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Originally published In Press as doi:10.1074/jbc.M006346200 on August 22, 2000
J. Biol. Chem., Vol. 275, Issue 45, 35408-35412, November 10, 2000
Steady State Kinetic Model for the Binding of Substrates and
Allosteric Effectors to Escherichia coli
Phosphoribosyl-diphosphate Synthase*
Martin
Willemoës §,
Bjarne
Hove-Jensen¶, and
Sine
Larsen
From the Centre for Crystallographic Studies,
Department of Chemistry, University of Copenhagen,
Universitetsparken 5, DK-2100 Copenhagen, Denmark and the ¶ Center
for Enzyme Research, Institute of Molecular Biology, University of
Copenhagen, Sølvgade 83H, DK-1307 Copenhagen, Denmark
Received for publication, July 18, 2000, and in revised form, August 11, 2000
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ABSTRACT |
A steady state kinetic investigation of the
Pi activation of 5-phospho-D-ribosyl
-1-diphosphate synthase from Escherichia coli suggests
that Pi can bind randomly to the enzyme either before or
after an ordered addition of free Mg2+ and substrates.
Unsaturation with ribose 5-phosphate increased the apparent
cooperativity of Pi activation. At unsaturating
Pi concentrations partial substrate inhibition by ribose
5-phosphate was observed. Together these results suggest that
saturation of the enzyme with Pi directs the subsequent
ordered binding of Mg2+ and substrates via a fast pathway,
whereas saturation with ribose 5-phosphate leads to the binding of
Mg2+ and substrates via a slow pathway where Pi
binds to the enzyme last. The random mechanism for Pi
binding was further supported by studies with competitive inhibitors of
Mg2+, MgATP, and ribose 5-phosphate that all appeared
noncompetitive when varying Pi at either saturating or
unsaturating ribose 5-phosphate concentrations. Furthermore, none of
the inhibitors induced inhibition at increasing Pi
concentrations. Results from ADP inhibition of Pi
activation suggest that these effectors compete for binding to a common
regulatory site.
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INTRODUCTION |
The enzyme 5-phospho-D-ribosyl -1-diphosphate
(PRPP)1 synthase (EC 2.7.6.1)
catalyzes the reaction MgATP + Rib-5-P AMP + PRPP. PRPP is a
precursor of purine, pyrimidine and pyridine nucleotides and the amino
acids histidine and tryptophan (1-3). In addition, PRPP is a precursor
of methanopterin in Methanosarcina thermophila (4) and
polyprenylphosphate-pentoses in Mycobacteria (5). The PRPP synthase
reaction proceeds by attack of the 1-hydroxyl of Rib-5-P on the
-phosphoryl of ATP resulting in the transfer of the
, -diphosphoryl moiety of ATP to Rib-5-P (6, 7). Mg2+
ions are required to form the actual substrate MgATP and as an activator of the enzyme (8-13). PRPP synthases from Salmonella typhimurium (8, 14, 15), Escherichia coli (11, 16), Bacillus subtilis (10), human (17), and rat (18) possess an
absolute requirement for Pi as an activator and are subject to inhibition by ADP and for B. subtilis and mammalian
enzymes also by GDP, which binds to a specific allosteric site. In
addition, ADP competes with MgATP for binding to the active site. A
second class of PRPP synthases, so far only found in plants, is
independent of Pi for activity (19, 20).
The enzymes from S. typhimurium and E. coli share
identical primary sequences except for two conservative replacements
(16, 21, 22), which is also reflected in their similar, if not identical, enzymological properties. We have previously shown that
Mg2+, MgATP, and Rib-5-P bind in that order to E. coli PRPP synthase by a steady state ordered mechanism and
allosteric inhibition by ADP appeared competitive against activation by
free Mg2+ at subsaturating Rib-5-P concentrations (11).
Inhibition by ADP and GDP was also shown to increase the
half-saturation constant for Mg2+ activation of rat PRPP
synthases I and II (18). From previous analysis of the enzymes from
S. typhimurium (14, 15) and E. coli (16), it was
found that ADP appears to bind to the allosteric site only in the
presence of Rib-5-P. As a consequence, the interaction of PRPP synthase
with the allosteric inhibitor ADP appears to involve ADP binding to the
allosteric site of the enzyme prior to Mg2+ binding as well
as to the enzyme in complex with Mg2+ and substrates.
