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J. Biol. Chem., Vol. 275, Issue 39, 30280-30286, September 29, 2000
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,
§,
, and
From the
Department of Biochemistry and Molecular
Biology, Institute of Genetic Science, Yonsei University College of
Medicine, 134, Shinchon-dong, Seodaemun-gu, Seoul 120-752, South Korea
and the ¶ Department of Biochemistry, Kwandong University College
of Medicine, 522, Naekok-dong, Kangnung, Kangwon-do, 210-701, South
Korea
Received for publication, February 9, 2000, and in revised form, April 17, 2000
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ABSTRACT |
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ATP citrate-lyase (ACL) is a key enzyme supplying
acetyl-CoA for fatty acid and cholesterol synthesis. Its expression is
drastically up-regulated when an animal is fed a low fat, high
carbohydrate diet after prolonged fasting. In this report, we describe
the role of sterol regulatory element-binding proteins (SREBPs) in the
transactivation of the rat ACL promoter. ACL promoter activity was
markedly stimulated by the overexpression of SREBP-1a and, to a lesser
extent, by SREBP-2 in Alexander human hepatoma cells. The promoter
elements responsive to SREBPs were located within the 55-base pair
sequences from ATP citrate-lyase (ACL)1
is a cytosolic enzyme that catalyzes the cleavage of citrate into
oxaloacetate and acetyl-CoA (1). In liver and adipose tissue, this
enzyme plays an important role in supplying acetyl-CoA for both fatty
acid and cholesterol synthesis (2). As the specific inhibition of ACL
in rats significantly decreases the plasma levels of triacylglycerol
and cholesterol, ACL is expected to be a potential target for
hypolipidemic intervention (3, 4). The activity of ACL is mainly
regulated at the level of transcription by diet regimen and
insulin, like other lipogenic enzymes, such as fatty acid synthase and
acetyl-CoA carboxylase (5). The sequences of the 5' flanking region of
the ACL gene are highly conserved in humans and rats, whereas there is
no homology in the regions of the 5' untranslated region and the
first intron, suggesting that transcription is regulated in the same
manner in these two species (6, 7). Although ACL plays an important role in fatty acid and cholesterol biosynthesis and is highly controlled by diet at the transcription level, studies on the structure
and function of this promoter have been very limited thus far.
SREBPs are the transcription factors that regulate the
transcription of many genes involved in cholesterol and fatty acid synthesis, such as low density lipoprotein (LDL) receptor,
farnesyl-pyrophosphate synthase, squalene synthase,
hydroxymethylglutary-CoA reductase, hydroxymethylglutary-CoA
synthase, fatty acid synthase, and acetyl-CoA carboxylase (8-12).
Nascent SREBPs reside in the endoplasmic reticulum and the nuclear
envelope as precursor forms (13). The transcriptionally acitive
amino-terminal segments are released from the precursor SREBPs by a
sequential two-step cleavage process. Once cleaved, the amino-terminal
segment translocates into the nucleus where it binds to sterol
regulatory elements (SREs) in the promoters of target genes. Three
isoforms of SREBPs have been identified. SREBP-1a and -1c are derived
from a single gene, using different transcription start sites. SREBP-1c
is known as a weak activator because of its short acidic domain.
SREBP-2 is transcribed from a separate gene, and it shows about
50% sequence homology to SREBP-1 isoforms. The in vivo
roles of the SREBP isoforms have been characterized in transgenic mice
overexpressing active forms of each isoform (14-16). Those reports
have shown that SREBP-1 is associated more with the genes involved in
fatty acid synthesis, whereas SREBP-2 preferentially stimulates genes
involved in cholesterol synthesis. For example, transgenic mice that
overexpress the active forms of SREBP-1a and -1c showed more elevated
expression of the mRNAs of lipogenic enzymes such as fatty acid
synthase and acetyl-CoA carboxylase than those of the LDL
receptor and other cholesterogenic enzymes.
Recent reports have shown that SREBP-1 might be the potential
transactivator that mediates lipogenic enzyme gene regulation during
the fasting/refeeding cycle. Refeeding a high carbohydrate/low fat diet
following long-term fasting up-regulates the nuclear concentration of
mature SREBP-1 and its mRNA in adipose tissue and liver (17, 18).
Recently, insulin was reported to increase SREBP-1c mRNA in
streptozotocin-induced diabetic rat liver and isolated hepatocytes, and
SREBP-1c was suggested as possibly mediating insulin action upon
regulation of the genes involved in lipid and carbohydrate
metabolism (19, 20). However, the action of the SREBPs on the
promoters of lipogenic enzymes is confirmed in only a few genes,
which include fatty acid synthase, acetyl-CoA carboxylase, stearoyl-CoA
desaturase, and glycerol-3-phosphate acyltransferase (21-25). Thus,
studies on SREBP activation of other lipogenic genes including ACL may
add more data for the generalization of the hypothesis.
In this study, we demonstrate that SREBPs stimulate the ACL promoter
through their binding to an upstream promoter region and that the
activation requires NF-Y binding. We also show that SREBP-1a and -2 have different potencies in activating the ACL promoter derived from
their carboxyl-terminal domain and not from the amino-terminal
activation domain.
Cell Culture--
Alexander cells obtained from ATCC were
cultured in minimal essential medium supplemented with 10% fetal calf
serum, 100 unit/ml penicillin G-sodium, 100 µg/ml streptomycin
sulfate, and 0.25 µg/ml amphotericin B. All cell culture materials
were purchased from Life Technologies, Inc.
