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J. Biol. Chem., Vol. 275, Issue 51, 39823-39826, December 22, 2000
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§¶,
**,
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From the
Institut de Pharmacologie Moléculaire et
Cellulaire, CNRS-UPR 411, 660 route des Lucioles, Sophia Antipolis
06560 Valbonne, France and the
Departments of Chemistry
and Biochemistry, University of Washington, Seattle, Washington
98195
Received for publication, September 26, 2000, and in revised form, October 11, 2000
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ABSTRACT |
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Mammals contain a diverse set of
secreted phospholipases A2 (sPLA2s) that
liberate arachidonic acid from phospholipids for the production of
eicosanoids and exert a variety of physiological and pathological
effects. We report the cloning, recombinant expression, and kinetic
properties of a novel human sPLA2 that defines a new structural class of sPLA2s called group XII. The human
group XII (hGXII) cDNA contains a putative signal peptide of 22 residues followed by a mature protein of 167 amino acids that displays homology to all known sPLA2s only over a short stretch of
amino acids in the active site region. Northern blot and reverse
transcription-polymerase chain reaction analyses show that the tissue
distribution of hGXII is distinct from the other human
sPLA2s with strong expression in heart, skeletal muscle,
kidney, and pancreas and weaker expression in brain, liver, small
intestine, lung, placenta, ovaries, testis, and prostate. Catalytically
active hGXII was produced in Escherichia coli and shown to
be Ca2+-dependent despite the fact that it is
predicted to have an unusual Ca2+-binding loop. Similar to
the previously characterized mouse group IIE sPLA2s, the
specific activity of hGXII is low in comparison to that of other
mammalian sPLA2, suggesting that hGXII could have novel
functions that are independent of its phospholipase A2 activity.
Secreted phospholipases A2
(sPLA2)1 are
Ca2+-dependent disulfide-rich 14-18-kDa
enzymes that catalyze the hydrolysis of phospholipids at the
sn 2-position to release fatty acids and lysophospholipids (1-3). In mammalian cells stimulated with proinflammatory agonists, a
subset of sPLA2s is involved in the release of arachidonic
acid for eicosanoid production (4, 5). The first mammalian
sPLA2 to be identified was the pancreatic
sPLA2. This sPLA2 is found at high levels in
pancreatic juice where it has a well known function in the digestion of
dietary phospholipids (6). However, sPLA2 is also found at
lower levels in lung, liver, spleen, kidney, and ovary where it has
been proposed to play a role in cell proliferation, acute lung injury,
cell migration, and endotoxic shock (7-9). The first nonpancreatic
mammalian sPLA2 to be identified was the group IIA enzyme,
which is expressed at high levels during inflammation (10) and is the
principal bactericidal agent against Gram-positive bacteria in human
tears (11).
In addition to the above evidence, it is becoming clear that
sPLA2s are involved in a diverse set of physiological
functions (7, 12-14). In the last few years, six mouse and five human sPLA2s structurally related to GIB and GIIA
sPLA2s (mGIIC, hGIID, mGIID,
hGIIE, mGIIE, mGIIF, hGIIF, hGV, mGV, hGX, and mGX)2 have
been identified (15-20).3
All of these group I/II/V/X sPLA2s have similar primary
structures, including identical catalytic site residues and partially
overlapping sets of disulfides (21). However, they are not closely
related isoforms because the level of amino acid identity is typically 20-50% among these sPLA2s. More recently, a novel human
group III sPLA2 was identified (22), which is structurally
distinct from the group I/II/V/X sPLA2s but related to the
group III sPLA2s found in bee and lizard venoms. This
diversity of sPLA2 structures and the fact that the tissue
distribution of the different sPLA2s are distinct argue for
a diversity of physiological functions for these lipolytic enzymes.
It is also clear that mammals contain a collection of proteins that
tightly bind sPLA2s. Two types of sPLA2
receptors (M- and N-type) as well as other soluble
sPLA2-binding proteins have been identified (7, 13, 21,
23-25) and are likely to play a role in the physiological functions of
mammalian sPLA2s and in the toxicity of a wide variety of
myotoxic and neurotoxic sPLA2s found in reptile and
invertebrate venoms. Very recently, the cell surface proteoglycan
glypican was also identified as a sPLA2-binding protein
able to facilitate arachidonic acid release by GIIA and GV
sPLA2s in fibroblastic cells (26).
