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J. Biol. Chem., Vol. 275, Issue 36, 27689-27693, September 8, 2000
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From the
Received for publication, June 20, 2000, and in revised form, June 27, 2000
Aggregation of proteins is a problem with serious
medical implications and economic importance. To develop strategies for preventing aggregation, the mechanism(s) and pathways by which proteins
aggregate must be characterized. In this study, the thermally induced
aggregation processes of three Protein folding is arguably the most important process studied in
biophysics and structural biology because it converts linear polypeptide chains into three-dimensional structures that endow proteins with all their vital activities (1-3). Studies of protein folding are often plagued competing, off-pathway aggregation processes. Aggregation of proteins is also a problem with serious medical implications, e.g. in human disease states like Alzheimer's
disease (4), Parkinson's disease (5, 6), and monoclonal immunoglobulin amyloidosis (7, 8). Furthermore, protein aggregation during production,
shipping, storage, and delivery of therapeutic proteins is a problem of
significant economic importance (9-11). To develop strategies for
preventing protein aggregation, the mechanism(s) and pathways by which
proteins aggregate must be characterized. Such characterization is
complicated because light scattering interferes with many of the
optical techniques that are now standard for examining protein folding
pathways, e.g. fluorescence and circular dichroism spectroscopies.
In contrast, infrared (IR)1
spectroscopy is insensitive to light scattering and thus provides a
valuable method for studying protein aggregation. IR spectroscopy can
be used to study not only the secondary structure of proteins in the
soluble, native state (12-15) but also in precipitated states, both
native (e.g. salted out) and denatured (e.g.
thermally, chemically, or mechanically induced aggregates) (16-20).
However, a shortcoming of IR spectroscopy is that relatively high
protein concentrations (e.g. 20 mg/ml in H2O)
are needed to obtain high quality spectra. With such high concentrations of protein, perturbations used to induce structural transitions leading to aggregation (e.g. high temperature)
cause a rapid conversion of native protein to insoluble aggregates that are rich in intermolecular To address this issue, in the current study we combined thermal and
chemical approaches to allow population of aggregation pathway
intermediates. With this approach, the model protein pool for the
unfolding studies may be expanded to include proteins with a wide range
of secondary structural compositions and various degree of resistance
to chemical denaturants. Here, we present the results of studies in
which we compared unfolding and aggregation of three Protein Sources and Preparations--
Cytochrome c
(type VI, horse heart), myoglobin (horse heart), and lysozyme (chicken
egg white) were purchased from Sigma and used without further
purification. Guanidine hydrochloride was SigmaUltra grade from Sigma.
The stock solutions of proteins were prepared by dissolving lyophilized
protein powder in 50 mM potassium phosphate (pH 7.2) at
concentration of 40 mg/ml and followed by filtration with a 0.20-µm
syringe filter. The stock solution of GdnHCl was prepared in 50 mM potassium phosphate at concentration of 2.0 M, and pH was adjusted with KOH solution. GdnHCl
concentration was determined using a refractometer and following
equation (26).
Infrared Spectroscopy--
IR spectra were measured with a Bomem
IR spectrometer equipped with a dTGS detector. Protein samples were
placed in a P/N 20500 heatable cell with CaF2 windows and a
6-µm spacer. For each spectrum, a 128-scan interferogram was
collected in single beam mode with a 4 cm Thermally Induced Structural Transitions--
Fig.