Construction of ACL Promoter-Luciferase Plasmids--
The rat
ACL promoter fragments spanning Transient Transfection Assay--
Alexander cells were plated at
a density of 2 × 105 cells/35-mm dish. On the
following day, transfection was performed with 0.4 µg of the
indicated ACL promoter-luciferase constructs, 0.2 µg of
pCMV- Preparation of Recombinant Human SREBPs and Nuclear
Extracts--
Recombinant human SREBPs were expressed in
Escherichia coli BL21(DE3)pLysS. SREBP expression vectors
pET-SREBP-1a and pET-SREBP-2 were generated by inserting the cDNA
fragments from pCSA10 and pCSA2, respectively, between the
EcoRI and SalI sites of pET-21a (Novagen).
The bacteria freshly transformed with each expression vector were grown
to mid-log phase, and proteins were induced for 4 h with 1 mM isopropyl- DNase I Footprinting--
The probes corresponding to
nucleotides Gel Mobility Shift Assay--
The probes corresponding to
nucleotides SREBPs Strongly Induced ACL Promoter Activity--
To
determine whether SREBPs are able to activate the rat ACL promoter and
to focus on the responsive regions, we prepared a series of plasmid
constructs containing the various lengths of the rat ACL promoter
linked to the luciferase gene. ACL promoter-reporter constructs and the
putative binding sites of transcription factors are shown in Fig.
1. The nucleotide sequence is numbered
based on the published sequence of the rat ACL gene (6).
Promoter-reporter constructs were transiently transfected into the
Alexander cells in the presence or absence of pCSA10 or pCS2 encoding
the mature form of human SREBP-1a or SREBP-2, respectively (Fig. 1).
The luciferase activity indicating ACL promoter activity was increased by the overexpression of SREBP-1a and SREBP-2. In most constructs tested, SREBP-1a showed higher activation than SREBP-2. The level of
promoter activities of pACL1860 and pACL419 were almost the same in
presence or absence of SREBPs. Nucleotide sequence analysis showed six
Sp1 binding sites and one NF-Y binding site in the region from SREBP Binding Regions Were Determined by DNase I Footprinting and
Gel Mobility Shift Assay--
To localize the SREBP-1a binding sites
in the region from
To confirm the SREBP binding to these two footprinted regions, gel
retardation assays were done. We prepared downstream (
When the
The upstream probe,
These gel retardation results show that NF-Y binds to the inverted
Y-box and that SREBP-1a binds to four regions, designated as regions A,
B, C, and the inverted Y-box (Figs. 3A and
4A).
DNA Binding Domains of SREBPs Determine Their Potencies on
Transactivating the ACL Promoter--
Although both SREBP-1a and
SREBP-2 have almost the same potencies to activate the transcription of
p5xSRE-tk, which contains five copies of LDLR-SRE1 at the upstream of
herpes simplex thymidine kinase promoter, SREBP-2 was a much less
effective activator than SREBP-1a for the ACL promoter (Fig.
5A). Among the several
possibilities that may explain the different potencies, we first
compared the binding affinities of SREBP-1a and -2 with the ACL
promoter SREs. Although SREBP-1a showed no difference in binding to the
LDLR-SRE1 and ACL SREs, SREBP-2 bound to the ACL SREs much less
efficiently than to the LDLR-SRE1 (Fig. 5B). Therefore, the
different affinities of SREBPs to multiple SREs in ACL promoter might
explain the differences in their transactivation activities. However,
it is still possible that the amino-terminal activation domains of
these factors might have different compatibilities to the ACL
promoter. To rule out this possibility, we constructed two kinds of
plasmids, p2A-1aD and p1aA-2D expressing chimeric SREBPs, of which the
sequences for the amino-terminal activation domain (amino acids 1-70)
were exchanged as illustrated in Fig. 5C. The p2A-1aD could
induce the ACL promoter as efficiently as pCSA10, whereas p1aA-2D
induced it to a lesser extent, similar to pCS2 (Fig. 5D).
This finding suggests that the potencies of SREBPs in transactivating
the ACL promoter depend on the carboxyl-terminal portion of SREBPs but not the amino-terminal activation domains and that the binding affinity
of SREBPs to the promoter elements is an important factor in
determining the potency of transactivation.
The Functional Roles of SREBP-binding Elements and the Inverted
Y-box--
To evaluate the functional significance of the SREBP
binding elements and the inverted Y-box in the ACL promoter, a
transient transfection experiment was performed. The mutant clones,
basically produced from pACL114, were transiently transfected into
Alexander cells, and their responsiveness to SREBP-1a was tested (Fig.
6). The constructs have mutations that
prevented the binding of SREBP-1a and/or NF-Y in the gel mobility shift
assays (Fig. 3, 4). Any single mutation did not completely abolish the
responsiveness of pACL114 to SREBPs. Mutation at conserved SRE1 in
region C (m2) and at nucleotides in region B immediately upstream of
the inverted Y-box (m5) significantly decreased activation by SREBPs
without changing the basal transcription activity. However, the m7
mutation did not affect the activation, even though it also prevented
the SREBP1a binding in gel mobility shift assay. As region A exists at
the vector-promoter junction in pACL114, we could not exclude the possibility that the neighboring vector sequences altered the
binding affinity to SREBP-1a and thereby made this site nonfunctional. The double mutations at regions B and C (m2+5) completely abolished the
responsiveness of the ACL promoter to SREBP-1a without a decrease in
basal activity. The mutation at the inverted Y-box (m4) significantly decreased the basal promoter activity as well as the responsiveness to
SREBP-1a. The double mutations at region C and the inverted Y-box
(m2+4) decreased the basal promoter activity to a level similar to that
of m4 and decreased stimulation of the ACL promoter by SREBP-1a. The
mutations at the most proximal Sp1 binding site (mSp1) did not affect
the responsiveness of SREBP-1a. Because both SREBP1a and NF-Y can bind
to the inverted Y-box of the ACL promoter, we needed to determine which
was the responsible factor for the decrease of responsiveness to
SREBP-1a shown in the constructs containing the mutations at the
inverted Y-box (m4). By using the dominant negative mutant of NF-Y,
pmYA, which encodes the mutated A subunit of NF-Y lacking an ability to
bind to NF-Y consensus sequence (26), we could exclude the NF-Y binding
effect. When pmYA was added, the stimulation of the ACL promoter
activity by SREBP-1a and -2 was effectively suppressed almost to the
basal level (Fig. 7A).