Because of the presence of a large collection of sPLA2s in
both mammals and many reptile and invertebrate venoms, we have been
searching nucleic acid databases for the presence of novel mammalian
sPLA2s with homology to all known types of these enzymes, including structurally distinct ones like the group IX
sPLA2 (Conodipine-M) from the venom of the cone snail
Conus magus (27). In this work, we report the cloning,
recombinant expression, tissue distribution, and enzymatic properties
of a novel human sPLA2. Because this sPLA2
clearly belongs to a new structural class, we propose to name it human
group XII sPLA2 (hGXII) to follow the recently identified group XI plant sPLA2s (21, 28, 29).
Molecular Cloning of hGXII sPLA2--
Searching for
mammalian and venom sPLA2 homologs in genomic databases
stored at the National Center for Biotechnology using the tBLASTn
sequence alignment program (30) resulted in the identification of
different human ESTs (GenBankTM/EBI BE271092, AW468813, AI189300) and a
human genomic BAC clone (GenBankTM/EBI AC004067) that display low
homology with various mammalian and venom sPLA2s (27). None
of the ESTs were found to contain the full-length cDNA coding for
the new sPLA2 candidate, but a putative complete open
reading frame could be constructed from the alignment of the
different ESTs and the appropriately spliced genomic sequence. A
forward primer (5'-TTTGCGGCCGCATATGGAGCTGGCTGCTGCCAAGT) and a reverse
primer (5'-TTTAAGCTTCTAGAATCTGTCACTAGCTGTCGGCATC) flanking the
above open reading frame and containing appropriate restriction sites
were used to amplify by RT-PCR the cDNA fragment coding for hGXII
sPLA2. The expected 717-nucleotide hGXII cDNA fragment
could be amplified from human fetal lung, pancreas, and testis
cDNAs (CLONTECH) using a Taq Pwo
polymerase mixture (Hybaid, United Kingdom). The PCR fragments were
digested with NotI and XbaI, ligated into the
mammalian expression vector pRc/CMVneo (Invitrogen), and sequenced in
its entirety. Several clones were found to be identical to the
consensus sequence described above.
Recombinant Expression of hGXII sPLA2--
The
pRc/CMVneo-hGXII construct was used as template in a PCR
reaction with a forward primer
(5'-TTTGGATCCATCGAAGGTCGTCAGGAGCAGGCCCAGACCGAC), which contains a
BamHI site and a factor Xa protease site (Ile-Glu-Gly-Arg) adjacent to the predicted N-terminal Gln residue of mature hGXII sPLA2 (see Fig. 1) and the reverse primer given above. The
purified PCR product was digested with BamHI and
HindIII and was subcloned in frame with the truncated
glutathione S-transferase (~10 kDa) encoded by the
modified pGEX-2T vector (pAB3), which had been previously
used to express several sPLA2s in Escherichia
coli (17). Protein production in E. coli BL21,
purification of inclusion bodies, and refolding and cleavage of the
fusion protein with factor Xa were carried out as described previously
(17). Cleaved hGXII was purified by HPLC on a Spherogel TSK SP-5PW
column (10 µm, 0.75 × 7.5 cm, Altex) using a gradient of 1%
acetic acid to 1 M ammonium acetate over 50 min (elution at
28 min) and was further purified on a reverse phase column (Waters RP8
Symmetry Shield, 5 µm, 100 Å, 0.46 × 25 cm) using a gradient
of 10-60% acetonitrile in water with 0.1% trifluoroacetic acid over
50 min (elution at 36 min). The hGXII preparation appeared 100% pure
when analyzed by SDS-polyacrylamide gel electrophoresis. MALDI-TOF
(Applied Biosystems DE-Pro) was carried out in the linear mode using
sinapinic acid.
