members of this
compound class also had significant affinity to 5HT1,
2-adrenergic, and opioid receptors (not shown). Thus we
sought to remove the
-adrenergic and biogenic amine receptor binding
properties from this class while preserving CCR2 affinity. We were
successful at eliminating or significantly reducing the affinities of
these compounds for
1d, 5HT1a,
2, and opioid receptors while improving the affinities for CCR2. These results show that differences exist among the binding
pockets on these G-protein coupled-seven transmembrane receptors; these
differences can be exploited to convert molecules that bind to one
class into molecules that bind to another class. However, the fact that
these receptors were all from families that bind ligands that are basic
amines was very provocative. This finding of a shared basic nitrogen
motif and other results (below) formed the basis of our hypothesis of
similar ligand binding modes between SP compounds and biogenic amines.
Significance of Acidic Residues Glu291 and
Asp284--
The results of our mutagenesis experiments
establish that the SP compounds interact with Glu291 and to
a lesser extent with Asp284. The SP class of antagonists
requires a basic nitrogen for high affinity. In addition the SP class
has significant affinity for biogenic-amine receptors. These findings
suggest that the way in which SP molecules bind to CCR2 may be similar
to well characterized binding modes of biogenic amine receptor
antagonists (49-51). The distribution of acidic amino acids in CCR2
further stimulated our interest (Fig. 4); the extracellular loops and
transmembrane regions contain only 13 acidic residues. Five of the 13 residues are in an acidic cluster located in the amino terminus of the receptor. (This cluster was examined in a previous paper (30).) Parts
of this cluster are important for MCP binding, but none of it is
important for small molecular weight ligand
binding.3 The alignment of
several chemokine receptors (Fig. 4) highlights an unusual feature of
chemokine receptors; chemokine receptors contain an acidic glutamic
acid 1.5-2 turns within TM-7. Acidic residues are very rare in this
position in GPC-7TM receptors (36, 37).
Model of SP Compounds Binding to Receptor--
Models of GPC-7TM
receptors were constructed based on the low resolution electron
cryomicroscopic data available for rhodopsin (28, 34, 52) and the
higher resolution structures of bacteriorhodopsin (27). These models
predict that Glu291 of TM-7 is inside the ovoid-helical
bundle in a mirror image position to the critical binding residue of
the biogenic amine receptor, an aspartic acid from TM-3.
This binding interaction is illustrated in Fig.
7. The model depicts Glu291
interacting with the basic nitrogen of piperidine ring and the phenylurethane moiety extending the length of the ovoid bundle to
interact with TM-3 and TM-6. The phenethyl moiety extends in the
opposite direction toward TM-1 and TM-2, forming a hydrophobic pocket.
The binding pocket is 1.5 to 2 helical turns within the transmembrane
helices; and thus, no more than one-third of the extracellular portion
of the transmembrane width is occupied by the SP compound.

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Fig. 7.
Model of RS-102895 bound to the MCP-1
receptor. RS-102895 is the space-filling molecule in the center of
the bundle of helices, indicated by the ribbons. Receptor
residue Glu291 is shown as a ball and stick
structure; it is shown interacting with the basic nitrogen of the
spiropiperidine structure.
|
|
How Does the Binding of a SP Compound Prevent MCP-1 Interactions
with CCR2?--
Comparison of the model presented in Fig. 7 with our
model of MCP-1 binding to CCR2 (27) indicates that SP compounds prevent MCP-1 binding by occupying the same space, the inter-helical bundle region on the extracellular side of the receptor. Our models of the
MCP-1/CCR2 complex place the amino terminus of MCP-1 in close proximity
to Asp284 and Glu291, crossing through the same
volume of space as would be occupied by SP compounds.
In conclusion, we have discovered and optimized a class of small
organic molecule antagonists of the CCR2 receptor, spiropiperidines. These compounds are not chemotaxis agonists and do not stimulate post
receptor signaling of any kind. The compounds block MCP-1 and MCP-3
signaling through CCR2; however, they are not antagonists of CXCR1,
CCR1, or CCR3. These antagonists block the receptor by occupation of a
binding site that includes acidic residue Glu291. We
believe that the acidic moiety interacts with the piperidine basic
nitrogen. The spiropiperidine blockade of MCP binding occurs by
occupation of some of the space that CCR2-bound MCP-1 occupies. These
results provide an excellent starting point for the design of new
experiments directed toward refining theses models and may provide
insights on how to improve the affinity and specificity of small
organic ligands. Most of the chemokine receptors contain acidic
residues in TM-7 in an analogous location to CCR2. Many of the early
lead antagonists disclosed in the patent literature contain basic sites
similar to the piperidine nitrogen; thus our models may provide a
general framework to explain small molecule binding to chemokine receptors.
 |
FOOTNOTES |
*
The costs of publication of this
article were defrayed in part by the
payment of page charges. The article
must therefore be hereby marked
"advertisement" in
accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
To whom correspondence may be addressed. Tel.: 650-855-5814; Fax:
650-354-7554; E-mail: tara.mirzadegan@roche.com.