However, SREBP-1a-induced activation of p5xSRE-tk was not changed by
adding pmYA. We could obtain the same result when the construct
containing mutations at the inverted Y-box (m4) was used (data not
shown). These results suggested that NF-Y binding to the inverted Y-box
is required for the effective transactivation of the ACL promoter by
SREBPs.
SREBPs are known as a family of transcription factors that
regulate the genes involved in fatty acid and cholesterol synthesis. It
has been suggested that SREBP-1 and SREBP-2 have different effects on
target genes, that is, SREBP-1 preferentially activates genes involved
in fatty acid synthesis and SREBP-2 activates genes involved in
cholesterol synthesis. Recent reports have suggested that SREBPs
stimulates the expression of ACL gene and that SREBP-1a would be a more
specific factor. Shimomura et al. (30) reported that the
level of mRNA for ACL was elevated by 3- to 4-fold in transgenic
mice overexpressing the mature form of SREBP-1a or -1c and by 1.5-fold
in transgenic mice overexpressing SREBP-2. In this study, we
demonstrate that the rat ACL promoter is highly activated by the direct
interaction of SREBPs with multiple SREs on the ACL promoter, and that
SREBP-1a is more effective activator than SREBP-2. In addition, we show
that the binding affinities of these SREBPs to ACL SREs determine their
potency in this promoter, supporting previous reports that SREBPs have
preferential target genes.
In the ACL promoter, the region between nucleotides The importance of the Sp1 binding sites for the action of SREBPs has
been reported in many promoters, such as LDL receptor (31), acetyl-CoA
carboxylase (22), and fatty acid synthase promoter (32). But in the
case of ACL, although the deletion of five upstream Sp1 binding sites
decreased the basal activity of the ACL promoter, it did not alter the
effect of SREBPs activating the ACL promoter (Fig. 1). Also, the
mutation of the most proximal Sp1 binding site downstream of region C
did not affect the activation by SREBPs (Fig. 6). On the other hand,
the responsiveness to SREBPs was markedly reduced when the binding of
NF-Y was disturbed by the mutation at the inverted Y-box or by
the overexpression of the dominant negative form of NF-YA (Figs. 6 and
7). These results indicate that the regulation of the ACL promoter by
SREBPs requires the neighboring binding of NF-Y, as was observed in
farnesyl-pyrophosphate synthase, squalene synthase,
hydroxymethylglutary-CoA synthase, glycerol-3-phosphate
acyltransferase, and SREBP-2 genes (9, 10, 12, 25,
33).
The ACL promoter activation by SREBP-1a and
114 to
60. The gel mobility shift assay revealed
four SREBP-1a binding sites in this region. Of these four elements, the
102/
94 region, immediately upstream of the inverted Y-box, and the
70/
61 region, just adjacent to Sp1 binding site, played critical
roles in SREBPs-mediated stimulation. The mutation in the inverted
Y-box and the coexpression of dominant negative nuclear factor-Y (NF-Y)
significantly attenuated the transactivation by SREBP-1a, suggesting
that NF-Y binding is a prerequisite for SREBPs to activate the ACL
promoter. However, the multiple Sp1 binding sites did not affect the
transactivation of the ACL promoter by SREBPs. The binding affinity of
SREBP-1a to SREs of the ACL promoter also was much higher than that of SREBP-2. The transactivation potencies of the chimeric SREBPs, of which
the activation domains (70 amino acids of the amino terminus) were
derived from the different species of their carboxyl-terminal region,
were similar to those of SREBPs corresponding to their carboxyl
termini. Therefore, it is suggested that the carboxyl-terminal portions of SREBPs containing DNA binding domains are important in
determining their transactivation potencies to a certain promoter.
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INTRODUCTION
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES
![]()
MATERIALS AND METHODS
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES
1860 to +67,
419 to +67,
99 to
+67, and
60 to +67 were amplified by polymerase chain reaction (PCR)
using Pfu polymerase and respective primers based on the
sequences reported previously (6). The amplified fragments were
gel-purified with a Qiaquick gel extraction kit (Qiagen Inc.) and then
subcloned into the SmaI site of pGL3-basic plasmid (Promega,
Madison, WI). The ACL promoter-luciferase constructs were designated as
pACL1860, pACL419, pACL99 and pACL60, respectively. Plasmid pACL114
construct was generated by the deletion of the SacI fragment
of
419 to
115 from pACL419. Mutant constructs were generated from
pACL114 and pACL419 with the mutagenic oligonucleotides (20 mer) using
the QuikChangeTM site-directed mutagenesis kit
(Stratagene). The mutated sequences are shown in Figs. 3 and 4. The
sequences of all the constructs were confirmed using the T7 sequencing
kit (Amersham Pharmacia Biotech). The construct of p5xSRE-tk was
generated by inserting 5 copies of LDLR SRE1 sequence I into
SacI site and herpes simplex thymidine kinase promoter into
SmaI and XhoI sites of pGL3-basic plasmid. All
transfection plasmids were prepared with the Qiagen Plasmid Midi Kit
(Qiagen Inc.).