Analysis of the Tissue Distribution of hGXII
sPLA2--
The presence of mRNA for hGXII
sPLA2 in different human tissues was explored by Northern
blot and RT-PCR analyses. A human Northern blot
(CLONTECH catalog no. 7780-1) was probed as
described previously (18) with a 32P-labeled riboprobe
corresponding to the hGXII coding sequence. For RT-PCR, reactions were
performed with an internal forward primer
(5'-GCCTTTCCCACGTTATGGTT) and the reverse primer described above (200 ng each), Taq polymerase, and 1 µl of human cDNA as template (Human Multiple Tissue cDNA Panels I and II,
CLONTECH catalog nos. K1420-1 and K1421-1). PCR was
carried out at 94 °C for 2 min followed by 45 cycles of 94 °C/30
s, 60 °C/30 s, and 72 °C/1 min, which was followed by 72 °C
for 5 min. PCR reactions were analyzed by Southern blotting using a
32P-labeled hGXII oligonucleotide probe
(5'-GGATGTGGCTCTCCACTGTT).
Kinetic Studies--
Large unilamellar vesicles (0.1 µm) of
POPC, POPG, and POPS (31) were used to measure the initial rates of
hydrolysis by hGXII in Hank's balanced salt solution with 1.2 mM CaCl2 and 0.9 mM
MgCl2 using the fatty acid-binding protein assay (17). The pH-rate profile and Ca2+ dependence for the action of hGXII
on POPG and POPC vesicles, respectively, were obtained as described
previously (17).
Molecular Cloning of a Structurally Novel Human
sPLA2--
Screening of nucleic acid databases with all
known types of mammalian and venom sPLA2s (groups I, II,
III, V, IX, and X) led us to identify various human ESTs and a large
human BAC clone of 161,326 nucleotides coding for a putative novel
sPLA2 (hGXII) that displays homology with other
sPLA2s only in the active site region. A cDNA sequence
containing a possible complete open reading frame was deduced from the
alignment of the various ESTs and the genomic sequence and was then
used to design primers for RT-PCR experiments with cDNA from
various human tissues. The expected 717-nucleotide cDNA fragment
containing an open reading frame of 567 nucleotides was amplified at a
high level from human fetal lung cDNA and at lower levels from
pancreas and testis cDNAs (not shown). The open reading frame was
found to display some of the expected features for a sPLA2
(Fig. 1A). The initiator
methionine is followed by a 22-amino acid sequence presenting the
features of a signal peptide (32) and a mature protein sequence of 167 residues. The calculated molecular mass and pI values for the mature
protein are 18,702.1 Da and 6.26, respectively, and no consensus site
for N-glycosylation was found. Like several other sPLA2s, the mature hGXII sequence contains 14 cysteines and
a central catalytic domain with a HD catalytic diad (Fig.
1B). Comparison of the 717-nucleotide cDNA sequence with
the genomic sequence indicates that the hGXII
sPLA2 gene is composed of at least 4 exons and 3 introns
spanning about 15 kilobases in length. The human BAC clone containing
the hGXII gene was also found to contain different
sequence-tagged sites positioned at the 4q25 locus, thus assigning the
hGXII gene to this location on chromosome 4. Further
screening of the EST databases with the hGXII cDNA sequence led to
the identification of several other ESTs partially coding for mouse
(GenBankTM/EBI AA020156 and AA204520), rat (GenBankTM/EBI AW918074),
and bovine (GenBankTM /EBI AW353546) GXII sPLA2s (Fig.
1A). A full-length amino acid sequence coding for
Xenopus laevis GXII sPLA2 was deduced from the
alignment of two ESTs (GenBankTM/EBI AW641606 and AW639634).
Interestingly, the level of identity of this novel GXII
sPLA2 among species is very high (Fig. 1A) as
compared with those of other sPLA2s (18, 21).
A BLASTp search with the amino acid sequence of hGXII sPLA2
against the protein databases stored at the National Center for Biotechnology reveals matches to a variety of sPLA2s from
mammals, Caenorhabditis elegans, plants, and animal venoms,
suggesting that this protein belongs to the sPLA2 family.