1 shows the infrared absorbance spectra
of myoglobin, cytochrome c, and lysozyme in 50 mM potassium phosphate buffer (pH 7.2) as a function of
temperature. The two strong bands centered near the 1656 and 1548 cm
Fig. 2 shows the second derivative amide
I spectra of the three proteins in the absence of GdnHCl. Assignments
of the amide I components can be made on the basis of previous infrared
studies of over 50 proteins in H2O-based solution (15,
27).2 The bands near
1656 cm
For lysozyme, bands indicative of intermolecular
An important feature of the IR spectra of all three thermally treated
proteins in the absence of GdnHCl is the isosbestic points at 1688, 1664, 1648, and 1639 cm Thermochemically Induced Structural Transitions--
To foster
structural transitions and permit detection of unfolding/aggregation
intermediate(s) during heating, we added a nondenaturing concentration
of chemical denaturant GdnHCl (1.0 M) into the protein
solution. In contrast to the aggregation induced by elevated
temperature alone, the amide I absorbance maxima of the three proteins
in the presence of 1.0 M GdnHCl shift to a higher wave
number as a function of temperature (data not shown). Fig.
3 shows the second derivative spectra of
the three proteins in the amide I region as a function of temperature
in the presence of 1.0 M GdnHCl. Comparison of the spectra
recorded at 25 °C with (Fig. 3) or without GdnHCl (Fig. 2) reveals
that the presence of a nondenaturing concentration of GdnHCl does not
alter the native structures of myoglobin and cytochrome c
and causes only a small loss of native
Fig. 4 shows a plot of the frequency of
the most prominent amide I component as a function of temperature. It
clearly shows that, within the temperature range of the experiment, the
major secondary structural components of the thermally perturbed state are represented by the bands near 1667 cm
Fig. 5 shows the overlay of second
derivative spectra of the three proteins in the presence of 1.0 M GdnHCl at 25 and 75 °C and after cooling from 75 to
25 °C. The result shows that the reversibility of the thermally
induced transition depends on the conformation of the thermally
perturbed state. Myoglobin structure at 75 °C contains
intermolecular
Fig. 6 shows a plot of the relative
intensity of the The thermally induced aggregation processes of the majority of the
proteins studied by Fourier transform IR spectroscopy can be described
with a two-state model. The predominant secondary structural element
( Lysozyme in the absence of GdnHCl also shows isosbestic evidence of a
two-state transition (Figs. 1 and 2). The amount of It is noteworthy that the random (unordered) structure observed in the
thermally aggregated state of other proteins (16-18, 22, 39) is not a
major element in the thermally perturbed state of the three Addition of 1.0 M GdnHCl in conjunction with elevated
temperatures results in significant accumulation of non-native species rich in 310-helix and We have demonstrated in the present study that IR spectroscopic
investigations of protein aggregation using a combination of thermal
and chemical denaturing factors can provide a means to populate and
characterize aggregation intermediates. This method should be valuable
for studying the aggregation processes of a wide range of proteins. We
speculate that identification and characterization of aggregation
intermediates may lead to new interdiction strategies for amyloidogenic
human diseases, as well as to improvements in industrial processing,
storage, and delivery of therapeutic proteins.
*
This work was supported in part by National Institutes of
Health Grant 1R15GM5588901 (to A. D.).The costs of publication of this
article were defrayed in part by the
payment of page charges. The article
must therefore be hereby marked
"advertisement" in accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
§
To whom the correspondence should be addressed. Tel.: 970-351-1284;
Fax: 970-351-1269; E-mail: adong@unco.edu.
Published, JBC Papers in Press, June 27, 2000, DOI 10.1074/jbc.M005374200
2
A. Dong, J. F. Carpenter, and W. S. Caughey, unpublished observation.
The abbreviations used are:
IR, infrared;
GdnHCl, guanidine hydrochloride.