§
To whom correspondence may be addressed. Present address: Iconix
Pharmaceuticals Inc., 850 Maude Ave., Mountain View, CA 94043. Tel.: 650-567-5503; Fax: 650-526-3034; E-mail:
kjarnagin@iconixpharm.com.
Published, JBC Papers in Press, April 17, 2000, DOI 10.1074/jbc.M000692200
2
T. Mirzadegan, F. Diehl, B. Ebi, S. Bhakta, I. Polsky, D. McCarley, M. Mulkins, G. S. Weatherhead, J.-M.
Lapierre, J. Dankwardt, D. Morgans, Jr., R. Wilhelm, and K. Jarnagin,
unpublished data.
3
I. Polsky and K. Jarangin, unpublished data.
 |
ABBREVIATIONS |
The abbreviations used are:
MCP-1, monocyte
chemoattracant-1;
GPC, G-protein-coupled;
TM, transmembrane
region;
CHO, Chinese hamster ovary;
RANTES, regulated on activation
normal T cell expressed;
SP, spiropiperidine;
2CP, 2-carboxy-pyrrole.
 |
REFERENCES |
| 1.
|
Rollins, B. J.
(1996)
Mol. Med. Today
2,
198-204
|
| 2.
|
Howard, O. M. Z.,
Ben-Baruch, A.,
and Oppenheim, J. J.
(1996)
Trends Biotechnol.
14,
46-51
|
| 3.
|
Kunkel, S. L.,
Lukacs, N.,
Kasama, T.,
and Strieter, R. M.
(1996)
J. Leukocyte Biol.
59,
6-12
|
| 4.
|
Skelton, N. J.,
Aspiras, F.,
Ogez, J.,
and Schall, T. J.
(1995)
Biochemistry
34,
5329-5342
|
| 5.
|
Handel, T. M.,
and Domaille, P. J.
(1996)
Biochemistry
35,
6569-6584
|
| 6.
|
Lubkowski, J.,
Bujacz, G.,
Boque, L.,
Domaille, P. J.,
Handel, T. M.,
and Wlodawer, A.
(1997)
Nat. Struct. Biol.
4,
64-69
|
| 7.
|
Koch, A. E.,
Kunkel, S. L.,
Harlow, L. A.,
Johnson, B.,
Evanoff, H. L.,
Haines, G. K.,
Burdick, M. D.,
Pope, R. M.,
and Strieter, R. M.
(1992)
J. Clin. Invest.
90,
772-779
|
| 8.
|
Loetscher, P.,
Dewald, B.,
Baggiolini, M.,
and Seitz, M.
(1994)
Cytokine
6,
162-170
|
| 9.
|
Kurashima, K.,
Mukaida, N.,
Fujimura, M.,
Schröder, J. M.,
Matsuda, T.,
and Matsushima, K.
(1996)
J. Leukocyte Biol.
59,
313-316
|
| 10.
|
Hsieh, K. H.,
Chou, C. C.,
and Chiang, B. L.
(1996)
J. Allergy Clin. Immunol.
98,
580-587
|
| 11.
|
Alam, R.,
York, J.,
Boyars, M.,
Stafford, S.,
Grant, J. A.,
Lee, J.,
Forsythe, P.,
Sim, T.,
and Ida, N.
(1996)
Am. J. Respir. Crit. Care Med.
153,
1398-1404
|
| 12.
|
Sugiyama, Y.,
Kasahara, T.,
Mukaida, N.,
Matsushima, K.,
and Kitamura, S.
(1995)
Eur. Respir. J.
8,
1084-1090
|
| 13.
|
Nelken, N. A.,
Coughlin, S. R.,
Gordon, D.,
and Wilcox, J. N.
(1991)
J. Clin. Invest.
88,
1121-1127
|
| 14.
|
Yla-Herttuala, S.,
Lipton, B. A.,
Rosenfeld, M. E.,
Sarkioja, T.,
Yoshimura, T.,
Leonard, E. J.,
Witztum, J. L.,
and Steinberg, D.
(1991)
Proc. Natl. Acad. Sci. U. S. A.