The homology however appears to be weak (<35% identity with BLAST
scores lower than 35) and restricted to a short stretch of less than 60 amino acid residues containing the active site domain and the HD
catalytic diad. This indicates that the hGXII sPLA2 is
unique among all known sPLA2s (Fig. 1B). The
histidine of HD is thought to function as a general base to deprotonate
a water molecule as it attacks the substrate ester carbonyl carbon, and
the
The homology between hGXII and all known sPLA2s is so low
that it is difficult to find the Ca2+-binding loop, which
is usually highly conserved and provides three of the four amino acid
ligands for the catalytic Ca2+ (34). All mammalian group I,
II, V, and X sPLA2s contain 19 amino acid residues between
the most N-terminal residue that serves as a ligand to the active site
Ca2+ (i.e. His-27 of hGIIA) and the catalytic
histidine (i.e. His-47 of hGIIA). In contrast, the
corresponding distances for hGIII and plant GXI sPLA2s are
25 and 23 residues, respectively. hGXII contains a potential
Ca2+-binding segment GCGSP with 23 residues between the
N-terminal glycine and the putative catalytic histidine as shown in
Fig. 1. This segment is perfectly conserved among all of the GXII
proteins found in genomic databases. The x-ray structures of groups I, II, and III sPLA2s reveal that the Ca2+ loop
contains the consensus segment
X-Cys-Gly-X-Gly with the amino acids designated
as
X1CG1X2G2,
respectively. The backbone carbonyl oxygens of residues
X1, G1, and G2
coordinate to Ca2+, and the backbone NH of G1
is proposed to donate a hydrogen bond to the carbonyl oxygen of the
enzyme-susceptible substrate ester (33, 35). The fact that this residue
is glycine in catalytically active sPLA2s and that mutating
this residue to serine lowers catalytic activity by about 10- to
20-fold (35) argues that steric bulk is poorly tolerated at this
position. The putative Ca2+-coordinating segment of hGXII
shown in Fig. 1B fits the consensus sequence of other
sPLA2s with the exception that G2 is a proline in hGXII. The prediction based on examination of the x-ray structures of sPLA2s is that the hGXII Ca2+-binding
segment should be functional. It contains G1, and the backbone carbonyl of the C-terminal proline can coordinate to Ca2+ because its three extra methylenes, compared with
glycine, are sterically allowed because of the location of this residue
on the enzyme surface away from the substrate-binding cavity.
Interestingly, sPLA2 isozymes with relatively low
sPLA2 activity from the venom of the banded krait also
contain proline in place of G2 (36).
Tissue Distribution of hGXII sPLA2--
The tissue
distribution of hGXII was first analyzed by hybridization at high
stringency to a human Northern blot (Fig.
2). hGXII is expressed as several
transcripts including a major one of ~1.4 kilobase, which is abundant
in heart, skeletal muscle, and kidney. hGXII transcripts are also
present at lower levels in brain, liver, small intestine, lung, and
placenta, and expressed poorly, if at all, in colon, thymus, spleen,
and peripheral blood leukocytes. Furthermore, analysis by RT-PCR with
commercial human tissue cDNA panels indicates a pattern of hGXII
expression that is consistent with the Northern blot data and
additionally shows that this sPLA2 is strongly expressed in
pancreas and weakly in ovaries, testis, and prostate (not shown). The
pattern of expression of hGXII thus appears distinct from that of other
known human sPLA2s (16, 19, 22),3
suggesting specific function(s) for this novel
sPLA2.
Recombinant Expression of hGXII and Enzymatic Properties--
A
mammalian expression vector containing the full-length hGXII cDNA
was first used to transiently transfect HEK293 cells. The amount of
sPLA2 activity (as measured with an assay using radiolabeled E. coli membranes, Ref. 16) secreted into the
culture medium 1-5 days after transfection was barely above that
measured in medium from cells transfected with vector lacking the hGXII insert, suggesting that hGXII may have a low specific activity. To
further analyze if hGXII is a catalytically active sPLA2,
we expressed hGXII as a fusion protein in E. coli, and the
inclusion body fraction was submitted to a refolding strategy
previously used to produce catalytically active mGIID sPLA2
(17). After digesting the fusion protein with factor Xa protease, hGXII
was purified to homogeneity by HPLC and was found to migrate as a pure
protein of about 18 kDa on a Laemmli SDS gel (not shown). Mass
spectrometry analysis gave an experimental mass of 18,702.6 ± 0.5 Da, which agrees well with the mass of 18,702.1 Da calculated from the
sequence of mature hGXII shown in Fig. 1A. This result indicates that all 14 cysteines are engaged in disulfide bonds, and
thus it is assumed that recombinant hGXII is properly folded.