From analysis of the hydrodynamic properties of S. typhimurium PRPP synthase, it was found that Pi
maintains the oligomeric structure of the enzyme (23) and that removal
of Pi results in irreversible loss of activity (8, 16). The
role of Pi in the steady state kinetics of PRPP synthase
has not previously been analyzed in detail.
Indirect evidence that allosteric Pi activation and ADP
inhibition occur by competition for binding to the same site has been presented. The analysis of mutant forms of human PRPP synthase I that
have a reduced sensitivity to allosteric inhibition by ADP and GDP
revealed a concomitant increase in affinity for Pi (17).
The inhibitor
4-amino-8-( -D-ribofuranosylamino)pyrimido[5,4-d]pyrimidine appears to bind at the allosteric site of both human PRPP synthases I
and II, and the concentration of the inhibitor needed for half-maximal inhibition increased with increasing Pi concentration (24). The recent structure of the B. subtilis PRPP synthase in
complex with ADP or sulfate ions revealed a hexameric arrangement. The structures indicated that the allosteric site defined by three subunits
is the target for binding of both ADP and Pi, the latter being represented by a sulfate ion (25). Together these observations suggest a more subtle mechanism behind Pi activation apart
from maintaining the structure. To gain a more detailed understanding of the regulation of the PRPP synthase, we have analyzed the steady state kinetics of Pi activation of the E. coli
enzyme and suggest a complete model for the interaction of PRPP
synthase with all of its known ligands.
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EXPERIMENTAL PROCEDURES |
Materials and Enzyme Purification--
ATP was obtained from
Roche Molecular Biochemicals, mATP and Rib-5-P were obtained from
Sigma, and cRib-5-P was a gift from R. J. Parry (Rice University,
Houston, TX) (26). [8-14C]ADP was from Amersham
Pharmacia Biotech. E. coli PRPP synthase was purified as
described previously (11, 27) and had a specific activity of
approximately 150 µmol min 1 mg 1 when
assayed in the presence of 2 mM ATP, 5 mM
Rib-5-P, 5 mM MgCl2 as described below. The
protein concentration was determined by the bicinchoninic acid
procedure (28) with reagents provided by Pierce and with bovine serum
albumin as a standard.
Assay of PRPP Synthase Activity--
The 32P
transfer assay was performed at 37 °C in 55 mM
triethanolamine, pH 8.0, as described previously (11, 27), except that
enzyme was diluted in 2 mM ATP, 10 mM
MgCl2, 50 mM triethanolamine, pH 8.0, bovine
serum albumin (1 mg ml 1). The concentrations of divalent
metal ion and nucleotide complexes and free divalent metal ions were
calculated as described previously (9, 11, 15). Unless otherwise noted,
the free Mg2+ concentration varied within a saturating
level of 3-5 mM, because of the varying Pi
concentrations. The MgATP concentration was maintained at 2 mM. The nucleotides ADP and mATP was calculated to be more
than 90% complexed with Mg2+. The binding of
Ca2+ by ATP was neglected when calculating the free
Ca2+ concentration, because Mg2+ was present in
at least 15-fold excess. The stability constant used for the
calculation of the Ca2+ complex with Pi was
0.03 mM 1 (29). The concentration of
Pi, Rib-5-P and inhibitors varied as indicated.
Analysis of Enzyme Kinetic Data--
Results of initial velocity
experiments were analyzed by fitting data by nonlinear regression to
the appropriate Equations 1-6 using the computer program UltraFit
(BioSoft, version 3.01). The standard errors for kinetic parameters
presented are those calculated by the program. Equation 1 is the
Michaelis-Menten equation for hyperbolic substrate saturation kinetics,
Equation 2 is the Hill equation for cooperative substrate saturation
kinetics, Equation 3 is a general equation for nonhyperbolic saturation kinetics (30, 31), Equation 4 applies to noncompetitive inhibition, and
Equations 5 and 6 apply to nonlinear competitive and nonlinear noncompetitive inhibition, respectively, and where the effect of the
inhibitor on S0.5 is caused by successive
binding of two molecules of inhibitor at different sites on the enzyme.
Equations 4-6 apply to cooperative substrate saturation kinetics,
where n is not affected by the presence of inhibitor
(32).