-galactosidase plasmid (CLONTECH), and the
indicated amounts of pcDNA3 (Invitrogen) or SREBP expression
plasmids pCSA10 or pCS2. Plasmid pCSA10, which encodes amino acids
1-490 of SREBP-1a, and pCS2, which encodes amino acids 1-485 of
SREBP-2, were provided by Dr. T. Osborne (University of California,
Irvine). The chimeric SREBPs constructs (Fig. 5) were generated as
follows: the BglII restriction site was introduced into
pCSA10 and pCS2 at the 70th codon of SREBPs cDNA, and the
EcoRI-BglII fragments (220 base pairs) corresponding to
activation domains were exchanged between pCSA10 and pCS2. Plasmid pmYA
(
4YA13 m29), which encodes the dominant negative form of the A
subunit of NF-Y, was also used in the indicated transfection
experiment; it was provided by Dr. R. Mantovani (University of Milan,
Italy) (26). Transfection was performed using FuGENE6 transfection
reagent (Roche Molecular Biochemicals) for 6 h according to
the manufacturer's instructions. After 2 days, cells were washed with
phosphate-buffered saline (Life Technologies, Inc.) and lysed in 200 µl of reporter lysis buffer (Promega). Luciferase activities were
measured using the Luciferase Assay System (Promega) and normalized
with
-galactosidase activities (27) to correct the transfection
efficiency. Relative luciferase activity is expressed as the normalized
luciferase activity per microgram of protein.
-D-thiogalactopyranoside. The
bacteria were harvested by centrifugation and disrupted by sonication. The recombinant proteins containing amino-terminal T7 and
carboxyl-terminal polyhistidine (His6) tag were purified to
homogeneity by Ni-NTA-agarose (Qiagen) chromatography. The purity and
concentration of the recombinant proteins were verified by
SDS-polyacrylamide gel electorphoresis followed by Coomassie Brilliant
Blue staining. Nuclear extracts were prepared from the livers of Harlan
Sprague-Dawley rats (weighing about 200 g) according to the
procedures described previously by Gorski et al. (28).
142 to +67 of the ACL promoter were generated by PCR
using pACL419 as a template. 32P-labeled sense
oligonucleotides (nucleotides
142 to
116) and unlabeled antisense
oligonucleotides (+36 to +67) were used to label the sense strand,
whereas 32P-labeled antisense oligonucleotides (
20 to +5)
and unlabeled sense oligonucleotides (
142 to
116) were used as
primers to label the antisense strand. The PAGE-purified probes (50,000 cpm) were incubated with 0, 1, 2, and 4 µg of purified SREBP-1a for 20 min on ice in 50 µl of reaction buffer containing 10 mM HEPES, pH 7.9, 60 mM KCl, 1 mM
EDTA, 5 mM dithiothreitol, 7% glycerol, and 1 µg of
poly(dI-dC). Then, DNase I (Roche Molecular Biochemicals) diluted in 50 µl of 10 mM MgCl2, 5 mM
CaCl2 was added to the DNA-protein binding reactions. After
a 2-min incubation at room temperature, the digestion reactions were
stopped by adding 100 µl of stop buffer containing 1% (w/v) SDS, 200 mM NaCl, 20 mM EDTA, pH 8.0, and 0.1 µg/µl
glycogen. The DNA was extracted with phenol/chloroform and recovered by
ethanol precipitation. The pellets were dissolved in loading buffer and
then resolved on denaturing 6% polyacrylamide gel. The footprints were
compared with the G+A ladder produced by the chemical cleavage
sequencing reaction of the same probe to determine the corresponding
nucleotide sequences.
99 to
41 and
142 to
80 of the ACL promoter were
generated by PCR using 32P-labeled primers (20 mer) and
pACL419 plasmid as a template. To generate mutant probes, corresponding
mutant pACL419 plasmids were used as templates. The PAGE-purified
probes (20,000 cpm) were incubated with purified recombinant SREBPs (1 µg) or liver nuclear extract (7.5 µg) in a final volume of 20 µl
containing 10 mM HEPES, pH 7.9, 75 mM KCl, 1 mM EDTA, 5 mM dithiothreitol, 5 mM
MgCl2, 10% glycerol, 1 µg of poly(dI-dC), and 0.5% BSA.
After a 20 min incubation at room temperature, samples were resolved on
a 4% polyacrylamide gel in 1× TBE (45 mM Tris, 45 mM boric acid, 1 mM EDTA) at 200 V for
approximately 1 h at 4 °C. For the competition assays,
unlabeled oligonucleotides indicated in the figures were added to the
reactions at an approximately 100-fold molar excess. For the NF-Y
supershift assay, the antibody against the B subunit of NF-Y (0.2 µg), provided by Dr. R. Mantovani, was added to the reactions. The
sequences (coding strands) of the oligonucletides used in the
competition assays are as follows: NF-Y,
5'-GGGGTAGGAACCAATGAAATGAAAGGT-3' (29); LDL receptor-SRE1, 5'-TTTGAAAATCACCCCACTGCAAAC-3' (9); ACL
142/
116,
5'-AGCAGCGAATGGGGAGGAGCCTAGAGC-3'; ACL
102/
73,
5'-GCGTGTGCCCAATCGCCAGGCTGCATGGCC-3'; ACL
67/
41, 5'-GCTGATGGGGGGCGGGGAGGAGCCCG-3'.
![]()
RESULTS
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES
419 to
+67 (6). Deletion of five Sp1 binding sites (pACL114) markedly
decreased the basal transcription to 16% relative to that of pACL419.