Entrapping Intermediates of Thermal Aggregation in
-Helical
Proteins with Low Concentration of Guanidine Hydrochloride*
§,
Department of Chemistry and Biochemistry,
University of Northern Colorado, Greeley, Colorado 80639, the
¶ Department of Chemical Engineering, University of Colorado,
Boulder, Colorado 80309, and the
Department of Pharmaceutical
Sciences, School of Pharmacy, University of Colorado Health Sciences
Center, Denver, Colorado 80262
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ABSTRACT
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES
-helix proteins (myoglobin, cytochrome c, and lysozyme) in the presence and absence of
1.0 M guanidine hydrochloride (GdnHCl) were investigated by
means of infrared spectroscopy. In the absence of GdnHCl, intensities of the
-helix bands (~1656 cm
1) decrease as a
function of temperature at above 50 °C. With myoglobin and
cytochrome c, the loss of helix bands was accompanied by
the appearance of two new bands at 1694 and 1623 cm
1,
indicative of the formation of intermolecular
-sheet aggregates. For
lysozyme, bands indicative of intermolecular
-sheet aggregates did
not appear in any significant intensity. In the presence of 1.0 M GdnHCl, two major intermediate states rich in
310-helix (represented by the band at 1663 cm
1) and
-turn structure (represented by the band at
1667 cm
1), respectively, were observed. These findings
demonstrated that IR spectroscopic studies of protein aggregation using
a combination of thermal and chemical denaturing factors could provide
a means to populate and characterize aggregation intermediates.
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INTRODUCTION
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES
-sheet (16-18, 21, 22). This conversion is so rapid with respect to typical IR spectral acquisition
(e.g. 5 min) that intermediates in the aggregation pathway
usually cannot be detected. Yet, current theoretical and experimental
mechanisms for protein aggregation suggest that aggregates are formed
from partially folded intermediates (23). Thus, what is needed to capitalize on the advantages of IR spectroscopy for the study of
protein aggregation is a means of populating these folding intermediates sufficiently for IR spectroscopic characterization.
-helix
predominant proteins (myoglobin, cytochrome c, and lysozyme)
in the presence or absence of 1.0 M GdnHCl using IR
spectroscopy. A 1.0 M GdnHCl concentration is chosen
because earlier studies have shown that at this concentration of GdnHCl and room temperature, both myoglobin and cytochrome c are
not unfolded (24, 25). Here we will show that elevation of the temperature above 25 °C allows partial unfolding to occur, whereas the presence of GdnHCl both lowers the temperature at which transitions occur and inhibits the conversion of these partially folded
intermediates to aggregates.
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MATERIALS AND METHODS
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ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES
where
(Eq. 1)
N is the difference between the refractive
index of a GdnHCl solution and that of water. Samples for infrared
analysis were prepared by mixing together the stock solutions of
protein and GdnHCl at 1:1 ratio and equilibrated for at least 30 min
before measurement. The final concentrations of the proteins were 20 mg/ml, and the GdnHCl was 1.0 M.
1 resolution.
Reference spectra were recorded under identical scan conditions with
only the buffer or 1.0 M GdnHCl buffer in the cell. The
chosen temperature at which a spectrum was acquired was controlled
within 0.5 °C using a custom built Peltier IR cell temperature
controller. Spectral acquisition at a given temperature required
approximately 6 min (i.e. dwell time at the given
temperature). The average heating rate between spectral acquisition
temperatures was 1.5 °C/min. Protein spectra were obtained according
to previously established criteria and double subtraction procedure
(15, 27). For the best result the spectra of buffer and 1.0 M GdnHCl buffer were subtracted from the spectrum of
protein separately. The second derivative spectra were obtained with a
7-point Savitsky-Golay derivative function and then base line corrected
as described previously (17).
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RESULTS
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ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES
1 are the so-called the amide I and II bands,
respectively. The amide I band arises primarily from the C=O stretching
vibration of the peptide linkages that constitute the backbone
structure of proteins and is known to be sensitive to the secondary
structural composition and conformational changes of proteins (12, 15, 28). The amide II band arises mainly from an out-of-phase combination of N-H in-plane bending and C-N stretching vibrations of peptide linkages (28) and is less useful in protein structural analysis. At
25 °C all three proteins exhibited the amide I band maximum near the
1656 cm
1, a frequency characteristic to proteins
containing predominantly
-helical structures (27). Elevation of
temperature to ~80 °C resulted similar spectral changes in all
three proteins. The amide I absorbance maximum near 1656 cm
1 decreased as a function of temperature, accompanied
by intensity increase at 1623 and 1694 cm
1. In addition,
a temperature-dependent intensity decrease and frequency red
shift at the amide II bands were observed for all three proteins. The
changes at the amide II region seem to be nonspecific to thermally
induced protein unfolding and aggregation, because similar changes were
also reported for the recombinant human factor XIII, a predominantly
-sheet protein (29).