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(Eq. 1)
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(Eq. 2)
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(Eq. 3)
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(Eq. 4)
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(Eq. 5)
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(Eq. 6)
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where v is the initial velocity;
Vapp is the apparent maximal velocity;
S is the concentration of the varied substrate or activator;
Km is the apparent Michaelis-Menten constant for
S; S0.5 is the half-saturation
concentration for S; n is the apparent
Hill-coefficient for S; a, b,
c, and d are complex functions of rate constants
and the concentration of nonvaried substrates and as such have no
physical meaning; Kis,
Kis1, and
Kis2 are inhibition constants for the
effect on S0.5, where a suffix, 1 or 2, on
Kis refers to the two different binding constants
for nonlinear inhibition; and Kii is the inhibitor
constant for the effect on Vapp. All velocities are in µmol min 1 mg 1.
Ligand Binding Studies--
Ligand binding was performed as
described previously (33, 34). PRPP synthase (4.5 nmol) was incubated
at pH 8.2 in 150 µl of 50 mM Pi, 25 mM Tris-HCl, 5 mM MgCl2 and varying
concentrations of ADP (0.2 nCi of [8-14C]ADP per
incubation). When present the Rib-5-P concentration was 2 mM. Each incubation was transferred to a Millipore
Ultrafree-MC centrifugal filter unit and equilibrated to 25 °C and
centrifuged for 5-10 min at 5000 × g in a
thermostated microcentrifuge (OLE DICH Instruments, Copenhagen,
Denmark). Samples (30 µl) from the incubation prior to centrifugation
(total ligand) and from the eluent after centrifugation (free ligand)
was withdrawn, and radioactivity was quantitated with a Packard 2000 liquid scintillation analyzer. The ADP binding data were analyzed by
fitting to Equation 7 or 8 for data obtained in the absence or presence
of Rib-5-P, respectively. Equation 7 applies to simple hyperbolic
binding, and Equation 8 is a two-site binding model with one site, the
allosteric site, showing cooperative binding.
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(Eq. 7)
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(Eq. 8)
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where N is mol ADP bound per mol monomer;
Amax and Bmax are the
numbers of active sites and allosteric sites per monomer of enzyme
(34,000 kDa), respectively; L is the unbound ADP
concentration; KA and KB
are the half-saturation constants for the active site and the
allosteric site, respectively; and nb is the Hill
coefficient for binding to the allosteric site.
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RESULTS |
Stability of PRPP Synthase in the Absence of
Pi--
PRPP synthase from E. coli is normally
stored and diluted in the presence of 50 mM Pi
to maintain stability (16). Therefore, to study Pi
activation it was necessary to find a condition where the enzyme was
stable in the absence of Pi. With 2 mM MgATP or more the enzyme was found to be fully stable upon dilution and subsequent incubation at 37 °C. Because concentrations of free Mg2+ that were kinetically subsaturating, in combination
with 2 mM MgATP, fully stabilized the enzyme, it was
possible to study the influence of Mg2+ and Rib-5-P, but
not MgATP, on the activation of PRPP synthase by Pi.
Influence of Mg2+ or Rib-5-P on Pi
Activation--
Saturation with free Mg2+ resulted in
nearly hyperbolic activation of PRPP synthase by Pi,
whereas cooperative activation by Pi was observed at
unsaturating free Mg2+ concentrations (Fig.
1A). Apparently, also the
S0.5 for Pi increased when the free
Mg2+ concentration was lowered to 14 µM (Fig.
1A). Mg2+ activation appeared hyperbolic at
Pi concentrations of 5 mM and above but was
clearly cooperative at 1.5 mM Pi (Fig.
1B). However, the concentration for half-saturation with
free Mg2+ changed by less than a factor of two over the
entire range of Pi concentrations (Fig. 1B). The
apparent cooperativity of Pi activation increased when the
Rib-5-P concentration was lowered to 0.5 mM and showed a
2-fold decrease in S0.5 for Pi
compared with the results obtained at 5 mM Rib-5-P (Fig.
2A). At 0.5 mM Rib-5-P, beginning inhibition by Pi concentrations
exceeding 25 mM was observed, probably because of
competitive binding to the Rib-5-P binding site. Apparently, the
saturation of PRPP synthase with Rib-5-P was sensitive to the
Pi concentration because increasing Rib-5-P concentrations
induced partial substrate inhibition that was relieved by 50 mM Pi (Fig. 2B).

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Fig. 1.