However, the luciferase activity of pACL114 could be highly induced to
the level of 98% and 58% of the induced activity of pACL419 by
SREBP-1a and
2, respectively. Further deletion to nucleotide
100 (pACL99) reduced the enhancement by SREBP-1a and -2 to the level
of 43 and 70%, respectively, of the induced activity of
pACL114. Deletion to
61 (pACL60) abolished the basal
transcription activity and the transactivation of SREBPs. The
constructs pACL114
(
99/
80) and pACL114
(
79/
60), which were
generated from pACL114 by deleting the region from
99 to
80 and
from
79 to
60, respectively, significantly decreased the induction
by SREBPs. These results demonstrated that the SREs responsible for the
induction of ACL promoter activity by SREBPs exist in the region from
114 to
60.

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Fig. 1.
Transcriptional activation of the ACL
promoter by the overexpression of SREBPs. The ACL
promoter-luciferase constructs used in the experiments are shown on the
left side of the graph. The putative binding
sites for Sp1 and NF-Y are indicated by ovals and
square, respectively. Triplicate dishes of Alexander
cells were transfected with 0.4 µg of the indicated ACL
promoter-luciferase plasmids and 0.2 µg of pCMV-
-galactosidase
plasmid to normalize the transfection efficiency. In addition, SREBP
expression plasmids pCSA10 (gray bars), pCS2 (black
bars) or negative control pcDNA3 (white
bars) were also added to 0.4 µg using FuGENE6 reagent.
After a 2-day incubation in medium supplemented with 10% fetal calf
serum, luciferase activities and
-galactosidase activities were
measured. The values indicate normalized luciferase activity/µg of
protein in the cell extracts and represent the mean ± S.E.
obtained from three independent experiments.
114 to
60 of the ACL promoter, DNase I
footprinting was performed using purified recombinant human SREBP-1a
expressed in E. coli (Fig. 2).
SREBP-1a protected two regions, from
72 to
57 and from
88 to
113, adjacent to the inverted Y-box. The inverse sequence of
71 to
62 (GTGAGCTGAT/ATCAGCTCAC) has 80% homology to SRE1 (ATCACCCCAC)
identified in the promoter of LDL receptor (8). The sequence from
116
to
107 (CTCAGGCTAG) has 90% homology to SRE3 (CTCAGCCTAG) of
glycerol-3-phosphate acyltransferase promoter (25).

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Fig. 2.
Determination of the SREBP-1a binding sites
in the ACL promoter by DNase I footprinting. The 209-bp DNA
fragments of the ACL promoter (nucleotides
142 to +67) were
32P-labeled at the end of the sense or antisense strand and
then PAGE-purified. The radiolabeled probes and the purified human
recombinant SREBP-1a expressed in E. coli were used for the
reaction. The preparation of recombinant protein and DNase I
footprinting assay was performed as described under "Materials and
Methods." DNase I-treated reaction mixtures were subjected to
electrophoresis on denaturing 6% polyacrylamide gel. The same
radiolabeled probes were also subjected to chemical cleavage sequencing
reactions (G + A). The reaction products in the lanes are as
follows: lanes 1 and 7, G + A reaction; lanes 2 and 6, reactions without protein; lanes 3-5,
reactions with 1, 2, and 4 µg of SREBP-1a, respectively. The
protected regions (boxes) and their relative positions in
the ACL promoter are indicated.
99/
41) and
upstream probes (
142/
80) covering the protected regions (Figs.
3A and 4A).
SREBP-1a produced two shifted bands with
99/
41 probe (Fig.
3B), of which the upper band was the complex containing two
molecules of SREBP-1a. When the LDLR-SRE1 sequence was added to the
reaction as a competitor, both shifted bands disappeared completely.
Although competitor
102/
73, containing inverted Y-box, slightly
decreased the complex formation, neither the conserved NF-Y binding
sequence reported nor the Sp1-binding sequence, which exists in the ACL
promoter (
67/
41), competed complex formation. To determine the
precise binding sites for SREBP-1a, we introduced mutations in the
probes (Fig. 3A). The substitutions of three base pairs in
the conserved SRE1 region of
99/
41 probe produced the mutant
oligonucleotides m1 and m2, which formed complexes with the SREBP-1a at
significantly lower but still detectable levels (Fig. 3C).
The mutation of the inverted Y-box (CCAAT) to CGTTT (m4) slightly
decreased the formation of the complex and prevented the formation of
complex containing two molecules of SREBP-1a (Fig. 3C). The
mutations in both conserved SRE1 and inverted Y-box (m2+4) completely
inhibited binding of SREBP-1a to the probe (Fig. 3C).
Because all probes were generated by PCR using the same
32P-labeled antisense primer (
60/
41) and then
PAGE-purified, the differences in intensity between shifted bands were
not caused by the differences in the specific activities between wild
type and mutant probes. These results suggest that SREBP-1a binds not only to the conserved SRE1 sequence but also weakly to the inverted Y-box in the ACL promoter.

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Fig. 3.
SREBPs and NF-Y bind to the proximal region
of the ACL promoter. The sequences of wild type and mutant probes
(nucleotides
99 to
41) utilized for the gel retardation assay are
shown in A. The inverted Y-box (Inv. Y-box),
SRE1, and Sp1 binding sites are underlined. The mutated
sequences are presented on the top of the strand at the
respective positions. Mutants are named m1 to m4
and mSp1. Gel mobility shift assays and competition assays
shown in B were performed with the 32P-labeled
wild type probe and recombinant SREBP-1a (1 µg). Unlabeled
oligonucleotides LDLR-SRE1,
102/
73 of the ACL promoter, the
conserved NF-Y-binding sequence, and
67/
41 of the ACL promoter were
added as competitors at 100-fold molar excess where indicated. The
shifted DNA-protein complexes are indicated. C shows the gel
mobility shift assays using wild type probe (wt, lanes
1 and 5) or indicated mutant probes (lanes
2-4 and 6-8) and recombinant SREBP-1a. D
shows the gel mobility shift assays and supershift assays for NF-Y
binding. The wild type probe (WT) and the nuclear extracts
(7.5 µg) prepared from rat liver were incubated in the absence or the
presence of recombinant SREBP-1a (lanes 1 and 3).