Recombinant hGXII was found to be a catalytically active
sPLA2 when assayed with the radiolabeled E. coli
membrane assay (16) and with POPG, POPS, and POPC vesicles using the
fatty acid-binding protein assay (17). As shown in Fig.
3A, sPLA2 activity
toward POPC vesicles was strictly
Ca2+-dependent (Kcalcium = 30 ± 10 µM). hGXII activity is maximal near pH
8.0 and decreases at higher and lower pH values (Fig. 3B).
The decrease as the pH is lowered presumably reflects, in part, the
protonation of the active site histidine. As for all mammalian
sPLA2s examined so far, the enzymatic activity of hGXII on
phosphatidylglycerol vesicles is highest (Fig. 3C), which
probably reflects the tighter binding of hGXII to anionic vesicles
(37). Although hGXII hydrolyzes POPC at only ~7% of the rate of
POPG, this difference is small compared with the >105-fold
preference of hGIIA for POPG versus POPC (18). POPS is also
a good substrate for hGXII (Fig. 3C).
Concluding Remarks--
In summary, we cloned a novel
catalytically active human sPLA2, hGXII, which belongs to a
new structural class with homologs in other mammalian species and in
Xenopus laevis. Because hGXII is expressed in a limited
number of human tissues and has an expression pattern distinct from
those of other human sPLA2s, it is not expected to carry
out "housekeeping" functions in cells, but rather to have
physiological function(s) distinct from those of other human sPLA2s. A sPLA2 gene cluster for the
structurally similar hGIIA, hGIIC, hGIID, hGIIE, hGIIF, and hGV
sPLA2s is present on human chromosome 1,3
whereas structurally more distant hGIB, hGX, and hGIII
sPLA2s lie on different chromosomes (chromosomes 12, 16, and 22, respectively), as is also shown in this study for hGXII
sPLA2 (chromosome 4). Recombinant expression of hGXII shows
that it is a catalytically active,
Ca2+-dependent sPLA2. However, the
specific enzymatic activity of hGXII appears very low compared with
those of other mammalian sPLA2s (for example hGIB, hGIIA,
hGV, and hGX) and is comparable with the low specific activity reported
for mGIIE sPLA2 (18). This may be the reason why hGXII
sPLA2 was not detected in earlier biochemical studies
despite the fact that this protein may be expressed at significant
levels and the transcripts coding for this later are present in fairly
high amounts in several human tissues (Fig. 2). It is also interesting
to note that the putative GXII sPLA2 from zebrafish
(Danio rerio) is represented in genomic databases by several
ESTs that all contain a leucine in place of histidine in the catalytic
HD segment. This type of mutation suggests that the zebrafish GXII
sPLA2 has very little or no catalytic activity, probably
lower than that of hGXII sPLA2. This in turn suggests that
the catalytic activity of group XII sPLA2s may not be
critical for their physiological function. Rather, they may act
by serving as ligands for sPLA2-binding proteins instead of acting as lipolytic enzymes (13).
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INTRODUCTION
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS AND DISCUSSION
REFERENCES
![]()
EXPERIMENTAL PROCEDURES
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS AND DISCUSSION
REFERENCES
![]()
RESULTS AND DISCUSSION
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS AND DISCUSSION
REFERENCES

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Fig. 1.
Alignment of the amino acid sequences of
sPLA2s. A, the full-length sequence
of hGXII is aligned with the amino acid sequences of mouse, rat,
bovine, and Xenopus GXII sPLA2s. (Sequences were
deduced from the alignment of different ESTs and from the BAC clone).
For some sPLA2s, the XX residues indicate that
the sequence is partial. The arrowhead indicates the
predicted signal peptide cleavage site (32). The active site region
containing catalytic site residues that are found in all
sPLA2s, and the putative Ca2+-binding segment
GCGSP are indicated. The level of identity between the mature protein
sequence of hGXII and other GXII sPLA2s is shown.