Activation of PRPP synthase by Pi
or Mg2+. Assays were performed as described under
"Experimental Procedures." A, Pi varied as
indicated in the presence of the indicated concentrations of
Mg2+. , data were fitted to Equation 2;
Vapp = 130 ± 3, S0.5 = 3.1 ± 0.2 mM,
n = 1.3 ± 0.1. , data were fitted to Equation 2; Vapp = 73 ± 1, S0.5 = 2.6 ± 0.1 mM,
n = 2.0 ± 0.2. , data were fitted to Equation 2; Vapp = 39.1 ± 0.8, S0.5 = 8.5 ± 0.3 mM,
n = 2.0 ± 0.1. B, Mg2+
varied as indicated in the presence of the indicated concentrations of
Pi. , data were fitted to Equation 1;
Vapp = 129 ± 4, Km = 41 ± 4 µM. , data were fitted to Equation 1;
Vapp = 103 ± 6, Km = 59 ± 10 µM. , data were fitted to Equation 2;
Vapp = 55 ± 2, S0.5 = 69 ± 5 µM, n = 2.1 ± 0.2.
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Fig. 2.
Saturation of PRPP synthase by Pi
or Rib-5-P. Assays were performed as described under
"Experimental Procedures." A, Pi varied as
indicated in the presence of the indicated concentrations of Rib-5-P.
, data were fitted to Equation 2; Vapp = 150 ± 6, S0.5 = 2.6 ± 0.3 mM, n = 1.2 ± 0.1. , data were
fitted to Equation 2; Vapp = 129 ± 2, S0.5 = 1.65 ± 0.05 mM,
n = 2.1 ± 0.1. B, Rib-5-P varied as
indicated in the presence of the indicated concentrations of
Pi. , data were fitted to Equation 1;
Vapp = 157 ± 2, Km = 0.19 ± 0.01 mM. , , and , data were fitted
to Equation 3.
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Inhibition of Pi Activation by Ca2+,
MgmATP, or cRib-5-P--
Divalent calcium, MgmATP, and cRib-5-P have
been shown to competitively inhibit the binding of Mg2+,
MgATP, and Rib-5-P, respectively (11). Results from experiments where
Pi was varied in the presence of different fixed
concentrations of inhibitor at saturating or nonsaturating Rib-5-P
concentrations are presented in Table I.
All three inhibitors exhibited linear noncompetitive inhibition of
Pi binding regardless of the Rib-5-P concentration. At the
tested concentrations of inhibitor and Rib-5-P neither
Ca2+, MgmATP, nor cRib-5-P induced inhibition by increasing
Pi concentrations.
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Table I
Mode of inhibition of Pi activation by inhibitors of PRPP
synthase
Inhibition constants were determined as described under "Experimental
Procedures."
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Inhibition of Pi Activation by ADP--
When
Pi was varied at either 0.5 mM or 5 mM Rib-5-P, the presence of increasing fixed concentrations
of ADP resulted in a pronounced nonlinear effect on
S0.5 for Pi (Fig.
3 and Table I). The effect of ADP on both
S0.5 and Vapp for
saturation of the enzyme by Pi in the presence of 0.5 mM Rib-5-P could readily be determined when the data were
fitted to Equation 5 (Fig. 3B and Table I). Data from ADP
inhibition of Pi saturation at 5 mM Rib-5-P were fitted as nonlinear competitive inhibition because no effect of
ADP on Vapp could be estimated for the data
within the range of Pi concentrations available to us (Fig.
3A and Table I). Increasing the concentration of
Pi beyond 50 mM in the assay incubation
results in the rapid formation of a MgPi
precipitate.

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Fig. 3.
Inhibition of Pi activation of
PRPP synthase by ADP. Assays were performed as described under
"Experimental Procedures." Pi varied as indicated in
the presence of the indicated concentrations of ADP and 5 mM Rib-5-P (A; data were fitted to Equation 5;
the calculated constants are presented in Table I) or 0.5 mM Rib-5-P (B; data were fitted to Equation 6;
the calculated constants are presented in Table I).
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Binding of ADP--
An observed cooperativity in binding of MgmATP
to PRPP synthase (14) at 0 °C was shown to be an effect of the
temperature at which the experiment was performed, because it is absent
at 25 °C (11). To investigate whether the high degree of
cooperativity associated with ADP binding to the allosteric site
previously determined (14) would also be influenced by temperature, we performed ADP binding experiments at 25 °C. However, the extent of
cooperativity in ADP binding to the allosteric site at 25 °C (Fig.
4) was not significantly different from
that determined previously at 0 °C (14).

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Fig. 4.