Anti-NF-YB (0.2 µg) was added where indicated (lanes 2 and
4). The shifted bands produced by DNA-protein complexes are
indicated. The same assays were done with the inverted Y-box mutant m4
(lanes 5-8).
99/
41 probe was incubated with nuclear extracts isolated
from rat liver, one major shifted band was present (Fig. 3D,
lane 1). This band disappeared when anti-NF-YB antibody was added to the reaction (Fig. 3D, lane 2),
suggesting that this band was produced by the binding of NF-Y. The NF-Y
band was not present if the mutated inverted Y-box (m4) was used as a
probe (Fig. 3D, lanes 5-8). When SREBP-1a was
added to the reaction, an additional shifted band with lower mobility,
which was not clearly separated from the complex containing two
molecules of SREBP-1a, was produced as well as the bands formed by NF-Y
or SREBP-1a alone (Fig. 3D, lane 3). This
additional band is produced presumably by the binding of both NF-Y and
SREBP-1a, because this complex was supershifted by the anti-NF-YB
antibody (Fig. 3D, lane 4), and the addition of
SREBP-1a diminished the complex formed by NF-Y alone.
142
80 (Fig.
4A), also produced the three
shifted bands with SREBP-1a (Fig. 4B). The binding of
SREBP-1a was completely competed by the conserved SRE1 sequence of the LDL receptor promoter but was not competed by the conserved Y-box (29)
or the oligonucleotide (
142/
116) that contained the Sp1 binding.
The unlabeled oligonucleotide (
102/
73), containing the inverted
Y-box, slightly decreased the complex formation in a manner similar to
that observed in the experiment with the
99/
41 probe (Fig.
4B, lane 4). To determine the SREBP-1 binding
sites, a gel mobility shift assay was performed with mutant probes
generated by PCR using the same 32P-labeled sense primer
(
142/
123). SREBP-1a binding to m5 and m7 mutants was slightly
decreased (Fig. 4C, lanes 2 and 4). Introducing a
double mutation (m5+7) nearly abolished the SREBP-1a binding (Fig.
4C, lane 5), and the shifted bands were
completely abolished by triple mutations (m4+5+7) (data not shown).
However, the mutation outside the potential protein binding sites (m6)
did not affect SREBP-1a binding. Mutant m5, which has mutations 3 base
pairs away from CCAAT, did not affect NF-Y binding (data not
shown).

View larger version (42K):
[in a new window]
Fig. 4.
SREBP-1a binds to the upstream region
containing the inverted Y-box of the ACL promoter. A
shows the sequence of upstream probe (
142 to
80) used in the gel
mobility shift assays. The Sp1 binding site, SRE3, and the inverted
Y-box (Inv. Y-box) are underlined. The mutated
sequences are shown on the top of the strand at the
respective positions and are designated as m4, m5, m6, and
m7. B shows the gel mobility shift assays
performed with 32P-labeled wild type probes and recombinant
SREBP-1a (1 µg). Unlabeled oligonucleotides LDLR-SRE1,
102/
73 of
the ACL promoter, the conserved NF-Y-binding sequence, and
67/
41 of
the ACL promoter were added as competitors at 100-fold molar excess
where indicated. C shows the gel mobility shift assays
performed with wild type probe (wt) or indicated mutant
probes and recombinant SREBP-1a.

View larger version (28K):
[in a new window]
Fig. 5.
Comparison of binding affinities between
SREBP-1a and SREBP-2 to the ACL promoter and activities of chimeric
SREBPs. The transient transfection assay shown in
A was done by introducing pACL114 or p5xSRE1-tk (0.5 µg) together with 40 ng of expression plasmid. The fold increase was
shown as the ratio of the luciferase activities in the presence of
expression plasmid to those in the absence of expression plasmid. The
gel mobility shift assay shown in B was done with
32P-labeled LDLR-SRE1, ACL promoter fragments
142/
80,
and
99/
41. The probes were incubated with the indicated amount of
purified human SREBP-1a or SREBP-2 protein. Two chimeric SREBP
expression plasmids, p2A-1aD and p1aA-2D, were generated by exchanging
the coding sequences for amino acids 1-70 between SREBP-1a and -2, as
illustrated in C. The ACL promoter-luciferase construct,
pACL114 (0.5 µg), was transfected together with 40 ng of the
expression plasmids. Two days after transfection, cells were harvested,
and the luciferase activities were measured (D). The results
were expressed as the normalized luciferase activity/µg of protein in
the cell extracts. Values represent the mean ± S.E. obtained from
three independent experiments performed in triplicate.

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[in a new window]
Fig. 6.
The mutations of binding sites of SREBP-1a
and NF-Y in the ACL promoter attenuate the SREBP-1a-driven
transactivation of the ACL promoter-luciferase construct. The wild
type and mutant pACL114 constructs were illustrated schematically on
the left side of the graph. The mutant sequences are shown
in Fig. 3 and 4. Triplicate dishes of Alexander cells were transfected
with 0.4 µg of pACL114 and 0.2 µg of pCMV-
-galactosidase
plasmid, together with 10 ng (gray bars) or 100 ng
(black bars) of pCSA10 or pcDNA3 (white
bars). The total amount of transfected plasmids was
adjusted to 0.8 µg by adding pcDNA3. Two days after transfection,
cells were harvested, and the luciferase activities were assayed.