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Fig. 1.
The original infrared spectra of myoglobin
(Mb), cytochrome c (Cyt
c), and lysozyme in 50 mM potassium phosphate,
pH 7.2, measured at temperatures range from 25 to 85 °C. The
spectra of aqueous and gaseous water were subtracted from the spectra
of proteins as described under "Methods and
Materials."
1 are assigned to
-helix structure. The bands
between 1670 and 1685 cm
1 are due to
-turn structure.
At 25 °C all three proteins exhibit a strong amide I band near 1656 cm
1. At temperatures between 35 and 50 °C, the
intensities of the 1656 cm
1 bands increases slightly from
that of the native state at 25 °C. As temperature increases to above
55 °C, the intensities of the 1656-cm
1 bands decrease
dramatically. For myoglobin and cytochrome c, there is a
concomitant appearance of two new bands at 1623 cm
1 (the
low wave number
-sheet component) and the 1694 cm
1
(the high wave number
-sheet component), indicative of
intermolecular
-sheet (see "Discussion") in protein aggregates
(17, 31, 32). The latter become a predominant spectral feature of
thermally aggregated states of myoglobin and cytochrome c.
When cooled from 80 to 25 °C, the two
-sheet aggregate bands
remain unchanged in their intensity but shifted ~2 cm
1
to a lower wave number (data not shown). In addition to the appearance of IR bands assigned to intermolecular
-sheet, the presence of aggregated protein in the samples was documented by the observation that the cooled samples formed gels, which are characteristic extensive
intermolecular interactions in protein samples.

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Fig. 2.
The second derivative amide I spectra of
myoglobin (Mb), cytochrome c
(Cyt c), and lysozyme in 50 mM
potassium phosphate, pH 7.2, recorded at 25, 35, 45, 55, 60, 65, 70, 75, and 80 °C. The arrows indicate the directions of
spectral changes as a function of temperature.
-sheet do not
appear in any significant intensity, even though the pronounced loss of
native
-helix is irreversible (data not shown). The lack of well
resolved bands suggest that the structure of thermally perturbed
lysozyme is comprised of a heterogeneous ensemble of proteins with
non-native
-turns, extended strands, and residual
-helix.
1. This observation suggests that
heat treatment of the three proteins results in a transition between
only two readily detectable states: the native and aggregated.
-helix (~5%) in lysozyme.
As the temperature increases, however, the proteins exhibit unfolding
patterns distinctly different from those noted in the absence of
GdnHCl. As intensities decrease, the maximum absorbance of predominant
amide I components shift from near 1656 cm
1 to 1663 cm
1 and eventually to near 1667 cm
1.
Intermolecular
-sheet bands (1623 and 1694 cm
1) in
myoglobin spectra appear at temperatures above 55 °C, and the band
at 1666 cm
1 becomes more intense. However, the
intermolecular
-sheet bands are less intense than those noted at the
same temperatures in the absence of GdnHCl. With cytochrome
c and lysozyme, even at elevated temperatures, no
intermolecular
-sheet bands appear.

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Fig. 3.
Second derivative amide I spectra of
myoglobin (Mb), cytochrome c
(Cyt c), and lysozyme in 1.0 M
GdnHCl, 50 mM potassium phosphate, pH 7.2, recorded at 25, 35, 45, 55, 60, 65, 70, and 75 °C. The arrows
indicate the directions of spectral changes as a function of
temperature.