Binding of ADP to PRPP synthase. Binding
experiments were performed as described under "Experimental
Procedures." The binding of ADP was determined in the absence or
presence of Rib-5-P as indicated. , data were fitted to Equation 7;
Amax = 1.14 ± 0.05, KA = 59 ± 11 µM). , data
were fitted to Equation 8; Amax = 1.0 ± 0.1, KA = 4±2 µM,
Bmax = 1.0 ± 0.2, KB = 244 ± 52 µM,
nb = 2.4 ± 1.4.
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DISCUSSION |
Steady state kinetics and ligand binding studies of the S. typhimurium and E. coli PRPP synthases have identified
the mechanism for Mg2+, MgATP, and Rib-5-P binding to the
enzyme as occurring in that order (8, 9, 11). Allosteric binding of ADP
has been shown to occur either at conditions where the enzyme is fully
saturated with Mg2+ and substrates (14-16) or prior to
binding of Mg2+ and substrates as revealed by cooperative
competitive ADP inhibition of Mg2+ activation (11).
By comparing MgmATP and ADP inhibition of Pi activation at
0.5 mM Rib-5-P (Table I) the Kii for ADP
is likely to represent binding to the active site in competition with
MgATP. The nonlinear effect of ADP on S0.5 for
Pi described by Kis1 and
Kis2 is observed both at 0.5 and 5 mM Rib-5-P. This nonlinear effect of ADP on
S0.5 for Pi is sufficient to explain the inhibition by ADP at 5 mM Rib-5-P. Although a
Kii for ADP at 5 mM Rib-5-P would have
been expected by comparing with MgmATP inhibition under similar
conditions, this could not be extracted from the data. The nonlinear
effect of ADP on S0.5 for Pi, (Table
I) suggests that ADP competes with Pi for binding to the
regulatory site. However, because neither
Kis1 nor
Kis2 is comparable with
Kis for MgmATP under similar conditions, we hesitate
to further assign an exact physical meaning for
Kis1 and
Kis2. It appears that ADP and
Pi compete for binding to the same enzyme form in a manner largely independent of the Rib-5-P concentration. On the basis of the
previous data from ADP inhibition and ligand binding studies mentioned
above, we suggest that ADP and Pi compete for binding to
the allosteric site of the enzyme either prior to or after binding of
Mg2+ and substrates.
The results of Fig. 2 shows the characteristics of a steady state
random mechanism (30, 31, 35) with a preferred pathway in which
Pi binds to the enzyme prior to Rib-5-P. The kinetic pattern shown in Fig. 2 is likely to result from a difference in the
magnitude of the rate constants of otherwise similar kinetic equilibria
for a random binding of Pi and Rib-5-P. Because substrate inhibition by Rib-5-P is only partial, it is unlikely to result from
formation of a dead end complex.
The apparent noncompetitive inhibition of Pi activation
observed by Ca2+, MgmATP, or cRib-5-P (Table I) suggests
two mechanisms that both would agree with the results of Fig. 2. Either
substrates can bind fully random to the enzyme with respect to
Pi (i.e. before or after binding of
Pi) by a steady state random mechanism, or an ordered
binding of Mg2+ and MgATP is proceeded by a random binding
of Rib-5-P and Pi. In favor of a fully random mechanism is
the absence of inhibition at increasing Pi concentrations
induced by the presence of inhibitor. This would be observed to the
extent that obligatory binding of the inhibitor to the enzyme occurs
prior to Pi and if downstream binding of substrates and
Pi also occurs to the enzyme inhibitor complex (36). Both
Ca2+ (15) and MgmATP (11) induce substrate inhibition by
Rib-5-P in agreement with the ordered binding mechanism where Rib-5-P binds to the enzyme last. A random mechanism where Mg2+ and
substrates bind to PRPP synthase either before or after Pi binding therefore appears most consistent with the results presented here and those previously obtained as mentioned above.
In Scheme 1 an outline of the interaction
of PRPP synthase with substrates, activators, and ADP is suggested. The
allosteric effectors Pi and ADP compete for binding to the
allosteric site of either the free enzyme or enzyme in complex with
Mg2+ and substrates. To explain the data of Fig. 2, we have
made the assumption that a fast pathway and a slow pathway exist from
the free enzyme to the catalytic complex. Furthermore, it is assumed that the binding order of Mg2+, MgATP, and Rib-5-P is
conserved whether Pi is bound to the enzyme or not. The
noncompetitive inhibition of Pi activation by
Ca2+, MgmATP, and Rib-5-P is also consistent with the
mechanism in Scheme 1.

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Scheme 1.