Values represent the mean ± S.E. from three independent
experiments.

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[in a new window]
Fig. 7.
The stimulation of ACL promoter-luciferase
construct by SREBPs is dependent on NF-Y. The indicated amounts of
pCSA10 or pCS2 along with 0.4 µg of pACL114 and 0.2 µg of
pCMV-
-galactosidase plasmid were transfected into Alexander cells
(A). Plasmid pcDNA3 (0.4 µg) or pmYA29 (0.4 µg)
encoding a dominant negative form of NF-YA was cotransfected as
indicated. The plasmid p5xSRE-tk (0.4 µg) was transfected with 40 ng
of pCSA10 and 0.4 µg of pmYA as indicated (B). The plasmid
pUC9 was used to make the total amount of transfected DNA equal. Two
days after transfection, luciferase activities were measured.
Normalized luciferase activities expressed as the mean ± S.E.
from three independent experiments are shown.
![]()
DISCUSSION
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES
114 and
60 was
the major determinant for the activation by SREBPs. The recombinant
SREBP-1a strongly bound to three regions, A, B, and C, in the proximal
promoter of the ACL gene. The SRE in region C (GTGAGCTGA) bears
sequences homologous to SRE1, which has been found in many target genes
of SREBPs. As expected, mutations at region C significantly reduced the
responsiveness to SREBPs without decreasing basal activity of ACL
promoter. The SRE in region B, the upstream region of the inverted
Y-box, showed a novel sequence (5'-AACGCGTGTG-3';
104 to
95)
differing from known consensus SREs. The mutation at region B prevented
the binding of SREBP-1a (Fig. 4C) without changing NF-Y
binding (data not shown) and also decreased the stimulation of ACL
promoter by SREBP-1a (Fig. 6). Region A has sequences highly homologous
to SRE3, which was reported in glycerol 3-phosphate acyltransferase
promoter. However, mutations in region A (m7) did not alter the
responsiveness to SREBPs, even though SREBP-1a showed strong affinity
to this region and its binding was significantly reduced to the mutant
probe (m7). The fact that mutations at both SREs in region B and C
resulted in complete loss of responsiveness of the ACL promoter to
SREBP-1a suggested that these two SREs play important roles in
SREBP-mediated regulation.
2 were quite different.
The amino-terminal 60 amino acid region of SREBP-1a is known to be an
activation domain that interacts with multiprotein complex including
CREB-binding protein (34, 35). SREBP-1c, which is derived from the same
gene as SREBP-1a by using different transcription start site, is
known as a weak activator because of its short amino-terminal region
(36). However, the different potencies of SREBP-1a and -2 for the ACL
promoter activation were not originated from their differences in
activation domains. Instead, SREBP-2 showed much less affinity to SREs
in the ACL promoter than SREBP-1a, and the chimeric SREBP, which has
the SREBP-2 activation domain followed by remaining the
carboxyl-terminal region of SREBP-1a, could activate the ACL promoter
as efficiently as SREBP-1a itself. This finding implies that SREBPs can
activate preferential target genes through their different affinities
to SREs in the promoters. The mechanism by which SREBPs activate their
preferential target genes has not been studied thus far. Therefore, it
will be necessary to evaluate promoter selection by studying the
binding affinity of SREBP isoforms in other promoters too.
| |
ACKNOWLEDGEMENTS |
|---|
We appreciate Dr. T. Osborne for
providing pCSA10 and pCS2 and Dr. R. Mantovani for providing
4YA13
m29 and the antibody against B subunit of NF-Y.
| |
FOOTNOTES |
|---|
* This work was supported by Ministry of Health and Welfare (South Korea) Grant HMP-98-B-2-0011.The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
§ Recipient of a scholarship from the Brain Korea 21 Project for Medical Science, Ministry of Education, South Korea.
To whom correspondence should be addressed. Tel.:
82-2-361-5186; Fax: 82-2-312-5041; E-mail:
kyungsup59@yumc.yonsei.ac.kr.
Published, JBC Papers in Press, May 8, 2000, DOI 10.1074/jbc.M001066200
| |
ABBREVIATIONS |
|---|
The abbreviations used are: ACL, ATP citrate-lyase; SREBP, sterol regulatory element-binding protein; SRE, sterol regulatory element; LDL, low density lipoprotein; LDLR, LDL receptor; NF-Y, nuclear factor-Y; PCR, polymerase chain reaction; PAGE, polyacrylamide gel electrophoresis.