88,
5252-5256
|
| 15.
|
Flory, C. M.,
Jones, M. L.,
and Warren, J. S.
(1993)
Lab. Invest.
69,
396-404
|
| 16.
|
Lukacs, N. W.,
Strieter, R. M.,
Warmington, K.,
Lincoln, P.,
Chensue, S. W.,
and Kunkel, S. L.
(1997)
J. Immunol.
158,
4398-4404
|
| 17.
|
Zisman, D. A.,
Kunkel, S. L.,
Strieter, R. M.,
Tsai, W. C.,
Bucknell, K.,
Wilkowski, J.,
and Standiford, T. J.
(1997)
J. Clin. Invest.
99,
2832-2836
|
| 18.
|
Rand, M. L.,
Warren, J. S.,
Mansour, M. K.,
Newman, W.,
and Ringler, D. J.
(1996)
Am. J. Pathol.
148,
855-864
|
| 19.
|
Gong, J.-H.,
Ratkay, L. G.,
Waterfield, J. D.,
and Clark-Lewis, I.
(1997)
J. Exp. Med.
186,
131-137
|
| 20.
|
Nakamura, K.,
Williams, I. R.,
and Kupper, T. S.
(1995)
J. Invest. Dermatol.
105,
635-643
|
| 21.
|
Gunn, M. D.,
Nelken, N. A.,
Liao, X.,
and Williams, L. T.
(1997)
J. Immunol.
158,
376-383
|
| 22.
|
Fuentes, M. E.,
Durham, S. K.,
Swerdel, M. R.,
Lewin, A. C.,
Barton, D. S.,
Megill, J. R.,
Bravo, R.,
and Lira, S. A.
(1995)
J. Immunol.
155,
5769-5776
|
| 23.
|
Grewal, I. S.,
Rutledge, B. J.,
Fiorillo, J. A.,
Gu, L.,
Gladue, R. P.,
Flavell, R. A.,
and Rollins, B. J.
(1997)
J. Immunol.
159,
401-408
|
| 24.
|
Boring, L.,
Gosling, J.,
Cleary, M.,
and Charo, I. F.
(1998)
Nature
394,
894-897
|
| 25.
|
Gosling, J.,
Slaymaker, S.,
Gu, L.,
Tseng, S.,
Zlot, C. H.,
Young, S. G.,
Rollins, B. J.,
and Charo, I. F.
(1999)
J. Clin. Invest.
103,
773-778
|
| 26.
|
Campbell, E. M.,
Charo, I. F.,
Kunkel, S. L.,
Strieter, R. M.,
Boring, L.,
Gosling, J.,
and Lukacs, N. W.
(1999)
J. Immunol.
163,
2160-2167
|
| 27.
|
Pebay-Peyroula, E.,
Rummel, G.,
Rosenbusch, J. P.,
and Landau, E. M.
(1997)
Science
277,
1676-1681
|
| 28.
|
Grigorieff, N.,
Ceska, T. A.,
Downing, K. H.,
Baldwin, J. M.,
and Henderson, R.
(1996)
J. Mol. Biol.
259,
393-421
|
| 29.
|
Clark, R. D.,
Caroon, J. M.,
Kluge, A. F.,
Repke, D. B.,
Roszkowski, A. P.,
Strosberg, A. M.,
Baker, S.,
Bitter, S. M.,
and Okada, M. D.
(1983)
J. Med. Chem.
26,
657-661
|
| 30.
|
Hemmerich, S.,
Paavola, C.,
Bloom, A.,
Bhakta, S.,
Freedman, R.,
Grunberger, D.,
Krstenansky, J.,
Lee, S.,
McCarley, D.,
Mulkins, M.,
Wong, B.,
Pease, J.,
Mizoue, L.,
Mirzadegan, T.,
Polsky, I.,
Thompson, K.,
Handel, T. M.,
and Jarnagin, K.
(1999)
Biochemistry
38,
13013-13025
|
| 31.
|
Jarnagin, K.,
Bhakta, S.,
Zuppan, P.,
Yee, C.,
Ho, T.,
Phan, T.,
Tahilramani, R.,
Pease, J. H. B.,
Miller, A.,
and Freedman, R.
(1996)
J. Biol. Chem.
271,
28277-28286
|
| 32.
|
Jarnagin, K.,
Grunberger, D.,
Mulkins, M.,
Wong, B.,
Hemmerich, S.,
Paavola, C.,
Bloom, A.,
Bhakta, S.,
Diehl, F.,
Freedman, R.,
McCarley, D.,
Polsky, I.,
Ping-Tsou, A.,
Kosaka, A.,
and Handel, T. M.