Proposed steady state mechanism for a
random binding of Pi to PRPP synthase comprising an ordered
binding of Mg2+ and substrates. The bold
line represents the fast pathway. E represents PRPP
synthase. Pi (ADP) indicates that
Pi and ADP compete for binding to the allosteric
site.
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According to Scheme 1 the Mg2+ activation of PRPP synthase
should resemble the saturation of the enzyme with Rib-5-P under similar conditions. Accordingly, the results of Fig. 1A where
unsaturation of PRPP synthase with Mg2+ yields cooperative
Pi activation can be explained by a preferred pathway in a
random mechanism. However, unlike the saturation with Rib-5-P at low
Pi concentrations (Fig. 2B), the
Mg2+ activation at 1.5 mM Pi is
cooperative (Fig. 1B), and no inhibition by increasing
Mg2+ concentrations is observed. Because apparently no
cooperativity is associated with Ca2+ inhibition of
Pi activation, it may suggest that the apparent cooperativity of Mg2+ activation at low Pi is
not due to homotropic site-site interactions. The apparent
cooperativity of Mg2+ activation in the presence of 1.5 mM Pi (Fig. 1B) may be interpreted in terms of the apparent increase in S0.5 for
Pi at low Mg2+ (Fig. 1A). If the
affinity of the enzyme for Pi binding via the slow pathway
is relatively higher, it may favor this pathway over the fast pathway
at low Mg2+ concentrations.
We realize that Scheme 1 must somehow be a simplification of the actual
overall mechanism for PRPP synthase. One consistent observation that is
not explained by Scheme 1 is the high degree of cooperativity for
binding of ADP to the allosteric site (Fig. 4) with Hill coefficients
between 3 and 4.4 when determined in the presence of 50 mM
Pi (11, 14). Our results from ADP inhibition of
Pi activation at 0.5 mM and 5 mM
Rib-5-P can be explained without including any cooperativity associated
with the ADP inhibition. It seems controversial that ADP and
Pi can only bind to the allosteric site of either free
enzyme or enzyme complexed with Mg2+ and substrates.
However, at present there seems to be no experimental evidence
supporting the possibility that ADP can bind to the intermediates of
Scheme 1 other than those indicated, and because ADP and Pi apparently compete for binding to the same form(s) of the enzyme, this
should be true for Pi as well. Apart from explaining the observed competition between binding of Mg2+ and ADP (11,
18) as a simple consequence of a random mechanism, Scheme 1 also allows
for an equilibrium between active and inactive forms of the enzyme that
can be shifted by allosteric effectors and apparently by specific amino
acid changes, as suggested from analysis of human mutant enzymes
(17).
The recent solving of the crystal structure of B. subtilis
PRPP synthase (25) seems very promising for our attempts to understand the mechanism behind the allosteric regulation of the enzyme. The
kinetic analysis presented here suggests what complexes can be expected
to be formed between the enzyme and its ligands. When the structural
details of more complexes are known other than those likely to
represent free enzyme complexed with ADP and Pi, we may
address specific questions about the regulatory mechanism in Scheme
1.
The mechanism in Scheme 1 also addresses the question of actual
substrate and activator concentrations under physiological conditions.
Because the response of the PRPP synthase to substrates, activators,
and ADP seems very dependent on the concentration of Rib-5-P and
Pi, it may suggest that the mechanism proposed in Scheme 1
can play a regulatory role in determining the rate of PRPP synthesis in
response to changes in metabolite concentrations. This is the topic of
work currently in progress in our laboratories.
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ACKNOWLEDGEMENTS |
We thank Jørgen Andresen for excellent
technical assistance. K. Frank Jensen and Robert L. Switzer are
acknowledged for valuable discussions.
 |
FOOTNOTES |
*
This work was supported by the Danish National Research
Foundation and the Danish Natural Science Research Council.The costs of publication of this
article were defrayed in part by the
payment of page charges. The article
must therefore be hereby marked
"advertisement" in
accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
§
To whom correspondence should be addressed. Tel.: 45-35320239; Fax:
45-35320299; E-mail: martin@xray.ki.ku.dk.
Published, JBC Papers in Press, August 22, 2000, DOI 10.1074/jbc.M006346200
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ABBREVIATIONS |
The abbreviations used are:
PRPP, 5-phospho-D-ribosyl -1-diphosphate;
Rib-5-P, ribose
5-phosphate;
cRib-5-P, (+)-1- ,2- ,3- -trihydroxy-4- -cyclopentanemethanol
5-phosphate;
mATP, , -methylene ATP;
MgmATP, , -methylene MgATP.
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