1 for myoglobin
and lysozyme and the band at 1663 cm
1 for cytochrome
c. On the basis of theoretical (28) and infrared spectroscopic studies (15, 33), the band component at 1662 ± 3 cm
1 can be assigned to the 310-helix
structure, and the band near 1667 cm
1 can be assigned
to the
-turn structures (27). Differing from the
-helix in
that the hydrogen bond is of the 4
1 type rather than the 5
1 type, 310-helix is also less common in proteins than
-helix (34). Nevertheless, 310-helix structure has been found by x-ray crystallographic analysis, for example, in peptides containing
-aminoisobutyric acid residues (35, 36) and in globular
proteins such as
-lactalbumin (31%
-helix and 20%
310-helix) (37). By examining the IR spectra of synthetic
peptides containing
-aminoisobutyric acid residues, Kennedy and
colleagues (33) showed that the peptides have an amide I band maximum
between 1666 and 1662 cm
1. Prestrelski and co-workers
(38) reported that the deconvoluted spectrum of
-lactalbumin in
H2O solution exhibited a strong amide I band component near
1661 cm
1. Our spectral analysis of
-lactalbumin in
H2O agreed with the band assignment of 1662 ± 3 cm
1 to 310-helix (data not shown). Based on
this supporting evidence, we conclude that our current data document
that in the presence of 1.0 GdnHCl the conformations of the myoglobin,
cytochrome c, and lysozyme undergo major structural changes
from
-helices to 310-helices and then to a
-turn
structure as temperature increases.

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Fig. 4.
Frequency change at the major amide I
component as a function of temperature for the proteins in 1.0 M GdnHCl, 50 mM potassium phosphate.
Mb, myoglobin; Cyt c, cytochrome
c.
-sheet and upon cooling does not revert to the native
-helix conformation with or without 1.0 M GdnHCl.
Cytochrome c in 1.0 M GdnHCl at 75 °C
contains 310-helices, which revert to native
-helix upon
cooling. When lysozyme is heated to 75 °C in 1.0 M
GdnHCl, there is a conformational transition to a
-turn structure
that is partially reversible upon cooling.

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Fig. 5.
Comparison of the second derivative amide I
spectra of myoglobin (Mb), cytochrome c
(Cyt c), and lysozyme in 1.0 M
GdnHCl buffer measured at 25 and 75 °C and at 25 °C after being
cooled from 75 °C.
-helix bands of three proteins with and without
GdnHCl as a function of temperature. The intensities of
-helix bands
in the presence of GdnHCl were calculated at fixed frequency to
discount effects of frequency shift. The result shows that, for all
three proteins in the absence of GdnHCl, thermally induced loss of
-helix occurs at temperatures between 65 and 80 °C with a
midpoint around 72 °C. In the presence of GdnHCl, however, the
structural transition starts at much lower temperature for all three
proteins, especially for myoglobin. The midpoints of transition as
monitored by the intensity changes at the
-helix bands are about
65 °C for cytochrome c and lysozyme and about 40 °C
for myoglobin.

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Fig. 6.
Relative intensity changes at the amide I
component assigned to the
-helical structure
as a function of temperature in the absence and presence of 1.0 M GdnHCl buffer. Mb, myoglobin; Cyt
c, cytochrome c.
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DISCUSSION
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ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES
-helix or
-sheet) decreases as a function of temperature and is
concomitantly replaced by intermolecular
-sheet because of protein
aggregation (16-18, 22, 39). The latter is evident by the appearance
of a strong band near 1624 ± 8 cm
1 (low wave number
-sheet component) accompanied by a weak band near 1693 ± 5 cm
1 (high wave number
-sheet component).
Intermolecular
-sheet structure is a common secondary structural
element in the aggregated state of proteins (16-18, 22, 31, 32, 39).