B, alignment of the Ca2+-binding and active site
regions of hGXII with a representative member of the four other
structural classes of sPLA2s (hGIB for GI/II/V/X
sPLA2s, hGIII for GIII sPLA2s, Conodipine-M for
GIX sPLA2, and Rice II for GXI sPLA2s).
-carboxyl group of the adjacent aspartate coordinates directly
to the catalytic Ca2+ cofactor (6, 33). Except for 3 cysteines in the active site consensus sequence
CCXXHDXC, which match those of other groups of
sPLA2s, the location of the other 11 cysteines residues in hGXII is distinct from that of other sPLA2s (Fig.
1B). Because the structural arrangement of disulfides has
been the main basis for designating the different sPLA2
group numbers, the naming of the new sPLA2 as hGXII
seems appropriate.

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Fig. 2.
Northern blot analysis of the tissue
distribution of hGXII. A commercial Northern blot containing 2 µg of poly (A)+ RNA from different human adult tissues
was hybridized at high stringency with a 32P-labeled hGXII
RNA probe as described under "Experimental Procedures." ske.
muscle, skeletal muscle; small intest., small
intestine; PBL, peripheral blood leukocytes; kb,
kilobase.

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Fig. 3.
Enzymatic properties of hGXII. A,
initial velocity for the hydrolysis of POPC vesicles containing a trace
of
1-palmitoyl-2-[8,9-3H]palmitoyl-sn-glycero-3-phosphocholine
(100,000 dpm of substrate per assay of 60-Ci/mmol-labeled lipid) as a
function of the Ca2+ concentration. B, initial
velocity for the hydrolysis of POPG vesicles containing a small amount
of
1-palmitoyl-2-[8,9-3H]palmitoyl-sn-glycero-3-phosphoglycerol
(100,000 dpm of substrate per assay of 60-Ci/mmol-labeled lipid) as a
function of pH. C, initial velocity for the hydrolysis of
large unilamellar vesicles (0.1 µm) of the indicated phospholipid.
Additional assay details have been reported elsewhere (17).
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ACKNOWLEDGEMENTS |
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We thank Pierre Escoubas and Sabine Thaon for MALDI-TOF analysis and Catherine Le Calvez for technical assistance.
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FOOTNOTES |
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* This work was supported in part by National Institutes of Health Grant HL36236, the CNRS, the Association pour la Recherche sur le Cancer, and the Fonds de Recherche Hoechst Marion Roussel.The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
The nucleotide sequence(s) reported in this paper has been submitted to the GenBankTM/EMBL Data Bank with accession number(s) AF306567.
§ Recipient of a short term fellowship from the Human Frontier Science Program.
¶ To whom correspondence may be addressed. Fax: 33 4 93 95 77 04; E-mail: ipmc@ipmc.cnrs.fr (to G. L.) or Fax: 206 685 8665; E-mail: gelb@chem.washington.edu (to M. H. G.).
** Recipient of a grant from the région Provence Alpes Côte d'Azur-CNRS program.
Published, JBC Papers in Press, October 12, 2000, DOI 10.1074/jbc.C000671200
2 A comprehensive abbreviation system for the various mammalian sPLA2s is used. Each sPLA2 is abbreviated with a lowercase letter indicating the sPLA2 species (m and h for mouse and human, respectively), followed by uppercase letters identifying the sPLA2 group (GIB, GIIA, GIIC, GIID, GIIE, GIIF, GIII, GV, GIX, GX, GXI, and GXII).
3 E. Valentin, et al., submitted for publication.
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ABBREVIATIONS |
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The abbreviations used are: sPLA2, secreted phospholipase A2; POPC/G/S, 1-palmitoyl-2-oleoyl-sn-glycero-3-phospho-choline/glycerol/serine; RT-PCR, reverse transcription-polymerase chain reaction; h, human; m, mouse; EST, expressed sequence tag; CMV, cytomegalovirus; HPLC, high pressure liquid chromatography; MALDI-TOF, matrix-assisted laser desorption ionization-time of flight mass spectrometry; HD, His-Asp catalytic diad.
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REFERENCES |
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