(1999)
Biochemistry
38,
16167-16177
|
| 33.
|
Monteclaro, F. S.,
and Charo, I. F.
(1997)
J. Biol. Chem.
272,
23186-23190
|
| 34.
|
Schertler, G. F.,
Villa, C.,
and Henderson, R.
(1993)
Nature
362,
770-772
|
| 35.
|
Mirzadegan, T.,
Humblet, C.,
Ripka, W. C.,
Colmenares, L. U.,
and Liu, R. S.
(1992)
Photochem. Photobiol.
56,
883-893
|
| 36.
|
Probst, W. C.,
Snyder, L. A.,
Schuster, D. I.,
Brosius, J.,
and Sealfon, S. C.
(1992)
DNA Cell Biol.
11,
1-20
|
| 37.
|
Horn, F.,
Weare, J.,
Beukers, M. W.,
Horsch, S.,
Bairoch, A.,
Chen, W.,
Edvardsen, O.,
Campagne, F.,
and Vriend, G.
(1998)
Nucleic Acids Res.
26,
275-279
|
| 38.
|
Monteclaro, F. S.,
and Charo, I. F.
(1996)
J. Biol. Chem.
271,
19084-19092
|
| 39.
|
Somers, W.,
Ultsch, M.,
De Vos, A. M.,
and Kossiakoff, A. A.
(1994)
Nature
372,
478-481
|
| 40.
|
Bhat, T. N.,
Bentley, G. A.,
Fischmann, T. O.,
Boulot, G.,
and Poljak, R. J.
(1990)
Nature
347,
483-485
|
| 41.
|
Ng, H. P.,
May, K.,
Bauman, J. G.,
Ghannam, A.,
Islam, I.,
Liang, M.,
Horuk, R.,
Hesselgesser, J.,
Snider, R. M.,
Perez, H. D.,
and Morrissey, M. M.
(1999)
J.Med. Chem.
42,
4680-4694
|
| 42.
|
Hesselgesser, J.,
Ng, H. P.,
Liang, M.,
Zheng, W.,
May, K.,
Bauman, J. G.,
Monahan, S.,
Islam, I.,
Wei, G. P.,
Ghannam, A.,
Taub, D. D.,
Rosser, M.,
Snider, R. M.,
Morrissey, M. M.,
Perez, H. D.,
and Horuk, R.
(1998)
J. Biol. Chem.
273,
15687-15692
|
| 43.
|
White, J. R.,
Lee, J. M.,
Young, P. R.,
Hertzberg, R. P.,
Jurewicz, A. J.,
Chaikin, M. A.,
Widdowson, K.,
Foley, J. J.,
Martin, L. D.,
Griswold, D. E.,
and Sarau, H. M.
(1998)
J. Biol. Chem.
273,
10095-10098
|
| 44.
|
von Zastrow, M.,
Link, R.,
Daunt, D.,
Barsh, G.,
and Kobilka, B.
(1993)
J. Biol. Chem.
268,
763-766
|
| 45.
|
Suryanarayana, S.,
von Zastrow, M.,
and Kobilka, B. K.
(1992)
J. Biol. Chem.
267,
21991-21994
|
| 46.
|
Sung, C. H.,
Makino, C.,
Baylor, D.,
and Nathans, J.
(1994)
J. Neurosci.
14,
5818-5833
|
| 47.
|
Sung, C. H.,
Davenport, C. M.,
and Nathans, J.
(1993)
J. Biol. Chem.
268,
26645-26649
|
| 48.
|
Wong, L. M.,
Myers, S. J.,
Tsou, C. L.,
Gosling, J.,
Arai, H.,
and Charo, I. F.
(1997)
J. Biol. Chem.
272,
1038-1045
|
| 49.
|
Hibert, M. F.,
Trumpp-Kallmeyer, S.,
Bruinvels, A.,
and Hoflack, J.
(1991)
Mol. Pharmacol.
40,
8-15
|
| 50.
|
Strader, C. D.,
Fong, T. M.,
Graziano, M. P.,
and Tota, M. R.
(1995)
FASEB J.
9,
745-754
|
| 51.
|
Strader, C. D.,
Fong, T. M.,
Tota, M. R.,
Underwood, D.,
and Dixon, R. A.
(1994)
Annu. Rev. Biochem.
63,
101-132
|
| 52.
|
Henderson, R.,
Baldein, J. M.,
Ceska, T. A.,
Zemlin, F.,
Beckman, E.,
and Downing, K. H.
(1990)
J. Mol. Biol.
213,
899-929
|
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