| |
REFERENCES |
|---|
|
|
|---|
| 1. | Kornacker, M. S., and Ball, E. G. (1965) Proc. Natl. Acad. Sci. U. S. A. 54, 899-904 |
| 2. | Gibson, D. M., Lyons, R. T., Scott, D. F., and Muto, Y. (1972) Adv. Enzyme Regul. 10, 187-204 |
| 3. | Gribble, A. D., Ife, R. J., Shaw, A., McNair, D., Novelli, C. E., Bakewell, S., Shah, V. P., Dolle, R. E., Groot, P. H., Pearce, N., Yates, J., Tew, D., Boyd, H., Ashman, S., Eggleston, D. S., Haltiwanger, R. C., and Okafo, G. (1998) J. Med. Chem. 41, 3582-3595 |
| 4. | Pearce, N. J., Yates, J. W., Berkhout, T. A., Hackson, B., Tew, D., Boyd, H., Camiller, P., Sweeney, P., Gribble, A. D., Shaw, A., and Groot, P. H. E. (1998) Biochem. J. 334, 113-119 |
| 5. | Kim, K. S., Park, S. W., and Kim, Y. S. (1992) Biochem. Bhiophys. Res. Comm. 189, 264-271 |
| 6. | Kim, K. S., Moon, Y. A., Park, S. W., and Kim, Y. S. (1994) Biochem. J. 302, 759-764 |
| 7. | Park, S. W., Moon, Y. A., Kim, K. S., Ahn, Y. H., and Kim, Y. S. (1997) Biochim. Biophys. Acta 1353, 236-240 |
| 8. | Wang, X., Briggs, M. R., Hua, X., Yokoyama, C., Goldstein, J. L., and Brown, M. S. (1993) J. Biol. Chem. 268, 14497-14504 |
| 9. | Ericsson, J., Jackson, S. M., and Edwards, P. A. (1996) J. Biol. Chem. 271, 24359-24364 |
| 10. | Guan, G., Dai, P. H., Osborne, T. F., Kim, J. B., and Shechter, I. (1997) J. Biol. Chem. 272, 10295-10302 |
| 11. | Vallett, S. M., Sanchez, H. B., Rosenfeld, J. M., and Osborne, T. F. (1996) J. Biol. Chem. 271, 12247-12253 |
| 12. | Dooley, K. A., Millinder, S., and Osborne, T. F. (1998) J. Biol. Chem. 273, 1349-1356 |
| 13. | Brown, M. S., and Goldstein, J. L. (1997) Cell 89, 331-340 |
| 14. | Shimano, H., Horton, J. D., Hammer, R. E., Shimomura, I., Brown, M. S., and Goldstein, J. L. (1996) J. Clin. Invest. 98, 1575-1584 |
| 15. | Shimano, H., Horton, J. D., Shimomura, I., Hammer, R. E., Brown, M. S., and Goldstein, J. L. (1997) J. Clin. Invest. 99, 846-854 |
| 16. | Horton, J. D., Shimomura, I., Brown, M. S., Hammer, R. E., Goldstein, J. L., and Shimano, H. (1998) J. Clin. Invest. 101, 2331-2339 |
| 17. | Kim, J. B., Sarraf, P., Wright, M., Yao, K. M., Mueller, E., Solanes, G., Lowell, B. B., and Spiegelman, B. M. (1998) J. Clin. Invest. 101, 1-9 |
| 18. | Horton, J. D., Bashmakov, Y., Shimomura, I., and Shimano, H. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, 5987-5992 |
| 19. | Foretz, M., Guichard, C., Ferre, P., and Foufelle, F. (1999) Proc. Natl. Acad. Sci. U. S. A. 96, 12737-12742 |
| 20. | Shimomura, I., Bashmakov, Y., Ikemoto, S., Horton, J. D., Brown, M. S., and Goldstein, J. L. (1999) Proc. Natl. Acad. Sci. U. S. A. 96, 13656-13661 |
| 21. | Magana, M. M., and Osborne, T. F. (1996) J. Biol. Chem. 271, 32689-32694 |
| 22. | Lopez, J. M., Bennett, M. K., Sanchez, H. B., Rosenfeld, J. M., and Osborne, T. F. (1996) Proc. Natl. Acad. Sci. U. S. A. 93, 1049-1053 |
| 23. | Tabor, D. E., Kim, J. B., Spiegelman, B. M., and Edward, P. A. (1998) J. Biol. Chem. 273, 22052-22058 |
| 24. | Tabor, D. E., Kim, J. B., Spiegelman, B. M., and Edward, P. A. (1999) J. Biol. Chem. 274, 20603-20610 |
| 25. | Ericsson, J., Jackson, S. M., Kim, J. B., and Spiegelman, B. M. (1997) J. Biol. Chem. 272, 7298-7305 |
| 26. | Mantovani, R., Li, X. Y., Pessara, U., Huisjduijnen, H., Benoist, C., and Mathis, D. (1994) J. Biol. Chem. 269, 20340-20346 |
| 27. | Hall, C. V., Jacob, P. E., Ringold, G. M., and Lee, F. (1983) J. Mol. Appl. Genet. 2, 101-109 |
| 28. | Gorski, K., Carneiro, M., and Schibler, U. (1986) Cell 47, 767-776 |
| 29. | Raymondjean, M., Cereghini, C., and Yaniv, M. (1988) Proc. Natl. Acad. Sci. U. S. A. 85, 757-761 |
| 30. | Shimomura, I., Shimano, H., Korn, B. S., Bashmakov, Y., and Horton, J. D. (1998) J. Biol. Chem. 273, 35299-35306 |
| 31. | Sanchez, H. B., Yieh, L., and Osborne, T. F (1995) J. Biol. Chem. 270, 1161-1169 |
| 32. | Bennett, M. K., Lopez, J. M., Sanchez, H. B., and Osborne, T. F. (1995) J. Biol. Chem. 270, 25578-25583 |
| 33. | Sato, R., Inoue, J., Kawabe, Y., Kodama, T., Takano, T., and Maeda, M. (1996) J. Biol. Chem. 271, 26461-26464 |
| 34. | Naar, A. M., Beaurang, P. A., Robinson, K. M., Oliner, J. D., Avizonis, D., Scheek, S., Zwicker, J., Kadonaga, J. T., and Tjian, R. (1998) Genes Dev. 12, 3020-3031 |
| 35. | Naar, A. M., Beaurang, P. A., Zhou, S., Abraham, S., Solomon, W., and Tjian, R. (1999) Nature 398, 828-832 |
| 36. | Shimomura, I., Shimano, H., Horton, J. D., Goldstein, J. L., and Brown, M. S. (1997) J. Clin. Invest. 99, 838-845 |
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