The formation of intermolecular
-sheet structure in thermally
induced protein aggregates was clearly demonstrated by Clark and
colleagues (40) using small angle x-ray scattering. Later, they
reported a close relationship between the thermally induced
intermolecular
-sheet aggregates and appearance of a new, well
defined amide I band component near 1620 cm
1 (31). More
recently, Damaschun et al. (32) studied fibrils of
phosphoglycerate kinase with small angle x-ray scattering and provided
similar corroboration for assignment to the high and low wave number IR
bands noted above to intermolecular
-sheet. Our data for the
thermally induced structural transitions in myoglobin and cytochrome
c in the absence of GdnHCl suggest a direct transition from
the native conformation to intermolecular
-sheet aggregates, evidenced by the isosbestic points visible for both proteins (Figs. 1
and 2).
-sheet aggregate
present in the thermally perturbed state of lysozyme is negligible,
however, judging by the weak band near 1625 cm
1 (low wave
number
-sheet component). The major secondary structural elements in
the thermally perturbed state of lysozyme are represented by two broad
bands at 1657 and 1685 cm
1, assignable to the residual
-helix and
-turn structure, respectively (15).
-helix
proteins studied here. Unordered structure is generally associated with
an amide I component at 1645 ± 4 cm
1 for proteins
in D2O solution (12) and 1648 ± 2 cm
1
for proteins in H2O solution (15). The latter assignment is supported by the IR spectrum of the model compound
poly-L-lysine in H2O solution at neutral pH
(38), in which the polypeptide is known to be a random coil (41-43).
The lack of random coil as a major structural element in the thermally
aggregated state has also been reported for the
-sheet predominant
protein, recombinant human Factor XIII (29). We should point out that
the so-called loop structure, which may be classified as part of random
structure, could also contribute to the band intensity near 1658 cm
1 (14, 44, 45). Previous IR spectroscopic studies on
superoxide dismutase have also shown that the random/loop structure is
represented by a part of the 1658 cm
1 band (accounts for
of random/loop), in combination with a more prominent band
at 1647 cm
1 (accounts for
of random/loop)
(44). Furthermore, with existing IR spectroscopic data on a large
number of proteins in H2O solution,2 a protein
with a significant amount of random/loop structure that does not
exhibit a major band in the 1648 ± 2 cm
1 has not
been observed. The spectra of the thermally perturbed states of
proteins in the current study do not have a band in 1648 ± 2 cm
1 region of their IR spectra. Thus, the remaining bands
near 1656 cm
1 in their spectra are more likely associated
with the residual
-helix structure than with newly formed
unordered/loop structure.
-turn structures, which we suggest
are intermediates between the native protein and aggregated states for
myoglobin and cytochrome c. Similar structures are seen in lysozyme, although intermolecular
-sheet aggregates are not formed in the temperature range we tested. It is worth noting that similar spectral features have been previously observed in GdnHCl-induced unfolded state of iso-1-cytochrome c (46). Bowler and
co-workers (46) reported that as the concentration of GdnHCl increased, the intensity of the 1657 cm
1 band of iso-1-cytochrome
c because of
-helix structure was lost gradually and
replaced by three main features at 1687, 1666, and 1660 cm
1, ascribable to
-turn,
-turn, and
310-helix, respectively. Furthermore, Millhauser (47) has
proposed a thermodynamic folding pathway for helical peptide: random
coil
nascent helix
310-helix
-helix, after
examining the equilibrium of 310-helix/
-helix from the
perspective of crystallographic studies and spectroscopic data from
double label electron spin resonance, nuclear magnetic resonance, and
circular dichroism spectroscopies. In addition, molecular dynamics
simulations have suggested that 310-helices exist as
kinetic folding intermediates of analogous
-helical proteins (30,
48). Aggregation pathway intermediates containing 310-helix
and
-turn structures that we observe may also be the intermediates
on a folding pathway. For many proteins, it has been found that
aggregates are formed from intermediates on the folding pathway
(reviewed in Ref. 23).
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FOOTNOTES
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ABBREVIATIONS
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REFERENCES
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
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